data_4IMV # _entry.id 4IMV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4IMV RCSB RCSB076951 WWPDB D_1000076951 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3LC9 'Ricin A-chain variant 1-33/44-198 with engineered disulfide bond, R48C/T77C' unspecified PDB 3MK9 'Ricin A-chain variant 1-33/44-198 with engineered disulfide bond, V49C/E99C' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4IMV _pdbx_database_status.recvd_initial_deposition_date 2013-01-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Legler, P.M.' 1 'Compton, J.R.' 2 'Millard, C.B.' 3 # _citation.id primary _citation.title 'Disruption of the Putative Vascular Leak Peptide Sequence in the Stabilized Ricin Vaccine Candidate RTA1-33/44-198.' _citation.journal_abbrev 'Toxins (Basel)' _citation.journal_volume 5 _citation.page_first 224 _citation.page_last 248 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23364220 _citation.pdbx_database_id_DOI 10.3390/toxins5020224 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Janosi, L.' 1 primary 'Compton, J.R.' 2 primary 'Legler, P.M.' 3 primary 'Steele, K.E.' 4 primary 'Davis, J.M.' 5 primary 'Matyas, G.R.' 6 primary 'Millard, C.B.' 7 # _cell.entry_id 4IMV _cell.length_a 51.585 _cell.length_b 72.336 _cell.length_c 94.694 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IMV _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Ricin 21414.203 1 3.2.2.22 'R48C, T77C, D75N' 'unp residues 36-233' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 79 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ricin A chain, rRNA N-glycosidase, Linker peptide, Ricin B chain' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MIFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTVLPNCVGLPINQRFILVELSNHAELSVTLALNVCNAYVVGYRAGNS AYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLARSFI ICIQMISEAARFQYIEGEMRTRIRYNRRS ; _entity_poly.pdbx_seq_one_letter_code_can ;MIFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTVLPNCVGLPINQRFILVELSNHAELSVTLALNVCNAYVVGYRAGNS AYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLARSFI ICIQMISEAARFQYIEGEMRTRIRYNRRS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 PHE n 1 4 PRO n 1 5 LYS n 1 6 GLN n 1 7 TYR n 1 8 PRO n 1 9 ILE n 1 10 ILE n 1 11 ASN n 1 12 PHE n 1 13 THR n 1 14 THR n 1 15 ALA n 1 16 GLY n 1 17 ALA n 1 18 THR n 1 19 VAL n 1 20 GLN n 1 21 SER n 1 22 TYR n 1 23 THR n 1 24 ASN n 1 25 PHE n 1 26 ILE n 1 27 ARG n 1 28 ALA n 1 29 VAL n 1 30 ARG n 1 31 GLY n 1 32 ARG n 1 33 LEU n 1 34 THR n 1 35 VAL n 1 36 LEU n 1 37 PRO n 1 38 ASN n 1 39 CYS n 1 40 VAL n 1 41 GLY n 1 42 LEU n 1 43 PRO n 1 44 ILE n 1 45 ASN n 1 46 GLN n 1 47 ARG n 1 48 PHE n 1 49 ILE n 1 50 LEU n 1 51 VAL n 1 52 GLU n 1 53 LEU n 1 54 SER n 1 55 ASN n 1 56 HIS n 1 57 ALA n 1 58 GLU n 1 59 LEU n 1 60 SER n 1 61 VAL n 1 62 THR n 1 63 LEU n 1 64 ALA n 1 65 LEU n 1 66 ASN n 1 67 VAL n 1 68 CYS n 1 69 ASN n 1 70 ALA n 1 71 TYR n 1 72 VAL n 1 73 VAL n 1 74 GLY n 1 75 TYR n 1 76 ARG n 1 77 ALA n 1 78 GLY n 1 79 ASN n 1 80 SER n 1 81 ALA n 1 82 TYR n 1 83 PHE n 1 84 PHE n 1 85 HIS n 1 86 PRO n 1 87 ASP n 1 88 ASN n 1 89 GLN n 1 90 GLU n 1 91 ASP n 1 92 ALA n 1 93 GLU n 1 94 ALA n 1 95 ILE n 1 96 THR n 1 97 HIS n 1 98 LEU n 1 99 PHE n 1 100 THR n 1 101 ASP n 1 102 VAL n 1 103 GLN n 1 104 ASN n 1 105 ARG n 1 106 TYR n 1 107 THR n 1 108 PHE n 1 109 ALA n 1 110 PHE n 1 111 GLY n 1 112 GLY n 1 113 ASN n 1 114 TYR n 1 115 ASP n 1 116 ARG n 1 117 LEU n 1 118 GLU n 1 119 GLN n 1 120 LEU n 1 121 ALA n 1 122 GLY n 1 123 ASN n 1 124 LEU n 1 125 ARG n 1 126 GLU n 1 127 ASN n 1 128 ILE n 1 129 GLU n 1 130 LEU n 1 131 GLY n 1 132 ASN n 1 133 GLY n 1 134 PRO n 1 135 LEU n 1 136 GLU n 1 137 GLU n 1 138 ALA n 1 139 ILE n 1 140 SER n 1 141 ALA n 1 142 LEU n 1 143 TYR n 1 144 TYR n 1 145 TYR n 1 146 SER n 1 147 THR n 1 148 GLY n 1 149 GLY n 1 150 THR n 1 151 GLN n 1 152 LEU n 1 153 PRO n 1 154 THR n 1 155 LEU n 1 156 ALA n 1 157 ARG n 1 158 SER n 1 159 PHE n 1 160 ILE n 1 161 ILE n 1 162 CYS n 1 163 ILE n 1 164 GLN n 1 165 MET n 1 166 ILE n 1 167 SER n 1 168 GLU n 1 169 ALA n 1 170 ALA n 1 171 ARG n 1 172 PHE n 1 173 GLN n 1 174 TYR n 1 175 ILE n 1 176 GLU n 1 177 GLY n 1 178 GLU n 1 179 MET n 1 180 ARG n 1 181 THR n 1 182 ARG n 1 183 ILE n 1 184 ARG n 1 185 TYR n 1 186 ASN n 1 187 ARG n 1 188 ARG n 1 189 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Castor bean' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ricinus communis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3988 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RICI_RICCO _struct_ref.pdbx_db_accession P02879 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAY VVGYRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQ LPTLARSFIICIQMISEAARFQYIEGEMRTRIRYNRRS ; _struct_ref.pdbx_align_begin 36 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4IMV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 189 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02879 _struct_ref_seq.db_align_beg 36 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 233 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 198 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4IMV MET A 1 ? UNP P02879 ? ? 'INITIATING METHIONINE' 0 1 1 4IMV ? A ? ? UNP P02879 THR 69 DELETION ? 2 1 4IMV ? A ? ? UNP P02879 GLY 70 DELETION ? 3 1 4IMV ? A ? ? UNP P02879 ALA 71 DELETION ? 4 1 4IMV ? A ? ? UNP P02879 ASP 72 DELETION ? 5 1 4IMV ? A ? ? UNP P02879 VAL 73 DELETION ? 6 1 4IMV ? A ? ? UNP P02879 ARG 74 DELETION ? 7 1 4IMV ? A ? ? UNP P02879 HIS 75 DELETION ? 8 1 4IMV ? A ? ? UNP P02879 GLU 76 DELETION ? 9 1 4IMV ? A ? ? UNP P02879 ILE 77 DELETION ? 10 1 4IMV ? A ? ? UNP P02879 PRO 78 DELETION ? 11 1 4IMV CYS A 39 ? UNP P02879 ARG 83 'ENGINEERED MUTATION' 48 12 1 4IMV ASN A 66 ? UNP P02879 ASP 110 'ENGINEERED MUTATION' 75 13 1 4IMV CYS A 68 ? UNP P02879 THR 112 'ENGINEERED MUTATION' 77 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4IMV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_details '0.17 M Ammonium Sulfate, 25.5% (w/v) Peg 4000, 15% Glycerol , pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 150 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Bruker Platinum 135' _diffrn_detector.pdbx_collection_date 2012-06-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR-H' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 4IMV _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 57.48 _reflns.d_resolution_high 2.25 _reflns.number_obs 8640 _reflns.number_all 8721 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.1191 _reflns.pdbx_netI_over_sigmaI 13.01 _reflns.B_iso_Wilson_estimate 20.2 _reflns.pdbx_redundancy 6.88 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 91.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.4191 _reflns_shell.meanI_over_sigI_obs 3.62 _reflns_shell.pdbx_redundancy 4.18 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 939 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4IMV _refine.ls_number_reflns_obs 8233 _refine.ls_number_reflns_all 8721 _refine.pdbx_ls_sigma_I 3.0 _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 57.48 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 99.05 _refine.ls_R_factor_obs 0.21560 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21431 _refine.ls_R_factor_R_free 0.24229 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 405 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.923 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.B_iso_mean 23.598 _refine.aniso_B[1][1] -0.50 _refine.aniso_B[2][2] -0.94 _refine.aniso_B[3][3] 1.44 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.359 _refine.pdbx_overall_ESU_R_Free 0.229 _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1317 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 1401 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 57.48 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.015 0.019 ? 1350 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.000 0.020 ? 1250 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.369 1.950 ? 1837 ? 'X-RAY DIFFRACTION' r_angle_other_deg 3.614 3.001 ? 2844 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 3.177 5.000 ? 165 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 38.313 23.824 ? 68 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.653 15.000 ? 202 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 23.637 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.083 0.200 ? 207 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1566 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.012 0.020 ? 341 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.250 _refine_ls_shell.d_res_low 2.308 _refine_ls_shell.number_reflns_R_work 529 _refine_ls_shell.R_factor_R_work 0.277 _refine_ls_shell.percent_reflns_obs 89.92 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4IMV _struct.title 'Ricin A-chain variant 1-33/44-198 with engineered disulfide bond, R48C/T77C/D75N' _struct.pdbx_descriptor 'Ricin (E.C.3.2.2.22)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IMV _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Ricin, immunogen, vaccine, thermal stable, Ribosome Inactivating Protein (RIP), Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 18 ? GLY A 31 ? THR A 17 GLY A 30 1 ? 14 HELX_P HELX_P2 2 PRO A 43 ? GLN A 46 ? PRO A 52 GLN A 55 5 ? 4 HELX_P HELX_P3 3 ASN A 88 ? ILE A 95 ? ASN A 97 ILE A 104 1 ? 8 HELX_P HELX_P4 4 THR A 96 ? LEU A 98 ? THR A 105 LEU A 107 5 ? 3 HELX_P HELX_P5 5 ASN A 113 ? GLY A 122 ? ASN A 122 GLY A 131 1 ? 10 HELX_P HELX_P6 6 GLY A 131 ? SER A 146 ? GLY A 140 SER A 155 1 ? 16 HELX_P HELX_P7 7 GLN A 151 ? ILE A 166 ? GLN A 160 ILE A 175 1 ? 16 HELX_P HELX_P8 8 ILE A 166 ? GLU A 178 ? ILE A 175 GLU A 187 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 68 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 39 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 77 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 48 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.023 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 9 ? THR A 13 ? ILE A 8 THR A 12 A 2 PHE A 48 ? SER A 54 ? PHE A 57 SER A 63 A 3 SER A 60 ? ASN A 66 ? SER A 69 ASN A 75 A 4 VAL A 72 ? ALA A 77 ? VAL A 81 ALA A 86 A 5 SER A 80 ? PHE A 83 ? SER A 89 PHE A 92 A 6 ASN A 104 ? THR A 107 ? ASN A 113 THR A 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 10 ? N ILE A 9 O GLU A 52 ? O GLU A 61 A 2 3 N LEU A 53 ? N LEU A 62 O VAL A 61 ? O VAL A 70 A 3 4 N ALA A 64 ? N ALA A 73 O GLY A 74 ? O GLY A 83 A 4 5 N TYR A 75 ? N TYR A 84 O TYR A 82 ? O TYR A 91 A 5 6 N ALA A 81 ? N ALA A 90 O ASN A 104 ? O ASN A 113 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 56 ? HIS A 65 . ? 7_555 ? 2 AC1 6 PHE A 110 ? PHE A 119 . ? 1_555 ? 3 AC1 6 GLY A 111 ? GLY A 120 . ? 1_555 ? 4 AC1 6 ASN A 113 ? ASN A 122 . ? 1_555 ? 5 AC1 6 ARG A 116 ? ARG A 125 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 332 . ? 1_555 ? # _database_PDB_matrix.entry_id 4IMV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4IMV _atom_sites.fract_transf_matrix[1][1] 0.019385 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013824 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010560 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 ILE 2 1 ? ? ? A . n A 1 3 PHE 3 2 ? ? ? A . n A 1 4 PRO 4 3 ? ? ? A . n A 1 5 LYS 5 4 ? ? ? A . n A 1 6 GLN 6 5 ? ? ? A . n A 1 7 TYR 7 6 6 TYR TYR A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 ILE 9 8 8 ILE ILE A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 ASN 11 10 10 ASN ASN A . n A 1 12 PHE 12 11 11 PHE PHE A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 TYR 22 21 21 TYR TYR A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 GLY 31 30 30 GLY GLY A . n A 1 32 ARG 32 31 31 ARG ARG A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 VAL 35 44 44 VAL VAL A . n A 1 36 LEU 36 45 45 LEU LEU A . n A 1 37 PRO 37 46 46 PRO PRO A . n A 1 38 ASN 38 47 47 ASN ASN A . n A 1 39 CYS 39 48 48 CYS CYS A . n A 1 40 VAL 40 49 49 VAL VAL A . n A 1 41 GLY 41 50 50 GLY GLY A . n A 1 42 LEU 42 51 51 LEU LEU A . n A 1 43 PRO 43 52 52 PRO PRO A . n A 1 44 ILE 44 53 53 ILE ILE A . n A 1 45 ASN 45 54 54 ASN ASN A . n A 1 46 GLN 46 55 55 GLN GLN A . n A 1 47 ARG 47 56 56 ARG ARG A . n A 1 48 PHE 48 57 57 PHE PHE A . n A 1 49 ILE 49 58 58 ILE ILE A . n A 1 50 LEU 50 59 59 LEU LEU A . n A 1 51 VAL 51 60 60 VAL VAL A . n A 1 52 GLU 52 61 61 GLU GLU A . n A 1 53 LEU 53 62 62 LEU LEU A . n A 1 54 SER 54 63 63 SER SER A . n A 1 55 ASN 55 64 64 ASN ASN A . n A 1 56 HIS 56 65 65 HIS HIS A . n A 1 57 ALA 57 66 66 ALA ALA A . n A 1 58 GLU 58 67 67 GLU GLU A . n A 1 59 LEU 59 68 68 LEU LEU A . n A 1 60 SER 60 69 69 SER SER A . n A 1 61 VAL 61 70 70 VAL VAL A . n A 1 62 THR 62 71 71 THR THR A . n A 1 63 LEU 63 72 72 LEU LEU A . n A 1 64 ALA 64 73 73 ALA ALA A . n A 1 65 LEU 65 74 74 LEU LEU A . n A 1 66 ASN 66 75 75 ASN ASN A . n A 1 67 VAL 67 76 76 VAL VAL A . n A 1 68 CYS 68 77 77 CYS CYS A . n A 1 69 ASN 69 78 78 ASN ASN A . n A 1 70 ALA 70 79 79 ALA ALA A . n A 1 71 TYR 71 80 80 TYR TYR A . n A 1 72 VAL 72 81 81 VAL VAL A . n A 1 73 VAL 73 82 82 VAL VAL A . n A 1 74 GLY 74 83 83 GLY GLY A . n A 1 75 TYR 75 84 84 TYR TYR A . n A 1 76 ARG 76 85 85 ARG ARG A . n A 1 77 ALA 77 86 86 ALA ALA A . n A 1 78 GLY 78 87 87 GLY GLY A . n A 1 79 ASN 79 88 88 ASN ASN A . n A 1 80 SER 80 89 89 SER SER A . n A 1 81 ALA 81 90 90 ALA ALA A . n A 1 82 TYR 82 91 91 TYR TYR A . n A 1 83 PHE 83 92 92 PHE PHE A . n A 1 84 PHE 84 93 93 PHE PHE A . n A 1 85 HIS 85 94 94 HIS HIS A . n A 1 86 PRO 86 95 95 PRO PRO A . n A 1 87 ASP 87 96 96 ASP ASP A . n A 1 88 ASN 88 97 97 ASN ASN A . n A 1 89 GLN 89 98 98 GLN GLN A . n A 1 90 GLU 90 99 99 GLU GLU A . n A 1 91 ASP 91 100 100 ASP ASP A . n A 1 92 ALA 92 101 101 ALA ALA A . n A 1 93 GLU 93 102 102 GLU GLU A . n A 1 94 ALA 94 103 103 ALA ALA A . n A 1 95 ILE 95 104 104 ILE ILE A . n A 1 96 THR 96 105 105 THR THR A . n A 1 97 HIS 97 106 106 HIS HIS A . n A 1 98 LEU 98 107 107 LEU LEU A . n A 1 99 PHE 99 108 108 PHE PHE A . n A 1 100 THR 100 109 109 THR THR A . n A 1 101 ASP 101 110 110 ASP ASP A . n A 1 102 VAL 102 111 111 VAL VAL A . n A 1 103 GLN 103 112 112 GLN GLN A . n A 1 104 ASN 104 113 113 ASN ASN A . n A 1 105 ARG 105 114 114 ARG ARG A . n A 1 106 TYR 106 115 115 TYR TYR A . n A 1 107 THR 107 116 116 THR THR A . n A 1 108 PHE 108 117 117 PHE PHE A . n A 1 109 ALA 109 118 118 ALA ALA A . n A 1 110 PHE 110 119 119 PHE PHE A . n A 1 111 GLY 111 120 120 GLY GLY A . n A 1 112 GLY 112 121 121 GLY GLY A . n A 1 113 ASN 113 122 122 ASN ASN A . n A 1 114 TYR 114 123 123 TYR TYR A . n A 1 115 ASP 115 124 124 ASP ASP A . n A 1 116 ARG 116 125 125 ARG ARG A . n A 1 117 LEU 117 126 126 LEU LEU A . n A 1 118 GLU 118 127 127 GLU GLU A . n A 1 119 GLN 119 128 128 GLN GLN A . n A 1 120 LEU 120 129 129 LEU LEU A . n A 1 121 ALA 121 130 130 ALA ALA A . n A 1 122 GLY 122 131 131 GLY GLY A . n A 1 123 ASN 123 132 ? ? ? A . n A 1 124 LEU 124 133 ? ? ? A . n A 1 125 ARG 125 134 ? ? ? A . n A 1 126 GLU 126 135 ? ? ? A . n A 1 127 ASN 127 136 ? ? ? A . n A 1 128 ILE 128 137 137 ILE ILE A . n A 1 129 GLU 129 138 138 GLU GLU A . n A 1 130 LEU 130 139 139 LEU LEU A . n A 1 131 GLY 131 140 140 GLY GLY A . n A 1 132 ASN 132 141 141 ASN ASN A . n A 1 133 GLY 133 142 142 GLY GLY A . n A 1 134 PRO 134 143 143 PRO PRO A . n A 1 135 LEU 135 144 144 LEU LEU A . n A 1 136 GLU 136 145 145 GLU GLU A . n A 1 137 GLU 137 146 146 GLU GLU A . n A 1 138 ALA 138 147 147 ALA ALA A . n A 1 139 ILE 139 148 148 ILE ILE A . n A 1 140 SER 140 149 149 SER SER A . n A 1 141 ALA 141 150 150 ALA ALA A . n A 1 142 LEU 142 151 151 LEU LEU A . n A 1 143 TYR 143 152 152 TYR TYR A . n A 1 144 TYR 144 153 153 TYR TYR A . n A 1 145 TYR 145 154 154 TYR TYR A . n A 1 146 SER 146 155 155 SER SER A . n A 1 147 THR 147 156 156 THR THR A . n A 1 148 GLY 148 157 157 GLY GLY A . n A 1 149 GLY 149 158 158 GLY GLY A . n A 1 150 THR 150 159 159 THR THR A . n A 1 151 GLN 151 160 160 GLN GLN A . n A 1 152 LEU 152 161 161 LEU LEU A . n A 1 153 PRO 153 162 162 PRO PRO A . n A 1 154 THR 154 163 163 THR THR A . n A 1 155 LEU 155 164 164 LEU LEU A . n A 1 156 ALA 156 165 165 ALA ALA A . n A 1 157 ARG 157 166 166 ARG ARG A . n A 1 158 SER 158 167 167 SER SER A . n A 1 159 PHE 159 168 168 PHE PHE A . n A 1 160 ILE 160 169 169 ILE ILE A . n A 1 161 ILE 161 170 170 ILE ILE A . n A 1 162 CYS 162 171 171 CYS CYS A . n A 1 163 ILE 163 172 172 ILE ILE A . n A 1 164 GLN 164 173 173 GLN GLN A . n A 1 165 MET 165 174 174 MET MET A . n A 1 166 ILE 166 175 175 ILE ILE A . n A 1 167 SER 167 176 176 SER SER A . n A 1 168 GLU 168 177 177 GLU GLU A . n A 1 169 ALA 169 178 178 ALA ALA A . n A 1 170 ALA 170 179 179 ALA ALA A . n A 1 171 ARG 171 180 180 ARG ARG A . n A 1 172 PHE 172 181 181 PHE PHE A . n A 1 173 GLN 173 182 182 GLN GLN A . n A 1 174 TYR 174 183 183 TYR TYR A . n A 1 175 ILE 175 184 184 ILE ILE A . n A 1 176 GLU 176 185 185 GLU GLU A . n A 1 177 GLY 177 186 186 GLY GLY A . n A 1 178 GLU 178 187 187 GLU GLU A . n A 1 179 MET 179 188 188 MET MET A . n A 1 180 ARG 180 189 ? ? ? A . n A 1 181 THR 181 190 ? ? ? A . n A 1 182 ARG 182 191 ? ? ? A . n A 1 183 ILE 183 192 ? ? ? A . n A 1 184 ARG 184 193 ? ? ? A . n A 1 185 TYR 185 194 ? ? ? A . n A 1 186 ASN 186 195 ? ? ? A . n A 1 187 ARG 187 196 ? ? ? A . n A 1 188 ARG 188 197 ? ? ? A . n A 1 189 SER 189 198 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-02-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal 'PROTEUM PLUS' 'data collection' PLUS ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 'PROTEUM PLUS' 'data reduction' PLUS ? 4 'PROTEUM PLUS' 'data scaling' PLUS ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 64 ? ? -116.92 -164.17 2 1 ALA A 79 ? ? 73.58 -5.04 3 1 ASN A 97 ? ? -166.94 -166.64 4 1 ILE A 175 ? ? -122.78 -70.62 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A ILE 1 ? A ILE 2 3 1 Y 1 A PHE 2 ? A PHE 3 4 1 Y 1 A PRO 3 ? A PRO 4 5 1 Y 1 A LYS 4 ? A LYS 5 6 1 Y 1 A GLN 5 ? A GLN 6 7 1 Y 1 A ASN 132 ? A ASN 123 8 1 Y 1 A LEU 133 ? A LEU 124 9 1 Y 1 A ARG 134 ? A ARG 125 10 1 Y 1 A GLU 135 ? A GLU 126 11 1 Y 1 A ASN 136 ? A ASN 127 12 1 Y 1 A ARG 189 ? A ARG 180 13 1 Y 1 A THR 190 ? A THR 181 14 1 Y 1 A ARG 191 ? A ARG 182 15 1 Y 1 A ILE 192 ? A ILE 183 16 1 Y 1 A ARG 193 ? A ARG 184 17 1 Y 1 A TYR 194 ? A TYR 185 18 1 Y 1 A ASN 195 ? A ASN 186 19 1 Y 1 A ARG 196 ? A ARG 187 20 1 Y 1 A ARG 197 ? A ARG 188 21 1 Y 1 A SER 198 ? A SER 189 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 999 SO4 SO4 A . C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 2 HOH HOH A . C 3 HOH 3 303 3 HOH HOH A . C 3 HOH 4 304 4 HOH HOH A . C 3 HOH 5 305 5 HOH HOH A . C 3 HOH 6 306 6 HOH HOH A . C 3 HOH 7 307 7 HOH HOH A . C 3 HOH 8 308 8 HOH HOH A . C 3 HOH 9 309 9 HOH HOH A . C 3 HOH 10 310 10 HOH HOH A . C 3 HOH 11 311 11 HOH HOH A . C 3 HOH 12 312 12 HOH HOH A . C 3 HOH 13 313 13 HOH HOH A . C 3 HOH 14 314 14 HOH HOH A . C 3 HOH 15 315 15 HOH HOH A . C 3 HOH 16 316 16 HOH HOH A . C 3 HOH 17 317 17 HOH HOH A . C 3 HOH 18 318 18 HOH HOH A . C 3 HOH 19 319 19 HOH HOH A . C 3 HOH 20 320 20 HOH HOH A . C 3 HOH 21 321 21 HOH HOH A . C 3 HOH 22 322 22 HOH HOH A . C 3 HOH 23 323 23 HOH HOH A . C 3 HOH 24 324 24 HOH HOH A . C 3 HOH 25 325 25 HOH HOH A . C 3 HOH 26 326 26 HOH HOH A . C 3 HOH 27 327 27 HOH HOH A . C 3 HOH 28 328 28 HOH HOH A . C 3 HOH 29 329 29 HOH HOH A . C 3 HOH 30 330 30 HOH HOH A . C 3 HOH 31 331 31 HOH HOH A . C 3 HOH 32 332 32 HOH HOH A . C 3 HOH 33 333 33 HOH HOH A . C 3 HOH 34 334 34 HOH HOH A . C 3 HOH 35 335 35 HOH HOH A . C 3 HOH 36 336 36 HOH HOH A . C 3 HOH 37 337 37 HOH HOH A . C 3 HOH 38 338 38 HOH HOH A . C 3 HOH 39 339 39 HOH HOH A . C 3 HOH 40 340 40 HOH HOH A . C 3 HOH 41 341 41 HOH HOH A . C 3 HOH 42 342 42 HOH HOH A . C 3 HOH 43 343 43 HOH HOH A . C 3 HOH 44 344 44 HOH HOH A . C 3 HOH 45 345 45 HOH HOH A . C 3 HOH 46 346 46 HOH HOH A . C 3 HOH 47 347 47 HOH HOH A . C 3 HOH 48 348 48 HOH HOH A . C 3 HOH 49 349 49 HOH HOH A . C 3 HOH 50 350 50 HOH HOH A . C 3 HOH 51 351 51 HOH HOH A . C 3 HOH 52 352 52 HOH HOH A . C 3 HOH 53 353 53 HOH HOH A . C 3 HOH 54 354 54 HOH HOH A . C 3 HOH 55 355 55 HOH HOH A . C 3 HOH 56 356 56 HOH HOH A . C 3 HOH 57 357 57 HOH HOH A . C 3 HOH 58 358 58 HOH HOH A . C 3 HOH 59 359 59 HOH HOH A . C 3 HOH 60 360 60 HOH HOH A . C 3 HOH 61 361 61 HOH HOH A . C 3 HOH 62 362 62 HOH HOH A . C 3 HOH 63 363 63 HOH HOH A . C 3 HOH 64 364 64 HOH HOH A . C 3 HOH 65 365 65 HOH HOH A . C 3 HOH 66 366 66 HOH HOH A . C 3 HOH 67 367 67 HOH HOH A . C 3 HOH 68 368 68 HOH HOH A . C 3 HOH 69 369 69 HOH HOH A . C 3 HOH 70 370 70 HOH HOH A . C 3 HOH 71 371 71 HOH HOH A . C 3 HOH 72 372 72 HOH HOH A . C 3 HOH 73 373 73 HOH HOH A . C 3 HOH 74 374 74 HOH HOH A . C 3 HOH 75 375 75 HOH HOH A . C 3 HOH 76 376 76 HOH HOH A . C 3 HOH 77 377 77 HOH HOH A . C 3 HOH 78 378 78 HOH HOH A . C 3 HOH 79 379 79 HOH HOH A . #