HEADER TRANSFERASE 20-FEB-13 4JBY TITLE CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 TITLE 2 IN COMPLEX WITH F-SK78 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 45-376; COMPND 5 SYNONYM: HSV1-TK; COMPND 6 EC: 2.7.1.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: HHV-1; SOURCE 4 ORGANISM_TAXID: 10299; SOURCE 5 STRAIN: 17; SOURCE 6 GENE: TK, TK (UL23), UL23; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS DNA SYNTHESIS, PET IMAGING TRACER, ATP BINDING, NUCLEOTIDE BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PERNOT,I.NOVAKOVIC,Y.WESTERMAIER,R.PEROZZO,S.RAIC-MALIC,L.SCAPOZZA REVDAT 3 20-SEP-23 4JBY 1 REMARK REVDAT 2 02-OCT-13 4JBY 1 AUTHOR SOURCE REVDAT 1 06-MAR-13 4JBY 0 JRNL AUTH L.PERNOT,I.NOVAKOVIC,R.PEROZZO,S.RAIC-MALIC,L.SCAPOZZA JRNL TITL NEW THYMINE DERIVATIVES AS HSV1-TK LIGAND FOR THE JRNL TITL 2 DEVELOPMENT OF PET IMAGING TRACER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.MARTIC,L.PERNOT,Y.WESTERMAIER,R.PEROZZO,T.G.KRALJEVIC, REMARK 1 AUTH 2 S.KRISTAFOR,S.RAIC-MALIC,L.SCAPOZZA,S.AMETAMEY REMARK 1 TITL SYNTHESIS, CRYSTAL STRUCTURE, AND IN VITRO BIOLOGICAL REMARK 1 TITL 2 EVALUATION OF C-6 PYRIMIDINE DERIVATIVES: NEW LEAD REMARK 1 TITL 3 STRUCTURES FOR MONITORING GENE EXPRESSION IN VIVO. REMARK 1 REF NUCLEOSIDES NUCLEOTIDES V. 30 293 2011 REMARK 1 REF 2 NUCLEIC ACIDS REMARK 1 REFN ISSN 1525-7770 REMARK 1 PMID 21623543 REMARK 1 DOI 10.1080/15257770.2011.581258 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.KRISTAFOR,I.NOVAKOVIC,T.GAZIVODA KRALJEVIC, REMARK 1 AUTH 2 S.KRALJEVIC PAVELIC,P.LUCIN,Y.WESTERMAIER,L.PERNOT, REMARK 1 AUTH 3 L.SCAPOZZA,S.M.AMETAMEY,S.RAIC-MALIC REMARK 1 TITL A NEW N-METHYL THYMINE DERIVATIVE COMPRISING A REMARK 1 TITL 2 DIHYDROXYISOBUTENYL UNIT AS LIGAND FOR THYMIDINE KINASE OF REMARK 1 TITL 3 HERPES SIMPLEX VIRUS TYPE 1 (HSV-1 TK). REMARK 1 REF BIOORG.MED.CHEM.LETT. V. 21 6161 2011 REMARK 1 REFN ISSN 0960-894X REMARK 1 PMID 21911293 REMARK 1 DOI 10.1016/J.BMCL.2011.07.115 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 47447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.220 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0798 - 4.8120 1.00 3499 154 0.1746 0.1709 REMARK 3 2 4.8120 - 3.8228 1.00 3379 149 0.1377 0.1500 REMARK 3 3 3.8228 - 3.3406 1.00 3347 147 0.1529 0.1889 REMARK 3 4 3.3406 - 3.0356 1.00 3343 147 0.1863 0.2385 REMARK 3 5 3.0356 - 2.8183 1.00 3302 145 0.1924 0.2541 REMARK 3 6 2.8183 - 2.6523 1.00 3293 145 0.1834 0.2210 REMARK 3 7 2.6523 - 2.5195 0.99 3281 144 0.1869 0.2647 REMARK 3 8 2.5195 - 2.4099 0.99 3247 143 0.1855 0.2752 REMARK 3 9 2.4099 - 2.3172 0.98 3239 143 0.1813 0.2603 REMARK 3 10 2.3172 - 2.2373 0.97 3199 141 0.1811 0.2510 REMARK 3 11 2.2373 - 2.1674 0.95 3143 138 0.1861 0.2431 REMARK 3 12 2.1674 - 2.1054 0.94 3109 137 0.2026 0.2764 REMARK 3 13 2.1054 - 2.0500 0.93 3024 133 0.2324 0.3234 REMARK 3 14 2.0500 - 2.0000 0.92 3042 134 0.2457 0.3478 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4943 REMARK 3 ANGLE : 1.090 6758 REMARK 3 CHIRALITY : 0.073 785 REMARK 3 PLANARITY : 0.005 858 REMARK 3 DIHEDRAL : 11.984 1793 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47484 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3F0T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9-1.2 M LITHIUM SULFATE, 1 MM DTT, REMARK 280 0.1 M HEPES, PH 7.5-8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.15450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.15450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.58300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.28450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.58300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.28450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.15450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.58300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.28450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.15450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.58300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.28450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 759 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 819 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 512 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 536 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 627 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 ALA A 152 REMARK 465 THR A 265 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 ALA A 375 REMARK 465 ASN A 376 REMARK 465 LYS B 45 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 HIS B 151 REMARK 465 ALA B 152 REMARK 465 THR B 265 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 ALA B 375 REMARK 465 ASN B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 THR A 65 CB OG1 CG2 REMARK 470 GLN A 67 CD OE1 NE2 REMARK 470 ALA A 71 CB REMARK 470 LEU A 72 CD1 CD2 REMARK 470 SER A 74 CB OG REMARK 470 ARG A 212 CD NE CZ NH1 NH2 REMARK 470 ARG A 366 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 370 CD NE CZ NH1 NH2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 ARG B 212 CD NE CZ NH1 NH2 REMARK 470 LYS B 219 CD CE NZ REMARK 470 ARG B 370 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -145.81 -137.83 REMARK 500 VAL A 90 -53.74 -129.46 REMARK 500 ARG A 163 153.90 81.03 REMARK 500 LEU A 170 -52.07 -120.62 REMARK 500 ARG A 293 42.44 -89.96 REMARK 500 ASP B 55 -156.03 -135.88 REMARK 500 SER B 74 -73.16 -103.85 REMARK 500 ARG B 75 -48.76 -170.34 REMARK 500 VAL B 90 -55.18 -133.80 REMARK 500 ARG B 163 156.75 82.79 REMARK 500 LEU B 170 -54.52 -123.37 REMARK 500 SER B 263 141.89 -176.29 REMARK 500 SER B 276 -155.84 -110.94 REMARK 500 SER B 276 -157.14 -109.47 REMARK 500 ASN B 277 18.21 31.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FSK A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FSK B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F0T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH N-METHYL-DHBT REMARK 900 RELATED ID: 3RDP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH N-METHYL-FHBT REMARK 900 RELATED ID: 1E2P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH DHBT REMARK 900 RELATED ID: 4IVP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH IN51/20 REMARK 900 RELATED ID: 4IVQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH IN43/5 REMARK 900 RELATED ID: 4IVR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH IN52/10 REMARK 900 RELATED ID: 4JBX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH SK78 DBREF 4JBY A 45 376 UNP P03176 KITH_HHV11 45 376 DBREF 4JBY B 45 376 UNP P03176 KITH_HHV11 45 376 SEQRES 1 A 332 LYS MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO SEQRES 2 A 332 HIS GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL SEQRES 3 A 332 ALA LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU SEQRES 4 A 332 PRO MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR SEQRES 5 A 332 ILE ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN SEQRES 6 A 332 GLY GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SEQRES 7 A 332 SER ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR SEQRES 8 A 332 ASP ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SEQRES 9 A 332 SER SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE SEQRES 10 A 332 ASP ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA SEQRES 11 A 332 ALA ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL SEQRES 12 A 332 LEU ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY SEQRES 13 A 332 THR ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS SEQRES 14 A 332 ILE ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG SEQRES 15 A 332 LEU ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR SEQRES 16 A 332 GLY LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY SEQRES 17 A 332 GLY SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR SEQRES 18 A 332 ALA VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA SEQRES 19 A 332 GLY PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU SEQRES 20 A 332 PHE ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU SEQRES 21 A 332 TYR ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS SEQRES 22 A 332 ARG LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP SEQRES 23 A 332 GLN SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU SEQRES 24 A 332 THR SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SEQRES 25 A 332 SER ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA SEQRES 26 A 332 ARG GLU MET GLY GLU ALA ASN SEQRES 1 B 332 LYS MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO SEQRES 2 B 332 HIS GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL SEQRES 3 B 332 ALA LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU SEQRES 4 B 332 PRO MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR SEQRES 5 B 332 ILE ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN SEQRES 6 B 332 GLY GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SEQRES 7 B 332 SER ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR SEQRES 8 B 332 ASP ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SEQRES 9 B 332 SER SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE SEQRES 10 B 332 ASP ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA SEQRES 11 B 332 ALA ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL SEQRES 12 B 332 LEU ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY SEQRES 13 B 332 THR ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS SEQRES 14 B 332 ILE ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG SEQRES 15 B 332 LEU ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR SEQRES 16 B 332 GLY LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY SEQRES 17 B 332 GLY SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR SEQRES 18 B 332 ALA VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA SEQRES 19 B 332 GLY PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU SEQRES 20 B 332 PHE ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU SEQRES 21 B 332 TYR ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS SEQRES 22 B 332 ARG LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP SEQRES 23 B 332 GLN SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU SEQRES 24 B 332 THR SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SEQRES 25 B 332 SER ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA SEQRES 26 B 332 ARG GLU MET GLY GLU ALA ASN HET FSK A 601 16 HET SO4 A 602 5 HET SO4 A 603 5 HET FSK B 401 16 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET EDO B 405 4 HETNAM FSK 6-[(1Z)-3-FLUORO-2-(HYDROXYMETHYL)PROP-1-EN-1-YL]-1,5- HETNAM 2 FSK DIMETHYLPYRIMIDINE-2,4(1H,3H)-DIONE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FSK 2(C10 H13 F N2 O3) FORMUL 4 SO4 5(O4 S 2-) FORMUL 10 EDO C2 H6 O2 FORMUL 11 HOH *323(H2 O) HELIX 1 1 LYS A 62 GLY A 73 1 12 HELIX 2 2 PRO A 84 VAL A 90 1 7 HELIX 3 3 GLU A 95 GLN A 109 1 15 HELIX 4 4 SER A 113 ALA A 140 1 28 HELIX 5 5 HIS A 164 LEU A 170 1 7 HELIX 6 6 LEU A 170 MET A 179 1 10 HELIX 7 7 THR A 183 LEU A 193 1 11 HELIX 8 8 PRO A 209 ARG A 220 1 12 HELIX 9 9 ASP A 228 CYS A 251 1 24 HELIX 10 10 SER A 254 TRP A 259 1 6 HELIX 11 11 GLY A 260 SER A 263 5 4 HELIX 12 12 HIS A 283 ARG A 293 5 11 HELIX 13 13 ALA A 294 LEU A 298 5 5 HELIX 14 14 TYR A 305 SER A 321 1 17 HELIX 15 15 SER A 332 SER A 345 1 14 HELIX 16 16 GLY A 356 GLY A 373 1 18 HELIX 17 17 GLY B 61 ALA B 71 1 11 HELIX 18 18 PRO B 84 VAL B 90 1 7 HELIX 19 19 GLU B 95 GLN B 109 1 15 HELIX 20 20 SER B 113 ALA B 140 1 28 HELIX 21 21 PRO B 165 LEU B 170 1 6 HELIX 22 22 LEU B 170 MET B 179 1 10 HELIX 23 23 THR B 183 LEU B 193 1 11 HELIX 24 24 PRO B 209 ARG B 220 1 12 HELIX 25 25 ASP B 228 CYS B 251 1 24 HELIX 26 26 SER B 254 TRP B 259 1 6 HELIX 27 27 GLY B 260 LEU B 262 5 3 HELIX 28 28 HIS B 283 ARG B 293 5 11 HELIX 29 29 ALA B 294 LEU B 298 5 5 HELIX 30 30 TYR B 305 SER B 321 1 17 HELIX 31 31 SER B 332 THR B 344 1 13 HELIX 32 32 SER B 345 MET B 347 5 3 HELIX 33 33 GLY B 356 GLY B 373 1 18 SHEET 1 A 5 ILE A 78 VAL A 81 0 SHEET 2 A 5 LEU A 157 ASP A 162 1 O ILE A 160 N VAL A 79 SHEET 3 A 5 THR A 48 ILE A 54 1 N LEU A 50 O LEU A 159 SHEET 4 A 5 THR A 350 VAL A 352 -1 O THR A 350 N LEU A 49 SHEET 5 A 5 ILE A 143 GLU A 146 -1 N GLY A 145 O HIS A 351 SHEET 1 B 5 ILE A 78 VAL A 81 0 SHEET 2 B 5 LEU A 157 ASP A 162 1 O ILE A 160 N VAL A 79 SHEET 3 B 5 THR A 48 ILE A 54 1 N LEU A 50 O LEU A 159 SHEET 4 B 5 ASN A 202 ALA A 207 1 O VAL A 204 N TYR A 53 SHEET 5 B 5 HIS A 323 ASP A 328 1 O PHE A 325 N LEU A 205 SHEET 1 C 5 ILE B 78 VAL B 81 0 SHEET 2 C 5 LEU B 157 ASP B 162 1 O ILE B 160 N VAL B 81 SHEET 3 C 5 THR B 48 ILE B 54 1 N LEU B 50 O LEU B 159 SHEET 4 C 5 THR B 350 VAL B 352 -1 O THR B 350 N LEU B 49 SHEET 5 C 5 ILE B 143 GLU B 146 -1 N GLY B 144 O HIS B 351 SHEET 1 D 5 ILE B 78 VAL B 81 0 SHEET 2 D 5 LEU B 157 ASP B 162 1 O ILE B 160 N VAL B 81 SHEET 3 D 5 THR B 48 ILE B 54 1 N LEU B 50 O LEU B 159 SHEET 4 D 5 ASN B 202 ALA B 207 1 O ASN B 202 N TYR B 53 SHEET 5 D 5 HIS B 323 ASP B 328 1 O PHE B 325 N LEU B 205 SITE 1 AC1 12 HIS A 58 TRP A 88 ILE A 97 GLN A 125 SITE 2 AC1 12 MET A 128 ARG A 163 ALA A 168 TYR A 172 SITE 3 AC1 12 ARG A 222 HOH A 706 HOH A 735 HOH A 764 SITE 1 AC2 8 HIS A 58 GLY A 59 GLY A 61 ARG A 220 SITE 2 AC2 8 ARG A 222 HOH A 705 HOH A 854 HOH A 861 SITE 1 AC3 4 HIS A 105 ARG A 226 SER B 74 ARG B 75 SITE 1 AC4 14 HIS B 58 GLU B 83 TRP B 88 ILE B 97 SITE 2 AC4 14 GLN B 125 MET B 128 TYR B 132 ARG B 163 SITE 3 AC4 14 ALA B 168 TYR B 172 ARG B 222 HOH B 519 SITE 4 AC4 14 HOH B 565 HOH B 640 SITE 1 AC5 10 LYS A 219 HIS B 58 GLY B 59 GLY B 61 SITE 2 AC5 10 LYS B 62 THR B 63 ARG B 222 HOH B 544 SITE 3 AC5 10 HOH B 559 HOH B 640 SITE 1 AC6 5 LYS B 317 ARG B 320 SER B 321 HOH B 511 SITE 2 AC6 5 HOH B 617 SITE 1 AC7 4 HOH A 850 ARG B 216 ARG B 220 HOH B 649 SITE 1 AC8 3 HIS B 105 ARG B 106 ARG B 226 CRYST1 113.166 116.569 108.309 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008837 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009233 0.00000