HEADER LIGASE 12-FEB-13 4J75 TITLE CRYSTAL STRUCTURE OF A PARASITE TRNA SYNTHETASE, PRODUCT-BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHANYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 229-632; COMPND 5 SYNONYM: TRYPTOPHAN--TRNA LIGASE; COMPND 6 EC: 6.1.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF13_0205; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS AMINOACYL-TRNA SYNTHETASE, AARS, TRPRS, PARASITE, PROTEIN-SUBSTRATE KEYWDS 2 COMPLEX, ROSSMANN FOLD, TRANSLATION, NUCLEOTIDE BINDING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.KOH,J.E.KIM,C.L.M.J.VERLINDE,W.G.J.HOL REVDAT 5 20-SEP-23 4J75 1 REMARK SEQADV REVDAT 4 27-MAY-15 4J75 1 AUTHOR REVDAT 3 12-JUN-13 4J75 1 JRNL REVDAT 2 29-MAY-13 4J75 1 JRNL REVDAT 1 22-MAY-13 4J75 0 JRNL AUTH C.Y.KOH,J.E.KIM,A.J.NAPOLI,C.L.VERLINDE,E.FAN,F.S.BUCKNER, JRNL AUTH 2 W.C.VAN VOORHIS,W.G.HOL JRNL TITL CRYSTAL STRUCTURES OF PLASMODIUM FALCIPARUM CYTOSOLIC JRNL TITL 2 TRYPTOPHANYL-TRNA SYNTHETASE AND ITS POTENTIAL AS A TARGET JRNL TITL 3 FOR STRUCTURE-GUIDED DRUG DESIGN. JRNL REF MOL.BIOCHEM.PARASITOL. V. 189 26 2013 JRNL REFN ISSN 0166-6851 JRNL PMID 23665145 JRNL DOI 10.1016/J.MOLBIOPARA.2013.04.007 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 45312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2309 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3093 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6073 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.471 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6312 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5982 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8516 ; 1.165 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13812 ; 0.911 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 738 ; 5.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 305 ;36.034 ;24.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1135 ;14.430 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.391 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7044 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1512 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2971 ; 0.711 ; 1.907 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2966 ; 0.709 ; 1.906 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3702 ; 1.235 ; 2.855 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7640 11.5230 6.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.2172 REMARK 3 T33: 0.3621 T12: 0.0093 REMARK 3 T13: 0.0201 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 6.0486 L22: 9.8380 REMARK 3 L33: 0.5132 L12: 0.5263 REMARK 3 L13: -0.2985 L23: -2.2192 REMARK 3 S TENSOR REMARK 3 S11: -0.1514 S12: 0.4030 S13: 0.2955 REMARK 3 S21: -0.6379 S22: 0.3700 S23: 1.0137 REMARK 3 S31: 0.1288 S32: -0.1236 S33: -0.2185 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 281 A 485 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2090 3.9670 1.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0390 REMARK 3 T33: 0.0543 T12: -0.0049 REMARK 3 T13: -0.0074 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.4909 L22: 1.0577 REMARK 3 L33: 1.3875 L12: -0.3731 REMARK 3 L13: -0.7502 L23: 0.2876 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.0643 S13: 0.1111 REMARK 3 S21: 0.0083 S22: 0.0421 S23: 0.1790 REMARK 3 S31: -0.0865 S32: -0.1355 S33: -0.0147 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 486 A 632 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2860 27.0500 8.2980 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1764 REMARK 3 T33: 0.3606 T12: -0.0309 REMARK 3 T13: 0.0027 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.3147 L22: 6.8737 REMARK 3 L33: 1.3365 L12: -3.8077 REMARK 3 L13: 1.2974 L23: -1.4781 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: 0.0577 S13: 0.6326 REMARK 3 S21: 0.0273 S22: 0.0192 S23: -0.0142 REMARK 3 S31: -0.2600 S32: 0.0494 S33: 0.0822 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 244 B 281 REMARK 3 ORIGIN FOR THE GROUP (A): 58.2700 -21.2020 -24.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.3760 T22: 0.6994 REMARK 3 T33: 0.5071 T12: 0.1208 REMARK 3 T13: 0.1271 T23: -0.3282 REMARK 3 L TENSOR REMARK 3 L11: 0.6302 L22: 7.5630 REMARK 3 L33: 4.0157 L12: 1.1784 REMARK 3 L13: -0.5863 L23: 2.8930 REMARK 3 S TENSOR REMARK 3 S11: -0.2384 S12: 0.2624 S13: -0.1494 REMARK 3 S21: -1.1487 S22: 0.7868 S23: -0.7527 REMARK 3 S31: -0.1538 S32: 0.4722 S33: -0.5484 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 282 B 486 REMARK 3 ORIGIN FOR THE GROUP (A): 44.4850 -14.9360 -11.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0437 REMARK 3 T33: 0.0530 T12: -0.0083 REMARK 3 T13: 0.0199 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.5320 L22: 1.8183 REMARK 3 L33: 0.9026 L12: -0.4340 REMARK 3 L13: 0.0980 L23: -0.0667 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.1864 S13: -0.2883 REMARK 3 S21: -0.1762 S22: -0.0035 S23: -0.1376 REMARK 3 S31: 0.2356 S32: 0.0265 S33: 0.0011 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 487 B 632 REMARK 3 ORIGIN FOR THE GROUP (A): 47.7020 -37.3450 -17.8900 REMARK 3 T TENSOR REMARK 3 T11: 0.4262 T22: 0.3208 REMARK 3 T33: 0.4923 T12: 0.0066 REMARK 3 T13: -0.0623 T23: -0.0827 REMARK 3 L TENSOR REMARK 3 L11: 2.0456 L22: 4.8598 REMARK 3 L33: 3.2101 L12: 0.1620 REMARK 3 L13: 0.1802 L23: 1.5163 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.5289 S13: -0.7585 REMARK 3 S21: -0.8254 S22: 0.1171 S23: -0.1126 REMARK 3 S31: 0.4605 S32: -0.0493 S33: -0.1328 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4J75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX HF (OSMIC) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 4J76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE, 20% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 58.51650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 94.73650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.51650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 94.73650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 SER A 229 REMARK 465 LYS A 230 REMARK 465 ASP A 231 REMARK 465 VAL A 232 REMARK 465 THR A 233 REMARK 465 PRO A 234 REMARK 465 TRP A 235 REMARK 465 ASP A 236 REMARK 465 VAL A 237 REMARK 465 ASN A 238 REMARK 465 ILE A 239 REMARK 465 ASN A 240 REMARK 465 ASN A 241 REMARK 465 GLU A 242 REMARK 465 GLU A 243 REMARK 465 THR A 496 REMARK 465 LYS A 497 REMARK 465 LYS A 498 REMARK 465 LYS A 499 REMARK 465 LYS A 500 REMARK 465 ASP A 501 REMARK 465 ASP A 502 REMARK 465 ASN A 503 REMARK 465 GLY A 504 REMARK 465 LYS A 505 REMARK 465 SER A 506 REMARK 465 ASN A 507 REMARK 465 SER A 508 REMARK 465 THR A 509 REMARK 465 PHE A 510 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 SER B 229 REMARK 465 LYS B 230 REMARK 465 ASP B 231 REMARK 465 VAL B 232 REMARK 465 THR B 233 REMARK 465 PRO B 234 REMARK 465 TRP B 235 REMARK 465 ASP B 236 REMARK 465 VAL B 237 REMARK 465 ASN B 238 REMARK 465 ILE B 239 REMARK 465 ASN B 240 REMARK 465 ASN B 241 REMARK 465 GLU B 242 REMARK 465 GLU B 243 REMARK 465 THR B 496 REMARK 465 LYS B 497 REMARK 465 LYS B 498 REMARK 465 LYS B 499 REMARK 465 LYS B 500 REMARK 465 ASP B 501 REMARK 465 ASP B 502 REMARK 465 ASN B 503 REMARK 465 GLY B 504 REMARK 465 LYS B 505 REMARK 465 SER B 506 REMARK 465 ASN B 507 REMARK 465 SER B 508 REMARK 465 THR B 509 REMARK 465 PHE B 510 REMARK 465 LYS B 579 REMARK 465 LYS B 580 REMARK 465 GLY B 581 REMARK 465 GLU B 582 REMARK 465 MET B 583 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 441 -8.12 -145.64 REMARK 500 PHE B 441 -8.97 -145.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYM A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYM B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J75 RELATED DB: PDB DBREF 4J75 A 229 632 UNP Q8IDW3 Q8IDW3_PLAF7 229 632 DBREF 4J75 B 229 632 UNP Q8IDW3 Q8IDW3_PLAF7 229 632 SEQADV 4J75 GLY A -4 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 PRO A -3 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 GLY A -2 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 SER A -1 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 MET A 0 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 GLY B -4 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 PRO B -3 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 GLY B -2 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 SER B -1 UNP Q8IDW3 EXPRESSION TAG SEQADV 4J75 MET B 0 UNP Q8IDW3 EXPRESSION TAG SEQRES 1 A 409 GLY PRO GLY SER MET SER LYS ASP VAL THR PRO TRP ASP SEQRES 2 A 409 VAL ASN ILE ASN ASN GLU GLU GLY ILE ASN TYR ASN LYS SEQRES 3 A 409 LEU ILE LYS GLU PHE GLY CYS SER LYS ILE THR GLU ASN SEQRES 4 A 409 HIS ILE LYS ARG ILE GLU LYS LEU THR ASN SER LYS ALA SEQRES 5 A 409 HIS HIS PHE ILE ARG ARG GLY ILE PHE PHE SER HIS ARG SEQRES 6 A 409 ASP LEU ASP PHE LEU LEU ASN TYR TYR GLU GLN HIS LYS SEQRES 7 A 409 CYS PHE TYR ILE TYR THR GLY ARG GLY PRO SER SER LEU SEQRES 8 A 409 SER MET HIS LEU GLY HIS LEU ILE PRO PHE TYR PHE CYS SEQRES 9 A 409 LYS TYR LEU GLN GLU ALA PHE ASN VAL PRO LEU VAL ILE SEQRES 10 A 409 GLN LEU SER ASP ASP GLU LYS TYR LEU PHE ASN GLN ASN SEQRES 11 A 409 TYR SER LEU GLU TYR ILE ASN THR LEU THR ASN GLU ASN SEQRES 12 A 409 VAL LYS ASP ILE ILE SER VAL GLY LEU ASN PRO GLU LEU SEQRES 13 A 409 THR PHE ILE PHE LYS ASN THR GLU TYR ALA GLY TYR LEU SEQRES 14 A 409 TYR PRO THR VAL LEU SER ILE HIS LYS LYS THR THR LEU SEQRES 15 A 409 ASN GLN SER MET ASN VAL PHE GLY PHE ASN HIS SER ASP SEQRES 16 A 409 ASN ILE GLY LYS ILE SER TYR PRO SER PHE GLN ILE ALA SEQRES 17 A 409 PRO CYS PHE SER GLN CYS PHE PRO ASN PHE LEU GLY LYS SEQRES 18 A 409 ASN ILE PRO CYS LEU VAL PRO GLN GLY ILE ASP GLN ASP SEQRES 19 A 409 PRO TYR PHE ARG LEU SER ARG ASP ILE ALA VAL LYS MET SEQRES 20 A 409 ALA LEU HIS LYS PRO VAL VAL VAL HIS SER VAL PHE MET SEQRES 21 A 409 PRO GLY LEU GLN GLY VAL ASN SER LYS MET SER SER THR SEQRES 22 A 409 LYS LYS LYS LYS ASP ASP ASN GLY LYS SER ASN SER THR SEQRES 23 A 409 PHE ASP HIS ASN ASN SER VAL ILE PHE LEU THR ASP THR SEQRES 24 A 409 PRO GLU GLN ILE LYS ASN LYS ILE ASN LYS TYR ALA PHE SEQRES 25 A 409 SER GLY GLY GLY THR THR ILE GLN GLU HIS ARG GLU LYS SEQRES 26 A 409 GLY GLY ASN LEU ASP LYS ASP ILE SER TYR GLN TYR LEU SEQRES 27 A 409 ARG TYR LEU LEU GLU ASP ASP ASN LYS LEU ASN GLU ILE SEQRES 28 A 409 GLY GLU LYS TYR LYS LYS GLY GLU MET LEU SER GLY GLU SEQRES 29 A 409 ILE LYS LYS ILE LEU ILE ASP VAL LEU THR GLU LEU VAL SEQRES 30 A 409 LEU LYS HIS GLN GLU LYS LYS LYS SER LEU THR ASP GLU SEQRES 31 A 409 GLU ILE SER TYR PHE PHE ASP PRO ASN LYS PRO SER LEU SEQRES 32 A 409 GLN LYS PHE LYS ASN MET SEQRES 1 B 409 GLY PRO GLY SER MET SER LYS ASP VAL THR PRO TRP ASP SEQRES 2 B 409 VAL ASN ILE ASN ASN GLU GLU GLY ILE ASN TYR ASN LYS SEQRES 3 B 409 LEU ILE LYS GLU PHE GLY CYS SER LYS ILE THR GLU ASN SEQRES 4 B 409 HIS ILE LYS ARG ILE GLU LYS LEU THR ASN SER LYS ALA SEQRES 5 B 409 HIS HIS PHE ILE ARG ARG GLY ILE PHE PHE SER HIS ARG SEQRES 6 B 409 ASP LEU ASP PHE LEU LEU ASN TYR TYR GLU GLN HIS LYS SEQRES 7 B 409 CYS PHE TYR ILE TYR THR GLY ARG GLY PRO SER SER LEU SEQRES 8 B 409 SER MET HIS LEU GLY HIS LEU ILE PRO PHE TYR PHE CYS SEQRES 9 B 409 LYS TYR LEU GLN GLU ALA PHE ASN VAL PRO LEU VAL ILE SEQRES 10 B 409 GLN LEU SER ASP ASP GLU LYS TYR LEU PHE ASN GLN ASN SEQRES 11 B 409 TYR SER LEU GLU TYR ILE ASN THR LEU THR ASN GLU ASN SEQRES 12 B 409 VAL LYS ASP ILE ILE SER VAL GLY LEU ASN PRO GLU LEU SEQRES 13 B 409 THR PHE ILE PHE LYS ASN THR GLU TYR ALA GLY TYR LEU SEQRES 14 B 409 TYR PRO THR VAL LEU SER ILE HIS LYS LYS THR THR LEU SEQRES 15 B 409 ASN GLN SER MET ASN VAL PHE GLY PHE ASN HIS SER ASP SEQRES 16 B 409 ASN ILE GLY LYS ILE SER TYR PRO SER PHE GLN ILE ALA SEQRES 17 B 409 PRO CYS PHE SER GLN CYS PHE PRO ASN PHE LEU GLY LYS SEQRES 18 B 409 ASN ILE PRO CYS LEU VAL PRO GLN GLY ILE ASP GLN ASP SEQRES 19 B 409 PRO TYR PHE ARG LEU SER ARG ASP ILE ALA VAL LYS MET SEQRES 20 B 409 ALA LEU HIS LYS PRO VAL VAL VAL HIS SER VAL PHE MET SEQRES 21 B 409 PRO GLY LEU GLN GLY VAL ASN SER LYS MET SER SER THR SEQRES 22 B 409 LYS LYS LYS LYS ASP ASP ASN GLY LYS SER ASN SER THR SEQRES 23 B 409 PHE ASP HIS ASN ASN SER VAL ILE PHE LEU THR ASP THR SEQRES 24 B 409 PRO GLU GLN ILE LYS ASN LYS ILE ASN LYS TYR ALA PHE SEQRES 25 B 409 SER GLY GLY GLY THR THR ILE GLN GLU HIS ARG GLU LYS SEQRES 26 B 409 GLY GLY ASN LEU ASP LYS ASP ILE SER TYR GLN TYR LEU SEQRES 27 B 409 ARG TYR LEU LEU GLU ASP ASP ASN LYS LEU ASN GLU ILE SEQRES 28 B 409 GLY GLU LYS TYR LYS LYS GLY GLU MET LEU SER GLY GLU SEQRES 29 B 409 ILE LYS LYS ILE LEU ILE ASP VAL LEU THR GLU LEU VAL SEQRES 30 B 409 LEU LYS HIS GLN GLU LYS LYS LYS SER LEU THR ASP GLU SEQRES 31 B 409 GLU ILE SER TYR PHE PHE ASP PRO ASN LYS PRO SER LEU SEQRES 32 B 409 GLN LYS PHE LYS ASN MET HET TYM A 701 37 HET GOL A 702 6 HET GOL A 703 6 HET TYM B 701 37 HETNAM TYM TRYPTOPHANYL-5'AMP HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 TYM 2(C21 H24 N7 O8 P) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *213(H2 O) HELIX 1 1 ASN A 246 GLY A 255 1 10 HELIX 2 2 THR A 260 ASN A 272 1 13 HELIX 3 3 HIS A 276 ARG A 281 1 6 HELIX 4 4 ASP A 289 LYS A 301 1 13 HELIX 5 5 HIS A 317 ASN A 335 1 19 HELIX 6 6 SER A 343 ASN A 351 1 9 HELIX 7 7 SER A 355 SER A 372 1 18 HELIX 8 8 ASN A 376 GLU A 378 5 3 HELIX 9 9 ASN A 385 LYS A 402 1 18 HELIX 10 10 THR A 404 GLY A 413 1 10 HELIX 11 11 ASN A 419 ALA A 431 1 13 HELIX 12 12 PRO A 432 PHE A 438 5 7 HELIX 13 13 GLN A 456 MET A 470 1 15 HELIX 14 14 ASP A 511 VAL A 516 5 6 HELIX 15 15 THR A 522 ALA A 534 1 13 HELIX 16 16 THR A 541 GLY A 549 1 9 HELIX 17 17 ASP A 555 LEU A 565 1 11 HELIX 18 18 ASP A 567 LYS A 580 1 14 HELIX 19 19 LEU A 584 LEU A 610 1 27 HELIX 20 20 THR A 611 PHE A 619 1 9 HELIX 21 21 SER A 625 LYS A 630 5 6 HELIX 22 22 ASN B 246 GLY B 255 1 10 HELIX 23 23 THR B 260 ASN B 272 1 13 HELIX 24 24 HIS B 276 ARG B 281 1 6 HELIX 25 25 ASP B 289 LYS B 301 1 13 HELIX 26 26 HIS B 317 ASN B 335 1 19 HELIX 27 27 SER B 343 ASN B 351 1 9 HELIX 28 28 SER B 355 SER B 372 1 18 HELIX 29 29 ASN B 376 GLU B 378 5 3 HELIX 30 30 ASN B 385 LYS B 402 1 18 HELIX 31 31 THR B 404 GLY B 413 1 10 HELIX 32 32 ASN B 419 ALA B 431 1 13 HELIX 33 33 PRO B 432 PHE B 438 5 7 HELIX 34 34 GLN B 456 MET B 470 1 15 HELIX 35 35 HIS B 512 VAL B 516 5 5 HELIX 36 36 THR B 522 ALA B 534 1 13 HELIX 37 37 THR B 541 GLY B 549 1 9 HELIX 38 38 ASP B 555 LEU B 565 1 11 HELIX 39 39 ASP B 567 TYR B 578 1 12 HELIX 40 40 SER B 585 LEU B 610 1 26 HELIX 41 41 THR B 611 PHE B 619 1 9 HELIX 42 42 SER B 625 LYS B 630 5 6 SHEET 1 A 7 SER A 257 LYS A 258 0 SHEET 2 A 7 PHE A 284 ARG A 288 -1 O HIS A 287 N SER A 257 SHEET 3 A 7 VAL A 476 SER A 480 -1 O HIS A 479 N SER A 286 SHEET 4 A 7 CYS A 448 GLY A 453 1 N VAL A 450 O VAL A 476 SHEET 5 A 7 TYR A 304 ARG A 309 1 N TYR A 304 O LEU A 449 SHEET 6 A 7 LEU A 338 LEU A 342 1 O VAL A 339 N ILE A 305 SHEET 7 A 7 THR A 380 LYS A 384 1 O PHE A 381 N LEU A 338 SHEET 1 B 7 SER B 257 LYS B 258 0 SHEET 2 B 7 PHE B 284 ARG B 288 -1 O HIS B 287 N SER B 257 SHEET 3 B 7 VAL B 476 SER B 480 -1 O HIS B 479 N SER B 286 SHEET 4 B 7 CYS B 448 GLY B 453 1 N VAL B 450 O VAL B 476 SHEET 5 B 7 TYR B 304 ARG B 309 1 N TYR B 304 O LEU B 449 SHEET 6 B 7 LEU B 338 LEU B 342 1 O VAL B 339 N ILE B 305 SHEET 7 B 7 THR B 380 LYS B 384 1 O PHE B 381 N LEU B 338 SITE 1 AC1 28 TYR A 306 THR A 307 GLY A 308 ARG A 309 SITE 2 AC1 28 GLY A 310 GLY A 319 PRO A 323 GLN A 341 SITE 3 AC1 28 SER A 343 GLU A 346 LYS A 347 TYR A 425 SITE 4 AC1 28 GLN A 429 GLY A 453 ASP A 455 GLN A 456 SITE 5 AC1 28 PHE A 460 VAL A 481 PHE A 482 MET A 483 SITE 6 AC1 28 LYS A 492 MET A 493 HOH A 801 HOH A 848 SITE 7 AC1 28 HOH A 860 HOH A 867 HOH A 869 HOH A 870 SITE 1 AC2 3 ASN A 364 LYS A 384 GLU A 387 SITE 1 AC3 5 HIS A 276 HIS A 277 TYR A 325 LEU A 564 SITE 2 AC3 5 GLU A 566 SITE 1 AC4 25 TYR B 306 THR B 307 GLY B 308 ARG B 309 SITE 2 AC4 25 GLY B 310 GLY B 319 HIS B 320 PRO B 323 SITE 3 AC4 25 GLN B 341 SER B 343 GLU B 346 LYS B 347 SITE 4 AC4 25 GLN B 429 GLY B 453 ASP B 455 GLN B 456 SITE 5 AC4 25 PHE B 460 VAL B 481 PHE B 482 MET B 483 SITE 6 AC4 25 LYS B 492 MET B 493 HOH B 823 HOH B 844 SITE 7 AC4 25 HOH B 876 CRYST1 117.033 189.473 51.450 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019436 0.00000