HEADER TRANSFERASE 04-JAN-13 4INE TITLE CRYSTAL STRUCTURE OF N-METHYL TRANSFERASE (PMT-2) FROM CAENORHABDITIS TITLE 2 ELEGANT COMPLEXED WITH S-ADENOSYL HOMOCYSTEINE AND TITLE 3 PHOSPHOETHANOLAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PMT-2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: PMT-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS METHYL TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.LUKK,S.K.NAIR REVDAT 2 20-SEP-23 4INE 1 REMARK SEQADV LINK REVDAT 1 15-JAN-14 4INE 0 JRNL AUTH T.LUKK,S.K.NAIR JRNL TITL CRYSTAL STRUCTURE OF N-METHYL TRANSFERASE (PMT-2) FROM JRNL TITL 2 CAENORHABDITIS ELEGANT COMPLEXED WITH S-ADENOSYL JRNL TITL 3 HOMOCYSTEINE AND PHOSPHOETHANOLAMINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 152982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3471 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 27.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 1086 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7239 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9802 ; 1.287 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 878 ; 5.746 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 367 ;34.602 ;24.578 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1242 ;13.391 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1083 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5526 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 4INE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 172409 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3UJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION WAS AT 15 MG/ML REMARK 280 CONTAINING 20 MM TRIS (PH 7.5), 100 MM NACL, 10 MM EDTA AND 10 REMARK 280 MM BME, 5 MM SAH, 5 MM PHOSPHOETHANOLAMINE. MOTHER LIQUEUR REMARK 280 CONTAINED 0.04 M POTASSIUM PHOSPHATE (MONOBASIC), 16% PEG 8,000 REMARK 280 AND 20% V/V GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 436 REMARK 465 LYS A 437 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 19 REMARK 465 GLY B 20 REMARK 465 ARG B 21 REMARK 465 PRO B 436 REMARK 465 LYS B 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 711 O HOH B 1007 2.18 REMARK 500 O HOH B 736 O HOH B 980 2.19 REMARK 500 OE1 GLU A 270 O HOH A 895 2.19 REMARK 500 O HOH B 1016 O HOH B 1037 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN B 80 C ALA B 81 N 0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 185 -88.85 -120.28 REMARK 500 ASN A 202 -0.08 75.96 REMARK 500 ASN A 202 -0.08 76.12 REMARK 500 GLU A 270 78.49 -112.78 REMARK 500 ASP A 272 102.65 -160.36 REMARK 500 THR B 185 -89.68 -117.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 18 GLU A 19 -135.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OPE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OPE B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 503 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SPECIFIC CLONE IS AN ISOFORM OF THE SEQUENCE OF UNP ENTRY REMARK 999 Q22993. RESIDUES LYS 89 AND ASN 93 ARE LINKED TOGETHER DBREF 4INE A 1 437 UNP Q22993 Q22993_CAEEL 1 437 DBREF 4INE B 1 437 UNP Q22993 Q22993_CAEEL 1 437 SEQADV 4INE MET A -19 UNP Q22993 INITIATING METHIONINE SEQADV 4INE GLY A -18 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER A -17 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER A -16 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS A -15 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS A -14 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS A -13 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS A -12 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS A -11 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS A -10 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER A -9 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER A -8 UNP Q22993 EXPRESSION TAG SEQADV 4INE GLY A -7 UNP Q22993 EXPRESSION TAG SEQADV 4INE LEU A -6 UNP Q22993 EXPRESSION TAG SEQADV 4INE VAL A -5 UNP Q22993 EXPRESSION TAG SEQADV 4INE PRO A -4 UNP Q22993 EXPRESSION TAG SEQADV 4INE ARG A -3 UNP Q22993 EXPRESSION TAG SEQADV 4INE GLY A -2 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER A -1 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS A 0 UNP Q22993 EXPRESSION TAG SEQADV 4INE A UNP Q22993 ASN 90 SEE REMARK 999 SEQADV 4INE A UNP Q22993 ALA 91 SEE REMARK 999 SEQADV 4INE A UNP Q22993 THR 92 SEE REMARK 999 SEQADV 4INE MET B -19 UNP Q22993 INITIATING METHIONINE SEQADV 4INE GLY B -18 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER B -17 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER B -16 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS B -15 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS B -14 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS B -13 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS B -12 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS B -11 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS B -10 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER B -9 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER B -8 UNP Q22993 EXPRESSION TAG SEQADV 4INE GLY B -7 UNP Q22993 EXPRESSION TAG SEQADV 4INE LEU B -6 UNP Q22993 EXPRESSION TAG SEQADV 4INE VAL B -5 UNP Q22993 EXPRESSION TAG SEQADV 4INE PRO B -4 UNP Q22993 EXPRESSION TAG SEQADV 4INE ARG B -3 UNP Q22993 EXPRESSION TAG SEQADV 4INE GLY B -2 UNP Q22993 EXPRESSION TAG SEQADV 4INE SER B -1 UNP Q22993 EXPRESSION TAG SEQADV 4INE HIS B 0 UNP Q22993 EXPRESSION TAG SEQADV 4INE B UNP Q22993 ASN 90 SEE REMARK 999 SEQADV 4INE B UNP Q22993 ALA 91 SEE REMARK 999 SEQADV 4INE B UNP Q22993 THR 92 SEE REMARK 999 SEQRES 1 A 454 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 454 LEU VAL PRO ARG GLY SER HIS MET SER SER LEU SER ILE SEQRES 3 A 454 PRO ARG GLN SER LEU TYR TYR VAL ASN LYS VAL THR GLU SEQRES 4 A 454 GLY ARG SER VAL SER ASN VAL GLN VAL VAL SER PRO CYS SEQRES 5 A 454 GLN LYS GLN GLY GLN THR TYR VAL THR ALA PHE THR PRO SEQRES 6 A 454 LEU THR SER ASN VAL GLN VAL HIS THR SER LEU GLU GLN SEQRES 7 A 454 LEU SER THR ILE ARG ASN ALA ASP VAL LEU ILE PHE ASN SEQRES 8 A 454 ASN ALA LEU SER GLN ILE ILE THR ASN ALA ASP LEU LEU SEQRES 9 A 454 THR ASP PHE LEU LYS ASN ALA THR ALA ILE GLY GLY THR SEQRES 10 A 454 VAL ILE ILE ARG GLU ASP LEU LYS ASP CYS SER ASP LYS SEQRES 11 A 454 ARG GLN VAL ALA ARG LEU THR ASP TYR PHE ASP VAL PHE SEQRES 12 A 454 ARG THR THR ASP SER ASP GLY ASN ASN THR GLY LEU ASP SEQRES 13 A 454 LEU TYR THR VAL ASP GLN VAL GLU HIS SER ASN TYR VAL SEQRES 14 A 454 GLU GLN ASN PHE LEU ASP PHE ILE PHE VAL PHE ARG LYS SEQRES 15 A 454 LYS VAL PHE ALA PRO THR THR ASP ALA THR ILE THR PHE SEQRES 16 A 454 ARG ASP PHE LEU ASP LYS THR GLN TYR THR ASN THR GLY SEQRES 17 A 454 ILE ASP ALA TYR GLU TRP MET PHE GLY VAL ASN PHE ILE SEQRES 18 A 454 SER PRO GLY GLY TYR ASP GLU ASN LEU LYS ILE ILE LYS SEQRES 19 A 454 ARG PHE GLY ASP PHE LYS PRO GLY GLN THR MET LEU ASP SEQRES 20 A 454 ILE GLY VAL GLY ILE GLY GLY GLY ALA ARG GLN VAL ALA SEQRES 21 A 454 ASP GLU PHE GLY VAL HIS VAL HIS GLY ILE ASP LEU SER SEQRES 22 A 454 SER ASN MET LEU ALA ILE ALA LEU GLU ARG LEU HIS GLU SEQRES 23 A 454 GLU LYS ASP SER ARG VAL LYS TYR SER ILE THR ASP ALA SEQRES 24 A 454 LEU VAL TYR GLN PHE GLU ASP ASN SER PHE ASP TYR VAL SEQRES 25 A 454 PHE SER ARG ASP CYS ILE GLN HIS ILE PRO ASP THR GLU SEQRES 26 A 454 LYS LEU PHE SER ARG ILE TYR LYS ALA LEU LYS PRO GLY SEQRES 27 A 454 GLY LYS VAL LEU ILE THR MET TYR GLY LYS GLY TYR GLY SEQRES 28 A 454 GLU GLN SER ASP LYS PHE LYS THR TYR VAL ALA GLN ARG SEQRES 29 A 454 ALA TYR PHE LEU LYS ASN LEU LYS GLU ILE ALA ASP ILE SEQRES 30 A 454 ALA ASN LYS THR GLY PHE VAL ASN VAL GLN THR GLU ASN SEQRES 31 A 454 MET THR PRO ARG PHE LYS GLU ILE LEU LEU GLU GLU ARG SEQRES 32 A 454 GLY HIS LEU GLU GLN ASN GLU ALA GLU PHE MET SER LYS SEQRES 33 A 454 PHE THR GLN ARG GLU ARG ASP SER LEU ILE SER GLY TRP SEQRES 34 A 454 THR ASP LYS LEU GLY TYR ILE GLU LYS ASP ASN HIS ASN SEQRES 35 A 454 TRP ASN PHE PHE LEU ALA GLN LYS PRO PHE PRO LYS SEQRES 1 B 454 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 454 LEU VAL PRO ARG GLY SER HIS MET SER SER LEU SER ILE SEQRES 3 B 454 PRO ARG GLN SER LEU TYR TYR VAL ASN LYS VAL THR GLU SEQRES 4 B 454 GLY ARG SER VAL SER ASN VAL GLN VAL VAL SER PRO CYS SEQRES 5 B 454 GLN LYS GLN GLY GLN THR TYR VAL THR ALA PHE THR PRO SEQRES 6 B 454 LEU THR SER ASN VAL GLN VAL HIS THR SER LEU GLU GLN SEQRES 7 B 454 LEU SER THR ILE ARG ASN ALA ASP VAL LEU ILE PHE ASN SEQRES 8 B 454 ASN ALA LEU SER GLN ILE ILE THR ASN ALA ASP LEU LEU SEQRES 9 B 454 THR ASP PHE LEU LYS ASN ALA THR ALA ILE GLY GLY THR SEQRES 10 B 454 VAL ILE ILE ARG GLU ASP LEU LYS ASP CYS SER ASP LYS SEQRES 11 B 454 ARG GLN VAL ALA ARG LEU THR ASP TYR PHE ASP VAL PHE SEQRES 12 B 454 ARG THR THR ASP SER ASP GLY ASN ASN THR GLY LEU ASP SEQRES 13 B 454 LEU TYR THR VAL ASP GLN VAL GLU HIS SER ASN TYR VAL SEQRES 14 B 454 GLU GLN ASN PHE LEU ASP PHE ILE PHE VAL PHE ARG LYS SEQRES 15 B 454 LYS VAL PHE ALA PRO THR THR ASP ALA THR ILE THR PHE SEQRES 16 B 454 ARG ASP PHE LEU ASP LYS THR GLN TYR THR ASN THR GLY SEQRES 17 B 454 ILE ASP ALA TYR GLU TRP MET PHE GLY VAL ASN PHE ILE SEQRES 18 B 454 SER PRO GLY GLY TYR ASP GLU ASN LEU LYS ILE ILE LYS SEQRES 19 B 454 ARG PHE GLY ASP PHE LYS PRO GLY GLN THR MET LEU ASP SEQRES 20 B 454 ILE GLY VAL GLY ILE GLY GLY GLY ALA ARG GLN VAL ALA SEQRES 21 B 454 ASP GLU PHE GLY VAL HIS VAL HIS GLY ILE ASP LEU SER SEQRES 22 B 454 SER ASN MET LEU ALA ILE ALA LEU GLU ARG LEU HIS GLU SEQRES 23 B 454 GLU LYS ASP SER ARG VAL LYS TYR SER ILE THR ASP ALA SEQRES 24 B 454 LEU VAL TYR GLN PHE GLU ASP ASN SER PHE ASP TYR VAL SEQRES 25 B 454 PHE SER ARG ASP CYS ILE GLN HIS ILE PRO ASP THR GLU SEQRES 26 B 454 LYS LEU PHE SER ARG ILE TYR LYS ALA LEU LYS PRO GLY SEQRES 27 B 454 GLY LYS VAL LEU ILE THR MET TYR GLY LYS GLY TYR GLY SEQRES 28 B 454 GLU GLN SER ASP LYS PHE LYS THR TYR VAL ALA GLN ARG SEQRES 29 B 454 ALA TYR PHE LEU LYS ASN LEU LYS GLU ILE ALA ASP ILE SEQRES 30 B 454 ALA ASN LYS THR GLY PHE VAL ASN VAL GLN THR GLU ASN SEQRES 31 B 454 MET THR PRO ARG PHE LYS GLU ILE LEU LEU GLU GLU ARG SEQRES 32 B 454 GLY HIS LEU GLU GLN ASN GLU ALA GLU PHE MET SER LYS SEQRES 33 B 454 PHE THR GLN ARG GLU ARG ASP SER LEU ILE SER GLY TRP SEQRES 34 B 454 THR ASP LYS LEU GLY TYR ILE GLU LYS ASP ASN HIS ASN SEQRES 35 B 454 TRP ASN PHE PHE LEU ALA GLN LYS PRO PHE PRO LYS HET SAH A 501 26 HET OPE A 502 8 HET BME A 503 4 HET SAH B 501 26 HET OPE B 502 8 HET BME B 503 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM OPE PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER HETNAM BME BETA-MERCAPTOETHANOL HETSYN OPE COLAMINE PHOSPHORIC ACID FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 OPE 2(C2 H8 N O4 P) FORMUL 5 BME 2(C2 H6 O S) FORMUL 9 HOH *1086(H2 O) HELIX 1 1 LEU A 4 THR A 18 1 15 HELIX 2 2 CYS A 32 THR A 44 1 13 HELIX 3 3 SER A 55 LEU A 59 5 5 HELIX 4 4 ASN A 80 ILE A 97 1 15 HELIX 5 5 ARG A 114 PHE A 126 1 13 HELIX 6 6 VAL A 146 VAL A 152 1 7 HELIX 7 7 THR A 177 THR A 185 1 9 HELIX 8 8 THR A 188 GLY A 200 1 13 HELIX 9 9 GLY A 207 LYS A 217 1 11 HELIX 10 10 ARG A 218 GLY A 220 5 3 HELIX 11 11 GLY A 236 GLY A 247 1 12 HELIX 12 12 SER A 256 GLU A 270 1 15 HELIX 13 13 CYS A 300 ILE A 304 5 5 HELIX 14 14 ASP A 306 ALA A 317 1 12 HELIX 15 15 SER A 337 ALA A 348 1 12 HELIX 16 16 ASN A 353 GLY A 365 1 13 HELIX 17 17 MET A 374 ASN A 392 1 19 HELIX 18 18 ASN A 392 PHE A 400 1 9 HELIX 19 19 THR A 401 LYS A 421 1 21 HELIX 20 20 LEU B 4 THR B 18 1 15 HELIX 21 21 CYS B 32 THR B 44 1 13 HELIX 22 22 SER B 55 SER B 60 5 6 HELIX 23 23 ASN B 80 ILE B 97 1 15 HELIX 24 24 ARG B 114 PHE B 126 1 13 HELIX 25 25 VAL B 146 VAL B 152 1 7 HELIX 26 26 THR B 177 THR B 185 1 9 HELIX 27 27 THR B 188 GLY B 200 1 13 HELIX 28 28 GLY B 207 LYS B 217 1 11 HELIX 29 29 ARG B 218 GLY B 220 5 3 HELIX 30 30 GLY B 236 GLY B 247 1 12 HELIX 31 31 SER B 256 GLU B 270 1 15 HELIX 32 32 CYS B 300 ILE B 304 5 5 HELIX 33 33 ASP B 306 ALA B 317 1 12 HELIX 34 34 SER B 337 ALA B 348 1 12 HELIX 35 35 ASN B 353 GLY B 365 1 13 HELIX 36 36 MET B 374 GLN B 391 1 18 HELIX 37 37 ASN B 392 SER B 398 1 7 HELIX 38 38 THR B 401 LYS B 421 1 21 SHEET 1 A 7 VAL A 50 HIS A 53 0 SHEET 2 A 7 VAL A 26 VAL A 29 1 N VAL A 28 O GLN A 51 SHEET 3 A 7 ALA A 65 ASN A 71 1 O ILE A 69 N VAL A 29 SHEET 4 A 7 GLY A 98 ASP A 106 1 O ARG A 104 N PHE A 70 SHEET 5 A 7 ASP A 158 VAL A 167 -1 O LYS A 165 N GLY A 99 SHEET 6 A 7 ASN A 135 GLN A 145 -1 N ASP A 144 O ILE A 160 SHEET 7 A 7 THR A 128 THR A 129 -1 N THR A 128 O THR A 136 SHEET 1 B13 VAL A 50 HIS A 53 0 SHEET 2 B13 VAL A 26 VAL A 29 1 N VAL A 28 O GLN A 51 SHEET 3 B13 ALA A 65 ASN A 71 1 O ILE A 69 N VAL A 29 SHEET 4 B13 GLY A 98 ASP A 106 1 O ARG A 104 N PHE A 70 SHEET 5 B13 ASP A 158 VAL A 167 -1 O LYS A 165 N GLY A 99 SHEET 6 B13 ASN A 135 GLN A 145 -1 N ASP A 144 O ILE A 160 SHEET 7 B13 VAL A 275 ILE A 279 -1 O ILE A 279 N VAL A 143 SHEET 8 B13 HIS A 249 ASP A 254 1 N GLY A 252 O LYS A 276 SHEET 9 B13 THR A 227 ILE A 231 1 N MET A 228 O HIS A 251 SHEET 10 B13 PHE A 292 ARG A 298 1 O PHE A 296 N LEU A 229 SHEET 11 B13 LEU A 318 LYS A 331 1 O LYS A 319 N PHE A 292 SHEET 12 B13 HIS A 424 GLN A 432 -1 O PHE A 429 N ILE A 326 SHEET 13 B13 VAL A 367 ASN A 373 -1 N VAL A 367 O GLN A 432 SHEET 1 C 7 VAL B 50 HIS B 53 0 SHEET 2 C 7 VAL B 26 VAL B 29 1 N VAL B 28 O GLN B 51 SHEET 3 C 7 ALA B 65 ASN B 71 1 O ILE B 69 N VAL B 29 SHEET 4 C 7 GLY B 98 ASP B 106 1 O ARG B 104 N PHE B 70 SHEET 5 C 7 ASP B 158 VAL B 167 -1 O LYS B 165 N GLY B 99 SHEET 6 C 7 ASN B 135 GLN B 145 -1 N TYR B 141 O VAL B 162 SHEET 7 C 7 THR B 128 THR B 129 -1 N THR B 128 O THR B 136 SHEET 1 D13 VAL B 50 HIS B 53 0 SHEET 2 D13 VAL B 26 VAL B 29 1 N VAL B 28 O GLN B 51 SHEET 3 D13 ALA B 65 ASN B 71 1 O ILE B 69 N VAL B 29 SHEET 4 D13 GLY B 98 ASP B 106 1 O ARG B 104 N PHE B 70 SHEET 5 D13 ASP B 158 VAL B 167 -1 O LYS B 165 N GLY B 99 SHEET 6 D13 ASN B 135 GLN B 145 -1 N TYR B 141 O VAL B 162 SHEET 7 D13 VAL B 275 ILE B 279 -1 O ILE B 279 N VAL B 143 SHEET 8 D13 HIS B 249 ASP B 254 1 N GLY B 252 O LYS B 276 SHEET 9 D13 THR B 227 ILE B 231 1 N ASP B 230 O ILE B 253 SHEET 10 D13 PHE B 292 ARG B 298 1 O PHE B 296 N LEU B 229 SHEET 11 D13 LEU B 318 LYS B 331 1 O LYS B 319 N PHE B 292 SHEET 12 D13 HIS B 424 GLN B 432 -1 O PHE B 429 N ILE B 326 SHEET 13 D13 VAL B 367 ASN B 373 -1 N GLN B 370 O LEU B 430 LINK SG CYS A 110 S2 BME A 503 1555 1555 1.98 LINK SG CYS B 110 S2 BME B 503 1555 1555 1.98 SITE 1 AC1 21 LEU A 182 TYR A 187 ILE A 204 SER A 205 SITE 2 AC1 21 GLY A 232 GLY A 234 ASP A 254 LEU A 255 SITE 3 AC1 21 SER A 256 MET A 259 THR A 280 ASP A 281 SITE 4 AC1 21 ALA A 282 ARG A 298 ASP A 299 CYS A 300 SITE 5 AC1 21 HIS A 303 HOH A 630 HOH A 634 HOH A 635 SITE 6 AC1 21 HOH A 636 SITE 1 AC2 11 GLN A 186 TYR A 187 TYR A 195 TYR A 329 SITE 2 AC2 11 TYR A 343 ARG A 347 TYR A 349 LYS A 415 SITE 3 AC2 11 HOH A 616 HOH A 640 HOH A 655 SITE 1 AC3 2 CYS A 110 HOH A 719 SITE 1 AC4 20 LEU B 182 TYR B 187 ILE B 204 SER B 205 SITE 2 AC4 20 GLY B 232 ASP B 254 LEU B 255 SER B 256 SITE 3 AC4 20 MET B 259 THR B 280 ASP B 281 ALA B 282 SITE 4 AC4 20 ARG B 298 ASP B 299 CYS B 300 HIS B 303 SITE 5 AC4 20 HOH B 611 HOH B 612 HOH B 617 HOH B 633 SITE 1 AC5 11 GLN B 186 TYR B 187 TYR B 195 TYR B 329 SITE 2 AC5 11 TYR B 343 ARG B 347 TYR B 349 LYS B 415 SITE 3 AC5 11 HOH B 607 HOH B 624 HOH B 636 SITE 1 AC6 2 CYS B 110 HOH B 746 CRYST1 57.131 68.011 74.742 107.18 96.30 106.51 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017504 0.005188 0.003949 0.00000 SCALE2 0.000000 0.015336 0.005594 0.00000 SCALE3 0.000000 0.000000 0.014328 0.00000