HEADER PROTEIN TRANSPORT 12-FEB-13 4J73 TITLE CRYSTAL STRUCTURE OF BETA'-COP/P25 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COATOMER SUBUNIT BETA'; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA'-COAT PROTEIN, BETA'-COP; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 9; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 229-236; COMPND 9 SYNONYM: P25, P24 FAMILY PROTEIN ALPHA-2, P24ALPHA2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: BOVINE; SOURCE 9 ORGANISM_TAXID: 9913 KEYWDS BETA PROPELLER, DILYSINE MOTIF, ER RETRIEVAL SIGNAL, COATOMER CARGO KEYWDS 2 RECOGNITION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.MA,J.GOLDBERG REVDAT 3 28-FEB-24 4J73 1 SEQADV REVDAT 2 17-APR-13 4J73 1 JRNL REVDAT 1 27-MAR-13 4J73 0 JRNL AUTH W.MA,J.GOLDBERG JRNL TITL RULES FOR THE RECOGNITION OF DILYSINE RETRIEVAL MOTIFS BY JRNL TITL 2 COATOMER. JRNL REF EMBO J. V. 32 926 2013 JRNL REFN ISSN 0261-4189 JRNL PMID 23481256 JRNL DOI 10.1038/EMBOJ.2013.41 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 48785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8307 - 3.4658 0.96 3573 153 0.1706 0.1820 REMARK 3 2 3.4658 - 2.7514 1.00 3520 150 0.1660 0.1946 REMARK 3 3 2.7514 - 2.4037 1.00 3460 148 0.1793 0.1816 REMARK 3 4 2.4037 - 2.1840 0.99 3455 148 0.1673 0.2047 REMARK 3 5 2.1840 - 2.0275 0.99 3419 146 0.1575 0.1942 REMARK 3 6 2.0275 - 1.9080 0.99 3423 147 0.1578 0.2010 REMARK 3 7 1.9080 - 1.8124 0.99 3401 144 0.1706 0.1989 REMARK 3 8 1.8124 - 1.7335 0.99 3414 146 0.1820 0.2066 REMARK 3 9 1.7335 - 1.6668 0.99 3403 145 0.1882 0.2525 REMARK 3 10 1.6668 - 1.6093 0.99 3389 145 0.1996 0.2291 REMARK 3 11 1.6093 - 1.5590 0.99 3377 144 0.2247 0.2361 REMARK 3 12 1.5590 - 1.5144 0.99 3345 143 0.2478 0.2764 REMARK 3 13 1.5144 - 1.4746 0.91 3130 132 0.2661 0.2747 REMARK 3 14 1.4746 - 1.4390 0.74 2479 106 0.2889 0.2666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2453 REMARK 3 ANGLE : 1.471 3347 REMARK 3 CHIRALITY : 0.100 375 REMARK 3 PLANARITY : 0.009 421 REMARK 3 DIHEDRAL : 13.334 855 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3702 5.6467 -28.4473 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.4396 REMARK 3 T33: 0.2416 T12: 0.0004 REMARK 3 T13: -0.0082 T23: 0.0956 REMARK 3 L TENSOR REMARK 3 L11: 0.3472 L22: 0.4857 REMARK 3 L33: 0.3312 L12: -0.0722 REMARK 3 L13: -0.2335 L23: -0.2610 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.4490 S13: 0.2044 REMARK 3 S21: -0.1212 S22: 0.0903 S23: 0.1165 REMARK 3 S31: -0.0349 S32: -0.0271 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4349 -11.1181 -16.1102 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.2157 REMARK 3 T33: 0.2080 T12: 0.0277 REMARK 3 T13: -0.0026 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.5512 L22: 0.4618 REMARK 3 L33: 1.1469 L12: -0.0879 REMARK 3 L13: -0.5090 L23: -0.2900 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.2494 S13: -0.1553 REMARK 3 S21: -0.0376 S22: -0.0120 S23: 0.0428 REMARK 3 S31: 0.1574 S32: 0.1120 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4962 7.9359 -10.1995 REMARK 3 T TENSOR REMARK 3 T11: 0.2472 T22: 0.1844 REMARK 3 T33: 0.2611 T12: 0.0062 REMARK 3 T13: 0.0088 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 0.9722 L22: 0.5662 REMARK 3 L33: 0.7871 L12: 0.3085 REMARK 3 L13: -0.1435 L23: -0.1481 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 0.1136 S13: 0.2090 REMARK 3 S21: 0.0680 S22: 0.0252 S23: 0.0932 REMARK 3 S31: -0.2054 S32: 0.0814 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2414 -4.1628 -18.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.3607 REMARK 3 T33: 0.3269 T12: 0.0272 REMARK 3 T13: -0.0436 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.0082 L22: 0.0159 REMARK 3 L33: 0.0100 L12: -0.0070 REMARK 3 L13: 0.0017 L23: -0.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.3182 S12: 0.0375 S13: -0.0028 REMARK 3 S21: -0.0859 S22: -0.2522 S23: 0.2026 REMARK 3 S31: -0.2424 S32: -0.0276 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48785 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.439 REMARK 200 RESOLUTION RANGE LOW (A) : 66.176 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 15.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.14750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.17600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.34800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.17600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.14750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.34800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 280 REMARK 465 THR A 281 REMARK 465 GLY A 282 REMARK 465 ARG A 283 REMARK 465 LYS A 284 REMARK 465 PHE B -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LEU A 266 CG CD1 CD2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 GLU B -3 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 583 O HOH A 628 1.89 REMARK 500 O HOH A 653 O HOH A 684 1.95 REMARK 500 N ASN A 285 O HOH A 580 1.96 REMARK 500 O HOH A 407 O HOH A 579 1.97 REMARK 500 O HOH A 513 O HOH A 610 1.97 REMARK 500 O HOH A 642 O HOH A 673 1.97 REMARK 500 O HOH A 595 O HOH A 681 1.98 REMARK 500 N GLU B -3 O HOH B 102 1.98 REMARK 500 OH TYR A 215 O HOH A 568 2.03 REMARK 500 O HOH A 487 O HOH A 531 2.04 REMARK 500 O HOH A 689 O HOH A 690 2.05 REMARK 500 O HOH A 655 O HOH A 662 2.10 REMARK 500 O HOH A 525 O HOH A 688 2.11 REMARK 500 O HOH A 495 O HOH A 555 2.11 REMARK 500 OE1 GLU A 140 O HOH A 623 2.13 REMARK 500 NH2 ARG A 185 O HOH A 465 2.14 REMARK 500 O HOH A 593 O HOH A 616 2.14 REMARK 500 O HOH B 107 O HOH B 109 2.14 REMARK 500 O HOH A 609 O HOH A 683 2.18 REMARK 500 O HOH B 102 O HOH B 104 2.18 REMARK 500 O HOH A 505 O HOH A 546 2.18 REMARK 500 O HOH A 520 O HOH A 585 2.19 REMARK 500 O HOH A 483 O HOH A 635 2.19 REMARK 500 O HOH A 469 O HOH A 673 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 674 O HOH B 111 1655 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 3 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 77 6.35 83.32 REMARK 500 ASP A 92 110.92 -162.75 REMARK 500 ASP A 152 86.00 -159.46 REMARK 500 ARG A 163 10.10 87.78 REMARK 500 LEU A 208 4.32 83.90 REMARK 500 GLU A 271 -143.34 65.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J77 RELATED DB: PDB REMARK 900 RELATED ID: 4J78 RELATED DB: PDB REMARK 900 RELATED ID: 4J79 RELATED DB: PDB REMARK 900 RELATED ID: 4J81 RELATED DB: PDB REMARK 900 RELATED ID: 4J82 RELATED DB: PDB REMARK 900 RELATED ID: 4J84 RELATED DB: PDB REMARK 900 RELATED ID: 4J86 RELATED DB: PDB REMARK 900 RELATED ID: 4J87 RELATED DB: PDB REMARK 900 RELATED ID: 4J8B RELATED DB: PDB REMARK 900 RELATED ID: 4J8G RELATED DB: PDB DBREF 4J73 A 1 301 UNP P41811 COPB2_YEAST 1 301 DBREF 4J73 B -4 2 UNP Q3T133 TMED9_BOVIN 229 235 SEQADV 4J73 ILE A 39 UNP P41811 LEU 39 CONFLICT SEQRES 1 A 301 MET LYS LEU ASP ILE LYS LYS THR PHE SER ASN ARG SER SEQRES 2 A 301 ASP ARG VAL LYS GLY ILE ASP PHE HIS PRO THR GLU PRO SEQRES 3 A 301 TRP VAL LEU THR THR LEU TYR SER GLY ARG VAL GLU ILE SEQRES 4 A 301 TRP ASN TYR GLU THR GLN VAL GLU VAL ARG SER ILE GLN SEQRES 5 A 301 VAL THR GLU THR PRO VAL ARG ALA GLY LYS PHE ILE ALA SEQRES 6 A 301 ARG LYS ASN TRP ILE ILE VAL GLY SER ASP ASP PHE ARG SEQRES 7 A 301 ILE ARG VAL PHE ASN TYR ASN THR GLY GLU LYS VAL VAL SEQRES 8 A 301 ASP PHE GLU ALA HIS PRO ASP TYR ILE ARG SER ILE ALA SEQRES 9 A 301 VAL HIS PRO THR LYS PRO TYR VAL LEU SER GLY SER ASP SEQRES 10 A 301 ASP LEU THR VAL LYS LEU TRP ASN TRP GLU ASN ASN TRP SEQRES 11 A 301 ALA LEU GLU GLN THR PHE GLU GLY HIS GLU HIS PHE VAL SEQRES 12 A 301 MET CYS VAL ALA PHE ASN PRO LYS ASP PRO SER THR PHE SEQRES 13 A 301 ALA SER GLY CYS LEU ASP ARG THR VAL LYS VAL TRP SER SEQRES 14 A 301 LEU GLY GLN SER THR PRO ASN PHE THR LEU THR THR GLY SEQRES 15 A 301 GLN GLU ARG GLY VAL ASN TYR VAL ASP TYR TYR PRO LEU SEQRES 16 A 301 PRO ASP LYS PRO TYR MET ILE THR ALA SER ASP ASP LEU SEQRES 17 A 301 THR ILE LYS ILE TRP ASP TYR GLN THR LYS SER CYS VAL SEQRES 18 A 301 ALA THR LEU GLU GLY HIS MET SER ASN VAL SER PHE ALA SEQRES 19 A 301 VAL PHE HIS PRO THR LEU PRO ILE ILE ILE SER GLY SER SEQRES 20 A 301 GLU ASP GLY THR LEU LYS ILE TRP ASN SER SER THR TYR SEQRES 21 A 301 LYS VAL GLU LYS THR LEU ASN VAL GLY LEU GLU ARG SER SEQRES 22 A 301 TRP CYS ILE ALA THR HIS PRO THR GLY ARG LYS ASN TYR SEQRES 23 A 301 ILE ALA SER GLY PHE ASP ASN GLY PHE THR VAL LEU SER SEQRES 24 A 301 LEU GLY SEQRES 1 B 7 PHE GLU ALA LYS LYS LEU VAL FORMUL 3 HOH *301(H2 O) HELIX 1 1 ALA A 65 LYS A 67 5 3 HELIX 2 2 ALA B -2 VAL B 2 1 5 SHEET 1 A 4 LYS A 6 ARG A 12 0 SHEET 2 A 4 GLY A 294 SER A 299 -1 O VAL A 297 N PHE A 9 SHEET 3 A 4 ILE A 287 PHE A 291 -1 N PHE A 291 O GLY A 294 SHEET 4 A 4 SER A 273 THR A 278 -1 N TRP A 274 O GLY A 290 SHEET 1 B 4 VAL A 16 PHE A 21 0 SHEET 2 B 4 TRP A 27 LEU A 32 -1 O LEU A 29 N ASP A 20 SHEET 3 B 4 ARG A 36 ASN A 41 -1 O ARG A 36 N LEU A 32 SHEET 4 B 4 VAL A 46 GLN A 52 -1 O VAL A 48 N ILE A 39 SHEET 1 C 4 VAL A 58 ILE A 64 0 SHEET 2 C 4 TRP A 69 SER A 74 -1 O ILE A 71 N LYS A 62 SHEET 3 C 4 ARG A 78 ASN A 83 -1 O ARG A 80 N VAL A 72 SHEET 4 C 4 LYS A 89 GLU A 94 -1 O VAL A 90 N VAL A 81 SHEET 1 D 4 ILE A 100 VAL A 105 0 SHEET 2 D 4 TYR A 111 SER A 116 -1 O LEU A 113 N ALA A 104 SHEET 3 D 4 VAL A 121 ASN A 125 -1 O TRP A 124 N VAL A 112 SHEET 4 D 4 LEU A 132 PHE A 136 -1 O PHE A 136 N VAL A 121 SHEET 1 E 4 VAL A 143 PHE A 148 0 SHEET 2 E 4 THR A 155 CYS A 160 -1 O ALA A 157 N ALA A 147 SHEET 3 E 4 THR A 164 SER A 169 -1 O TRP A 168 N PHE A 156 SHEET 4 E 4 PHE A 177 THR A 180 -1 O LEU A 179 N VAL A 165 SHEET 1 F 4 TYR A 189 TYR A 192 0 SHEET 2 F 4 TYR A 200 ALA A 204 -1 O ILE A 202 N ASP A 191 SHEET 3 F 4 THR A 209 ASP A 214 -1 O TRP A 213 N MET A 201 SHEET 4 F 4 CYS A 220 GLU A 225 -1 O LEU A 224 N ILE A 210 SHEET 1 G 4 VAL A 231 PHE A 236 0 SHEET 2 G 4 ILE A 242 SER A 247 -1 O ILE A 244 N VAL A 235 SHEET 3 G 4 LEU A 252 ASN A 256 -1 O TRP A 255 N ILE A 243 SHEET 4 G 4 VAL A 262 LEU A 266 -1 O GLU A 263 N ILE A 254 CRYST1 36.295 56.696 132.352 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007556 0.00000