data_4INX # _entry.id 4INX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4INX RCSB RCSB076988 WWPDB D_1000076988 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4INW _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4INX _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-01-07 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'di Luccio, E.' 1 'Wilson, D.K.' 2 # _citation.id primary _citation.title 'Crystallographic Observation of pH-Induced Conformational Changes in the Amyelois transitella Pheromone-Binding Protein AtraPBP1.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 8 _citation.page_first e53840 _citation.page_last e53840 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23418423 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0053840 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'di Luccio, E.' 1 primary 'Ishida, Y.' 2 primary 'Leal, W.S.' 3 primary 'Wilson, D.K.' 4 # _cell.entry_id 4INX _cell.length_a 57.532 _cell.length_b 57.532 _cell.length_c 93.501 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4INX _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pheromone-binding protein 1' 15867.321 1 ? ? ? ? 2 non-polymer syn '(11Z,13Z)-hexadeca-11,13-dien-1-ol' 238.409 1 ? ? ? ? 3 water nat water 18.015 161 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SPEIMKDLSINFGKALDTCKKELDLPDSINEDFYKFWKEDYEITNRLTGCAIKCLSEKLEMVDADGKLHHGNAREFAMKH GADDAMAKQLVDLIHGCEKSIPPNDDRCMEVLSIAMCFKKEIHNLKWAPNMEVVVGEVLA ; _entity_poly.pdbx_seq_one_letter_code_can ;SPEIMKDLSINFGKALDTCKKELDLPDSINEDFYKFWKEDYEITNRLTGCAIKCLSEKLEMVDADGKLHHGNAREFAMKH GADDAMAKQLVDLIHGCEKSIPPNDDRCMEVLSIAMCFKKEIHNLKWAPNMEVVVGEVLA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PRO n 1 3 GLU n 1 4 ILE n 1 5 MET n 1 6 LYS n 1 7 ASP n 1 8 LEU n 1 9 SER n 1 10 ILE n 1 11 ASN n 1 12 PHE n 1 13 GLY n 1 14 LYS n 1 15 ALA n 1 16 LEU n 1 17 ASP n 1 18 THR n 1 19 CYS n 1 20 LYS n 1 21 LYS n 1 22 GLU n 1 23 LEU n 1 24 ASP n 1 25 LEU n 1 26 PRO n 1 27 ASP n 1 28 SER n 1 29 ILE n 1 30 ASN n 1 31 GLU n 1 32 ASP n 1 33 PHE n 1 34 TYR n 1 35 LYS n 1 36 PHE n 1 37 TRP n 1 38 LYS n 1 39 GLU n 1 40 ASP n 1 41 TYR n 1 42 GLU n 1 43 ILE n 1 44 THR n 1 45 ASN n 1 46 ARG n 1 47 LEU n 1 48 THR n 1 49 GLY n 1 50 CYS n 1 51 ALA n 1 52 ILE n 1 53 LYS n 1 54 CYS n 1 55 LEU n 1 56 SER n 1 57 GLU n 1 58 LYS n 1 59 LEU n 1 60 GLU n 1 61 MET n 1 62 VAL n 1 63 ASP n 1 64 ALA n 1 65 ASP n 1 66 GLY n 1 67 LYS n 1 68 LEU n 1 69 HIS n 1 70 HIS n 1 71 GLY n 1 72 ASN n 1 73 ALA n 1 74 ARG n 1 75 GLU n 1 76 PHE n 1 77 ALA n 1 78 MET n 1 79 LYS n 1 80 HIS n 1 81 GLY n 1 82 ALA n 1 83 ASP n 1 84 ASP n 1 85 ALA n 1 86 MET n 1 87 ALA n 1 88 LYS n 1 89 GLN n 1 90 LEU n 1 91 VAL n 1 92 ASP n 1 93 LEU n 1 94 ILE n 1 95 HIS n 1 96 GLY n 1 97 CYS n 1 98 GLU n 1 99 LYS n 1 100 SER n 1 101 ILE n 1 102 PRO n 1 103 PRO n 1 104 ASN n 1 105 ASP n 1 106 ASP n 1 107 ARG n 1 108 CYS n 1 109 MET n 1 110 GLU n 1 111 VAL n 1 112 LEU n 1 113 SER n 1 114 ILE n 1 115 ALA n 1 116 MET n 1 117 CYS n 1 118 PHE n 1 119 LYS n 1 120 LYS n 1 121 GLU n 1 122 ILE n 1 123 HIS n 1 124 ASN n 1 125 LEU n 1 126 LYS n 1 127 TRP n 1 128 ALA n 1 129 PRO n 1 130 ASN n 1 131 MET n 1 132 GLU n 1 133 VAL n 1 134 VAL n 1 135 VAL n 1 136 GLY n 1 137 GLU n 1 138 VAL n 1 139 LEU n 1 140 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Amyelois transitella' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 680683 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D0E9M1_9NEOP _struct_ref.pdbx_db_accession D0E9M1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SPEIMKDLSINFGKALDTCKKELDLPDSINEDFYKFWKEDYEITNRLTGCAIKCLSEKLEMVDADGKLHHGNAREFAMKH GADDAMAKQLVDLIHGCEKSIPPNDDRCMEVLSIAMCFKKEIHNLKWAPNMEVVVGEVLA ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4INX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 140 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D0E9M1 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 140 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1EX non-polymer . '(11Z,13Z)-hexadeca-11,13-dien-1-ol' ? 'C16 H30 O' 238.409 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4INX _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pdbx_details ;Purified AtraPBP1 was crystallized at room temperature by the hanging drop vapor diffusion method. Drops composed of 1ul protein solution (30 mg/ml) and 1ul of the precipitant solution were suspended over a reservoir containing the precipitant solution (1.6 M sodium citrate pH 6.5). Crystals used in data collection were transferred into Paratone-N oil and flash-cooled in a stream of liquid nitrogen at 110 K, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2006-04-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 1.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 # _reflns.entry_id 4INX _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 50.000 _reflns.number_obs 14800 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_netI_over_sigmaI 16.300 _reflns.pdbx_chi_squared 1.276 _reflns.pdbx_redundancy 2.800 _reflns.percent_possible_obs 98.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 28.4 _reflns.number_all 15052 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.850 1.920 ? ? ? 0.113 ? ? 1.151 2.700 ? 1371 91.800 1 1 1.920 1.990 ? ? ? 0.085 ? ? 1.141 2.800 ? 1474 98.300 2 1 1.990 2.080 ? ? ? 0.071 ? ? 1.266 2.800 ? 1468 98.900 3 1 2.080 2.190 ? ? ? 0.054 ? ? 1.151 2.700 ? 1490 99.300 4 1 2.190 2.330 ? ? ? 0.053 ? ? 1.340 2.800 ? 1485 99.300 5 1 2.330 2.510 ? ? ? 0.047 ? ? 1.381 2.800 ? 1507 99.300 6 1 2.510 2.760 ? ? ? 0.042 ? ? 1.343 2.800 ? 1486 99.400 7 1 2.760 3.160 ? ? ? 0.038 ? ? 1.351 2.800 ? 1498 99.700 8 1 3.160 3.990 ? ? ? 0.032 ? ? 1.492 2.800 ? 1511 99.500 9 1 3.990 50.000 ? ? ? 0.026 ? ? 1.121 2.800 ? 1510 97.700 10 1 # _refine.entry_id 4INX _refine.ls_d_res_high 1.8530 _refine.ls_d_res_low 34.1000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.9800 _refine.ls_number_reflns_obs 14628 _refine.ls_number_reflns_all 14023 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all 0.168 _refine.ls_R_factor_obs 0.1701 _refine.ls_R_factor_R_work 0.168 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2138 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.1000 _refine.ls_number_reflns_R_free 605 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 13.0968 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.1700 _refine.aniso_B[2][2] 0.1700 _refine.aniso_B[3][3] -0.2600 _refine.aniso_B[1][2] 0.0900 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9460 _refine.correlation_coeff_Fo_to_Fc_free 0.9270 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1210 _refine.pdbx_overall_ESU_R_Free 0.1220 _refine.overall_SU_ML 0.0760 _refine.overall_SU_B 2.4270 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 44.700 _refine.B_iso_min 2.820 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.010 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1103 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 1281 _refine_hist.d_res_high 1.8530 _refine_hist.d_res_low 34.1000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1148 0.022 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1540 1.872 1.977 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 141 5.525 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 52 39.168 26.154 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 219 15.063 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 3 26.895 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 166 0.409 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 842 0.018 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 700 1.301 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1125 2.259 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 448 4.154 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 414 6.378 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.8530 _refine_ls_shell.d_res_low 1.9010 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.5700 _refine_ls_shell.number_reflns_R_work 1001 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1570 _refine_ls_shell.R_factor_R_free 0.2160 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1044 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4INX _struct.title 'Structure of Pheromone-binding protein 1 in complex with (Z,Z)-11,13- hexadecadienol' _struct.pdbx_descriptor 'Pheromone-binding protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4INX _struct_keywords.text 'pheromone-binding protein, Amyelois transitella, pheromone, navel orangeworm moth, AtraPBP1, pH-dependent binding' _struct_keywords.pdbx_keywords 'pheromone-binding protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? LYS A 14 ? SER A 1 LYS A 14 1 ? 14 HELX_P HELX_P2 2 ALA A 15 ? ASP A 24 ? ALA A 15 ASP A 24 1 ? 10 HELX_P HELX_P3 3 PRO A 26 ? SER A 28 ? PRO A 26 SER A 28 5 ? 3 HELX_P HELX_P4 4 ILE A 29 ? LYS A 35 ? ILE A 29 LYS A 35 1 ? 7 HELX_P HELX_P5 5 ASN A 45 ? LEU A 59 ? ASN A 45 LEU A 59 1 ? 15 HELX_P HELX_P6 6 HIS A 69 ? HIS A 80 ? HIS A 69 HIS A 80 1 ? 12 HELX_P HELX_P7 7 ASP A 83 ? ILE A 101 ? ASP A 83 ILE A 101 1 ? 19 HELX_P HELX_P8 8 ASP A 106 ? LEU A 125 ? ASP A 106 LEU A 125 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 54 SG ? ? A CYS 19 A CYS 54 1_555 ? ? ? ? ? ? ? 2.156 ? disulf2 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 108 SG ? ? A CYS 50 A CYS 108 1_555 ? ? ? ? ? ? ? 2.072 ? disulf3 disulf ? ? A CYS 97 SG ? ? ? 1_555 A CYS 117 SG ? ? A CYS 97 A CYS 117 1_555 ? ? ? ? ? ? ? 2.151 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE 1EX A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 56 ? SER A 56 . ? 1_555 ? 2 AC1 7 MET A 61 ? MET A 61 . ? 1_555 ? 3 AC1 7 VAL A 62 ? VAL A 62 . ? 1_555 ? 4 AC1 7 LEU A 68 ? LEU A 68 . ? 1_555 ? 5 AC1 7 ILE A 114 ? ILE A 114 . ? 1_555 ? 6 AC1 7 HOH C . ? HOH A 365 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 444 . ? 1_555 ? # _atom_sites.entry_id 4INX _atom_sites.fract_transf_matrix[1][1] 0.017382 _atom_sites.fract_transf_matrix[1][2] 0.010035 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020071 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010695 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 MET 5 5 5 MET MET A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 CYS 108 108 108 CYS CYS A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 MET 116 116 116 MET MET A . n A 1 117 CYS 117 117 117 CYS CYS A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 HIS 123 123 123 HIS HIS A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 TRP 127 127 127 TRP TRP A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 MET 131 131 131 MET MET A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 ALA 140 140 140 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.850 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 14800 _diffrn_reflns.pdbx_Rmerge_I_obs 0.040 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.28 _diffrn_reflns.av_sigmaI_over_netI 28.42 _diffrn_reflns.pdbx_redundancy 2.80 _diffrn_reflns.pdbx_percent_possible_obs 98.30 _diffrn_reflns.number 41040 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.99 50.00 ? ? 0.026 ? 1.121 2.80 97.70 1 3.16 3.99 ? ? 0.032 ? 1.492 2.80 99.50 1 2.76 3.16 ? ? 0.038 ? 1.351 2.80 99.70 1 2.51 2.76 ? ? 0.042 ? 1.343 2.80 99.40 1 2.33 2.51 ? ? 0.047 ? 1.381 2.80 99.30 1 2.19 2.33 ? ? 0.053 ? 1.340 2.80 99.30 1 2.08 2.19 ? ? 0.054 ? 1.151 2.70 99.30 1 1.99 2.08 ? ? 0.071 ? 1.266 2.80 98.90 1 1.92 1.99 ? ? 0.085 ? 1.141 2.80 98.30 1 1.85 1.92 ? ? 0.113 ? 1.151 2.70 91.80 # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 337 ? ? O A HOH 456 ? ? 1.90 2 1 O A ILE 101 ? ? O A HOH 440 ? ? 2.03 3 1 OD2 A ASP 105 ? ? O A HOH 352 ? ? 2.09 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NZ _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 LYS _pdbx_validate_symm_contact.auth_seq_id_1 67 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 457 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_665 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 105 ? ? CG A ASP 105 ? ? OD2 A ASP 105 ? ? 109.31 118.30 -8.99 0.90 N 2 1 CD A ARG 107 ? ? NE A ARG 107 ? ? CZ A ARG 107 ? ? 134.94 123.60 11.34 1.40 N 3 1 NE A ARG 107 ? ? CZ A ARG 107 ? ? NH1 A ARG 107 ? ? 126.74 120.30 6.44 0.50 N 4 1 NE A ARG 107 ? ? CZ A ARG 107 ? ? NH2 A ARG 107 ? ? 113.56 120.30 -6.74 0.50 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 107 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.072 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(11Z,13Z)-hexadeca-11,13-dien-1-ol' 1EX 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1EX 1 201 1 1EX DRG A . C 3 HOH 1 301 201 HOH HOH A . C 3 HOH 2 302 202 HOH HOH A . C 3 HOH 3 303 203 HOH HOH A . C 3 HOH 4 304 204 HOH HOH A . C 3 HOH 5 305 206 HOH HOH A . C 3 HOH 6 306 207 HOH HOH A . C 3 HOH 7 307 208 HOH HOH A . C 3 HOH 8 308 209 HOH HOH A . C 3 HOH 9 309 210 HOH HOH A . C 3 HOH 10 310 211 HOH HOH A . C 3 HOH 11 311 212 HOH HOH A . C 3 HOH 12 312 213 HOH HOH A . C 3 HOH 13 313 214 HOH HOH A . C 3 HOH 14 314 215 HOH HOH A . C 3 HOH 15 315 216 HOH HOH A . C 3 HOH 16 316 217 HOH HOH A . C 3 HOH 17 317 218 HOH HOH A . C 3 HOH 18 318 219 HOH HOH A . C 3 HOH 19 319 220 HOH HOH A . C 3 HOH 20 320 221 HOH HOH A . C 3 HOH 21 321 222 HOH HOH A . C 3 HOH 22 322 223 HOH HOH A . C 3 HOH 23 323 224 HOH HOH A . C 3 HOH 24 324 225 HOH HOH A . C 3 HOH 25 325 226 HOH HOH A . C 3 HOH 26 326 227 HOH HOH A . C 3 HOH 27 327 228 HOH HOH A . C 3 HOH 28 328 229 HOH HOH A . C 3 HOH 29 329 230 HOH HOH A . C 3 HOH 30 330 231 HOH HOH A . C 3 HOH 31 331 232 HOH HOH A . C 3 HOH 32 332 233 HOH HOH A . C 3 HOH 33 333 234 HOH HOH A . C 3 HOH 34 334 235 HOH HOH A . C 3 HOH 35 335 236 HOH HOH A . C 3 HOH 36 336 238 HOH HOH A . C 3 HOH 37 337 240 HOH HOH A . C 3 HOH 38 338 241 HOH HOH A . C 3 HOH 39 339 242 HOH HOH A . C 3 HOH 40 340 243 HOH HOH A . C 3 HOH 41 341 244 HOH HOH A . C 3 HOH 42 342 245 HOH HOH A . C 3 HOH 43 343 246 HOH HOH A . C 3 HOH 44 344 247 HOH HOH A . C 3 HOH 45 345 248 HOH HOH A . C 3 HOH 46 346 249 HOH HOH A . C 3 HOH 47 347 250 HOH HOH A . C 3 HOH 48 348 251 HOH HOH A . C 3 HOH 49 349 252 HOH HOH A . C 3 HOH 50 350 253 HOH HOH A . C 3 HOH 51 351 254 HOH HOH A . C 3 HOH 52 352 255 HOH HOH A . C 3 HOH 53 353 256 HOH HOH A . C 3 HOH 54 354 257 HOH HOH A . C 3 HOH 55 355 258 HOH HOH A . C 3 HOH 56 356 259 HOH HOH A . C 3 HOH 57 357 260 HOH HOH A . C 3 HOH 58 358 261 HOH HOH A . C 3 HOH 59 359 262 HOH HOH A . C 3 HOH 60 360 263 HOH HOH A . C 3 HOH 61 361 264 HOH HOH A . C 3 HOH 62 362 265 HOH HOH A . C 3 HOH 63 363 266 HOH HOH A . C 3 HOH 64 364 267 HOH HOH A . C 3 HOH 65 365 268 HOH HOH A . C 3 HOH 66 366 269 HOH HOH A . C 3 HOH 67 367 271 HOH HOH A . C 3 HOH 68 368 272 HOH HOH A . C 3 HOH 69 369 273 HOH HOH A . C 3 HOH 70 370 274 HOH HOH A . C 3 HOH 71 371 275 HOH HOH A . C 3 HOH 72 372 276 HOH HOH A . C 3 HOH 73 373 277 HOH HOH A . C 3 HOH 74 374 278 HOH HOH A . C 3 HOH 75 375 280 HOH HOH A . C 3 HOH 76 376 281 HOH HOH A . C 3 HOH 77 377 282 HOH HOH A . C 3 HOH 78 378 283 HOH HOH A . C 3 HOH 79 379 285 HOH HOH A . C 3 HOH 80 380 286 HOH HOH A . C 3 HOH 81 381 287 HOH HOH A . C 3 HOH 82 382 289 HOH HOH A . C 3 HOH 83 383 290 HOH HOH A . C 3 HOH 84 384 291 HOH HOH A . C 3 HOH 85 385 292 HOH HOH A . C 3 HOH 86 386 293 HOH HOH A . C 3 HOH 87 387 296 HOH HOH A . C 3 HOH 88 388 297 HOH HOH A . C 3 HOH 89 389 298 HOH HOH A . C 3 HOH 90 390 299 HOH HOH A . C 3 HOH 91 391 300 HOH HOH A . C 3 HOH 92 392 302 HOH HOH A . C 3 HOH 93 393 303 HOH HOH A . C 3 HOH 94 394 304 HOH HOH A . C 3 HOH 95 395 305 HOH HOH A . C 3 HOH 96 396 307 HOH HOH A . C 3 HOH 97 397 309 HOH HOH A . C 3 HOH 98 398 310 HOH HOH A . C 3 HOH 99 399 312 HOH HOH A . C 3 HOH 100 400 313 HOH HOH A . C 3 HOH 101 401 314 HOH HOH A . C 3 HOH 102 402 316 HOH HOH A . C 3 HOH 103 403 318 HOH HOH A . C 3 HOH 104 404 319 HOH HOH A . C 3 HOH 105 405 320 HOH HOH A . C 3 HOH 106 406 321 HOH HOH A . C 3 HOH 107 407 322 HOH HOH A . C 3 HOH 108 408 323 HOH HOH A . C 3 HOH 109 409 324 HOH HOH A . C 3 HOH 110 410 325 HOH HOH A . C 3 HOH 111 411 326 HOH HOH A . C 3 HOH 112 412 327 HOH HOH A . C 3 HOH 113 413 328 HOH HOH A . C 3 HOH 114 414 329 HOH HOH A . C 3 HOH 115 415 331 HOH HOH A . C 3 HOH 116 416 335 HOH HOH A . C 3 HOH 117 417 336 HOH HOH A . C 3 HOH 118 418 338 HOH HOH A . C 3 HOH 119 419 341 HOH HOH A . C 3 HOH 120 420 342 HOH HOH A . C 3 HOH 121 421 343 HOH HOH A . C 3 HOH 122 422 344 HOH HOH A . C 3 HOH 123 423 345 HOH HOH A . C 3 HOH 124 424 349 HOH HOH A . C 3 HOH 125 425 1 HOH HOH A . C 3 HOH 126 426 2 HOH HOH A . C 3 HOH 127 427 3 HOH HOH A . C 3 HOH 128 428 4 HOH HOH A . C 3 HOH 129 429 5 HOH HOH A . C 3 HOH 130 430 6 HOH HOH A . C 3 HOH 131 431 7 HOH HOH A . C 3 HOH 132 432 8 HOH HOH A . C 3 HOH 133 433 9 HOH HOH A . C 3 HOH 134 434 10 HOH HOH A . C 3 HOH 135 435 11 HOH HOH A . C 3 HOH 136 436 12 HOH HOH A . C 3 HOH 137 437 13 HOH HOH A . C 3 HOH 138 438 14 HOH HOH A . C 3 HOH 139 439 15 HOH HOH A . C 3 HOH 140 440 16 HOH HOH A . C 3 HOH 141 441 17 HOH HOH A . C 3 HOH 142 442 18 HOH HOH A . C 3 HOH 143 443 19 HOH HOH A . C 3 HOH 144 444 20 HOH HOH A . C 3 HOH 145 445 21 HOH HOH A . C 3 HOH 146 446 22 HOH HOH A . C 3 HOH 147 447 23 HOH HOH A . C 3 HOH 148 448 24 HOH HOH A . C 3 HOH 149 449 25 HOH HOH A . C 3 HOH 150 450 26 HOH HOH A . C 3 HOH 151 451 27 HOH HOH A . C 3 HOH 152 452 28 HOH HOH A . C 3 HOH 153 453 29 HOH HOH A . C 3 HOH 154 454 30 HOH HOH A . C 3 HOH 155 455 31 HOH HOH A . C 3 HOH 156 456 33 HOH HOH A . C 3 HOH 157 457 36 HOH HOH A . C 3 HOH 158 458 37 HOH HOH A . C 3 HOH 159 459 38 HOH HOH A . C 3 HOH 160 460 41 HOH HOH A . C 3 HOH 161 461 42 HOH HOH A . #