data_4J12 # _entry.id 4J12 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4J12 RCSB RCSB077461 WWPDB D_1000077461 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4J12 _pdbx_database_status.recvd_initial_deposition_date 2013-01-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ishino, T.' 1 ? 'Wang, M.' 2 ? 'Mosyak, L.' 3 ? 'Tam, A.' 4 ? 'Duan, W.' 5 ? 'Svenson, K.' 6 ? 'Joyce, A.' 7 ? ;O'Hara, D. ; 8 ? 'Lin, L.' 9 ? 'Somers, W.' 10 ? 'Kriz, R.' 11 ? # _citation.id primary _citation.title 'Engineering a Monomeric Fc Domain Modality by N-Glycosylation for the Half-life Extension of Biotherapeutics.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 16529 _citation.page_last 16537 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23615911 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.457689 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ishino, T.' 1 ? primary 'Wang, M.' 2 ? primary 'Mosyak, L.' 3 ? primary 'Tam, A.' 4 ? primary 'Duan, W.' 5 ? primary 'Svenson, K.' 6 ? primary 'Joyce, A.' 7 ? primary ;O'Hara, D.M. ; 8 ? primary 'Lin, L.' 9 ? primary 'Somers, W.S.' 10 ? primary 'Kriz, R.' 11 ? # _cell.entry_id 4J12 _cell.length_a 64.224 _cell.length_b 64.224 _cell.length_c 146.937 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4J12 _symmetry.space_group_name_H-M 'P 31 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'human Fc fragment' 23787.768 1 ? 'N130S, N173Y, T175K' 'unp residues 137-345' ? 2 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1317.209 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 water nat water 18.015 159 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL NGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVNLTCLVKGFYPSDIAVEWESNGQPENNYKTT PPVLDSDGSFFLNSTLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLS ; _entity_poly.pdbx_seq_one_letter_code_can ;NGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL NGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVNLTCLVKGFYPSDIAVEWESNGQPENNYKTT PPVLDSDGSFFLNSTLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 GLY n 1 3 GLY n 1 4 PRO n 1 5 SER n 1 6 VAL n 1 7 PHE n 1 8 LEU n 1 9 PHE n 1 10 PRO n 1 11 PRO n 1 12 LYS n 1 13 PRO n 1 14 LYS n 1 15 ASP n 1 16 THR n 1 17 LEU n 1 18 MET n 1 19 ILE n 1 20 SER n 1 21 ARG n 1 22 THR n 1 23 PRO n 1 24 GLU n 1 25 VAL n 1 26 THR n 1 27 CYS n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 ASP n 1 32 VAL n 1 33 SER n 1 34 HIS n 1 35 GLU n 1 36 ASP n 1 37 PRO n 1 38 GLU n 1 39 VAL n 1 40 LYS n 1 41 PHE n 1 42 ASN n 1 43 TRP n 1 44 TYR n 1 45 VAL n 1 46 ASP n 1 47 GLY n 1 48 VAL n 1 49 GLU n 1 50 VAL n 1 51 HIS n 1 52 ASN n 1 53 ALA n 1 54 LYS n 1 55 THR n 1 56 LYS n 1 57 PRO n 1 58 ARG n 1 59 GLU n 1 60 GLU n 1 61 GLN n 1 62 TYR n 1 63 ASN n 1 64 SER n 1 65 THR n 1 66 TYR n 1 67 ARG n 1 68 VAL n 1 69 VAL n 1 70 SER n 1 71 VAL n 1 72 LEU n 1 73 THR n 1 74 VAL n 1 75 LEU n 1 76 HIS n 1 77 GLN n 1 78 ASP n 1 79 TRP n 1 80 LEU n 1 81 ASN n 1 82 GLY n 1 83 LYS n 1 84 GLU n 1 85 TYR n 1 86 LYS n 1 87 CYS n 1 88 LYS n 1 89 VAL n 1 90 SER n 1 91 ASN n 1 92 LYS n 1 93 ALA n 1 94 LEU n 1 95 PRO n 1 96 ALA n 1 97 PRO n 1 98 ILE n 1 99 GLU n 1 100 LYS n 1 101 THR n 1 102 ILE n 1 103 SER n 1 104 LYS n 1 105 ALA n 1 106 LYS n 1 107 GLY n 1 108 GLN n 1 109 PRO n 1 110 ARG n 1 111 GLU n 1 112 PRO n 1 113 GLN n 1 114 VAL n 1 115 TYR n 1 116 THR n 1 117 LEU n 1 118 PRO n 1 119 PRO n 1 120 SER n 1 121 ARG n 1 122 GLU n 1 123 GLU n 1 124 MET n 1 125 THR n 1 126 LYS n 1 127 ASN n 1 128 GLN n 1 129 VAL n 1 130 ASN n 1 131 LEU n 1 132 THR n 1 133 CYS n 1 134 LEU n 1 135 VAL n 1 136 LYS n 1 137 GLY n 1 138 PHE n 1 139 TYR n 1 140 PRO n 1 141 SER n 1 142 ASP n 1 143 ILE n 1 144 ALA n 1 145 VAL n 1 146 GLU n 1 147 TRP n 1 148 GLU n 1 149 SER n 1 150 ASN n 1 151 GLY n 1 152 GLN n 1 153 PRO n 1 154 GLU n 1 155 ASN n 1 156 ASN n 1 157 TYR n 1 158 LYS n 1 159 THR n 1 160 THR n 1 161 PRO n 1 162 PRO n 1 163 VAL n 1 164 LEU n 1 165 ASP n 1 166 SER n 1 167 ASP n 1 168 GLY n 1 169 SER n 1 170 PHE n 1 171 PHE n 1 172 LEU n 1 173 ASN n 1 174 SER n 1 175 THR n 1 176 LEU n 1 177 THR n 1 178 VAL n 1 179 ASP n 1 180 LYS n 1 181 SER n 1 182 ARG n 1 183 TRP n 1 184 GLN n 1 185 GLN n 1 186 GLY n 1 187 ASN n 1 188 VAL n 1 189 PHE n 1 190 SER n 1 191 CYS n 1 192 SER n 1 193 VAL n 1 194 MET n 1 195 HIS n 1 196 GLU n 1 197 ALA n 1 198 LEU n 1 199 HIS n 1 200 ASN n 1 201 HIS n 1 202 TYR n 1 203 THR n 1 204 GLN n 1 205 LYS n 1 206 SER n 1 207 LEU n 1 208 SER n 1 209 LEU n 1 210 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6PYX1_HUMAN _struct_ref.pdbx_db_accession Q6PYX1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN GKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLS ; _struct_ref.pdbx_align_begin 137 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4J12 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 210 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6PYX1 _struct_ref_seq.db_align_beg 137 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 345 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 236 _struct_ref_seq.pdbx_auth_seq_align_end 444 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4J12 ASN A 1 ? UNP Q6PYX1 ? ? 'expression tag' 235 1 1 4J12 ASN A 130 ? UNP Q6PYX1 SER 265 'engineered mutation' 364 2 1 4J12 ASN A 173 ? UNP Q6PYX1 TYR 308 'engineered mutation' 407 3 1 4J12 THR A 175 ? UNP Q6PYX1 LYS 310 'engineered mutation' 409 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4J12 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.68 _exptl_crystal.density_percent_sol 66.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details '2.2 Mammonium sulfate and 200 mM sodium fluoride , pH 5, EVAPORATION, temperature 300K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 270 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 4J12 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 26861 _reflns.number_all 26861 _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 39.82 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4J12 _refine.ls_number_reflns_obs 26861 _refine.ls_number_reflns_all 26861 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.11 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 96.89 _refine.ls_R_factor_obs 0.2230 _refine.ls_R_factor_all 0.2230 _refine.ls_R_factor_R_work 0.2222 _refine.ls_R_factor_R_free 0.2380 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.91 _refine.ls_number_reflns_R_free 1319 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9495 _refine.correlation_coeff_Fo_to_Fc_free 0.9426 _refine.B_iso_mean 49.35 _refine.aniso_B[1][1] -0.5078 _refine.aniso_B[2][2] -0.5078 _refine.aniso_B[3][3] 1.0155 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.136 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4J12 _refine_analyze.Luzzati_coordinate_error_obs 0.308 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1665 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 103 _refine_hist.number_atoms_solvent 159 _refine_hist.number_atoms_total 1927 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 32.11 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.009 ? 2.00 1834 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.15 ? 2.00 2515 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 599 SINUSOIDAL 'X-RAY DIFFRACTION' t_incorr_chiral_ct ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 51 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 253 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 1834 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_omega_torsion 3.18 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 17.20 ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 256 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 2059 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 13 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.98 _refine_ls_shell.number_reflns_R_work 2276 _refine_ls_shell.R_factor_R_work 0.2519 _refine_ls_shell.percent_reflns_obs 96.89 _refine_ls_shell.R_factor_R_free 0.2389 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.73 _refine_ls_shell.number_reflns_R_free 113 _refine_ls_shell.number_reflns_all 2389 _refine_ls_shell.R_factor_all 0.2513 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4J12 _struct.title 'monomeric Fc' _struct.pdbx_descriptor 'Hepatitis B virus receptor binding protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4J12 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'immunoglobulin fold, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 12 ? MET A 18 ? LYS A 246 MET A 252 1 ? 7 HELX_P HELX_P2 2 LEU A 75 ? ASN A 81 ? LEU A 309 ASN A 315 1 ? 7 HELX_P HELX_P3 3 SER A 120 ? THR A 125 ? SER A 354 THR A 359 1 ? 6 HELX_P HELX_P4 4 LYS A 180 ? GLN A 185 ? LYS A 414 GLN A 419 1 ? 6 HELX_P HELX_P5 5 LEU A 198 ? ASN A 200 ? LEU A 432 ASN A 434 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 87 SG ? ? A CYS 261 A CYS 321 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf2 disulf ? ? A CYS 133 SG ? ? ? 1_555 A CYS 191 SG ? ? A CYS 367 A CYS 425 1_555 ? ? ? ? ? ? ? 2.028 ? ? covale1 covale one ? A ASN 63 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 297 B NAG 1 1_555 ? ? ? ? ? ? ? 1.428 ? N-Glycosylation covale2 covale one ? A ASN 130 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 364 A NAG 508 1_555 ? ? ? ? ? ? ? 1.403 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale5 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.416 ? ? covale6 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 6 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale7 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 4 B NAG 5 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale8 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 6 B NAG 7 1_555 ? ? ? ? ? ? ? 1.409 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 2 A . ? GLY 236 A GLY 3 A ? GLY 237 A 1 1.05 2 TYR 139 A . ? TYR 373 A PRO 140 A ? PRO 374 A 1 -3.29 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 5 ? PHE A 9 ? SER A 239 PHE A 243 A 2 GLU A 24 ? VAL A 32 ? GLU A 258 VAL A 266 A 3 TYR A 66 ? THR A 73 ? TYR A 300 THR A 307 A 4 LYS A 54 ? THR A 55 ? LYS A 288 THR A 289 B 1 SER A 5 ? PHE A 9 ? SER A 239 PHE A 243 B 2 GLU A 24 ? VAL A 32 ? GLU A 258 VAL A 266 B 3 TYR A 66 ? THR A 73 ? TYR A 300 THR A 307 B 4 GLU A 59 ? GLU A 60 ? GLU A 293 GLU A 294 C 1 VAL A 48 ? VAL A 50 ? VAL A 282 VAL A 284 C 2 LYS A 40 ? VAL A 45 ? LYS A 274 VAL A 279 C 3 TYR A 85 ? SER A 90 ? TYR A 319 SER A 324 C 4 ILE A 98 ? ILE A 102 ? ILE A 332 ILE A 336 D 1 GLN A 113 ? LEU A 117 ? GLN A 347 LEU A 351 D 2 GLN A 128 ? PHE A 138 ? GLN A 362 PHE A 372 D 3 PHE A 170 ? ASP A 179 ? PHE A 404 ASP A 413 D 4 TYR A 157 ? THR A 159 ? TYR A 391 THR A 393 E 1 GLN A 113 ? LEU A 117 ? GLN A 347 LEU A 351 E 2 GLN A 128 ? PHE A 138 ? GLN A 362 PHE A 372 E 3 PHE A 170 ? ASP A 179 ? PHE A 404 ASP A 413 E 4 VAL A 163 ? LEU A 164 ? VAL A 397 LEU A 398 F 1 GLN A 152 ? GLU A 154 ? GLN A 386 GLU A 388 F 2 ALA A 144 ? SER A 149 ? ALA A 378 SER A 383 F 3 PHE A 189 ? MET A 194 ? PHE A 423 MET A 428 F 4 TYR A 202 ? LEU A 207 ? TYR A 436 LEU A 441 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 7 ? N PHE A 241 O VAL A 28 ? O VAL A 262 A 2 3 N VAL A 25 ? N VAL A 259 O LEU A 72 ? O LEU A 306 A 3 4 O VAL A 71 ? O VAL A 305 N LYS A 54 ? N LYS A 288 B 1 2 N PHE A 7 ? N PHE A 241 O VAL A 28 ? O VAL A 262 B 2 3 N VAL A 25 ? N VAL A 259 O LEU A 72 ? O LEU A 306 B 3 4 O ARG A 67 ? O ARG A 301 N GLU A 59 ? N GLU A 293 C 1 2 O VAL A 48 ? O VAL A 282 N VAL A 45 ? N VAL A 279 C 2 3 N ASN A 42 ? N ASN A 276 O LYS A 88 ? O LYS A 322 C 3 4 N VAL A 89 ? N VAL A 323 O ILE A 98 ? O ILE A 332 D 1 2 N TYR A 115 ? N TYR A 349 O LEU A 134 ? O LEU A 368 D 2 3 N VAL A 129 ? N VAL A 363 O VAL A 178 ? O VAL A 412 D 3 4 O THR A 175 ? O THR A 409 N LYS A 158 ? N LYS A 392 E 1 2 N TYR A 115 ? N TYR A 349 O LEU A 134 ? O LEU A 368 E 2 3 N VAL A 129 ? N VAL A 363 O VAL A 178 ? O VAL A 412 E 3 4 O PHE A 171 ? O PHE A 405 N VAL A 163 ? N VAL A 397 F 1 2 O GLN A 152 ? O GLN A 386 N SER A 149 ? N SER A 383 F 2 3 N GLU A 148 ? N GLU A 382 O SER A 190 ? O SER A 424 F 3 4 N CYS A 191 ? N CYS A 425 O LYS A 205 ? O LYS A 439 # _database_PDB_matrix.entry_id 4J12 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4J12 _atom_sites.fract_transf_matrix[1][1] 0.015571 _atom_sites.fract_transf_matrix[1][2] 0.008990 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017979 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006806 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 235 ? ? ? A . n A 1 2 GLY 2 236 236 GLY GLY A . n A 1 3 GLY 3 237 237 GLY GLY A . n A 1 4 PRO 4 238 238 PRO PRO A . n A 1 5 SER 5 239 239 SER SER A . n A 1 6 VAL 6 240 240 VAL VAL A . n A 1 7 PHE 7 241 241 PHE PHE A . n A 1 8 LEU 8 242 242 LEU LEU A . n A 1 9 PHE 9 243 243 PHE PHE A . n A 1 10 PRO 10 244 244 PRO PRO A . n A 1 11 PRO 11 245 245 PRO PRO A . n A 1 12 LYS 12 246 246 LYS LYS A . n A 1 13 PRO 13 247 247 PRO PRO A . n A 1 14 LYS 14 248 248 LYS LYS A . n A 1 15 ASP 15 249 249 ASP ASP A . n A 1 16 THR 16 250 250 THR THR A . n A 1 17 LEU 17 251 251 LEU LEU A . n A 1 18 MET 18 252 252 MET MET A . n A 1 19 ILE 19 253 253 ILE ILE A . n A 1 20 SER 20 254 254 SER SER A . n A 1 21 ARG 21 255 255 ARG ARG A . n A 1 22 THR 22 256 256 THR THR A . n A 1 23 PRO 23 257 257 PRO PRO A . n A 1 24 GLU 24 258 258 GLU GLU A . n A 1 25 VAL 25 259 259 VAL VAL A . n A 1 26 THR 26 260 260 THR THR A . n A 1 27 CYS 27 261 261 CYS CYS A . n A 1 28 VAL 28 262 262 VAL VAL A . n A 1 29 VAL 29 263 263 VAL VAL A . n A 1 30 VAL 30 264 264 VAL VAL A . n A 1 31 ASP 31 265 265 ASP ASP A . n A 1 32 VAL 32 266 266 VAL VAL A . n A 1 33 SER 33 267 267 SER SER A . n A 1 34 HIS 34 268 268 HIS HIS A . n A 1 35 GLU 35 269 269 GLU GLU A . n A 1 36 ASP 36 270 270 ASP ASP A . n A 1 37 PRO 37 271 271 PRO PRO A . n A 1 38 GLU 38 272 272 GLU GLU A . n A 1 39 VAL 39 273 273 VAL VAL A . n A 1 40 LYS 40 274 274 LYS LYS A . n A 1 41 PHE 41 275 275 PHE PHE A . n A 1 42 ASN 42 276 276 ASN ASN A . n A 1 43 TRP 43 277 277 TRP TRP A . n A 1 44 TYR 44 278 278 TYR TYR A . n A 1 45 VAL 45 279 279 VAL VAL A . n A 1 46 ASP 46 280 280 ASP ASP A . n A 1 47 GLY 47 281 281 GLY GLY A . n A 1 48 VAL 48 282 282 VAL VAL A . n A 1 49 GLU 49 283 283 GLU GLU A . n A 1 50 VAL 50 284 284 VAL VAL A . n A 1 51 HIS 51 285 285 HIS HIS A . n A 1 52 ASN 52 286 286 ASN ASN A . n A 1 53 ALA 53 287 287 ALA ALA A . n A 1 54 LYS 54 288 288 LYS LYS A . n A 1 55 THR 55 289 289 THR THR A . n A 1 56 LYS 56 290 290 LYS LYS A . n A 1 57 PRO 57 291 291 PRO PRO A . n A 1 58 ARG 58 292 292 ARG ARG A . n A 1 59 GLU 59 293 293 GLU GLU A . n A 1 60 GLU 60 294 294 GLU GLU A . n A 1 61 GLN 61 295 295 GLN GLN A . n A 1 62 TYR 62 296 296 TYR TYR A . n A 1 63 ASN 63 297 297 ASN ASN A . n A 1 64 SER 64 298 298 SER SER A . n A 1 65 THR 65 299 299 THR THR A . n A 1 66 TYR 66 300 300 TYR TYR A . n A 1 67 ARG 67 301 301 ARG ARG A . n A 1 68 VAL 68 302 302 VAL VAL A . n A 1 69 VAL 69 303 303 VAL VAL A . n A 1 70 SER 70 304 304 SER SER A . n A 1 71 VAL 71 305 305 VAL VAL A . n A 1 72 LEU 72 306 306 LEU LEU A . n A 1 73 THR 73 307 307 THR THR A . n A 1 74 VAL 74 308 308 VAL VAL A . n A 1 75 LEU 75 309 309 LEU LEU A . n A 1 76 HIS 76 310 310 HIS HIS A . n A 1 77 GLN 77 311 311 GLN GLN A . n A 1 78 ASP 78 312 312 ASP ASP A . n A 1 79 TRP 79 313 313 TRP TRP A . n A 1 80 LEU 80 314 314 LEU LEU A . n A 1 81 ASN 81 315 315 ASN ASN A . n A 1 82 GLY 82 316 316 GLY GLY A . n A 1 83 LYS 83 317 317 LYS LYS A . n A 1 84 GLU 84 318 318 GLU GLU A . n A 1 85 TYR 85 319 319 TYR TYR A . n A 1 86 LYS 86 320 320 LYS LYS A . n A 1 87 CYS 87 321 321 CYS CYS A . n A 1 88 LYS 88 322 322 LYS LYS A . n A 1 89 VAL 89 323 323 VAL VAL A . n A 1 90 SER 90 324 324 SER SER A . n A 1 91 ASN 91 325 325 ASN ASN A . n A 1 92 LYS 92 326 326 LYS LYS A . n A 1 93 ALA 93 327 327 ALA ALA A . n A 1 94 LEU 94 328 328 LEU LEU A . n A 1 95 PRO 95 329 329 PRO PRO A . n A 1 96 ALA 96 330 330 ALA ALA A . n A 1 97 PRO 97 331 331 PRO PRO A . n A 1 98 ILE 98 332 332 ILE ILE A . n A 1 99 GLU 99 333 333 GLU GLU A . n A 1 100 LYS 100 334 334 LYS LYS A . n A 1 101 THR 101 335 335 THR THR A . n A 1 102 ILE 102 336 336 ILE ILE A . n A 1 103 SER 103 337 337 SER SER A . n A 1 104 LYS 104 338 338 LYS LYS A . n A 1 105 ALA 105 339 339 ALA ALA A . n A 1 106 LYS 106 340 340 LYS LYS A . n A 1 107 GLY 107 341 341 GLY GLY A . n A 1 108 GLN 108 342 342 GLN GLN A . n A 1 109 PRO 109 343 343 PRO PRO A . n A 1 110 ARG 110 344 344 ARG ARG A . n A 1 111 GLU 111 345 345 GLU GLU A . n A 1 112 PRO 112 346 346 PRO PRO A . n A 1 113 GLN 113 347 347 GLN GLN A . n A 1 114 VAL 114 348 348 VAL VAL A . n A 1 115 TYR 115 349 349 TYR TYR A . n A 1 116 THR 116 350 350 THR THR A . n A 1 117 LEU 117 351 351 LEU LEU A . n A 1 118 PRO 118 352 352 PRO PRO A . n A 1 119 PRO 119 353 353 PRO PRO A . n A 1 120 SER 120 354 354 SER SER A . n A 1 121 ARG 121 355 355 ARG ARG A . n A 1 122 GLU 122 356 356 GLU GLU A . n A 1 123 GLU 123 357 357 GLU GLU A . n A 1 124 MET 124 358 358 MET MET A . n A 1 125 THR 125 359 359 THR THR A . n A 1 126 LYS 126 360 360 LYS LYS A . n A 1 127 ASN 127 361 361 ASN ASN A . n A 1 128 GLN 128 362 362 GLN GLN A . n A 1 129 VAL 129 363 363 VAL VAL A . n A 1 130 ASN 130 364 364 ASN ASN A . n A 1 131 LEU 131 365 365 LEU LEU A . n A 1 132 THR 132 366 366 THR THR A . n A 1 133 CYS 133 367 367 CYS CYS A . n A 1 134 LEU 134 368 368 LEU LEU A . n A 1 135 VAL 135 369 369 VAL VAL A . n A 1 136 LYS 136 370 370 LYS LYS A . n A 1 137 GLY 137 371 371 GLY GLY A . n A 1 138 PHE 138 372 372 PHE PHE A . n A 1 139 TYR 139 373 373 TYR TYR A . n A 1 140 PRO 140 374 374 PRO PRO A . n A 1 141 SER 141 375 375 SER SER A . n A 1 142 ASP 142 376 376 ASP ASP A . n A 1 143 ILE 143 377 377 ILE ILE A . n A 1 144 ALA 144 378 378 ALA ALA A . n A 1 145 VAL 145 379 379 VAL VAL A . n A 1 146 GLU 146 380 380 GLU GLU A . n A 1 147 TRP 147 381 381 TRP TRP A . n A 1 148 GLU 148 382 382 GLU GLU A . n A 1 149 SER 149 383 383 SER SER A . n A 1 150 ASN 150 384 384 ASN ASN A . n A 1 151 GLY 151 385 385 GLY GLY A . n A 1 152 GLN 152 386 386 GLN GLN A . n A 1 153 PRO 153 387 387 PRO PRO A . n A 1 154 GLU 154 388 388 GLU GLU A . n A 1 155 ASN 155 389 389 ASN ASN A . n A 1 156 ASN 156 390 390 ASN ASN A . n A 1 157 TYR 157 391 391 TYR TYR A . n A 1 158 LYS 158 392 392 LYS LYS A . n A 1 159 THR 159 393 393 THR THR A . n A 1 160 THR 160 394 394 THR THR A . n A 1 161 PRO 161 395 395 PRO PRO A . n A 1 162 PRO 162 396 396 PRO PRO A . n A 1 163 VAL 163 397 397 VAL VAL A . n A 1 164 LEU 164 398 398 LEU LEU A . n A 1 165 ASP 165 399 399 ASP ASP A . n A 1 166 SER 166 400 400 SER SER A . n A 1 167 ASP 167 401 401 ASP ASP A . n A 1 168 GLY 168 402 402 GLY GLY A . n A 1 169 SER 169 403 403 SER SER A . n A 1 170 PHE 170 404 404 PHE PHE A . n A 1 171 PHE 171 405 405 PHE PHE A . n A 1 172 LEU 172 406 406 LEU LEU A . n A 1 173 ASN 173 407 407 ASN ASN A . n A 1 174 SER 174 408 408 SER SER A . n A 1 175 THR 175 409 409 THR THR A . n A 1 176 LEU 176 410 410 LEU LEU A . n A 1 177 THR 177 411 411 THR THR A . n A 1 178 VAL 178 412 412 VAL VAL A . n A 1 179 ASP 179 413 413 ASP ASP A . n A 1 180 LYS 180 414 414 LYS LYS A . n A 1 181 SER 181 415 415 SER SER A . n A 1 182 ARG 182 416 416 ARG ARG A . n A 1 183 TRP 183 417 417 TRP TRP A . n A 1 184 GLN 184 418 418 GLN GLN A . n A 1 185 GLN 185 419 419 GLN GLN A . n A 1 186 GLY 186 420 420 GLY GLY A . n A 1 187 ASN 187 421 421 ASN ASN A . n A 1 188 VAL 188 422 422 VAL VAL A . n A 1 189 PHE 189 423 423 PHE PHE A . n A 1 190 SER 190 424 424 SER SER A . n A 1 191 CYS 191 425 425 CYS CYS A . n A 1 192 SER 192 426 426 SER SER A . n A 1 193 VAL 193 427 427 VAL VAL A . n A 1 194 MET 194 428 428 MET MET A . n A 1 195 HIS 195 429 429 HIS HIS A . n A 1 196 GLU 196 430 430 GLU GLU A . n A 1 197 ALA 197 431 431 ALA ALA A . n A 1 198 LEU 198 432 432 LEU LEU A . n A 1 199 HIS 199 433 433 HIS HIS A . n A 1 200 ASN 200 434 434 ASN ASN A . n A 1 201 HIS 201 435 435 HIS HIS A . n A 1 202 TYR 202 436 436 TYR TYR A . n A 1 203 THR 203 437 437 THR THR A . n A 1 204 GLN 204 438 438 GLN GLN A . n A 1 205 LYS 205 439 439 LYS LYS A . n A 1 206 SER 206 440 440 SER SER A . n A 1 207 LEU 207 441 441 LEU LEU A . n A 1 208 SER 208 442 442 SER SER A . n A 1 209 LEU 209 443 443 LEU LEU A . n A 1 210 SER 210 444 444 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 508 1 NAG NAG A . D 4 HOH 1 601 1 HOH HOH A . D 4 HOH 2 602 2 HOH HOH A . D 4 HOH 3 603 3 HOH HOH A . D 4 HOH 4 604 4 HOH HOH A . D 4 HOH 5 605 5 HOH HOH A . D 4 HOH 6 606 6 HOH HOH A . D 4 HOH 7 607 7 HOH HOH A . D 4 HOH 8 608 8 HOH HOH A . D 4 HOH 9 609 9 HOH HOH A . D 4 HOH 10 610 10 HOH HOH A . D 4 HOH 11 611 11 HOH HOH A . D 4 HOH 12 612 12 HOH HOH A . D 4 HOH 13 613 13 HOH HOH A . D 4 HOH 14 614 14 HOH HOH A . D 4 HOH 15 615 15 HOH HOH A . D 4 HOH 16 616 16 HOH HOH A . D 4 HOH 17 617 17 HOH HOH A . D 4 HOH 18 618 18 HOH HOH A . D 4 HOH 19 619 19 HOH HOH A . D 4 HOH 20 620 20 HOH HOH A . D 4 HOH 21 621 21 HOH HOH A . D 4 HOH 22 622 22 HOH HOH A . D 4 HOH 23 623 23 HOH HOH A . D 4 HOH 24 624 24 HOH HOH A . D 4 HOH 25 625 25 HOH HOH A . D 4 HOH 26 626 26 HOH HOH A . D 4 HOH 27 627 27 HOH HOH A . D 4 HOH 28 628 28 HOH HOH A . D 4 HOH 29 629 29 HOH HOH A . D 4 HOH 30 630 30 HOH HOH A . D 4 HOH 31 631 31 HOH HOH A . D 4 HOH 32 632 32 HOH HOH A . D 4 HOH 33 633 33 HOH HOH A . D 4 HOH 34 634 34 HOH HOH A . D 4 HOH 35 635 35 HOH HOH A . D 4 HOH 36 636 36 HOH HOH A . D 4 HOH 37 637 37 HOH HOH A . D 4 HOH 38 638 38 HOH HOH A . D 4 HOH 39 639 39 HOH HOH A . D 4 HOH 40 640 40 HOH HOH A . D 4 HOH 41 641 41 HOH HOH A . D 4 HOH 42 642 42 HOH HOH A . D 4 HOH 43 643 43 HOH HOH A . D 4 HOH 44 644 44 HOH HOH A . D 4 HOH 45 645 45 HOH HOH A . D 4 HOH 46 646 46 HOH HOH A . D 4 HOH 47 647 47 HOH HOH A . D 4 HOH 48 648 48 HOH HOH A . D 4 HOH 49 649 49 HOH HOH A . D 4 HOH 50 650 50 HOH HOH A . D 4 HOH 51 651 51 HOH HOH A . D 4 HOH 52 652 52 HOH HOH A . D 4 HOH 53 653 53 HOH HOH A . D 4 HOH 54 654 54 HOH HOH A . D 4 HOH 55 655 55 HOH HOH A . D 4 HOH 56 656 56 HOH HOH A . D 4 HOH 57 657 57 HOH HOH A . D 4 HOH 58 658 58 HOH HOH A . D 4 HOH 59 659 59 HOH HOH A . D 4 HOH 60 660 60 HOH HOH A . D 4 HOH 61 661 61 HOH HOH A . D 4 HOH 62 662 62 HOH HOH A . D 4 HOH 63 663 63 HOH HOH A . D 4 HOH 64 664 64 HOH HOH A . D 4 HOH 65 665 65 HOH HOH A . D 4 HOH 66 666 66 HOH HOH A . D 4 HOH 67 667 67 HOH HOH A . D 4 HOH 68 668 68 HOH HOH A . D 4 HOH 69 669 69 HOH HOH A . D 4 HOH 70 670 70 HOH HOH A . D 4 HOH 71 671 71 HOH HOH A . D 4 HOH 72 672 72 HOH HOH A . D 4 HOH 73 673 73 HOH HOH A . D 4 HOH 74 674 74 HOH HOH A . D 4 HOH 75 675 75 HOH HOH A . D 4 HOH 76 676 76 HOH HOH A . D 4 HOH 77 677 77 HOH HOH A . D 4 HOH 78 678 78 HOH HOH A . D 4 HOH 79 679 79 HOH HOH A . D 4 HOH 80 680 80 HOH HOH A . D 4 HOH 81 681 81 HOH HOH A . D 4 HOH 82 682 82 HOH HOH A . D 4 HOH 83 683 83 HOH HOH A . D 4 HOH 84 684 84 HOH HOH A . D 4 HOH 85 685 85 HOH HOH A . D 4 HOH 86 686 86 HOH HOH A . D 4 HOH 87 687 87 HOH HOH A . D 4 HOH 88 688 88 HOH HOH A . D 4 HOH 89 689 89 HOH HOH A . D 4 HOH 90 690 90 HOH HOH A . D 4 HOH 91 691 91 HOH HOH A . D 4 HOH 92 692 92 HOH HOH A . D 4 HOH 93 693 93 HOH HOH A . D 4 HOH 94 694 94 HOH HOH A . D 4 HOH 95 695 95 HOH HOH A . D 4 HOH 96 696 96 HOH HOH A . D 4 HOH 97 697 97 HOH HOH A . D 4 HOH 98 698 98 HOH HOH A . D 4 HOH 99 699 99 HOH HOH A . D 4 HOH 100 700 100 HOH HOH A . D 4 HOH 101 701 101 HOH HOH A . D 4 HOH 102 702 102 HOH HOH A . D 4 HOH 103 703 103 HOH HOH A . D 4 HOH 104 704 104 HOH HOH A . D 4 HOH 105 705 105 HOH HOH A . D 4 HOH 106 706 106 HOH HOH A . D 4 HOH 107 707 107 HOH HOH A . D 4 HOH 108 708 108 HOH HOH A . D 4 HOH 109 709 109 HOH HOH A . D 4 HOH 110 710 110 HOH HOH A . D 4 HOH 111 711 111 HOH HOH A . D 4 HOH 112 712 112 HOH HOH A . D 4 HOH 113 713 113 HOH HOH A . D 4 HOH 114 714 114 HOH HOH A . D 4 HOH 115 715 115 HOH HOH A . D 4 HOH 116 716 116 HOH HOH A . D 4 HOH 117 717 117 HOH HOH A . D 4 HOH 118 718 118 HOH HOH A . D 4 HOH 119 719 119 HOH HOH A . D 4 HOH 120 720 120 HOH HOH A . D 4 HOH 121 721 121 HOH HOH A . D 4 HOH 122 722 122 HOH HOH A . D 4 HOH 123 723 123 HOH HOH A . D 4 HOH 124 724 124 HOH HOH A . D 4 HOH 125 725 125 HOH HOH A . D 4 HOH 126 726 126 HOH HOH A . D 4 HOH 127 727 127 HOH HOH A . D 4 HOH 128 728 128 HOH HOH A . D 4 HOH 129 729 129 HOH HOH A . D 4 HOH 130 730 130 HOH HOH A . D 4 HOH 131 731 131 HOH HOH A . D 4 HOH 132 732 132 HOH HOH A . D 4 HOH 133 733 133 HOH HOH A . D 4 HOH 134 734 134 HOH HOH A . D 4 HOH 135 735 135 HOH HOH A . D 4 HOH 136 736 136 HOH HOH A . D 4 HOH 137 737 137 HOH HOH A . D 4 HOH 138 738 138 HOH HOH A . D 4 HOH 139 739 139 HOH HOH A . D 4 HOH 140 740 140 HOH HOH A . D 4 HOH 141 741 141 HOH HOH A . D 4 HOH 142 742 142 HOH HOH A . D 4 HOH 143 743 143 HOH HOH A . D 4 HOH 144 744 144 HOH HOH A . D 4 HOH 145 745 145 HOH HOH A . D 4 HOH 146 746 146 HOH HOH A . D 4 HOH 147 747 147 HOH HOH A . D 4 HOH 148 748 148 HOH HOH A . D 4 HOH 149 749 149 HOH HOH A . D 4 HOH 150 750 150 HOH HOH A . D 4 HOH 151 751 151 HOH HOH A . D 4 HOH 152 752 152 HOH HOH A . D 4 HOH 153 753 153 HOH HOH A . D 4 HOH 154 754 154 HOH HOH A . D 4 HOH 155 755 155 HOH HOH A . D 4 HOH 156 756 156 HOH HOH A . D 4 HOH 157 757 157 HOH HOH A . D 4 HOH 158 758 158 HOH HOH A . D 4 HOH 159 759 159 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 130 A ASN 364 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 63 A ASN 297 ? ASN 'GLYCOSYLATION SITE' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 7200 ? 2 MORE 54 ? 2 'SSA (A^2)' 22780 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 x,x-y,-z 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-01 2 'Structure model' 1 1 2013-07-24 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2018-06-13 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Atomic model' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' citation 3 4 'Structure model' diffrn_radiation 4 5 'Structure model' atom_site 5 5 'Structure model' chem_comp 6 5 'Structure model' entity 7 5 'Structure model' pdbx_branch_scheme 8 5 'Structure model' pdbx_chem_comp_identifier 9 5 'Structure model' pdbx_entity_branch 10 5 'Structure model' pdbx_entity_branch_descriptor 11 5 'Structure model' pdbx_entity_branch_link 12 5 'Structure model' pdbx_entity_branch_list 13 5 'Structure model' pdbx_entity_nonpoly 14 5 'Structure model' pdbx_nonpoly_scheme 15 5 'Structure model' pdbx_struct_assembly_gen 16 5 'Structure model' struct_asym 17 5 'Structure model' struct_conn 18 5 'Structure model' struct_ref_seq_dif 19 5 'Structure model' struct_site 20 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_diffrn_radiation.pdbx_diffrn_protocol' 3 5 'Structure model' '_atom_site.auth_asym_id' 4 5 'Structure model' '_atom_site.auth_seq_id' 5 5 'Structure model' '_atom_site.label_asym_id' 6 5 'Structure model' '_atom_site.label_entity_id' 7 5 'Structure model' '_chem_comp.name' 8 5 'Structure model' '_chem_comp.type' 9 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 10 5 'Structure model' '_struct_conn.pdbx_dist_value' 11 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_struct_conn.pdbx_role' 13 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language HKL-2000 'data collection' . ? 1 ? ? ? ? PHASES phasing . ? 2 ? ? ? ? BUSTER refinement 2.11.1 ? 3 ? ? ? ? HKL-2000 'data reduction' . ? 4 ? ? ? ? HKL-2000 'data scaling' . ? 5 ? ? ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 292 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OD1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ASN _pdbx_validate_symm_contact.auth_seq_id_2 421 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_455 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 360 ? ? -69.84 -176.20 2 1 HIS A 435 ? ? 58.10 18.80 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ASN _pdbx_unobs_or_zero_occ_residues.auth_seq_id 235 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ASN _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 1 n B 2 NAG 2 B NAG 2 A NAG 2 n B 2 BMA 3 B BMA 3 A BMA 3 n B 2 MAN 4 B MAN 4 A MAN 4 n B 2 NAG 5 B NAG 5 A NAG 5 n B 2 MAN 6 B MAN 6 A MAN 7 n B 2 NAG 7 B NAG 7 A NAG 8 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-3-1/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1' WURCS PDB2Glycan 1.1.0 3 2 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 NAG C1 O1 4 MAN O2 HO2 sing ? 5 2 6 MAN C1 O1 3 BMA O6 HO6 sing ? 6 2 7 NAG C1 O1 6 MAN O2 HO2 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 NAG 5 n 2 MAN 6 n 2 NAG 7 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #