HEADER OXIDOREDUCTASE 23-JAN-13 4IWH TITLE CRYSTAL STRUCTURE OF A 3-ISOPROPYLMALATE DEHYDROGENASE FROM TITLE 2 BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-IPM-DH, BETA-IPM DEHYDROGENASE, IMDH; COMPND 5 EC: 1.1.1.85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264; SOURCE 5 GENE: BTH_II0674, LEUB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BG1861 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, GLYCERALDEHYDE-3-PHOSPHATE, ACONITASE, KEYWDS 3 GAPDH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4IWH 1 REMARK SEQADV LINK REVDAT 1 13-FEB-13 4IWH 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A 3-ISOPROPYLMALATE DEHYDROGENASE FROM JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 79883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 799 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.056 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5526 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5324 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7531 ; 1.408 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12268 ; 0.807 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 744 ; 5.656 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;35.413 ;24.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 902 ;12.157 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;16.973 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 855 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6395 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1184 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2884 ; 1.023 ; 1.625 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2883 ; 1.020 ; 1.625 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3610 ; 1.551 ; 2.434 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 355 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4926 0.7639 27.7038 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: 0.0530 REMARK 3 T33: 0.0220 T12: -0.0386 REMARK 3 T13: -0.0084 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.5222 L22: 0.0648 REMARK 3 L33: 0.2055 L12: -0.1665 REMARK 3 L13: 0.1671 L23: -0.0251 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: 0.0777 S13: -0.0246 REMARK 3 S21: -0.0260 S22: -0.0053 S23: 0.0105 REMARK 3 S31: -0.0502 S32: 0.0911 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 355 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): -30.0283 0.6510 21.8721 REMARK 3 T TENSOR REMARK 3 T11: 0.0498 T22: 0.0119 REMARK 3 T33: 0.0201 T12: 0.0009 REMARK 3 T13: 0.0146 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.3195 L22: 0.2137 REMARK 3 L33: 0.3435 L12: 0.1896 REMARK 3 L13: 0.0583 L23: -0.0484 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.0124 S13: -0.0233 REMARK 3 S21: 0.0708 S22: -0.0139 S23: 0.0090 REMARK 3 S31: -0.0532 S32: -0.0491 S33: -0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4IWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.283574 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 1A05 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUTHA.00092.A.B1 PS01671 AT 23.6 MG/ML REMARK 280 AGAINST MCSG1 SCREEN CONDITION D3, 0.2 M MGCL2, 0.1 M TRISHCL PH REMARK 280 8.5, 30% PEG 400, CRYSTAL TRACKING ID 240482D3, UNIQUE PUCK ID REMARK 280 QUK9-15, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 661 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 795 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 ASN A 309 CG OD1 ND2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 ARG A 319 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 ARG B 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 LYS B 180 CG CD CE NZ REMARK 470 ASP B 284 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 734 O HOH B 757 2.01 REMARK 500 O HOH A 734 O HOH A 735 2.09 REMARK 500 O HOH A 641 O HOH A 885 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 123 85.53 -151.66 REMARK 500 ASP A 133 -174.34 75.24 REMARK 500 ARG A 181 -121.78 -130.98 REMARK 500 ALA A 231 71.40 -165.75 REMARK 500 ASP A 236 -76.57 -118.43 REMARK 500 ASN A 271 17.14 59.97 REMARK 500 SER B 45 21.77 -151.36 REMARK 500 ASP B 133 -177.30 78.24 REMARK 500 ARG B 181 -117.53 -115.39 REMARK 500 VAL B 193 -39.23 -130.69 REMARK 500 ALA B 231 79.66 -164.53 REMARK 500 ASP B 236 -66.63 -129.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 222 OD2 REMARK 620 2 HOH A 734 O 64.1 REMARK 620 3 ASP B 246 OD1 98.4 160.3 REMARK 620 4 ASP B 250 OD2 77.8 68.6 100.0 REMARK 620 5 HOH B 672 O 162.9 103.2 91.9 87.0 REMARK 620 6 HOH B 757 O 111.9 48.2 146.0 72.9 55.2 REMARK 620 7 HOH B 759 O 102.6 99.8 92.6 167.2 90.6 95.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 246 OD1 REMARK 620 2 ASP A 250 OD2 99.5 REMARK 620 3 HOH A 660 O 90.5 86.2 REMARK 620 4 HOH A 733 O 88.9 171.5 93.4 REMARK 620 5 ASP B 222 OD2 102.5 87.3 166.3 91.2 REMARK 620 6 HOH B 559 O 176.1 78.4 92.7 93.1 74.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUTHA.00092.A RELATED DB: TARGETTRACK DBREF 4IWH A 1 355 UNP Q2T7H6 LEU3_BURTA 1 355 DBREF 4IWH B 1 355 UNP Q2T7H6 LEU3_BURTA 1 355 SEQADV 4IWH MET A -7 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH ALA A -6 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS A -5 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS A -4 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS A -3 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS A -2 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS A -1 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS A 0 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH MET B -7 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH ALA B -6 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS B -5 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS B -4 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS B -3 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS B -2 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS B -1 UNP Q2T7H6 EXPRESSION TAG SEQADV 4IWH HIS B 0 UNP Q2T7H6 EXPRESSION TAG SEQRES 1 A 363 MET ALA HIS HIS HIS HIS HIS HIS MET LYS ILE ALA VAL SEQRES 2 A 363 LEU PRO GLY ASP GLY ILE GLY PRO GLU ILE VAL ASN GLU SEQRES 3 A 363 ALA VAL LYS VAL LEU ASN ALA LEU ASP GLU LYS PHE GLU SEQRES 4 A 363 LEU GLU HIS ALA PRO VAL GLY GLY ALA GLY TYR GLU ALA SEQRES 5 A 363 SER GLY HIS PRO LEU PRO ASP ALA THR LEU ALA LEU ALA SEQRES 6 A 363 LYS GLU ALA ASP ALA ILE LEU PHE GLY ALA VAL GLY ASP SEQRES 7 A 363 TRP LYS TYR ASP SER LEU GLU ARG ALA LEU ARG PRO GLU SEQRES 8 A 363 GLN ALA ILE LEU GLY LEU ARG LYS HIS LEU GLU LEU PHE SEQRES 9 A 363 ALA ASN PHE ARG PRO ALA ILE CYS TYR PRO GLN LEU VAL SEQRES 10 A 363 ASP ALA SER PRO LEU LYS PRO GLU LEU VAL ALA GLY LEU SEQRES 11 A 363 ASP ILE LEU ILE VAL ARG GLU LEU ASN GLY ASP ILE TYR SEQRES 12 A 363 PHE GLY GLN PRO ARG GLY VAL ARG ALA ALA PRO ASP GLY SEQRES 13 A 363 PRO PHE ALA GLY GLU ARG GLU GLY PHE ASP THR MET ARG SEQRES 14 A 363 TYR SER GLU PRO GLU VAL ARG ARG ILE ALA HIS VAL ALA SEQRES 15 A 363 PHE GLN ALA ALA GLN LYS ARG ALA LYS LYS LEU LEU SER SEQRES 16 A 363 VAL ASP LYS SER ASN VAL LEU GLU THR SER GLN PHE TRP SEQRES 17 A 363 ARG ASP VAL MET ILE ASP VAL SER LYS GLU TYR ALA ASP SEQRES 18 A 363 VAL GLU LEU SER HIS MET TYR VAL ASP ASN ALA ALA MET SEQRES 19 A 363 GLN LEU ALA LYS ALA PRO LYS GLN PHE ASP VAL ILE VAL SEQRES 20 A 363 THR GLY ASN MET PHE GLY ASP ILE LEU SER ASP GLU ALA SEQRES 21 A 363 SER MET LEU THR GLY SER ILE GLY MET LEU PRO SER ALA SEQRES 22 A 363 SER LEU ASP LYS ASN ASN LYS GLY LEU TYR GLU PRO SER SEQRES 23 A 363 HIS GLY SER ALA PRO ASP ILE ALA GLY LYS GLY ILE ALA SEQRES 24 A 363 ASN PRO LEU ALA THR ILE LEU SER ALA ALA MET LEU LEU SEQRES 25 A 363 ARG TYR SER LEU ASN ARG ALA GLU GLN ALA ASP ARG ILE SEQRES 26 A 363 GLU ARG ALA VAL LYS THR VAL LEU GLU GLN GLY TYR ARG SEQRES 27 A 363 THR GLY ASP ILE ALA THR PRO GLY CYS ARG GLN VAL GLY SEQRES 28 A 363 THR ALA ALA MET GLY ASP ALA VAL VAL ALA ALA LEU SEQRES 1 B 363 MET ALA HIS HIS HIS HIS HIS HIS MET LYS ILE ALA VAL SEQRES 2 B 363 LEU PRO GLY ASP GLY ILE GLY PRO GLU ILE VAL ASN GLU SEQRES 3 B 363 ALA VAL LYS VAL LEU ASN ALA LEU ASP GLU LYS PHE GLU SEQRES 4 B 363 LEU GLU HIS ALA PRO VAL GLY GLY ALA GLY TYR GLU ALA SEQRES 5 B 363 SER GLY HIS PRO LEU PRO ASP ALA THR LEU ALA LEU ALA SEQRES 6 B 363 LYS GLU ALA ASP ALA ILE LEU PHE GLY ALA VAL GLY ASP SEQRES 7 B 363 TRP LYS TYR ASP SER LEU GLU ARG ALA LEU ARG PRO GLU SEQRES 8 B 363 GLN ALA ILE LEU GLY LEU ARG LYS HIS LEU GLU LEU PHE SEQRES 9 B 363 ALA ASN PHE ARG PRO ALA ILE CYS TYR PRO GLN LEU VAL SEQRES 10 B 363 ASP ALA SER PRO LEU LYS PRO GLU LEU VAL ALA GLY LEU SEQRES 11 B 363 ASP ILE LEU ILE VAL ARG GLU LEU ASN GLY ASP ILE TYR SEQRES 12 B 363 PHE GLY GLN PRO ARG GLY VAL ARG ALA ALA PRO ASP GLY SEQRES 13 B 363 PRO PHE ALA GLY GLU ARG GLU GLY PHE ASP THR MET ARG SEQRES 14 B 363 TYR SER GLU PRO GLU VAL ARG ARG ILE ALA HIS VAL ALA SEQRES 15 B 363 PHE GLN ALA ALA GLN LYS ARG ALA LYS LYS LEU LEU SER SEQRES 16 B 363 VAL ASP LYS SER ASN VAL LEU GLU THR SER GLN PHE TRP SEQRES 17 B 363 ARG ASP VAL MET ILE ASP VAL SER LYS GLU TYR ALA ASP SEQRES 18 B 363 VAL GLU LEU SER HIS MET TYR VAL ASP ASN ALA ALA MET SEQRES 19 B 363 GLN LEU ALA LYS ALA PRO LYS GLN PHE ASP VAL ILE VAL SEQRES 20 B 363 THR GLY ASN MET PHE GLY ASP ILE LEU SER ASP GLU ALA SEQRES 21 B 363 SER MET LEU THR GLY SER ILE GLY MET LEU PRO SER ALA SEQRES 22 B 363 SER LEU ASP LYS ASN ASN LYS GLY LEU TYR GLU PRO SER SEQRES 23 B 363 HIS GLY SER ALA PRO ASP ILE ALA GLY LYS GLY ILE ALA SEQRES 24 B 363 ASN PRO LEU ALA THR ILE LEU SER ALA ALA MET LEU LEU SEQRES 25 B 363 ARG TYR SER LEU ASN ARG ALA GLU GLN ALA ASP ARG ILE SEQRES 26 B 363 GLU ARG ALA VAL LYS THR VAL LEU GLU GLN GLY TYR ARG SEQRES 27 B 363 THR GLY ASP ILE ALA THR PRO GLY CYS ARG GLN VAL GLY SEQRES 28 B 363 THR ALA ALA MET GLY ASP ALA VAL VAL ALA ALA LEU HET MG A 401 1 HET MG B 401 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *799(H2 O) HELIX 1 1 GLY A 10 LEU A 26 1 17 HELIX 2 2 GLY A 38 GLY A 46 1 9 HELIX 3 3 PRO A 50 ALA A 60 1 11 HELIX 4 4 ASP A 70 ASP A 74 5 5 HELIX 5 5 GLU A 77 PRO A 82 5 6 HELIX 6 6 GLU A 83 LEU A 93 1 11 HELIX 7 7 TYR A 105 SER A 112 5 8 HELIX 8 8 LYS A 115 ALA A 120 1 6 HELIX 9 9 GLY A 132 PHE A 136 5 5 HELIX 10 10 GLU A 164 LYS A 180 1 17 HELIX 11 11 LEU A 194 LYS A 209 1 16 HELIX 12 12 VAL A 221 ALA A 231 1 11 HELIX 13 13 PRO A 232 PHE A 235 5 4 HELIX 14 14 GLY A 241 GLY A 257 1 17 HELIX 15 15 SER A 258 MET A 261 5 4 HELIX 16 16 PRO A 293 SER A 307 1 15 HELIX 17 17 ARG A 310 GLN A 327 1 18 HELIX 18 18 THR A 331 ALA A 335 5 5 HELIX 19 19 GLY A 343 LEU A 355 1 13 HELIX 20 20 GLY B 10 ALA B 25 1 16 HELIX 21 21 GLY B 38 GLY B 46 1 9 HELIX 22 22 PRO B 50 ALA B 60 1 11 HELIX 23 23 ASP B 70 ASP B 74 5 5 HELIX 24 24 GLU B 77 PRO B 82 5 6 HELIX 25 25 GLU B 83 LEU B 93 1 11 HELIX 26 26 TYR B 105 SER B 112 5 8 HELIX 27 27 LYS B 115 ALA B 120 1 6 HELIX 28 28 GLU B 164 LYS B 180 1 17 HELIX 29 29 LEU B 194 LYS B 209 1 16 HELIX 30 30 VAL B 221 ALA B 231 1 11 HELIX 31 31 PRO B 232 PHE B 235 5 4 HELIX 32 32 GLY B 241 GLY B 257 1 17 HELIX 33 33 SER B 258 MET B 261 5 4 HELIX 34 34 PRO B 293 SER B 307 1 15 HELIX 35 35 ARG B 310 GLY B 328 1 19 HELIX 36 36 THR B 331 ALA B 335 5 5 HELIX 37 37 GLY B 343 ALA B 354 1 12 SHEET 1 A10 GLU A 31 HIS A 34 0 SHEET 2 A10 LYS A 2 GLY A 8 1 N ILE A 3 O GLU A 31 SHEET 3 A10 ALA A 62 ALA A 67 1 O LEU A 64 N LEU A 6 SHEET 4 A10 GLY A 273 PRO A 277 1 O TYR A 275 N PHE A 65 SHEET 5 A10 PRO A 263 LEU A 267 -1 N SER A 266 O LEU A 274 SHEET 6 A10 ALA A 97 ILE A 103 -1 N ALA A 97 O LEU A 267 SHEET 7 A10 ASP A 123 GLU A 129 -1 O ILE A 126 N ARG A 100 SHEET 8 A10 VAL A 237 THR A 240 1 O ILE A 238 N VAL A 127 SHEET 9 A10 LYS A 184 ASP A 189 1 N LEU A 186 O VAL A 239 SHEET 10 A10 GLU A 215 TYR A 220 1 O GLU A 215 N LEU A 185 SHEET 1 B 4 GLY A 141 ALA A 144 0 SHEET 2 B 4 ARG A 154 SER A 163 -1 O PHE A 157 N GLY A 141 SHEET 3 B 4 ARG B 154 SER B 163 -1 O ASP B 158 N MET A 160 SHEET 4 B 4 GLY B 141 ALA B 144 -1 N GLY B 141 O PHE B 157 SHEET 1 C 2 TYR A 329 ARG A 330 0 SHEET 2 C 2 ARG A 340 GLN A 341 1 O ARG A 340 N ARG A 330 SHEET 1 D10 GLU B 31 HIS B 34 0 SHEET 2 D10 LYS B 2 GLY B 8 1 N VAL B 5 O GLU B 33 SHEET 3 D10 ALA B 62 ALA B 67 1 O LEU B 64 N ALA B 4 SHEET 4 D10 GLY B 273 PRO B 277 1 O TYR B 275 N PHE B 65 SHEET 5 D10 PRO B 263 LEU B 267 -1 N SER B 264 O GLU B 276 SHEET 6 D10 ALA B 97 ILE B 103 -1 N ALA B 97 O LEU B 267 SHEET 7 D10 ASP B 123 GLU B 129 -1 O ILE B 126 N ARG B 100 SHEET 8 D10 VAL B 237 THR B 240 1 O ILE B 238 N VAL B 127 SHEET 9 D10 LYS B 184 ASP B 189 1 N LEU B 186 O VAL B 239 SHEET 10 D10 GLU B 215 TYR B 220 1 O GLU B 215 N LEU B 185 SHEET 1 E 2 TYR B 329 ARG B 330 0 SHEET 2 E 2 ARG B 340 GLN B 341 1 O ARG B 340 N ARG B 330 LINK OD2 ASP A 222 MG MG B 401 1555 1555 2.25 LINK OD1 ASP A 246 MG MG A 401 1555 1555 2.02 LINK OD2 ASP A 250 MG MG A 401 1555 1555 2.19 LINK MG MG A 401 O HOH A 660 1555 1555 2.16 LINK MG MG A 401 O HOH A 733 1555 1555 1.94 LINK MG MG A 401 OD2 ASP B 222 1555 1555 2.08 LINK MG MG A 401 O HOH B 559 1555 1555 2.11 LINK O HOH A 734 MG MG B 401 1555 1555 1.86 LINK OD1 ASP B 246 MG MG B 401 1555 1555 2.20 LINK OD2 ASP B 250 MG MG B 401 1555 1555 2.26 LINK MG MG B 401 O HOH B 672 1555 1555 2.04 LINK MG MG B 401 O HOH B 757 1555 1555 2.70 LINK MG MG B 401 O HOH B 759 1555 1555 1.87 CISPEP 1 GLN A 138 PRO A 139 0 -3.57 CISPEP 2 GLN B 138 PRO B 139 0 -1.78 SITE 1 AC1 6 ASP A 246 ASP A 250 HOH A 660 HOH A 733 SITE 2 AC1 6 ASP B 222 HOH B 559 SITE 1 AC2 7 ASP A 222 HOH A 734 ASP B 246 ASP B 250 SITE 2 AC2 7 HOH B 672 HOH B 757 HOH B 759 CRYST1 141.600 60.100 103.190 90.00 112.86 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007062 0.000000 0.002977 0.00000 SCALE2 0.000000 0.016639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010517 0.00000