data_4IWY # _entry.id 4IWY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4IWY RCSB RCSB077313 WWPDB D_1000077313 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4IWX _pdbx_database_related.details 'Same protein, but it is native structure.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4IWY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-01-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shi, D.' 1 'Zhao, G.' 2 'Jin, Z.' 3 'Allewell, N.M.' 4 'Tuchman, M.' 5 # _citation.id primary _citation.title 'Structure and function of Escherichia coli RimK, an ATP-grasp fold, l-glutamyl ligase enzyme.' _citation.journal_abbrev Proteins _citation.journal_volume 81 _citation.page_first 1847 _citation.page_last 1854 _citation.year 2013 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23609986 _citation.pdbx_database_id_DOI 10.1002/prot.24311 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhao, G.' 1 primary 'Jin, Z.' 2 primary 'Wang, Y.' 3 primary 'Allewell, N.M.' 4 primary 'Tuchman, M.' 5 primary 'Shi, D.' 6 # _cell.length_a 129.030 _cell.length_b 129.030 _cell.length_c 171.238 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4IWY _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.entry_id 4IWY _symmetry.Int_Tables_number 181 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribosomal protein S6 modification protein' 35072.922 1 ? ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 non-polymer syn 'GLUTAMIC ACID' 147.129 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 6 ? ? ? ? 5 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSSGLVPRGSH(MSE)KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCY(MSE)NINPAASSI HYKGRKLPHFDAVIPRIGTAITFYGTAALRQFE(MSE)LGSYPLNESVAIARARDKLRS(MSE)QLLARQGIDLPVTGIA HSPDDTSDLID(MSE)VGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDE VVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAART(MSE)ALDVAGVDILRANRGPLV(MSE)EVNASPGLE GIEKTTGIDIAGK(MSE)IRWIERHATTEYCLKTGG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDA VIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVV KLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAA SVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MSE n 1 22 LYS n 1 23 ILE n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 SER n 1 28 ARG n 1 29 ASP n 1 30 GLY n 1 31 THR n 1 32 LEU n 1 33 TYR n 1 34 SER n 1 35 CYS n 1 36 LYS n 1 37 ARG n 1 38 LEU n 1 39 ARG n 1 40 GLU n 1 41 ALA n 1 42 ALA n 1 43 ILE n 1 44 GLN n 1 45 ARG n 1 46 GLY n 1 47 HIS n 1 48 LEU n 1 49 VAL n 1 50 GLU n 1 51 ILE n 1 52 LEU n 1 53 ASP n 1 54 PRO n 1 55 LEU n 1 56 SER n 1 57 CYS n 1 58 TYR n 1 59 MSE n 1 60 ASN n 1 61 ILE n 1 62 ASN n 1 63 PRO n 1 64 ALA n 1 65 ALA n 1 66 SER n 1 67 SER n 1 68 ILE n 1 69 HIS n 1 70 TYR n 1 71 LYS n 1 72 GLY n 1 73 ARG n 1 74 LYS n 1 75 LEU n 1 76 PRO n 1 77 HIS n 1 78 PHE n 1 79 ASP n 1 80 ALA n 1 81 VAL n 1 82 ILE n 1 83 PRO n 1 84 ARG n 1 85 ILE n 1 86 GLY n 1 87 THR n 1 88 ALA n 1 89 ILE n 1 90 THR n 1 91 PHE n 1 92 TYR n 1 93 GLY n 1 94 THR n 1 95 ALA n 1 96 ALA n 1 97 LEU n 1 98 ARG n 1 99 GLN n 1 100 PHE n 1 101 GLU n 1 102 MSE n 1 103 LEU n 1 104 GLY n 1 105 SER n 1 106 TYR n 1 107 PRO n 1 108 LEU n 1 109 ASN n 1 110 GLU n 1 111 SER n 1 112 VAL n 1 113 ALA n 1 114 ILE n 1 115 ALA n 1 116 ARG n 1 117 ALA n 1 118 ARG n 1 119 ASP n 1 120 LYS n 1 121 LEU n 1 122 ARG n 1 123 SER n 1 124 MSE n 1 125 GLN n 1 126 LEU n 1 127 LEU n 1 128 ALA n 1 129 ARG n 1 130 GLN n 1 131 GLY n 1 132 ILE n 1 133 ASP n 1 134 LEU n 1 135 PRO n 1 136 VAL n 1 137 THR n 1 138 GLY n 1 139 ILE n 1 140 ALA n 1 141 HIS n 1 142 SER n 1 143 PRO n 1 144 ASP n 1 145 ASP n 1 146 THR n 1 147 SER n 1 148 ASP n 1 149 LEU n 1 150 ILE n 1 151 ASP n 1 152 MSE n 1 153 VAL n 1 154 GLY n 1 155 GLY n 1 156 ALA n 1 157 PRO n 1 158 LEU n 1 159 VAL n 1 160 VAL n 1 161 LYS n 1 162 LEU n 1 163 VAL n 1 164 GLU n 1 165 GLY n 1 166 THR n 1 167 GLN n 1 168 GLY n 1 169 ILE n 1 170 GLY n 1 171 VAL n 1 172 VAL n 1 173 LEU n 1 174 ALA n 1 175 GLU n 1 176 THR n 1 177 ARG n 1 178 GLN n 1 179 ALA n 1 180 ALA n 1 181 GLU n 1 182 SER n 1 183 VAL n 1 184 ILE n 1 185 ASP n 1 186 ALA n 1 187 PHE n 1 188 ARG n 1 189 GLY n 1 190 LEU n 1 191 ASN n 1 192 ALA n 1 193 HIS n 1 194 ILE n 1 195 LEU n 1 196 VAL n 1 197 GLN n 1 198 GLU n 1 199 TYR n 1 200 ILE n 1 201 LYS n 1 202 GLU n 1 203 ALA n 1 204 GLN n 1 205 GLY n 1 206 CYS n 1 207 ASP n 1 208 ILE n 1 209 ARG n 1 210 CYS n 1 211 LEU n 1 212 VAL n 1 213 VAL n 1 214 GLY n 1 215 ASP n 1 216 GLU n 1 217 VAL n 1 218 VAL n 1 219 ALA n 1 220 ALA n 1 221 ILE n 1 222 GLU n 1 223 ARG n 1 224 ARG n 1 225 ALA n 1 226 LYS n 1 227 GLU n 1 228 GLY n 1 229 ASP n 1 230 PHE n 1 231 ARG n 1 232 SER n 1 233 ASN n 1 234 LEU n 1 235 HIS n 1 236 ARG n 1 237 GLY n 1 238 GLY n 1 239 ALA n 1 240 ALA n 1 241 SER n 1 242 VAL n 1 243 ALA n 1 244 SER n 1 245 ILE n 1 246 THR n 1 247 PRO n 1 248 GLN n 1 249 GLU n 1 250 ARG n 1 251 GLU n 1 252 ILE n 1 253 ALA n 1 254 ILE n 1 255 LYS n 1 256 ALA n 1 257 ALA n 1 258 ARG n 1 259 THR n 1 260 MSE n 1 261 ALA n 1 262 LEU n 1 263 ASP n 1 264 VAL n 1 265 ALA n 1 266 GLY n 1 267 VAL n 1 268 ASP n 1 269 ILE n 1 270 LEU n 1 271 ARG n 1 272 ALA n 1 273 ASN n 1 274 ARG n 1 275 GLY n 1 276 PRO n 1 277 LEU n 1 278 VAL n 1 279 MSE n 1 280 GLU n 1 281 VAL n 1 282 ASN n 1 283 ALA n 1 284 SER n 1 285 PRO n 1 286 GLY n 1 287 LEU n 1 288 GLU n 1 289 GLY n 1 290 ILE n 1 291 GLU n 1 292 LYS n 1 293 THR n 1 294 THR n 1 295 GLY n 1 296 ILE n 1 297 ASP n 1 298 ILE n 1 299 ALA n 1 300 GLY n 1 301 LYS n 1 302 MSE n 1 303 ILE n 1 304 ARG n 1 305 TRP n 1 306 ILE n 1 307 GLU n 1 308 ARG n 1 309 HIS n 1 310 ALA n 1 311 THR n 1 312 THR n 1 313 GLU n 1 314 TYR n 1 315 CYS n 1 316 LEU n 1 317 LYS n 1 318 THR n 1 319 GLY n 1 320 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b0852, JW0836, rimK' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RIMK_ECOLI _struct_ref.pdbx_db_accession P0C0U4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFE MLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAE SVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGGAASVASITPQEREIAIKAARTMA LDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYCLKTGG ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4IWY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 320 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0C0U4 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 300 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 300 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4IWY MSE A 1 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -19 1 1 4IWY GLY A 2 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -18 2 1 4IWY SER A 3 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -17 3 1 4IWY SER A 4 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -16 4 1 4IWY HIS A 5 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -15 5 1 4IWY HIS A 6 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -14 6 1 4IWY HIS A 7 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -13 7 1 4IWY HIS A 8 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -12 8 1 4IWY HIS A 9 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -11 9 1 4IWY HIS A 10 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -10 10 1 4IWY SER A 11 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -9 11 1 4IWY SER A 12 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -8 12 1 4IWY GLY A 13 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -7 13 1 4IWY LEU A 14 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -6 14 1 4IWY VAL A 15 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -5 15 1 4IWY PRO A 16 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -4 16 1 4IWY ARG A 17 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -3 17 1 4IWY GLY A 18 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -2 18 1 4IWY SER A 19 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' -1 19 1 4IWY HIS A 20 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' 0 20 1 4IWY MSE A 21 ? UNP P0C0U4 ? ? 'EXPRESSION TAG' 1 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4IWY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 5.87 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 79.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100 mM HEPES, and 1.8 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 291K, pH 7.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2012-07-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97921 1.0 2 0.97934 1.0 3 0.97471 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97921, 0.97934, 0.97471' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM # _reflns.entry_id 4IWY _reflns.d_resolution_high 2.900 _reflns.d_resolution_low 50.000 _reflns.number_obs 18059 _reflns.pdbx_Rmerge_I_obs 0.126 _reflns.pdbx_netI_over_sigmaI 8.200 _reflns.pdbx_chi_squared 1.264 _reflns.pdbx_redundancy 15.600 _reflns.percent_possible_obs 93.400 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 19373 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.900 2.950 ? ? ? 0.803 ? ? 0.854 7.700 ? 495 53.500 1 1 2.950 3.000 ? ? ? 0.728 ? ? 0.898 8.800 ? 631 66.000 2 1 3.000 3.060 ? ? ? 0.617 ? ? 0.893 9.700 ? 730 76.800 3 1 3.060 3.120 ? ? ? 0.688 ? ? 0.899 11.000 ? 788 84.700 4 1 3.120 3.190 ? ? ? 0.637 ? ? 0.953 12.000 ? 863 91.900 5 1 3.190 3.270 ? ? ? 0.555 ? ? 0.914 13.500 ? 907 96.300 6 1 3.270 3.350 ? ? ? 0.465 ? ? 0.958 15.100 ? 949 99.800 7 1 3.350 3.440 ? ? ? 0.377 ? ? 1.036 16.200 ? 953 99.600 8 1 3.440 3.540 ? ? ? 0.333 ? ? 1.046 17.000 ? 934 99.800 9 1 3.540 3.650 ? ? ? 0.272 ? ? 1.108 17.300 ? 955 99.800 10 1 3.650 3.780 ? ? ? 0.208 ? ? 1.152 17.900 ? 956 99.900 11 1 3.780 3.940 ? ? ? 0.169 ? ? 1.232 18.000 ? 953 99.800 12 1 3.940 4.110 ? ? ? 0.132 ? ? 1.327 18.100 ? 956 99.800 13 1 4.110 4.330 ? ? ? 0.105 ? ? 1.452 18.000 ? 964 99.800 14 1 4.330 4.600 ? ? ? 0.094 ? ? 1.419 18.000 ? 976 99.800 15 1 4.600 4.960 ? ? ? 0.088 ? ? 1.482 17.800 ? 971 99.800 16 1 4.960 5.460 ? ? ? 0.091 ? ? 1.457 17.600 ? 980 100.000 17 1 5.460 6.240 ? ? ? 0.105 ? ? 1.627 17.400 ? 991 99.900 18 1 6.240 7.860 ? ? ? 0.080 ? ? 1.682 17.100 ? 1017 100.000 19 1 7.860 50.000 ? ? ? 0.053 ? ? 1.546 15.600 ? 1090 97.800 20 1 # _refine.entry_id 4IWY _refine.ls_d_res_high 2.900 _refine.ls_d_res_low 26.5580 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 91.7200 _refine.ls_number_reflns_obs 18059 _refine.ls_number_reflns_all 35349 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2072 _refine.ls_R_factor_R_work 0.2049 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2527 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1621 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 79.8256 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3400 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7869 _refine.B_iso_max 307.830 _refine.B_iso_min 35.800 _refine.pdbx_overall_phase_error 27.4400 _refine.occupancy_max 1.000 _refine.occupancy_min 0.310 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2229 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 2297 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 26.5580 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2349 0.011 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3186 1.589 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 366 0.099 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 407 0.008 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 886 17.636 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.8990 2.9842 12 50.0000 1413 . 0.3190 0.3459 . 74 . 1487 . . 'X-RAY DIFFRACTION' 2.9842 3.0804 12 70.0000 1931 . 0.3043 0.3269 . 104 . 2035 . . 'X-RAY DIFFRACTION' 3.0804 3.1903 12 86.0000 2385 . 0.3004 0.3199 . 129 . 2514 . . 'X-RAY DIFFRACTION' 3.1903 3.3178 12 97.0000 2730 . 0.2799 0.3375 . 146 . 2876 . . 'X-RAY DIFFRACTION' 3.3178 3.4685 12 100.0000 2775 . 0.2526 0.2930 . 145 . 2920 . . 'X-RAY DIFFRACTION' 3.4685 3.6509 12 100.0000 2794 . 0.2265 0.3117 . 149 . 2943 . . 'X-RAY DIFFRACTION' 3.6509 3.8790 12 100.0000 2785 . 0.2083 0.2655 . 142 . 2927 . . 'X-RAY DIFFRACTION' 3.8790 4.1775 12 100.0000 2788 . 0.1948 0.2474 . 145 . 2933 . . 'X-RAY DIFFRACTION' 4.1775 4.5959 12 100.0000 2803 . 0.1579 0.2014 . 153 . 2956 . . 'X-RAY DIFFRACTION' 4.5959 5.2565 12 100.0000 2787 . 0.1630 0.2093 . 146 . 2933 . . 'X-RAY DIFFRACTION' 5.2565 6.6057 12 100.0000 2809 . 0.2183 0.2699 . 147 . 2956 . . 'X-RAY DIFFRACTION' 6.6057 26.5590 12 100.0000 2801 . 0.1804 0.2125 . 141 . 2942 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4IWY _struct.title 'SeMet-substituted RimK structure' _struct.pdbx_descriptor 'Ribosomal protein S6 modification protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IWY _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'ATP-grasp fold, Ligase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 31 ? GLN A 44 ? THR A 11 GLN A 24 1 ? 14 HELX_P HELX_P2 2 ARG A 45 ? HIS A 47 ? ARG A 25 HIS A 27 5 ? 3 HELX_P HELX_P3 3 ASP A 53 ? LEU A 55 ? ASP A 33 LEU A 35 5 ? 3 HELX_P HELX_P4 4 ILE A 89 ? GLY A 104 ? ILE A 69 GLY A 84 1 ? 16 HELX_P HELX_P5 5 GLU A 110 ? ASP A 119 ? GLU A 90 ASP A 99 1 ? 10 HELX_P HELX_P6 6 ASP A 119 ? GLN A 130 ? ASP A 99 GLN A 110 1 ? 12 HELX_P HELX_P7 7 ASP A 145 ? MSE A 152 ? ASP A 125 MSE A 132 1 ? 8 HELX_P HELX_P8 8 THR A 176 ? GLY A 189 ? THR A 156 GLY A 169 1 ? 14 HELX_P HELX_P9 9 LEU A 190 ? HIS A 193 ? LEU A 170 HIS A 173 5 ? 4 HELX_P HELX_P10 10 THR A 246 ? ALA A 261 ? THR A 226 ALA A 241 1 ? 16 HELX_P HELX_P11 11 LEU A 287 ? GLY A 295 ? LEU A 267 GLY A 275 1 ? 9 HELX_P HELX_P12 12 ASP A 297 ? ALA A 310 ? ASP A 277 ALA A 290 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 20 C ? ? ? 1_555 A MSE 21 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 21 C ? ? ? 1_555 A LYS 22 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A TYR 58 C ? ? ? 1_555 A MSE 59 N ? ? A TYR 38 A MSE 39 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 59 C ? ? ? 1_555 A ASN 60 N ? ? A MSE 39 A ASN 40 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A GLU 101 C ? ? ? 1_555 A MSE 102 N ? ? A GLU 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.340 ? covale6 covale ? ? A MSE 102 C ? ? ? 1_555 A LEU 103 N ? ? A MSE 82 A LEU 83 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A SER 123 C ? ? ? 1_555 A MSE 124 N ? ? A SER 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? A MSE 124 C ? ? ? 1_555 A GLN 125 N ? ? A MSE 104 A GLN 105 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? A ASP 151 C ? ? ? 1_555 A MSE 152 N ? ? A ASP 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 152 C ? ? ? 1_555 A VAL 153 N ? ? A MSE 132 A VAL 133 1_555 ? ? ? ? ? ? ? 1.331 ? covale11 covale ? ? A THR 259 C ? ? ? 1_555 A MSE 260 N ? ? A THR 239 A MSE 240 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A MSE 260 C ? ? ? 1_555 A ALA 261 N ? ? A MSE 240 A ALA 241 1_555 ? ? ? ? ? ? ? 1.331 ? covale13 covale ? ? A VAL 278 C ? ? ? 1_555 A MSE 279 N ? ? A VAL 258 A MSE 259 1_555 ? ? ? ? ? ? ? 1.323 ? covale14 covale ? ? A MSE 279 C ? ? ? 1_555 A GLU 280 N ? ? A MSE 259 A GLU 260 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? A LYS 301 C ? ? ? 1_555 A MSE 302 N ? ? A LYS 281 A MSE 282 1_555 ? ? ? ? ? ? ? 1.333 ? covale16 covale ? ? A MSE 302 C ? ? ? 1_555 A ILE 303 N ? ? A MSE 282 A ILE 283 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 48 ? LEU A 52 ? LEU A 28 LEU A 32 A 2 LYS A 22 ? LEU A 26 ? LYS A 2 LEU A 6 A 3 ALA A 80 ? PRO A 83 ? ALA A 60 PRO A 63 A 4 TYR A 106 ? PRO A 107 ? TYR A 86 PRO A 87 B 1 CYS A 57 ? MSE A 59 ? CYS A 37 MSE A 39 B 2 ILE A 68 ? TYR A 70 ? ILE A 48 TYR A 50 B 3 ARG A 73 ? LYS A 74 ? ARG A 53 LYS A 54 C 1 THR A 137 ? ALA A 140 ? THR A 117 ALA A 120 C 2 LEU A 195 ? TYR A 199 ? LEU A 175 TYR A 179 C 3 LEU A 158 ? LEU A 162 ? LEU A 138 LEU A 142 C 4 GLY A 170 ? ALA A 174 ? GLY A 150 ALA A 154 D 1 ALA A 239 ? VAL A 242 ? ALA A 219 VAL A 222 D 2 GLU A 216 ? ARG A 224 ? GLU A 196 ARG A 204 D 3 CYS A 206 ? VAL A 213 ? CYS A 186 VAL A 193 D 4 VAL A 264 ? ALA A 272 ? VAL A 244 ALA A 252 D 5 GLY A 275 ? ASN A 282 ? GLY A 255 ASN A 262 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 48 ? O LEU A 28 N ILE A 23 ? N ILE A 3 A 2 3 N ALA A 24 ? N ALA A 4 O ILE A 82 ? O ILE A 62 A 3 4 N VAL A 81 ? N VAL A 61 O TYR A 106 ? O TYR A 86 B 1 2 N TYR A 58 ? N TYR A 38 O HIS A 69 ? O HIS A 49 B 2 3 N TYR A 70 ? N TYR A 50 O ARG A 73 ? O ARG A 53 C 1 2 N GLY A 138 ? N GLY A 118 O GLN A 197 ? O GLN A 177 C 2 3 O GLU A 198 ? O GLU A 178 N VAL A 159 ? N VAL A 139 C 3 4 N LEU A 158 ? N LEU A 138 O ALA A 174 ? O ALA A 154 D 1 2 O SER A 241 ? O SER A 221 N GLU A 222 ? N GLU A 202 D 2 3 O ILE A 221 ? O ILE A 201 N ARG A 209 ? N ARG A 189 D 3 4 N ILE A 208 ? N ILE A 188 O ILE A 269 ? O ILE A 249 D 4 5 N LEU A 270 ? N LEU A 250 O LEU A 277 ? O LEU A 257 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE ADP A 401' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GLU A 402' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 403' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 404' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 405' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 406' AC7 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 407' AC8 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 408' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 LYS A 161 ? LYS A 141 . ? 1_555 ? 2 AC1 15 GLU A 198 ? GLU A 178 . ? 1_555 ? 3 AC1 15 TYR A 199 ? TYR A 179 . ? 1_555 ? 4 AC1 15 ILE A 200 ? ILE A 180 . ? 1_555 ? 5 AC1 15 LYS A 201 ? LYS A 181 . ? 1_555 ? 6 AC1 15 ASP A 207 ? ASP A 187 . ? 1_555 ? 7 AC1 15 ARG A 223 ? ARG A 203 . ? 1_555 ? 8 AC1 15 PHE A 230 ? PHE A 210 . ? 1_555 ? 9 AC1 15 ARG A 231 ? ARG A 211 . ? 1_555 ? 10 AC1 15 SER A 232 ? SER A 212 . ? 1_555 ? 11 AC1 15 ASN A 233 ? ASN A 213 . ? 1_555 ? 12 AC1 15 ASP A 268 ? ASP A 248 . ? 1_555 ? 13 AC1 15 LEU A 270 ? LEU A 250 . ? 1_555 ? 14 AC1 15 MSE A 279 ? MSE A 259 . ? 1_555 ? 15 AC1 15 GLU A 280 ? GLU A 260 . ? 1_555 ? 16 AC2 7 ARG A 98 ? ARG A 78 . ? 12_565 ? 17 AC2 7 VAL A 112 ? VAL A 92 . ? 12_565 ? 18 AC2 7 ARG A 116 ? ARG A 96 . ? 1_555 ? 19 AC2 7 ARG A 122 ? ARG A 102 . ? 1_555 ? 20 AC2 7 GLN A 125 ? GLN A 105 . ? 1_555 ? 21 AC2 7 LEU A 126 ? LEU A 106 . ? 1_555 ? 22 AC2 7 ARG A 129 ? ARG A 109 . ? 1_555 ? 23 AC3 6 ARG A 209 ? ARG A 189 . ? 1_555 ? 24 AC3 6 LEU A 234 ? LEU A 214 . ? 1_555 ? 25 AC3 6 ASN A 282 ? ASN A 262 . ? 1_555 ? 26 AC3 6 PRO A 285 ? PRO A 265 . ? 1_555 ? 27 AC3 6 GLY A 286 ? GLY A 266 . ? 1_555 ? 28 AC3 6 SO4 F . ? SO4 A 405 . ? 1_555 ? 29 AC4 6 THR A 87 ? THR A 67 . ? 1_555 ? 30 AC4 6 ARG A 118 ? ARG A 98 . ? 1_555 ? 31 AC4 6 LYS A 120 ? LYS A 100 . ? 1_555 ? 32 AC4 6 ASN A 282 ? ASN A 262 . ? 1_555 ? 33 AC4 6 ALA A 283 ? ALA A 263 . ? 1_555 ? 34 AC4 6 SER A 284 ? SER A 264 . ? 1_555 ? 35 AC5 4 TYR A 33 ? TYR A 13 . ? 1_555 ? 36 AC5 4 LEU A 234 ? LEU A 214 . ? 1_555 ? 37 AC5 4 GLY A 289 ? GLY A 269 . ? 1_555 ? 38 AC5 4 SO4 D . ? SO4 A 403 . ? 1_555 ? 39 AC6 2 LYS A 71 ? LYS A 51 . ? 1_555 ? 40 AC6 2 ARG A 73 ? ARG A 53 . ? 1_555 ? 41 AC7 3 SER A 66 ? SER A 46 . ? 1_555 ? 42 AC7 3 SER A 67 ? SER A 47 . ? 1_555 ? 43 AC7 3 LYS A 74 ? LYS A 54 . ? 1_555 ? 44 AC8 4 ARG A 304 ? ARG A 284 . ? 1_555 ? 45 AC8 4 ARG A 304 ? ARG A 284 . ? 11_556 ? 46 AC8 4 ARG A 308 ? ARG A 288 . ? 11_556 ? 47 AC8 4 ARG A 308 ? ARG A 288 . ? 1_555 ? # _atom_sites.entry_id 4IWY _atom_sites.fract_transf_matrix[1][1] 0.007750 _atom_sites.fract_transf_matrix[1][2] 0.004475 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008949 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005840 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 -1 SER SER A . n A 1 20 HIS 20 0 0 HIS HIS A . n A 1 21 MSE 21 1 1 MSE MSE A . n A 1 22 LYS 22 2 2 LYS LYS A . n A 1 23 ILE 23 3 3 ILE ILE A . n A 1 24 ALA 24 4 4 ALA ALA A . n A 1 25 ILE 25 5 5 ILE ILE A . n A 1 26 LEU 26 6 6 LEU LEU A . n A 1 27 SER 27 7 7 SER SER A . n A 1 28 ARG 28 8 8 ARG ARG A . n A 1 29 ASP 29 9 9 ASP ASP A . n A 1 30 GLY 30 10 10 GLY GLY A . n A 1 31 THR 31 11 11 THR THR A . n A 1 32 LEU 32 12 12 LEU LEU A . n A 1 33 TYR 33 13 13 TYR TYR A . n A 1 34 SER 34 14 14 SER SER A . n A 1 35 CYS 35 15 15 CYS CYS A . n A 1 36 LYS 36 16 16 LYS LYS A . n A 1 37 ARG 37 17 17 ARG ARG A . n A 1 38 LEU 38 18 18 LEU LEU A . n A 1 39 ARG 39 19 19 ARG ARG A . n A 1 40 GLU 40 20 20 GLU GLU A . n A 1 41 ALA 41 21 21 ALA ALA A . n A 1 42 ALA 42 22 22 ALA ALA A . n A 1 43 ILE 43 23 23 ILE ILE A . n A 1 44 GLN 44 24 24 GLN GLN A . n A 1 45 ARG 45 25 25 ARG ARG A . n A 1 46 GLY 46 26 26 GLY GLY A . n A 1 47 HIS 47 27 27 HIS HIS A . n A 1 48 LEU 48 28 28 LEU LEU A . n A 1 49 VAL 49 29 29 VAL VAL A . n A 1 50 GLU 50 30 30 GLU GLU A . n A 1 51 ILE 51 31 31 ILE ILE A . n A 1 52 LEU 52 32 32 LEU LEU A . n A 1 53 ASP 53 33 33 ASP ASP A . n A 1 54 PRO 54 34 34 PRO PRO A . n A 1 55 LEU 55 35 35 LEU LEU A . n A 1 56 SER 56 36 36 SER SER A . n A 1 57 CYS 57 37 37 CYS CYS A . n A 1 58 TYR 58 38 38 TYR TYR A . n A 1 59 MSE 59 39 39 MSE MSE A . n A 1 60 ASN 60 40 40 ASN ASN A . n A 1 61 ILE 61 41 41 ILE ILE A . n A 1 62 ASN 62 42 42 ASN ASN A . n A 1 63 PRO 63 43 43 PRO PRO A . n A 1 64 ALA 64 44 44 ALA ALA A . n A 1 65 ALA 65 45 45 ALA ALA A . n A 1 66 SER 66 46 46 SER SER A . n A 1 67 SER 67 47 47 SER SER A . n A 1 68 ILE 68 48 48 ILE ILE A . n A 1 69 HIS 69 49 49 HIS HIS A . n A 1 70 TYR 70 50 50 TYR TYR A . n A 1 71 LYS 71 51 51 LYS LYS A . n A 1 72 GLY 72 52 52 GLY GLY A . n A 1 73 ARG 73 53 53 ARG ARG A . n A 1 74 LYS 74 54 54 LYS LYS A . n A 1 75 LEU 75 55 55 LEU LEU A . n A 1 76 PRO 76 56 56 PRO PRO A . n A 1 77 HIS 77 57 57 HIS HIS A . n A 1 78 PHE 78 58 58 PHE PHE A . n A 1 79 ASP 79 59 59 ASP ASP A . n A 1 80 ALA 80 60 60 ALA ALA A . n A 1 81 VAL 81 61 61 VAL VAL A . n A 1 82 ILE 82 62 62 ILE ILE A . n A 1 83 PRO 83 63 63 PRO PRO A . n A 1 84 ARG 84 64 64 ARG ARG A . n A 1 85 ILE 85 65 65 ILE ILE A . n A 1 86 GLY 86 66 66 GLY GLY A . n A 1 87 THR 87 67 67 THR THR A . n A 1 88 ALA 88 68 68 ALA ALA A . n A 1 89 ILE 89 69 69 ILE ILE A . n A 1 90 THR 90 70 70 THR THR A . n A 1 91 PHE 91 71 71 PHE PHE A . n A 1 92 TYR 92 72 72 TYR TYR A . n A 1 93 GLY 93 73 73 GLY GLY A . n A 1 94 THR 94 74 74 THR THR A . n A 1 95 ALA 95 75 75 ALA ALA A . n A 1 96 ALA 96 76 76 ALA ALA A . n A 1 97 LEU 97 77 77 LEU LEU A . n A 1 98 ARG 98 78 78 ARG ARG A . n A 1 99 GLN 99 79 79 GLN GLN A . n A 1 100 PHE 100 80 80 PHE PHE A . n A 1 101 GLU 101 81 81 GLU GLU A . n A 1 102 MSE 102 82 82 MSE MSE A . n A 1 103 LEU 103 83 83 LEU LEU A . n A 1 104 GLY 104 84 84 GLY GLY A . n A 1 105 SER 105 85 85 SER SER A . n A 1 106 TYR 106 86 86 TYR TYR A . n A 1 107 PRO 107 87 87 PRO PRO A . n A 1 108 LEU 108 88 88 LEU LEU A . n A 1 109 ASN 109 89 89 ASN ASN A . n A 1 110 GLU 110 90 90 GLU GLU A . n A 1 111 SER 111 91 91 SER SER A . n A 1 112 VAL 112 92 92 VAL VAL A . n A 1 113 ALA 113 93 93 ALA ALA A . n A 1 114 ILE 114 94 94 ILE ILE A . n A 1 115 ALA 115 95 95 ALA ALA A . n A 1 116 ARG 116 96 96 ARG ARG A . n A 1 117 ALA 117 97 97 ALA ALA A . n A 1 118 ARG 118 98 98 ARG ARG A . n A 1 119 ASP 119 99 99 ASP ASP A . n A 1 120 LYS 120 100 100 LYS LYS A . n A 1 121 LEU 121 101 101 LEU LEU A . n A 1 122 ARG 122 102 102 ARG ARG A . n A 1 123 SER 123 103 103 SER SER A . n A 1 124 MSE 124 104 104 MSE MSE A . n A 1 125 GLN 125 105 105 GLN GLN A . n A 1 126 LEU 126 106 106 LEU LEU A . n A 1 127 LEU 127 107 107 LEU LEU A . n A 1 128 ALA 128 108 108 ALA ALA A . n A 1 129 ARG 129 109 109 ARG ARG A . n A 1 130 GLN 130 110 110 GLN GLN A . n A 1 131 GLY 131 111 111 GLY GLY A . n A 1 132 ILE 132 112 112 ILE ILE A . n A 1 133 ASP 133 113 113 ASP ASP A . n A 1 134 LEU 134 114 114 LEU LEU A . n A 1 135 PRO 135 115 115 PRO PRO A . n A 1 136 VAL 136 116 116 VAL VAL A . n A 1 137 THR 137 117 117 THR THR A . n A 1 138 GLY 138 118 118 GLY GLY A . n A 1 139 ILE 139 119 119 ILE ILE A . n A 1 140 ALA 140 120 120 ALA ALA A . n A 1 141 HIS 141 121 121 HIS HIS A . n A 1 142 SER 142 122 122 SER SER A . n A 1 143 PRO 143 123 123 PRO PRO A . n A 1 144 ASP 144 124 124 ASP ASP A . n A 1 145 ASP 145 125 125 ASP ASP A . n A 1 146 THR 146 126 126 THR THR A . n A 1 147 SER 147 127 127 SER SER A . n A 1 148 ASP 148 128 128 ASP ASP A . n A 1 149 LEU 149 129 129 LEU LEU A . n A 1 150 ILE 150 130 130 ILE ILE A . n A 1 151 ASP 151 131 131 ASP ASP A . n A 1 152 MSE 152 132 132 MSE MSE A . n A 1 153 VAL 153 133 133 VAL VAL A . n A 1 154 GLY 154 134 134 GLY GLY A . n A 1 155 GLY 155 135 135 GLY GLY A . n A 1 156 ALA 156 136 136 ALA ALA A . n A 1 157 PRO 157 137 137 PRO PRO A . n A 1 158 LEU 158 138 138 LEU LEU A . n A 1 159 VAL 159 139 139 VAL VAL A . n A 1 160 VAL 160 140 140 VAL VAL A . n A 1 161 LYS 161 141 141 LYS LYS A . n A 1 162 LEU 162 142 142 LEU LEU A . n A 1 163 VAL 163 143 143 VAL VAL A . n A 1 164 GLU 164 144 144 GLU GLU A . n A 1 165 GLY 165 145 145 GLY GLY A . n A 1 166 THR 166 146 146 THR THR A . n A 1 167 GLN 167 147 147 GLN GLN A . n A 1 168 GLY 168 148 148 GLY GLY A . n A 1 169 ILE 169 149 149 ILE ILE A . n A 1 170 GLY 170 150 150 GLY GLY A . n A 1 171 VAL 171 151 151 VAL VAL A . n A 1 172 VAL 172 152 152 VAL VAL A . n A 1 173 LEU 173 153 153 LEU LEU A . n A 1 174 ALA 174 154 154 ALA ALA A . n A 1 175 GLU 175 155 155 GLU GLU A . n A 1 176 THR 176 156 156 THR THR A . n A 1 177 ARG 177 157 157 ARG ARG A . n A 1 178 GLN 178 158 158 GLN GLN A . n A 1 179 ALA 179 159 159 ALA ALA A . n A 1 180 ALA 180 160 160 ALA ALA A . n A 1 181 GLU 181 161 161 GLU GLU A . n A 1 182 SER 182 162 162 SER SER A . n A 1 183 VAL 183 163 163 VAL VAL A . n A 1 184 ILE 184 164 164 ILE ILE A . n A 1 185 ASP 185 165 165 ASP ASP A . n A 1 186 ALA 186 166 166 ALA ALA A . n A 1 187 PHE 187 167 167 PHE PHE A . n A 1 188 ARG 188 168 168 ARG ARG A . n A 1 189 GLY 189 169 169 GLY GLY A . n A 1 190 LEU 190 170 170 LEU LEU A . n A 1 191 ASN 191 171 171 ASN ASN A . n A 1 192 ALA 192 172 172 ALA ALA A . n A 1 193 HIS 193 173 173 HIS HIS A . n A 1 194 ILE 194 174 174 ILE ILE A . n A 1 195 LEU 195 175 175 LEU LEU A . n A 1 196 VAL 196 176 176 VAL VAL A . n A 1 197 GLN 197 177 177 GLN GLN A . n A 1 198 GLU 198 178 178 GLU GLU A . n A 1 199 TYR 199 179 179 TYR TYR A . n A 1 200 ILE 200 180 180 ILE ILE A . n A 1 201 LYS 201 181 181 LYS LYS A . n A 1 202 GLU 202 182 182 GLU GLU A . n A 1 203 ALA 203 183 183 ALA ALA A . n A 1 204 GLN 204 184 184 GLN GLN A . n A 1 205 GLY 205 185 185 GLY GLY A . n A 1 206 CYS 206 186 186 CYS CYS A . n A 1 207 ASP 207 187 187 ASP ASP A . n A 1 208 ILE 208 188 188 ILE ILE A . n A 1 209 ARG 209 189 189 ARG ARG A . n A 1 210 CYS 210 190 190 CYS CYS A . n A 1 211 LEU 211 191 191 LEU LEU A . n A 1 212 VAL 212 192 192 VAL VAL A . n A 1 213 VAL 213 193 193 VAL VAL A . n A 1 214 GLY 214 194 194 GLY GLY A . n A 1 215 ASP 215 195 195 ASP ASP A . n A 1 216 GLU 216 196 196 GLU GLU A . n A 1 217 VAL 217 197 197 VAL VAL A . n A 1 218 VAL 218 198 198 VAL VAL A . n A 1 219 ALA 219 199 199 ALA ALA A . n A 1 220 ALA 220 200 200 ALA ALA A . n A 1 221 ILE 221 201 201 ILE ILE A . n A 1 222 GLU 222 202 202 GLU GLU A . n A 1 223 ARG 223 203 203 ARG ARG A . n A 1 224 ARG 224 204 204 ARG ARG A . n A 1 225 ALA 225 205 205 ALA ALA A . n A 1 226 LYS 226 206 206 LYS LYS A . n A 1 227 GLU 227 207 207 GLU GLU A . n A 1 228 GLY 228 208 208 GLY GLY A . n A 1 229 ASP 229 209 209 ASP ASP A . n A 1 230 PHE 230 210 210 PHE PHE A . n A 1 231 ARG 231 211 211 ARG ARG A . n A 1 232 SER 232 212 212 SER SER A . n A 1 233 ASN 233 213 213 ASN ASN A . n A 1 234 LEU 234 214 214 LEU LEU A . n A 1 235 HIS 235 215 215 HIS HIS A . n A 1 236 ARG 236 216 216 ARG ARG A . n A 1 237 GLY 237 217 217 GLY GLY A . n A 1 238 GLY 238 218 218 GLY GLY A . n A 1 239 ALA 239 219 219 ALA ALA A . n A 1 240 ALA 240 220 220 ALA ALA A . n A 1 241 SER 241 221 221 SER SER A . n A 1 242 VAL 242 222 222 VAL VAL A . n A 1 243 ALA 243 223 223 ALA ALA A . n A 1 244 SER 244 224 224 SER SER A . n A 1 245 ILE 245 225 225 ILE ILE A . n A 1 246 THR 246 226 226 THR THR A . n A 1 247 PRO 247 227 227 PRO PRO A . n A 1 248 GLN 248 228 228 GLN GLN A . n A 1 249 GLU 249 229 229 GLU GLU A . n A 1 250 ARG 250 230 230 ARG ARG A . n A 1 251 GLU 251 231 231 GLU GLU A . n A 1 252 ILE 252 232 232 ILE ILE A . n A 1 253 ALA 253 233 233 ALA ALA A . n A 1 254 ILE 254 234 234 ILE ILE A . n A 1 255 LYS 255 235 235 LYS LYS A . n A 1 256 ALA 256 236 236 ALA ALA A . n A 1 257 ALA 257 237 237 ALA ALA A . n A 1 258 ARG 258 238 238 ARG ARG A . n A 1 259 THR 259 239 239 THR THR A . n A 1 260 MSE 260 240 240 MSE MSE A . n A 1 261 ALA 261 241 241 ALA ALA A . n A 1 262 LEU 262 242 242 LEU LEU A . n A 1 263 ASP 263 243 243 ASP ASP A . n A 1 264 VAL 264 244 244 VAL VAL A . n A 1 265 ALA 265 245 245 ALA ALA A . n A 1 266 GLY 266 246 246 GLY GLY A . n A 1 267 VAL 267 247 247 VAL VAL A . n A 1 268 ASP 268 248 248 ASP ASP A . n A 1 269 ILE 269 249 249 ILE ILE A . n A 1 270 LEU 270 250 250 LEU LEU A . n A 1 271 ARG 271 251 251 ARG ARG A . n A 1 272 ALA 272 252 252 ALA ALA A . n A 1 273 ASN 273 253 253 ASN ASN A . n A 1 274 ARG 274 254 254 ARG ARG A . n A 1 275 GLY 275 255 255 GLY GLY A . n A 1 276 PRO 276 256 256 PRO PRO A . n A 1 277 LEU 277 257 257 LEU LEU A . n A 1 278 VAL 278 258 258 VAL VAL A . n A 1 279 MSE 279 259 259 MSE MSE A . n A 1 280 GLU 280 260 260 GLU GLU A . n A 1 281 VAL 281 261 261 VAL VAL A . n A 1 282 ASN 282 262 262 ASN ASN A . n A 1 283 ALA 283 263 263 ALA ALA A . n A 1 284 SER 284 264 264 SER SER A . n A 1 285 PRO 285 265 265 PRO PRO A . n A 1 286 GLY 286 266 266 GLY GLY A . n A 1 287 LEU 287 267 267 LEU LEU A . n A 1 288 GLU 288 268 268 GLU GLU A . n A 1 289 GLY 289 269 269 GLY GLY A . n A 1 290 ILE 290 270 270 ILE ILE A . n A 1 291 GLU 291 271 271 GLU GLU A . n A 1 292 LYS 292 272 272 LYS LYS A . n A 1 293 THR 293 273 273 THR THR A . n A 1 294 THR 294 274 274 THR THR A . n A 1 295 GLY 295 275 275 GLY GLY A . n A 1 296 ILE 296 276 276 ILE ILE A . n A 1 297 ASP 297 277 277 ASP ASP A . n A 1 298 ILE 298 278 278 ILE ILE A . n A 1 299 ALA 299 279 279 ALA ALA A . n A 1 300 GLY 300 280 280 GLY GLY A . n A 1 301 LYS 301 281 281 LYS LYS A . n A 1 302 MSE 302 282 282 MSE MSE A . n A 1 303 ILE 303 283 283 ILE ILE A . n A 1 304 ARG 304 284 284 ARG ARG A . n A 1 305 TRP 305 285 285 TRP TRP A . n A 1 306 ILE 306 286 286 ILE ILE A . n A 1 307 GLU 307 287 287 GLU GLU A . n A 1 308 ARG 308 288 288 ARG ARG A . n A 1 309 HIS 309 289 289 HIS HIS A . n A 1 310 ALA 310 290 290 ALA ALA A . n A 1 311 THR 311 291 291 THR THR A . n A 1 312 THR 312 292 292 THR THR A . n A 1 313 GLU 313 293 ? ? ? A . n A 1 314 TYR 314 294 ? ? ? A . n A 1 315 CYS 315 295 ? ? ? A . n A 1 316 LEU 316 296 ? ? ? A . n A 1 317 LYS 317 297 ? ? ? A . n A 1 318 THR 318 298 ? ? ? A . n A 1 319 GLY 319 299 ? ? ? A . n A 1 320 GLY 320 300 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 401 320 ADP ADP A . C 3 GLU 1 402 321 GLU GLU A . D 4 SO4 1 403 1 SO4 SO4 A . E 4 SO4 1 404 2 SO4 SO4 A . F 4 SO4 1 405 3 SO4 SO4 A . G 4 SO4 1 406 4 SO4 SO4 A . H 4 SO4 1 407 5 SO4 SO4 A . I 4 SO4 1 408 6 SO4 SO4 A . J 5 HOH 1 501 1 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 21 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 59 A MSE 39 ? MET SELENOMETHIONINE 3 A MSE 102 A MSE 82 ? MET SELENOMETHIONINE 4 A MSE 124 A MSE 104 ? MET SELENOMETHIONINE 5 A MSE 152 A MSE 132 ? MET SELENOMETHIONINE 6 A MSE 260 A MSE 240 ? MET SELENOMETHIONINE 7 A MSE 279 A MSE 259 ? MET SELENOMETHIONINE 8 A MSE 302 A MSE 282 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 19430 ? 1 MORE -405 ? 1 'SSA (A^2)' 42640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 -64.5150000000 0.0000000000 -1.0000000000 0.0000000000 111.7432578503 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 114.1586666667 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+2/3 0.5000000000 0.8660254038 0.0000000000 -64.5150000000 0.8660254038 -0.5000000000 0.0000000000 111.7432578503 0.0000000000 0.0000000000 -1.0000000000 114.1586666667 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id SO4 _pdbx_struct_special_symmetry.auth_seq_id 408 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id SO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-08 2 'Structure model' 1 1 2013-10-09 3 'Structure model' 1 2 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category audit_author # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_audit_author.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -18.6768 74.0092 73.6544 0.3807 0.4514 0.3815 -0.0144 -0.0006 -0.0016 3.5408 3.5171 3.4585 -2.4305 0.6976 -0.2057 -0.0971 0.2260 -0.1263 -0.2920 0.0494 -0.0433 0.0534 -0.1801 0.2034 'X-RAY DIFFRACTION' 2 ? refined -3.5500 55.6888 59.8972 0.6564 0.6113 0.5479 -0.0511 0.0335 0.0149 4.5911 5.4357 4.0750 -1.5220 1.2814 -0.8046 0.1177 -0.0845 0.0333 -0.5821 -0.1639 -0.2824 -0.4703 -0.4310 0.5445 'X-RAY DIFFRACTION' 3 ? refined -14.8888 42.4821 54.7934 0.4544 0.3492 0.5126 0.0054 -0.0519 -0.0369 2.5429 3.9936 5.1567 2.6485 -0.1830 0.0712 0.0957 0.3026 -0.3593 0.2473 -0.1850 0.1364 -0.4378 0.0656 0.1374 'X-RAY DIFFRACTION' 4 ? refined -6.3004 51.2419 75.0353 0.4854 0.7477 0.5790 -0.0233 -0.1008 0.0252 0.8133 2.3361 2.9308 -0.8186 -0.6169 1.0919 0.0673 0.0043 -0.0960 -0.1173 -0.2194 0.1212 0.0079 0.4483 -0.1715 'X-RAY DIFFRACTION' 5 ? refined -6.1839 71.7582 81.8850 0.5491 0.6661 0.6165 0.0129 -0.0828 -0.1375 6.5984 6.5723 5.5082 1.0898 -1.6484 -0.7852 -0.2265 0.5930 -0.3963 0.2183 -0.0310 -0.8698 0.2231 -0.3870 0.3057 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -1 A 99 '(chain A and resid -1:99)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 100 A 115 '(chain A and resid 100:115)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 116 A 180 '(chain A and resid 116:180)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 181 A 276 '(chain A and resid 181:276)' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 277 A 292 '(chain A and resid 277:292)' ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 SHELXS . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 102 ? ? OE2 A GLU 402 ? ? 2.15 2 1 O A GLN 24 ? ? N A GLY 26 ? ? 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 18 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 18 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 18 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.97 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.67 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 0 ? ? 41.99 86.11 2 1 ILE A 23 ? ? -63.82 -74.87 3 1 ARG A 25 ? ? -3.81 39.55 4 1 ASN A 42 ? ? -71.70 -132.10 5 1 PRO A 43 ? ? -23.87 87.56 6 1 ALA A 44 ? ? -13.74 127.80 7 1 ALA A 45 ? ? 74.02 -102.14 8 1 SER A 46 ? ? 65.15 148.71 9 1 HIS A 57 ? ? 77.51 105.55 10 1 ILE A 69 ? ? -142.59 20.61 11 1 ASN A 89 ? ? 70.07 108.62 12 1 ASP A 99 ? ? -68.01 92.16 13 1 HIS A 121 ? ? -137.48 -57.46 14 1 ASP A 124 ? ? 77.49 -20.84 15 1 VAL A 133 ? ? 74.05 -31.95 16 1 VAL A 143 ? ? -133.10 -54.03 17 1 GLU A 144 ? ? 61.68 94.40 18 1 THR A 146 ? ? -156.61 80.67 19 1 GLN A 147 ? ? -153.85 -76.41 20 1 ILE A 149 ? ? -147.49 20.10 21 1 ASN A 171 ? ? -53.63 2.61 22 1 HIS A 173 ? ? 58.17 -165.57 23 1 ILE A 174 ? ? -32.64 138.28 24 1 GLU A 182 ? ? -60.59 -98.64 25 1 ALA A 183 ? ? 46.82 -126.27 26 1 GLN A 184 ? ? 161.36 71.37 27 1 ASP A 209 ? ? 36.36 -148.43 28 1 PHE A 210 ? ? -111.97 -91.92 29 1 ARG A 211 ? ? 48.43 -129.27 30 1 SER A 212 ? ? 151.91 -17.94 31 1 ASN A 213 ? ? -35.27 141.08 32 1 LEU A 214 ? ? -12.88 -64.57 33 1 HIS A 289 ? ? -130.40 -31.82 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 42 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 43 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -139.29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -19 ? A MSE 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A GLU 293 ? A GLU 313 20 1 Y 1 A TYR 294 ? A TYR 314 21 1 Y 1 A CYS 295 ? A CYS 315 22 1 Y 1 A LEU 296 ? A LEU 316 23 1 Y 1 A LYS 297 ? A LYS 317 24 1 Y 1 A THR 298 ? A THR 318 25 1 Y 1 A GLY 299 ? A GLY 319 26 1 Y 1 A GLY 300 ? A GLY 320 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 'GLUTAMIC ACID' GLU 4 'SULFATE ION' SO4 5 water HOH #