HEADER DNA BINDING PROTEIN/DNA 19-FEB-13 4JBK TITLE MOLECULAR BASIS FOR ABROGATION OF ACTIVATION OF PRO-INFLAMMATORY TITLE 2 CYTOKINES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-ACTIVABLE PROTEIN 202; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: HINA DOMAIN, UNP RESIDUES 46-242; COMPND 5 SYNONYM: IFI-202, INTERFERON-INDUCIBLE PROTEIN P202, LUPUS COMPND 6 SUSCEPTIBILITY PROTEIN P202; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(P*GP*GP*AP*AP*TP*TP*AP*TP*AP*AP*TP*TP*CP*C)-3'); COMPND 10 CHAIN: E, F, G, H; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IFI202A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS OB FOLD, DNA, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.RU,X.NI,C.CROWLEY,L.ZHAO,W.DING,L.-W.HUNG,N.SHAW,G.CHENG,Z.-J.LIU REVDAT 2 08-NOV-23 4JBK 1 SEQADV REVDAT 1 26-JUN-13 4JBK 0 JRNL AUTH H.RU,X.NI,L.ZHAO,C.CROWLEY,W.DING,L.-W.HUNG,N.SHAW,G.CHENG, JRNL AUTH 2 Z.-J.LIU JRNL TITL STRUCTURAL BASIS FOR TERMINATION OF AIM2-MEDIATED SIGNALING JRNL TITL 2 BY P202 JRNL REF CELL RES. V. 23 855 2013 JRNL REFN ISSN 1001-0602 JRNL PMID 23567559 JRNL DOI 10.1038/CR.2013.52 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 21825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1794 - 7.1343 0.99 1441 152 0.2085 0.1924 REMARK 3 2 7.1343 - 5.6658 1.00 1455 137 0.2140 0.2362 REMARK 3 3 5.6658 - 4.9505 1.00 1430 154 0.1951 0.2125 REMARK 3 4 4.9505 - 4.4982 1.00 1416 143 0.1772 0.1962 REMARK 3 5 4.4982 - 4.1760 1.00 1440 142 0.1782 0.2476 REMARK 3 6 4.1760 - 3.9299 1.00 1429 139 0.2137 0.2418 REMARK 3 7 3.9299 - 3.7332 1.00 1442 146 0.2223 0.2950 REMARK 3 8 3.7332 - 3.5708 0.99 1410 146 0.2302 0.2836 REMARK 3 9 3.5708 - 3.4333 1.00 1414 127 0.2401 0.2762 REMARK 3 10 3.4333 - 3.3149 0.99 1408 149 0.2522 0.3297 REMARK 3 11 3.3149 - 3.2113 0.98 1374 150 0.2723 0.3130 REMARK 3 12 3.2113 - 3.1195 0.99 1412 134 0.2753 0.3732 REMARK 3 13 3.1195 - 3.0374 1.00 1445 134 0.2991 0.3550 REMARK 3 14 3.0374 - 2.9633 0.94 1319 137 0.3445 0.3876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7482 REMARK 3 ANGLE : 1.315 10279 REMARK 3 CHIRALITY : 0.088 1154 REMARK 3 PLANARITY : 0.005 1096 REMARK 3 DIHEDRAL : 18.526 2909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 40.4911 11.4431 70.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.5107 T22: 0.6014 REMARK 3 T33: 0.4829 T12: 0.0264 REMARK 3 T13: 0.0080 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3415 L22: 0.2265 REMARK 3 L33: 0.1946 L12: 0.0780 REMARK 3 L13: -0.2681 L23: -0.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: -0.0953 S13: 0.0444 REMARK 3 S21: -0.0263 S22: 0.0446 S23: -0.0508 REMARK 3 S31: 0.0910 S32: 0.1693 S33: 0.0430 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.963 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4JBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 0.1M TRIS-HCL, REMARK 280 20%(W/V) POLYETHYLENE GLYCOL 3000, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.15200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.15200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR STATES THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.07076 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 183.77908 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 159.49138 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.88954 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 TYR A 167 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 GLY A 170 REMARK 465 ASP A 171 REMARK 465 MET B 2 REMARK 465 GLU B 161 REMARK 465 GLN B 162 REMARK 465 HIS B 163 REMARK 465 ASN B 164 REMARK 465 ILE B 165 REMARK 465 ASN B 166 REMARK 465 TYR B 167 REMARK 465 MET C 2 REMARK 465 GLN C 162 REMARK 465 HIS C 163 REMARK 465 ASN C 164 REMARK 465 ILE C 165 REMARK 465 ASN C 166 REMARK 465 TYR C 167 REMARK 465 GLU C 168 REMARK 465 LYS C 169 REMARK 465 GLY C 170 REMARK 465 MET D 2 REMARK 465 HIS D 163 REMARK 465 TYR D 167 REMARK 465 GLU D 168 REMARK 465 LYS D 169 REMARK 465 GLY D 170 REMARK 465 ASP D 171 REMARK 465 LYS D 172 REMARK 465 LEU D 173 REMARK 465 LYS D 182 REMARK 465 GLY D 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS D 33 OD1 ASN D 193 2.08 REMARK 500 OD1 ASP A 149 N ASP A 152 2.09 REMARK 500 OG SER C 73 OG1 THR C 89 2.10 REMARK 500 O GLU D 62 OG1 THR D 65 2.14 REMARK 500 NZ LYS B 137 O3' DT G 8 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT G 8 O3' DT G 8 C3' -0.059 REMARK 500 DA G 9 O3' DA G 9 C3' 0.103 REMARK 500 DA G 10 C5' DA G 10 C4' 0.064 REMARK 500 DA G 10 O3' DA G 10 C3' -0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 95 C - N - CD ANGL. DEV. = 13.2 DEGREES REMARK 500 DT E 5 O3' - P - OP2 ANGL. DEV. = -17.5 DEGREES REMARK 500 DT E 5 O3' - P - OP1 ANGL. DEV. = -23.6 DEGREES REMARK 500 DT E 5 OP1 - P - OP2 ANGL. DEV. = 10.2 DEGREES REMARK 500 DT E 8 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT F 5 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC F 13 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA G 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT G 8 O4' - C4' - C3' ANGL. DEV. = -4.6 DEGREES REMARK 500 DT G 8 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DA G 9 O5' - C5' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 DA G 9 O4' - C4' - C3' ANGL. DEV. = 4.5 DEGREES REMARK 500 DA G 9 C4' - C3' - C2' ANGL. DEV. = -8.9 DEGREES REMARK 500 DA G 9 C3' - C2' - C1' ANGL. DEV. = 7.6 DEGREES REMARK 500 DA G 9 O4' - C1' - C2' ANGL. DEV. = -8.0 DEGREES REMARK 500 DA G 10 O5' - P - OP2 ANGL. DEV. = 13.2 DEGREES REMARK 500 DA G 10 O5' - C5' - C4' ANGL. DEV. = 30.9 DEGREES REMARK 500 DA G 10 P - O5' - C5' ANGL. DEV. = 20.2 DEGREES REMARK 500 DA G 10 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DA G 10 C5' - C4' - C3' ANGL. DEV. = -11.2 DEGREES REMARK 500 DA G 10 C5' - C4' - O4' ANGL. DEV. = 7.7 DEGREES REMARK 500 DA G 10 C4' - C3' - C2' ANGL. DEV. = 5.7 DEGREES REMARK 500 DA G 10 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA G 10 C4 - C5 - C6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA G 10 C5 - C6 - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA G 10 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA G 10 C8 - N9 - C4 ANGL. DEV. = -3.0 DEGREES REMARK 500 DT G 12 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC G 13 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG H 1 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT H 8 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC H 13 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 149 -156.79 -129.28 REMARK 500 LYS B 182 -168.97 -116.62 REMARK 500 ASN C 7 -0.55 61.92 REMARK 500 ASP C 159 51.32 -112.44 REMARK 500 LYS C 182 -86.47 -109.67 REMARK 500 MET D 98 65.30 -69.10 REMARK 500 PHE D 99 -174.36 -66.58 REMARK 500 ASP D 159 51.05 -111.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JBJ RELATED DB: PDB REMARK 900 UNLIGANDED P202A REMARK 900 RELATED ID: 4JBM RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUECE WAS CAUSED BY STRAIN AKR. DBREF 4JBK A 3 199 UNP Q9R002 IFI2_MOUSE 46 242 DBREF 4JBK B 3 199 UNP Q9R002 IFI2_MOUSE 46 242 DBREF 4JBK C 3 199 UNP Q9R002 IFI2_MOUSE 46 242 DBREF 4JBK D 3 199 UNP Q9R002 IFI2_MOUSE 46 242 DBREF 4JBK E 1 14 PDB 4JBK 4JBK 1 14 DBREF 4JBK F 1 14 PDB 4JBK 4JBK 1 14 DBREF 4JBK G 1 14 PDB 4JBK 4JBK 1 14 DBREF 4JBK H 1 14 PDB 4JBK 4JBK 1 14 SEQADV 4JBK MET A 2 UNP Q9R002 EXPRESSION TAG SEQADV 4JBK MET A 98 UNP Q9R002 ILE 141 SEE REMARK 999 SEQADV 4JBK PHE A 99 UNP Q9R002 ILE 142 SEE REMARK 999 SEQADV 4JBK GLU A 161 UNP Q9R002 LYS 204 SEE REMARK 999 SEQADV 4JBK MET B 2 UNP Q9R002 EXPRESSION TAG SEQADV 4JBK MET B 98 UNP Q9R002 ILE 141 SEE REMARK 999 SEQADV 4JBK PHE B 99 UNP Q9R002 ILE 142 SEE REMARK 999 SEQADV 4JBK GLU B 161 UNP Q9R002 LYS 204 SEE REMARK 999 SEQADV 4JBK MET C 2 UNP Q9R002 EXPRESSION TAG SEQADV 4JBK MET C 98 UNP Q9R002 ILE 141 SEE REMARK 999 SEQADV 4JBK PHE C 99 UNP Q9R002 ILE 142 SEE REMARK 999 SEQADV 4JBK GLU C 161 UNP Q9R002 LYS 204 SEE REMARK 999 SEQADV 4JBK MET D 2 UNP Q9R002 EXPRESSION TAG SEQADV 4JBK MET D 98 UNP Q9R002 ILE 141 SEE REMARK 999 SEQADV 4JBK PHE D 99 UNP Q9R002 ILE 142 SEE REMARK 999 SEQADV 4JBK GLU D 161 UNP Q9R002 LYS 204 SEE REMARK 999 SEQRES 1 A 198 MET THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 A 198 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 A 198 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 A 198 HIS ALA THR VAL ALA THR GLU SER GLN TYR TYR ARG VAL SEQRES 5 A 198 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 A 198 ASN LYS PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 A 198 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 A 198 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 A 198 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 A 198 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 A 198 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 A 198 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 A 198 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 A 198 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 A 198 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 A 198 ILE LYS GLY SEQRES 1 B 198 MET THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 B 198 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 B 198 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 B 198 HIS ALA THR VAL ALA THR GLU SER GLN TYR TYR ARG VAL SEQRES 5 B 198 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 B 198 ASN LYS PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 B 198 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 B 198 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 B 198 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 B 198 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 B 198 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 B 198 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 B 198 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 B 198 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 B 198 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 B 198 ILE LYS GLY SEQRES 1 C 198 MET THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 C 198 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 C 198 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 C 198 HIS ALA THR VAL ALA THR GLU SER GLN TYR TYR ARG VAL SEQRES 5 C 198 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 C 198 ASN LYS PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 C 198 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 C 198 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 C 198 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 C 198 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 C 198 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 C 198 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 C 198 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 C 198 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 C 198 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 C 198 ILE LYS GLY SEQRES 1 D 198 MET THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 D 198 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 D 198 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 D 198 HIS ALA THR VAL ALA THR GLU SER GLN TYR TYR ARG VAL SEQRES 5 D 198 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 D 198 ASN LYS PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 D 198 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 D 198 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 D 198 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 D 198 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 D 198 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 D 198 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 D 198 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 D 198 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 D 198 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 D 198 ILE LYS GLY SEQRES 1 E 14 DG DG DA DA DT DT DA DT DA DA DT DT DC SEQRES 2 E 14 DC SEQRES 1 F 14 DG DG DA DA DT DT DA DT DA DA DT DT DC SEQRES 2 F 14 DC SEQRES 1 G 14 DG DG DA DA DT DT DA DT DA DA DT DT DC SEQRES 2 G 14 DC SEQRES 1 H 14 DG DG DA DA DT DT DA DT DA DA DT DT DC SEQRES 2 H 14 DC HELIX 1 1 ASN A 57 LYS A 61 5 5 HELIX 2 2 PRO A 102 GLU A 111 1 10 HELIX 3 3 LYS A 114 LYS A 119 1 6 HELIX 4 4 ASN B 57 LYS B 61 5 5 HELIX 5 5 ALA B 94 MET B 98 5 5 HELIX 6 6 PRO B 102 GLU B 111 1 10 HELIX 7 7 LYS B 114 LYS B 119 1 6 HELIX 8 8 ASN C 57 LYS C 61 5 5 HELIX 9 9 PRO C 102 GLU C 111 1 10 HELIX 10 10 LYS C 114 LYS C 119 1 6 HELIX 11 11 ASN D 57 LYS D 61 5 5 HELIX 12 12 PRO D 102 GLU D 111 1 10 HELIX 13 13 LYS D 114 LYS D 119 1 6 SHEET 1 A 8 VAL A 13 HIS A 15 0 SHEET 2 A 8 TYR A 75 SER A 78 -1 O TYR A 75 N HIS A 15 SHEET 3 A 8 ILE A 81 ILE A 84 -1 O ILE A 81 N SER A 78 SHEET 4 A 8 GLN A 49 VAL A 55 1 N LYS A 54 O LEU A 82 SHEET 5 A 8 PHE A 40 THR A 46 -1 N THR A 46 O GLN A 49 SHEET 6 A 8 MET A 19 ALA A 26 -1 N LEU A 24 O THR A 43 SHEET 7 A 8 PHE A 69 SER A 73 -1 O ILE A 72 N MET A 19 SHEET 8 A 8 THR A 89 GLU A 92 -1 O SER A 91 N THR A 71 SHEET 1 B 7 PHE A 196 LYS A 198 0 SHEET 2 B 7 LEU A 173 LYS A 182 -1 N GLN A 174 O LYS A 198 SHEET 3 B 7 PRO A 187 HIS A 190 -1 O HIS A 190 N HIS A 179 SHEET 4 B 7 ASN A 153 TRP A 158 1 N VAL A 157 O LEU A 189 SHEET 5 B 7 ILE A 143 LYS A 148 -1 N ILE A 147 O ILE A 154 SHEET 6 B 7 LEU A 126 VAL A 138 -1 N ALA A 132 O LYS A 148 SHEET 7 B 7 LEU A 173 LYS A 182 -1 O LEU A 175 N GLY A 129 SHEET 1 C 8 VAL B 13 HIS B 15 0 SHEET 2 C 8 TYR B 75 SER B 78 -1 O TYR B 75 N HIS B 15 SHEET 3 C 8 ILE B 81 ILE B 84 -1 O ILE B 81 N SER B 78 SHEET 4 C 8 TYR B 50 VAL B 55 1 N ARG B 52 O LEU B 82 SHEET 5 C 8 PHE B 40 ALA B 45 -1 N ALA B 42 O VAL B 53 SHEET 6 C 8 MET B 19 ALA B 26 -1 N LEU B 24 O THR B 43 SHEET 7 C 8 PHE B 69 SER B 73 -1 O ILE B 72 N MET B 19 SHEET 8 C 8 THR B 89 GLU B 92 -1 O SER B 91 N THR B 71 SHEET 1 D 7 PHE B 196 LYS B 198 0 SHEET 2 D 7 LYS B 172 ARG B 181 -1 N GLN B 174 O LYS B 198 SHEET 3 D 7 ILE B 188 HIS B 190 -1 O HIS B 190 N HIS B 179 SHEET 4 D 7 ASN B 153 TRP B 158 1 N VAL B 157 O LEU B 189 SHEET 5 D 7 ILE B 143 LYS B 148 -1 N ILE B 147 O ILE B 154 SHEET 6 D 7 LEU B 126 VAL B 138 -1 N LYS B 137 O THR B 144 SHEET 7 D 7 LYS B 172 ARG B 181 -1 O PHE B 178 N ILE B 127 SHEET 1 E 8 VAL C 13 HIS C 15 0 SHEET 2 E 8 TYR C 75 SER C 78 -1 O TYR C 75 N HIS C 15 SHEET 3 E 8 ILE C 81 ILE C 84 -1 O ILE C 81 N SER C 78 SHEET 4 E 8 TYR C 50 VAL C 55 1 N LYS C 54 O LEU C 82 SHEET 5 E 8 PHE C 40 ALA C 45 -1 N ALA C 42 O VAL C 53 SHEET 6 E 8 MET C 19 ALA C 26 -1 N MET C 22 O ALA C 45 SHEET 7 E 8 PHE C 69 SER C 73 -1 O ILE C 70 N VAL C 21 SHEET 8 E 8 THR C 89 GLU C 92 -1 O SER C 91 N THR C 71 SHEET 1 F 7 PHE C 196 LYS C 198 0 SHEET 2 F 7 LYS C 172 ARG C 181 -1 N GLN C 174 O LYS C 198 SHEET 3 F 7 ILE C 188 HIS C 190 -1 O HIS C 190 N HIS C 179 SHEET 4 F 7 ASN C 153 TRP C 158 1 N VAL C 157 O LEU C 189 SHEET 5 F 7 ILE C 143 LYS C 148 -1 N ILE C 147 O ILE C 154 SHEET 6 F 7 LEU C 126 VAL C 138 -1 N LYS C 137 O THR C 144 SHEET 7 F 7 LYS C 172 ARG C 181 -1 O PHE C 178 N ILE C 127 SHEET 1 G 8 VAL D 13 HIS D 15 0 SHEET 2 G 8 TYR D 75 SER D 78 -1 O ASN D 77 N VAL D 13 SHEET 3 G 8 ILE D 81 ILE D 84 -1 O ILE D 81 N SER D 78 SHEET 4 G 8 GLN D 49 VAL D 55 1 N LYS D 54 O LEU D 82 SHEET 5 G 8 PHE D 40 THR D 46 -1 N THR D 46 O GLN D 49 SHEET 6 G 8 MET D 19 ALA D 26 -1 N LEU D 24 O THR D 43 SHEET 7 G 8 PHE D 69 SER D 73 -1 O ILE D 70 N VAL D 21 SHEET 8 G 8 THR D 89 GLU D 92 -1 O SER D 91 N THR D 71 SHEET 1 H 6 LEU D 126 GLY D 129 0 SHEET 2 H 6 LEU D 175 LEU D 180 -1 O LEU D 175 N GLY D 129 SHEET 3 H 6 ILE D 188 HIS D 190 -1 O HIS D 190 N HIS D 179 SHEET 4 H 6 ASP D 152 TRP D 158 1 N LYS D 155 O LEU D 189 SHEET 5 H 6 ILE D 143 ASP D 149 -1 N PHE D 145 O VAL D 156 SHEET 6 H 6 ALA D 132 VAL D 138 -1 N LYS D 137 O THR D 144 SHEET 1 I 3 LEU D 126 GLY D 129 0 SHEET 2 I 3 LEU D 175 LEU D 180 -1 O LEU D 175 N GLY D 129 SHEET 3 I 3 PHE D 196 ILE D 197 -1 O PHE D 196 N PHE D 176 CISPEP 1 THR B 3 PRO B 4 0 -6.97 CISPEP 2 ASN D 150 GLU D 151 0 -6.31 CRYST1 106.304 109.940 106.137 90.00 120.03 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009407 0.000000 0.005438 0.00000 SCALE2 0.000000 0.009096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010883 0.00000