HEADER OXIDOREDUCTASE 19-FEB-13 4JB1 TITLE CRYSTAL STRUCTURE OF P. AERUGINOSA MURB IN COMPLEX WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-N-ACETYLMURAMATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.158; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: MURB, PA2977; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.CHEN,B.LOHKAMP,R.SCHNELL,J.LESCAR,G.SCHNEIDER REVDAT 2 20-SEP-23 4JB1 1 REMARK SEQADV REVDAT 1 17-JUL-13 4JB1 0 JRNL AUTH M.W.CHEN,B.LOHKAMP,R.SCHNELL,J.LESCAR,G.SCHNEIDER JRNL TITL SUBSTRATE CHANNEL FLEXIBILITY IN PSEUDOMONAS AERUGINOSA MURB JRNL TITL 2 ACCOMMODATES TWO DISTINCT SUBSTRATES. JRNL REF PLOS ONE V. 8 66936 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23805286 JRNL DOI 10.1371/JOURNAL.PONE.0066936 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1325 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1840 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29000 REMARK 3 B22 (A**2) : 1.29000 REMARK 3 B33 (A**2) : -4.18000 REMARK 3 B12 (A**2) : 1.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.345 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2937 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2826 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3998 ; 2.125 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6468 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 7.393 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;34.207 ;22.621 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;16.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.079 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3314 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1387 ; 1.621 ; 1.911 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1386 ; 1.621 ; 1.910 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1741 ; 2.455 ; 2.858 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7860 -20.8824 -3.4096 REMARK 3 T TENSOR REMARK 3 T11: 0.6339 T22: 0.9286 REMARK 3 T33: 0.2882 T12: 0.3755 REMARK 3 T13: 0.2367 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.9386 L22: 11.8572 REMARK 3 L33: 0.2778 L12: 3.0533 REMARK 3 L13: 0.2757 L23: 1.3652 REMARK 3 S TENSOR REMARK 3 S11: 0.5647 S12: -0.2708 S13: 0.5673 REMARK 3 S21: 0.4150 S22: -0.6355 S23: 1.1098 REMARK 3 S31: -0.1540 S32: -0.3879 S33: 0.0708 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4429 -18.6394 -17.0689 REMARK 3 T TENSOR REMARK 3 T11: 0.2497 T22: 0.1394 REMARK 3 T33: 0.0960 T12: 0.0748 REMARK 3 T13: 0.0656 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.5548 L22: 0.6567 REMARK 3 L33: 3.6316 L12: 0.5821 REMARK 3 L13: -0.4993 L23: -0.3173 REMARK 3 S TENSOR REMARK 3 S11: 0.2176 S12: -0.0216 S13: 0.0660 REMARK 3 S21: 0.1839 S22: 0.0039 S23: 0.0492 REMARK 3 S31: -0.7997 S32: -0.4001 S33: -0.2216 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9731 -20.7977 -11.9066 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.2379 REMARK 3 T33: 0.1181 T12: -0.1285 REMARK 3 T13: -0.0299 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.2650 L22: 8.4169 REMARK 3 L33: 3.6066 L12: -0.9987 REMARK 3 L13: 0.0719 L23: 2.4339 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.4372 S13: 0.0022 REMARK 3 S21: 0.5872 S22: 0.2510 S23: -0.0783 REMARK 3 S31: -0.4562 S32: 0.3894 S33: -0.1646 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4222 -28.3533 -34.7188 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.1063 REMARK 3 T33: 0.0794 T12: -0.0381 REMARK 3 T13: 0.0117 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.7449 L22: 1.1501 REMARK 3 L33: 3.8031 L12: 0.7614 REMARK 3 L13: 0.7739 L23: -0.1341 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.0031 S13: -0.0952 REMARK 3 S21: -0.0312 S22: 0.0685 S23: -0.0664 REMARK 3 S31: 0.0642 S32: -0.2795 S33: -0.0957 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1060 -35.0040 -24.1817 REMARK 3 T TENSOR REMARK 3 T11: 0.3061 T22: 0.3818 REMARK 3 T33: 0.1985 T12: -0.1161 REMARK 3 T13: -0.0108 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.9680 L22: 0.5555 REMARK 3 L33: 4.7759 L12: 1.2261 REMARK 3 L13: -1.3880 L23: -0.1387 REMARK 3 S TENSOR REMARK 3 S11: 0.1621 S12: 0.0825 S13: 0.1573 REMARK 3 S21: 0.0609 S22: -0.0360 S23: 0.0673 REMARK 3 S31: 0.1958 S32: -1.0059 S33: -0.1261 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 43.7192 -53.3901 -16.5015 REMARK 3 T TENSOR REMARK 3 T11: 0.4905 T22: 0.3442 REMARK 3 T33: 0.0849 T12: 0.3760 REMARK 3 T13: 0.1272 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 12.7370 L22: 20.2813 REMARK 3 L33: 7.8672 L12: 5.0340 REMARK 3 L13: 1.5952 L23: -3.4794 REMARK 3 S TENSOR REMARK 3 S11: -0.2543 S12: 0.1493 S13: -0.3696 REMARK 3 S21: 0.2807 S22: 0.0877 S23: -0.3669 REMARK 3 S31: 1.3904 S32: 1.3803 S33: 0.1666 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6244 -44.9432 -11.2445 REMARK 3 T TENSOR REMARK 3 T11: 0.2186 T22: 0.1342 REMARK 3 T33: 0.0578 T12: -0.1315 REMARK 3 T13: -0.0156 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.5303 L22: 1.0715 REMARK 3 L33: 2.4418 L12: 0.4565 REMARK 3 L13: -1.1358 L23: -0.7877 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.0370 S13: -0.2763 REMARK 3 S21: -0.0642 S22: -0.0010 S23: -0.0189 REMARK 3 S31: 0.6047 S32: -0.2238 S33: 0.0609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26203 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 76.825 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2MBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM POTASSIUM PHOSPHATE, 20% V/V REMARK 280 GLYCEROL, 16% W/V PEG 8000 AND 2 MM TRIS-BUFFERED NADP+ SODIUM REMARK 280 SALT, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.40667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.81333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.11000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.51667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.70333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GOL A 406 O HOH A 654 1.81 REMARK 500 OE2 GLU A 190 O HOH A 501 1.81 REMARK 500 O HOH A 611 O HOH A 626 1.94 REMARK 500 OG SER A 73 O HOH A 617 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 31 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 189 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 314 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 325 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 -177.90 -178.36 REMARK 500 ALA A 72 21.21 -147.43 REMARK 500 ALA A 83 -87.07 78.48 REMARK 500 ASP A 150 -8.36 -145.30 REMARK 500 GLU A 173 69.34 -106.72 REMARK 500 ASP A 247 156.95 -44.02 REMARK 500 PHE A 287 139.25 -37.92 REMARK 500 ASP A 289 111.68 -163.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JAY RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A DIFFERENT CRYSTAL FORM. DBREF 4JB1 A 1 339 UNP Q9HZM7 MURB_PSEAE 1 339 SEQADV 4JB1 SER A 0 UNP Q9HZM7 EXPRESSION TAG SEQRES 1 A 340 SER MET SER LEU GLU LEU GLN GLU HIS CYS SER LEU LYS SEQRES 2 A 340 PRO TYR ASN THR PHE GLY ILE ASP VAL ARG ALA ARG LEU SEQRES 3 A 340 LEU ALA HIS ALA ARG ASP GLU ALA ASP VAL ARG GLU ALA SEQRES 4 A 340 LEU ALA LEU ALA ARG GLU ARG GLY LEU PRO LEU LEU VAL SEQRES 5 A 340 ILE GLY GLY GLY SER ASN LEU LEU LEU THR ARG ASP VAL SEQRES 6 A 340 GLU ALA LEU VAL LEU ARG MET ALA SER GLN GLY ARG ARG SEQRES 7 A 340 ILE VAL SER ASP ALA ALA ASP SER VAL LEU VAL GLU ALA SEQRES 8 A 340 GLU ALA GLY GLU ALA TRP ASP PRO PHE VAL GLN TRP SER SEQRES 9 A 340 LEU GLU ARG GLY LEU ALA GLY LEU GLU ASN LEU SER LEU SEQRES 10 A 340 ILE PRO GLY THR VAL GLY ALA ALA PRO MET GLN ASN ILE SEQRES 11 A 340 GLY ALA TYR GLY VAL GLU LEU LYS ASP VAL PHE ASP SER SEQRES 12 A 340 LEU THR ALA LEU ASP ARG GLN ASP GLY THR LEU ARG GLU SEQRES 13 A 340 PHE ASP ARG GLN ALA CYS ARG PHE GLY TYR ARG ASP SER SEQRES 14 A 340 LEU PHE LYS GLN GLU PRO ASP ARG TRP LEU ILE LEU ARG SEQRES 15 A 340 VAL ARG LEU ARG LEU THR ARG ARG GLU ARG LEU HIS LEU SEQRES 16 A 340 ASP TYR GLY PRO VAL ARG GLN ARG LEU GLU GLU GLU GLY SEQRES 17 A 340 ILE ALA SER PRO THR ALA ARG ASP VAL SER ARG VAL ILE SEQRES 18 A 340 CYS ALA ILE ARG ARG GLU LYS LEU PRO ASP PRO ALA VAL SEQRES 19 A 340 LEU GLY ASN ALA GLY SER PHE PHE LYS ASN PRO LEU VAL SEQRES 20 A 340 ASP ALA THR GLN ALA GLU ARG LEU ARG GLN ALA PHE PRO SEQRES 21 A 340 ASP LEU VAL GLY TYR PRO GLN ALA ASP GLY ARG LEU LYS SEQRES 22 A 340 LEU ALA ALA GLY TRP LEU ILE ASP LYS GLY GLY TRP LYS SEQRES 23 A 340 GLY PHE ARG ASP GLY PRO VAL GLY VAL HIS ALA GLN GLN SEQRES 24 A 340 ALA LEU VAL LEU VAL ASN HIS GLY GLY ALA THR GLY ALA SEQRES 25 A 340 GLN VAL ARG ALA LEU ALA GLU ARG ILE GLN GLU ASP VAL SEQRES 26 A 340 ARG ARG ARG PHE GLY VAL GLU LEU GLU PRO GLU PRO ASN SEQRES 27 A 340 LEU TYR HET FAD A 401 53 HET NAP A 402 48 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 12 HET GOL A 407 6 HET GOL A 408 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 GOL 6(C3 H8 O3) FORMUL 10 HOH *161(H2 O) HELIX 1 1 LYS A 12 ASN A 15 5 4 HELIX 2 2 ASP A 31 ARG A 45 1 15 HELIX 3 3 ALA A 95 ARG A 106 1 12 HELIX 4 4 LEU A 111 SER A 115 5 5 HELIX 5 5 GLN A 159 ARG A 162 5 4 HELIX 6 6 SER A 168 GLU A 173 1 6 HELIX 7 7 TYR A 196 GLU A 206 1 11 HELIX 8 8 THR A 212 LEU A 228 1 17 HELIX 9 9 ASP A 247 PHE A 258 1 12 HELIX 10 10 ALA A 274 GLY A 282 1 9 HELIX 11 11 THR A 309 GLY A 329 1 21 SHEET 1 A 4 GLN A 6 SER A 10 0 SHEET 2 A 4 ARG A 22 ALA A 29 -1 O LEU A 26 N GLN A 6 SHEET 3 A 4 VAL A 64 MET A 71 1 O VAL A 64 N ARG A 22 SHEET 4 A 4 LEU A 49 ILE A 52 1 N ILE A 52 O MET A 71 SHEET 1 B 2 LEU A 58 LEU A 59 0 SHEET 2 B 2 ASN A 337 LEU A 338 1 O ASN A 337 N LEU A 59 SHEET 1 C 5 ARG A 76 ASP A 81 0 SHEET 2 C 5 SER A 85 GLU A 91 -1 O LEU A 87 N VAL A 79 SHEET 3 C 5 TRP A 177 THR A 187 -1 O LEU A 186 N VAL A 86 SHEET 4 C 5 PHE A 140 ASP A 147 -1 N LEU A 146 O LEU A 178 SHEET 5 C 5 LEU A 153 ASP A 157 -1 O ARG A 154 N ALA A 145 SHEET 1 D 2 GLY A 130 ALA A 131 0 SHEET 2 D 2 VAL A 134 GLU A 135 -1 O VAL A 134 N ALA A 131 SHEET 1 E 3 LEU A 245 VAL A 246 0 SHEET 2 E 3 LEU A 271 LEU A 273 -1 O LEU A 271 N VAL A 246 SHEET 3 E 3 GLY A 263 PRO A 265 -1 N TYR A 264 O LYS A 272 SHEET 1 F 3 ARG A 288 ASP A 289 0 SHEET 2 F 3 VAL A 292 VAL A 294 -1 O VAL A 292 N ASP A 289 SHEET 3 F 3 LEU A 302 ASN A 304 -1 O VAL A 303 N GLY A 293 SITE 1 AC1 30 VAL A 51 GLY A 53 GLY A 54 GLY A 55 SITE 2 AC1 30 SER A 56 ASN A 57 LEU A 58 ILE A 117 SITE 3 AC1 30 PRO A 118 GLY A 119 THR A 120 ALA A 123 SITE 4 AC1 30 MET A 126 GLN A 127 ILE A 129 GLY A 130 SITE 5 AC1 30 ARG A 166 TRP A 177 ILE A 179 ARG A 224 SITE 6 AC1 30 ALA A 237 GLY A 238 ASN A 337 TYR A 339 SITE 7 AC1 30 NAP A 402 HOH A 503 HOH A 514 HOH A 656 SITE 8 AC1 30 HOH A 660 HOH A 661 SITE 1 AC2 25 ALA A 131 TYR A 132 ARG A 166 ASP A 195 SITE 2 AC2 25 TYR A 196 ARG A 224 LYS A 227 LEU A 228 SITE 3 AC2 25 SER A 239 ASN A 243 TYR A 264 LYS A 272 SITE 4 AC2 25 GLU A 335 FAD A 401 GOL A 407 HOH A 504 SITE 5 AC2 25 HOH A 509 HOH A 528 HOH A 530 HOH A 563 SITE 6 AC2 25 HOH A 602 HOH A 615 HOH A 616 HOH A 633 SITE 7 AC2 25 HOH A 652 SITE 1 AC3 6 GLY A 269 GLY A 282 GLY A 283 TRP A 284 SITE 2 AC3 6 ASP A 323 ARG A 327 SITE 1 AC4 10 GLY A 207 ILE A 208 ALA A 209 GLN A 312 SITE 2 AC4 10 ALA A 315 LEU A 316 ARG A 319 HOH A 579 SITE 3 AC4 10 HOH A 628 HOH A 645 SITE 1 AC5 8 GLY A 110 VAL A 134 ASP A 138 VAL A 139 SITE 2 AC5 8 GLU A 190 HIS A 193 HOH A 582 HOH A 614 SITE 1 AC6 8 LEU A 116 ARG A 225 LEU A 228 PRO A 229 SITE 2 AC6 8 ASP A 230 HOH A 527 HOH A 654 HOH A 655 SITE 1 AC7 8 ALA A 131 TYR A 132 GLY A 133 VAL A 134 SITE 2 AC7 8 GLU A 135 ARG A 166 TYR A 196 NAP A 402 SITE 1 AC8 7 SER A 80 ASP A 81 ARG A 314 GLU A 318 SITE 2 AC8 7 GLN A 321 PRO A 334 LEU A 338 CRYST1 88.710 88.710 100.220 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011273 0.006508 0.000000 0.00000 SCALE2 0.000000 0.013017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009978 0.00000