data_4JD8 # _entry.id 4JD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JD8 pdb_00004jd8 10.2210/pdb4jd8/pdb NDB NA2276 ? ? RCSB RCSB077899 ? ? WWPDB D_1000077899 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2013-04-24 _pdbx_database_PDB_obs_spr.pdb_id 4JD8 _pdbx_database_PDB_obs_spr.replace_pdb_id 4E87 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DX4 'Lower resolution model' unspecified PDB 4E7Y . unspecified PDB 4E87 . unspecified PDB 4E8S . unspecified PDB 4E8X . unspecified PDB 4E95 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JD8 _pdbx_database_status.recvd_initial_deposition_date 2013-02-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cook, D.S.' 1 'Hall, J.P.' 2 'Cardin, C.J.' 3 # _citation.id primary _citation.title 'X-ray Crystal Structure of rac-[Ru(phen)2dppz](2+) with d(ATGCAT)2 Shows Enantiomer Orientations and Water Ordering.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 135 _citation.page_first 12652 _citation.page_last 12659 _citation.year 2013 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23875832 _citation.pdbx_database_id_DOI 10.1021/ja403590e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hall, J.P.' 1 ? primary 'Cook, D.' 2 ? primary 'Morte, S.R.' 3 ? primary 'McIntyre, P.' 4 ? primary 'Buchner, K.' 5 ? primary 'Beer, H.' 6 ? primary 'Cardin, D.J.' 7 ? primary 'Brazier, J.A.' 8 ? primary 'Winter, G.' 9 ? primary 'Kelly, J.M.' 10 ? primary 'Cardin, C.J.' 11 ? # _cell.entry_id 4JD8 _cell.length_a 37.550 _cell.length_b 37.550 _cell.length_c 54.371 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JD8 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*TP*GP*CP*AP*T)-3') ; 1808.229 2 ? ? ? ? 2 non-polymer syn 'Delta-Ru(phen)2(dppz) complex' 743.779 1 ? ? ? ? 3 non-polymer syn 'Lambda-Ru(phen)2(dppz) complex' 743.779 1 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DT)(DG)(DC)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ATGCAT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DG n 1 4 DC n 1 5 DA n 1 6 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA Purchased from ATDBio' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4JD8 _struct_ref.pdbx_db_accession 4JD8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ATGCAT _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JD8 A 1 ? 6 ? 4JD8 1 ? 6 ? 1 6 2 1 4JD8 B 1 ? 6 ? 4JD8 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0TN non-polymer . 'Delta-Ru(phen)2(dppz) complex' ? 'C42 H26 N8 Ru' 743.779 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 RKP non-polymer . 'Lambda-Ru(phen)2(dppz) complex' ? 'C42 H26 N8 Ru' 743.779 # _exptl.entry_id 4JD8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_percent_sol 59.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;1UL, 1mM D(ATGCAT)2 1UL, 3mM RAC-[RU(PHEN)2DPPZ]2CL 6UL, 40mM SPERMINE, 40mM SODIUM CACODYLATE PH 6.3, 10% MPD (V/V), 80 mM KCL, 20 mM BaCL2, 1ML OF 35% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-10-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DUAL SI (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4JD8 _reflns.observed_criterion_sigma_I 1.500 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.520 _reflns.d_resolution_high 1.160 _reflns.number_obs 15712 _reflns.number_all ? _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.16 _reflns_shell.d_res_low 1.18 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4JD8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15678 _refine.ls_number_reflns_all 15894 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.52 _refine.ls_d_res_high 1.16 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.139 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.138 _refine.ls_R_factor_R_free 0.162 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.030 _refine.ls_number_reflns_R_free 789 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 4E87 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.110 _refine.pdbx_overall_phase_error 18.350 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 103 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 438 _refine_hist.d_res_high 1.16 _refine_hist.d_res_low 32.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.015 ? ? 396 'X-RAY DIFFRACTION' ? f_angle_d 2.966 ? ? 628 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 32.509 ? ? 122 'X-RAY DIFFRACTION' ? f_chiral_restr 0.091 ? ? 46 'X-RAY DIFFRACTION' ? f_plane_restr 0.029 ? ? 18 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.1570 1.2295 2420 0.2298 98.00 0.2602 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.2295 1.3244 2431 0.1852 98.00 0.2273 . . 125 . . . . 'X-RAY DIFFRACTION' . 1.3244 1.4577 2440 0.1332 98.00 0.1811 . . 134 . . . . 'X-RAY DIFFRACTION' . 1.4577 1.6687 2488 0.1050 99.00 0.1515 . . 128 . . . . 'X-RAY DIFFRACTION' . 1.6687 2.1023 2505 0.1230 99.00 0.1346 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.1023 32.5319 2605 0.1404 97.00 0.1607 . . 123 . . . . # _struct.entry_id 4JD8 _struct.title 'Racemic-[Ru(phen)2(dppz)]2+] bound to synthetic DNA at high resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JD8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Intercalation, Racemic Ligand-DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B DC 4 OP1 ? ? ? 1_555 E K . K ? ? B DC 4 B K 103 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc2 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? B K 103 B HOH 216 1_555 ? ? ? ? ? ? ? 2.884 ? ? metalc3 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? B K 103 B HOH 241 1_555 ? ? ? ? ? ? ? 2.986 ? ? metalc4 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? B K 103 B HOH 245 1_555 ? ? ? ? ? ? ? 2.605 ? ? metalc5 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? B K 103 B HOH 248 1_555 ? ? ? ? ? ? ? 2.791 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 1 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 1 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 2 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 2 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 3 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 3 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 3 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 4 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 4 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 4 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 5 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 5 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 6 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 6 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B 0TN 101 ? 8 'BINDING SITE FOR RESIDUE 0TN B 101' AC2 Software B RKP 102 ? 8 'BINDING SITE FOR RESIDUE RKP B 102' AC3 Software B K 103 ? 10 'BINDING SITE FOR RESIDUE K B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DT A 2 ? DT A 2 . ? 1_555 ? 2 AC1 8 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 8 DC A 4 ? DC A 4 . ? 1_555 ? 4 AC1 8 DT A 6 ? DT A 6 . ? 5_564 ? 5 AC1 8 DA B 1 ? DA B 1 . ? 5_564 ? 6 AC1 8 DC B 4 ? DC B 4 . ? 1_555 ? 7 AC1 8 DA B 5 ? DA B 5 . ? 1_555 ? 8 AC1 8 DT B 6 ? DT B 6 . ? 1_555 ? 9 AC2 8 DA A 1 ? DA A 1 . ? 2_565 ? 10 AC2 8 DC A 4 ? DC A 4 . ? 1_555 ? 11 AC2 8 DA A 5 ? DA A 5 . ? 1_555 ? 12 AC2 8 DT A 6 ? DT A 6 . ? 1_555 ? 13 AC2 8 DT B 2 ? DT B 2 . ? 1_555 ? 14 AC2 8 DG B 3 ? DG B 3 . ? 1_555 ? 15 AC2 8 DA B 5 ? DA B 5 . ? 2_565 ? 16 AC2 8 DT B 6 ? DT B 6 . ? 2_565 ? 17 AC3 10 DC B 4 ? DC B 4 . ? 1_555 ? 18 AC3 10 DC B 4 ? DC B 4 . ? 5_554 ? 19 AC3 10 HOH G . ? HOH B 216 . ? 1_555 ? 20 AC3 10 HOH G . ? HOH B 216 . ? 5_554 ? 21 AC3 10 HOH G . ? HOH B 241 . ? 1_555 ? 22 AC3 10 HOH G . ? HOH B 241 . ? 5_554 ? 23 AC3 10 HOH G . ? HOH B 245 . ? 1_555 ? 24 AC3 10 HOH G . ? HOH B 245 . ? 5_554 ? 25 AC3 10 HOH G . ? HOH B 248 . ? 5_554 ? 26 AC3 10 HOH G . ? HOH B 248 . ? 1_555 ? # _database_PDB_matrix.entry_id 4JD8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JD8 _atom_sites.fract_transf_matrix[1][1] 0.026631 _atom_sites.fract_transf_matrix[1][2] 0.015376 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030751 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018392 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K N O P RU # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DT 2 2 2 DT DT B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DT 6 6 6 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0TN 1 101 1 0TN 0TN B . D 3 RKP 1 102 1 RKP RKP B . E 4 K 1 103 2 K K B . F 5 HOH 1 101 3 HOH HOH A . F 5 HOH 2 102 4 HOH HOH A . F 5 HOH 3 103 6 HOH HOH A . F 5 HOH 4 104 8 HOH HOH A . F 5 HOH 5 105 11 HOH HOH A . F 5 HOH 6 106 15 HOH HOH A . F 5 HOH 7 107 17 HOH HOH A . F 5 HOH 8 108 18 HOH HOH A . F 5 HOH 9 109 19 HOH HOH A . F 5 HOH 10 110 21 HOH HOH A . F 5 HOH 11 111 22 HOH HOH A . F 5 HOH 12 112 25 HOH HOH A . F 5 HOH 13 113 28 HOH HOH A . F 5 HOH 14 114 29 HOH HOH A . F 5 HOH 15 115 30 HOH HOH A . F 5 HOH 16 116 31 HOH HOH A . F 5 HOH 17 117 32 HOH HOH A . F 5 HOH 18 118 36 HOH HOH A . F 5 HOH 19 119 38 HOH HOH A . F 5 HOH 20 120 39 HOH HOH A . F 5 HOH 21 121 40 HOH HOH A . F 5 HOH 22 122 42 HOH HOH A . F 5 HOH 23 123 44 HOH HOH A . F 5 HOH 24 124 45 HOH HOH A . F 5 HOH 25 125 47 HOH HOH A . F 5 HOH 26 126 50 HOH HOH A . F 5 HOH 27 127 51 HOH HOH A . F 5 HOH 28 128 53 HOH HOH A . F 5 HOH 29 129 54 HOH HOH A . F 5 HOH 30 130 57 HOH HOH A . F 5 HOH 31 131 59 HOH HOH A . F 5 HOH 32 132 61 HOH HOH A . F 5 HOH 33 133 64 HOH HOH A . F 5 HOH 34 134 66 HOH HOH A . F 5 HOH 35 135 71 HOH HOH A . F 5 HOH 36 136 73 HOH HOH A . F 5 HOH 37 137 77 HOH HOH A . F 5 HOH 38 138 78 HOH HOH A . F 5 HOH 39 139 79 HOH HOH A . F 5 HOH 40 140 82 HOH HOH A . F 5 HOH 41 141 84 HOH HOH A . F 5 HOH 42 142 85 HOH HOH A . G 5 HOH 1 201 1 HOH HOH B . G 5 HOH 2 202 2 HOH HOH B . G 5 HOH 3 203 5 HOH HOH B . G 5 HOH 4 204 7 HOH HOH B . G 5 HOH 5 205 9 HOH HOH B . G 5 HOH 6 206 10 HOH HOH B . G 5 HOH 7 207 12 HOH HOH B . G 5 HOH 8 208 13 HOH HOH B . G 5 HOH 9 209 14 HOH HOH B . G 5 HOH 10 210 16 HOH HOH B . G 5 HOH 11 211 20 HOH HOH B . G 5 HOH 12 212 23 HOH HOH B . G 5 HOH 13 213 24 HOH HOH B . G 5 HOH 14 214 26 HOH HOH B . G 5 HOH 15 215 27 HOH HOH B . G 5 HOH 16 216 33 HOH HOH B . G 5 HOH 17 217 34 HOH HOH B . G 5 HOH 18 218 35 HOH HOH B . G 5 HOH 19 219 37 HOH HOH B . G 5 HOH 20 220 41 HOH HOH B . G 5 HOH 21 221 43 HOH HOH B . G 5 HOH 22 222 46 HOH HOH B . G 5 HOH 23 223 48 HOH HOH B . G 5 HOH 24 224 49 HOH HOH B . G 5 HOH 25 225 52 HOH HOH B . G 5 HOH 26 226 55 HOH HOH B . G 5 HOH 27 227 56 HOH HOH B . G 5 HOH 28 228 58 HOH HOH B . G 5 HOH 29 229 60 HOH HOH B . G 5 HOH 30 230 62 HOH HOH B . G 5 HOH 31 231 63 HOH HOH B . G 5 HOH 32 232 65 HOH HOH B . G 5 HOH 33 233 67 HOH HOH B . G 5 HOH 34 234 68 HOH HOH B . G 5 HOH 35 235 69 HOH HOH B . G 5 HOH 36 236 70 HOH HOH B . G 5 HOH 37 237 72 HOH HOH B . G 5 HOH 38 238 74 HOH HOH B . G 5 HOH 39 239 75 HOH HOH B . G 5 HOH 40 240 76 HOH HOH B . G 5 HOH 41 241 80 HOH HOH B . G 5 HOH 42 242 81 HOH HOH B . G 5 HOH 43 243 83 HOH HOH B . G 5 HOH 44 244 86 HOH HOH B . G 5 HOH 45 245 87 HOH HOH B . G 5 HOH 46 246 88 HOH HOH B . G 5 HOH 47 247 89 HOH HOH B . G 5 HOH 48 248 248 HOH HOH B . G 5 HOH 49 249 91 HOH HOH B . G 5 HOH 50 250 92 HOH HOH B . G 5 HOH 51 251 93 HOH HOH B . G 5 HOH 52 252 94 HOH HOH B . G 5 HOH 53 253 95 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B K 103 ? E K . 2 1 B HOH 248 ? G HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DC 4 ? B DC 4 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 216 ? 1_555 83.5 ? 2 OP1 ? B DC 4 ? B DC 4 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 241 ? 1_555 70.8 ? 3 O ? G HOH . ? B HOH 216 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 241 ? 1_555 63.5 ? 4 OP1 ? B DC 4 ? B DC 4 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 245 ? 1_555 80.0 ? 5 O ? G HOH . ? B HOH 216 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 245 ? 1_555 72.7 ? 6 O ? G HOH . ? B HOH 241 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 245 ? 1_555 129.1 ? 7 OP1 ? B DC 4 ? B DC 4 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 142.7 ? 8 O ? G HOH . ? B HOH 216 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 70.5 ? 9 O ? G HOH . ? B HOH 241 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 116.8 ? 10 O ? G HOH . ? B HOH 245 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 67.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-24 2 'Structure model' 1 1 2013-09-18 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.1_1168)' ? 3 MOSFLM 'data reduction' . ? 4 Aimless 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 240 ? ? O B HOH 243 ? ? 1.61 2 1 O A HOH 110 ? ? O A HOH 141 ? ? 1.87 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 137 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 243 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_454 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DT 2 ? ? P A DT 2 ? ? OP2 A DT 2 ? ? 98.33 105.70 -7.37 0.90 N 2 1 "O5'" A DT 6 ? ? P A DT 6 ? ? OP1 A DT 6 ? ? 121.72 110.70 11.02 1.20 N 3 1 "O5'" A DT 6 ? ? P A DT 6 ? ? OP2 A DT 6 ? ? 97.42 105.70 -8.28 0.90 N 4 1 "C1'" A DT 6 ? ? "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? 102.15 110.10 -7.95 1.00 N 5 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.57 108.30 3.27 0.30 N 6 1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1 B DC 4 ? ? 112.39 108.30 4.09 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0TN RU RU N N 1 0TN C1 C Y N 2 0TN N1 N Y N 3 0TN C2 C Y N 4 0TN N2 N Y N 5 0TN C3 C Y N 6 0TN N3 N Y N 7 0TN C4 C Y N 8 0TN N4 N Y N 9 0TN C5 C Y N 10 0TN N5 N Y N 11 0TN C6 C Y N 12 0TN C7 C Y N 13 0TN C8 C Y N 14 0TN N8 N Y N 15 0TN C9 C Y N 16 0TN N9 N Y N 17 0TN C10 C Y N 18 0TN C11 C Y N 19 0TN C12 C Y N 20 0TN N12 N Y N 21 0TN C13 C Y N 22 0TN C14 C Y N 23 0TN C15 C Y N 24 0TN C16 C Y N 25 0TN C17 C Y N 26 0TN C18 C Y N 27 0TN C19 C Y N 28 0TN C20 C Y N 29 0TN C21 C Y N 30 0TN C22 C Y N 31 0TN C23 C Y N 32 0TN C24 C Y N 33 0TN C25 C Y N 34 0TN C26 C Y N 35 0TN C27 C Y N 36 0TN C28 C Y N 37 0TN C29 C Y N 38 0TN C30 C Y N 39 0TN C31 C Y N 40 0TN C32 C Y N 41 0TN C33 C Y N 42 0TN C34 C Y N 43 0TN C35 C Y N 44 0TN C36 C Y N 45 0TN C37 C Y N 46 0TN C38 C Y N 47 0TN C41 C Y N 48 0TN C42 C Y N 49 0TN C43 C Y N 50 0TN C44 C Y N 51 0TN H1 H N N 52 0TN H2 H N N 53 0TN H3 H N N 54 0TN H4 H N N 55 0TN H5 H N N 56 0TN H6 H N N 57 0TN H7 H N N 58 0TN H8 H N N 59 0TN H9 H N N 60 0TN H10 H N N 61 0TN H11 H N N 62 0TN H12 H N N 63 0TN H13 H N N 64 0TN H14 H N N 65 0TN H15 H N N 66 0TN H16 H N N 67 0TN H17 H N N 68 0TN H18 H N N 69 0TN H19 H N N 70 0TN H20 H N N 71 0TN H21 H N N 72 0TN H22 H N N 73 0TN H23 H N N 74 0TN H24 H N N 75 0TN H25 H N N 76 0TN H26 H N N 77 DA OP3 O N N 78 DA P P N N 79 DA OP1 O N N 80 DA OP2 O N N 81 DA "O5'" O N N 82 DA "C5'" C N N 83 DA "C4'" C N R 84 DA "O4'" O N N 85 DA "C3'" C N S 86 DA "O3'" O N N 87 DA "C2'" C N N 88 DA "C1'" C N R 89 DA N9 N Y N 90 DA C8 C Y N 91 DA N7 N Y N 92 DA C5 C Y N 93 DA C6 C Y N 94 DA N6 N N N 95 DA N1 N Y N 96 DA C2 C Y N 97 DA N3 N Y N 98 DA C4 C Y N 99 DA HOP3 H N N 100 DA HOP2 H N N 101 DA "H5'" H N N 102 DA "H5''" H N N 103 DA "H4'" H N N 104 DA "H3'" H N N 105 DA "HO3'" H N N 106 DA "H2'" H N N 107 DA "H2''" H N N 108 DA "H1'" H N N 109 DA H8 H N N 110 DA H61 H N N 111 DA H62 H N N 112 DA H2 H N N 113 DC OP3 O N N 114 DC P P N N 115 DC OP1 O N N 116 DC OP2 O N N 117 DC "O5'" O N N 118 DC "C5'" C N N 119 DC "C4'" C N R 120 DC "O4'" O N N 121 DC "C3'" C N S 122 DC "O3'" O N N 123 DC "C2'" C N N 124 DC "C1'" C N R 125 DC N1 N N N 126 DC C2 C N N 127 DC O2 O N N 128 DC N3 N N N 129 DC C4 C N N 130 DC N4 N N N 131 DC C5 C N N 132 DC C6 C N N 133 DC HOP3 H N N 134 DC HOP2 H N N 135 DC "H5'" H N N 136 DC "H5''" H N N 137 DC "H4'" H N N 138 DC "H3'" H N N 139 DC "HO3'" H N N 140 DC "H2'" H N N 141 DC "H2''" H N N 142 DC "H1'" H N N 143 DC H41 H N N 144 DC H42 H N N 145 DC H5 H N N 146 DC H6 H N N 147 DG OP3 O N N 148 DG P P N N 149 DG OP1 O N N 150 DG OP2 O N N 151 DG "O5'" O N N 152 DG "C5'" C N N 153 DG "C4'" C N R 154 DG "O4'" O N N 155 DG "C3'" C N S 156 DG "O3'" O N N 157 DG "C2'" C N N 158 DG "C1'" C N R 159 DG N9 N Y N 160 DG C8 C Y N 161 DG N7 N Y N 162 DG C5 C Y N 163 DG C6 C N N 164 DG O6 O N N 165 DG N1 N N N 166 DG C2 C N N 167 DG N2 N N N 168 DG N3 N N N 169 DG C4 C Y N 170 DG HOP3 H N N 171 DG HOP2 H N N 172 DG "H5'" H N N 173 DG "H5''" H N N 174 DG "H4'" H N N 175 DG "H3'" H N N 176 DG "HO3'" H N N 177 DG "H2'" H N N 178 DG "H2''" H N N 179 DG "H1'" H N N 180 DG H8 H N N 181 DG H1 H N N 182 DG H21 H N N 183 DG H22 H N N 184 DT OP3 O N N 185 DT P P N N 186 DT OP1 O N N 187 DT OP2 O N N 188 DT "O5'" O N N 189 DT "C5'" C N N 190 DT "C4'" C N R 191 DT "O4'" O N N 192 DT "C3'" C N S 193 DT "O3'" O N N 194 DT "C2'" C N N 195 DT "C1'" C N R 196 DT N1 N N N 197 DT C2 C N N 198 DT O2 O N N 199 DT N3 N N N 200 DT C4 C N N 201 DT O4 O N N 202 DT C5 C N N 203 DT C7 C N N 204 DT C6 C N N 205 DT HOP3 H N N 206 DT HOP2 H N N 207 DT "H5'" H N N 208 DT "H5''" H N N 209 DT "H4'" H N N 210 DT "H3'" H N N 211 DT "HO3'" H N N 212 DT "H2'" H N N 213 DT "H2''" H N N 214 DT "H1'" H N N 215 DT H3 H N N 216 DT H71 H N N 217 DT H72 H N N 218 DT H73 H N N 219 DT H6 H N N 220 HOH O O N N 221 HOH H1 H N N 222 HOH H2 H N N 223 K K K N N 224 RKP RU RU N N 225 RKP C1 C Y N 226 RKP N1 N Y N 227 RKP C2 C Y N 228 RKP N2 N Y N 229 RKP C3 C Y N 230 RKP N3 N Y N 231 RKP C4 C Y N 232 RKP N4 N Y N 233 RKP C5 C Y N 234 RKP N5 N Y N 235 RKP C6 C Y N 236 RKP C7 C Y N 237 RKP C8 C Y N 238 RKP N8 N Y N 239 RKP C9 C Y N 240 RKP N9 N Y N 241 RKP C10 C Y N 242 RKP C11 C Y N 243 RKP C12 C Y N 244 RKP N12 N Y N 245 RKP C13 C Y N 246 RKP C14 C Y N 247 RKP C15 C Y N 248 RKP C16 C Y N 249 RKP C17 C Y N 250 RKP C18 C Y N 251 RKP C19 C Y N 252 RKP C20 C Y N 253 RKP C21 C Y N 254 RKP C22 C Y N 255 RKP C23 C Y N 256 RKP C24 C Y N 257 RKP C25 C Y N 258 RKP C26 C Y N 259 RKP C27 C Y N 260 RKP C28 C Y N 261 RKP C29 C Y N 262 RKP C30 C Y N 263 RKP C31 C Y N 264 RKP C32 C Y N 265 RKP C33 C Y N 266 RKP C34 C Y N 267 RKP C35 C Y N 268 RKP C36 C Y N 269 RKP C37 C Y N 270 RKP C38 C Y N 271 RKP C41 C Y N 272 RKP C42 C Y N 273 RKP C43 C Y N 274 RKP C44 C Y N 275 RKP H2 H N N 276 RKP H3 H N N 277 RKP H4 H N N 278 RKP H9 H N N 279 RKP H11 H N N 280 RKP H12 H N N 281 RKP H14 H N N 282 RKP H16 H N N 283 RKP H17 H N N 284 RKP H18 H N N 285 RKP H20 H N N 286 RKP H21 H N N 287 RKP H23 H N N 288 RKP H24 H N N 289 RKP H27 H N N 290 RKP H28 H N N 291 RKP H30 H N N 292 RKP H31 H N N 293 RKP H33 H N N 294 RKP H34 H N N 295 RKP H37 H N N 296 RKP H38 H N N 297 RKP H41 H N N 298 RKP H42 H N N 299 RKP H43 H N N 300 RKP H44 H N N 301 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0TN C18 C14 doub Y N 1 0TN C18 C17 sing Y N 2 0TN C14 C13 sing Y N 3 0TN C17 C16 doub Y N 4 0TN C13 N4 doub Y N 5 0TN C13 C15 sing Y N 6 0TN C44 C37 doub Y N 7 0TN C44 C35 sing Y N 8 0TN C34 C35 doub Y N 9 0TN C34 C33 sing Y N 10 0TN N4 C7 sing Y N 11 0TN C16 C15 sing Y N 12 0TN C37 C38 sing Y N 13 0TN C9 C11 doub Y N 14 0TN C9 C8 sing Y N 15 0TN C35 C36 sing Y N 16 0TN C33 C32 doub Y N 17 0TN C15 N3 doub Y N 18 0TN C11 C12 sing Y N 19 0TN C7 C8 doub Y N 20 0TN C7 C6 sing Y N 21 0TN C8 C10 sing Y N 22 0TN N3 C6 sing Y N 23 0TN C38 N12 doub Y N 24 0TN C36 N12 sing Y N 25 0TN C36 C29 doub Y N 26 0TN C32 C29 sing Y N 27 0TN C32 C43 sing Y N 28 0TN C12 N1 doub Y N 29 0TN C6 C5 doub Y N 30 0TN N12 RU sing N N 31 0TN C10 N1 sing Y N 32 0TN C10 C1 doub Y N 33 0TN C29 N9 sing Y N 34 0TN C43 C31 doub Y N 35 0TN N1 RU sing N N 36 0TN C5 C1 sing Y N 37 0TN C5 C4 sing Y N 38 0TN C1 N2 sing Y N 39 0TN N9 RU sing N N 40 0TN N9 C30 doub Y N 41 0TN C4 C3 doub Y N 42 0TN C31 C30 sing Y N 43 0TN RU N2 sing N N 44 0TN RU N5 sing N N 45 0TN RU N8 sing N N 46 0TN N2 C2 doub Y N 47 0TN C3 C2 sing Y N 48 0TN C20 N5 doub Y N 49 0TN C20 C21 sing Y N 50 0TN N5 C19 sing Y N 51 0TN N8 C28 doub Y N 52 0TN N8 C26 sing Y N 53 0TN C28 C27 sing Y N 54 0TN C21 C41 doub Y N 55 0TN C19 C26 doub Y N 56 0TN C19 C22 sing Y N 57 0TN C26 C25 sing Y N 58 0TN C27 C42 doub Y N 59 0TN C41 C22 sing Y N 60 0TN C22 C23 doub Y N 61 0TN C25 C42 sing Y N 62 0TN C25 C24 doub Y N 63 0TN C23 C24 sing Y N 64 0TN C2 H1 sing N N 65 0TN C3 H2 sing N N 66 0TN C4 H3 sing N N 67 0TN C9 H4 sing N N 68 0TN C11 H5 sing N N 69 0TN C12 H6 sing N N 70 0TN C14 H7 sing N N 71 0TN C16 H8 sing N N 72 0TN C17 H9 sing N N 73 0TN C18 H10 sing N N 74 0TN C20 H11 sing N N 75 0TN C21 H12 sing N N 76 0TN C23 H13 sing N N 77 0TN C24 H14 sing N N 78 0TN C27 H15 sing N N 79 0TN C28 H16 sing N N 80 0TN C30 H17 sing N N 81 0TN C31 H18 sing N N 82 0TN C33 H19 sing N N 83 0TN C34 H20 sing N N 84 0TN C37 H21 sing N N 85 0TN C38 H22 sing N N 86 0TN C41 H23 sing N N 87 0TN C42 H24 sing N N 88 0TN C43 H25 sing N N 89 0TN C44 H26 sing N N 90 DA OP3 P sing N N 91 DA OP3 HOP3 sing N N 92 DA P OP1 doub N N 93 DA P OP2 sing N N 94 DA P "O5'" sing N N 95 DA OP2 HOP2 sing N N 96 DA "O5'" "C5'" sing N N 97 DA "C5'" "C4'" sing N N 98 DA "C5'" "H5'" sing N N 99 DA "C5'" "H5''" sing N N 100 DA "C4'" "O4'" sing N N 101 DA "C4'" "C3'" sing N N 102 DA "C4'" "H4'" sing N N 103 DA "O4'" "C1'" sing N N 104 DA "C3'" "O3'" sing N N 105 DA "C3'" "C2'" sing N N 106 DA "C3'" "H3'" sing N N 107 DA "O3'" "HO3'" sing N N 108 DA "C2'" "C1'" sing N N 109 DA "C2'" "H2'" sing N N 110 DA "C2'" "H2''" sing N N 111 DA "C1'" N9 sing N N 112 DA "C1'" "H1'" sing N N 113 DA N9 C8 sing Y N 114 DA N9 C4 sing Y N 115 DA C8 N7 doub Y N 116 DA C8 H8 sing N N 117 DA N7 C5 sing Y N 118 DA C5 C6 sing Y N 119 DA C5 C4 doub Y N 120 DA C6 N6 sing N N 121 DA C6 N1 doub Y N 122 DA N6 H61 sing N N 123 DA N6 H62 sing N N 124 DA N1 C2 sing Y N 125 DA C2 N3 doub Y N 126 DA C2 H2 sing N N 127 DA N3 C4 sing Y N 128 DC OP3 P sing N N 129 DC OP3 HOP3 sing N N 130 DC P OP1 doub N N 131 DC P OP2 sing N N 132 DC P "O5'" sing N N 133 DC OP2 HOP2 sing N N 134 DC "O5'" "C5'" sing N N 135 DC "C5'" "C4'" sing N N 136 DC "C5'" "H5'" sing N N 137 DC "C5'" "H5''" sing N N 138 DC "C4'" "O4'" sing N N 139 DC "C4'" "C3'" sing N N 140 DC "C4'" "H4'" sing N N 141 DC "O4'" "C1'" sing N N 142 DC "C3'" "O3'" sing N N 143 DC "C3'" "C2'" sing N N 144 DC "C3'" "H3'" sing N N 145 DC "O3'" "HO3'" sing N N 146 DC "C2'" "C1'" sing N N 147 DC "C2'" "H2'" sing N N 148 DC "C2'" "H2''" sing N N 149 DC "C1'" N1 sing N N 150 DC "C1'" "H1'" sing N N 151 DC N1 C2 sing N N 152 DC N1 C6 sing N N 153 DC C2 O2 doub N N 154 DC C2 N3 sing N N 155 DC N3 C4 doub N N 156 DC C4 N4 sing N N 157 DC C4 C5 sing N N 158 DC N4 H41 sing N N 159 DC N4 H42 sing N N 160 DC C5 C6 doub N N 161 DC C5 H5 sing N N 162 DC C6 H6 sing N N 163 DG OP3 P sing N N 164 DG OP3 HOP3 sing N N 165 DG P OP1 doub N N 166 DG P OP2 sing N N 167 DG P "O5'" sing N N 168 DG OP2 HOP2 sing N N 169 DG "O5'" "C5'" sing N N 170 DG "C5'" "C4'" sing N N 171 DG "C5'" "H5'" sing N N 172 DG "C5'" "H5''" sing N N 173 DG "C4'" "O4'" sing N N 174 DG "C4'" "C3'" sing N N 175 DG "C4'" "H4'" sing N N 176 DG "O4'" "C1'" sing N N 177 DG "C3'" "O3'" sing N N 178 DG "C3'" "C2'" sing N N 179 DG "C3'" "H3'" sing N N 180 DG "O3'" "HO3'" sing N N 181 DG "C2'" "C1'" sing N N 182 DG "C2'" "H2'" sing N N 183 DG "C2'" "H2''" sing N N 184 DG "C1'" N9 sing N N 185 DG "C1'" "H1'" sing N N 186 DG N9 C8 sing Y N 187 DG N9 C4 sing Y N 188 DG C8 N7 doub Y N 189 DG C8 H8 sing N N 190 DG N7 C5 sing Y N 191 DG C5 C6 sing N N 192 DG C5 C4 doub Y N 193 DG C6 O6 doub N N 194 DG C6 N1 sing N N 195 DG N1 C2 sing N N 196 DG N1 H1 sing N N 197 DG C2 N2 sing N N 198 DG C2 N3 doub N N 199 DG N2 H21 sing N N 200 DG N2 H22 sing N N 201 DG N3 C4 sing N N 202 DT OP3 P sing N N 203 DT OP3 HOP3 sing N N 204 DT P OP1 doub N N 205 DT P OP2 sing N N 206 DT P "O5'" sing N N 207 DT OP2 HOP2 sing N N 208 DT "O5'" "C5'" sing N N 209 DT "C5'" "C4'" sing N N 210 DT "C5'" "H5'" sing N N 211 DT "C5'" "H5''" sing N N 212 DT "C4'" "O4'" sing N N 213 DT "C4'" "C3'" sing N N 214 DT "C4'" "H4'" sing N N 215 DT "O4'" "C1'" sing N N 216 DT "C3'" "O3'" sing N N 217 DT "C3'" "C2'" sing N N 218 DT "C3'" "H3'" sing N N 219 DT "O3'" "HO3'" sing N N 220 DT "C2'" "C1'" sing N N 221 DT "C2'" "H2'" sing N N 222 DT "C2'" "H2''" sing N N 223 DT "C1'" N1 sing N N 224 DT "C1'" "H1'" sing N N 225 DT N1 C2 sing N N 226 DT N1 C6 sing N N 227 DT C2 O2 doub N N 228 DT C2 N3 sing N N 229 DT N3 C4 sing N N 230 DT N3 H3 sing N N 231 DT C4 O4 doub N N 232 DT C4 C5 sing N N 233 DT C5 C7 sing N N 234 DT C5 C6 doub N N 235 DT C7 H71 sing N N 236 DT C7 H72 sing N N 237 DT C7 H73 sing N N 238 DT C6 H6 sing N N 239 HOH O H1 sing N N 240 HOH O H2 sing N N 241 RKP C1 N2 sing Y N 242 RKP C1 C5 doub Y N 243 RKP C1 C10 sing Y N 244 RKP N1 C10 sing Y N 245 RKP N1 C12 doub Y N 246 RKP C2 N2 doub Y N 247 RKP C2 C3 sing Y N 248 RKP C3 C4 doub Y N 249 RKP N3 C6 sing Y N 250 RKP N3 C15 doub Y N 251 RKP C4 C5 sing Y N 252 RKP N4 C7 sing Y N 253 RKP N4 C13 doub Y N 254 RKP C5 C6 sing Y N 255 RKP N5 C19 sing Y N 256 RKP N5 C20 doub Y N 257 RKP C6 C7 doub Y N 258 RKP C7 C8 sing Y N 259 RKP C8 C9 sing Y N 260 RKP C8 C10 doub Y N 261 RKP N8 C26 sing Y N 262 RKP N8 C28 doub Y N 263 RKP C9 C11 doub Y N 264 RKP N9 C29 sing Y N 265 RKP N9 C30 doub Y N 266 RKP C11 C12 sing Y N 267 RKP N12 C36 sing Y N 268 RKP N12 C38 doub Y N 269 RKP C13 C14 sing Y N 270 RKP C13 C15 sing Y N 271 RKP C14 C18 doub Y N 272 RKP C15 C16 sing Y N 273 RKP C16 C17 doub Y N 274 RKP C17 C18 sing Y N 275 RKP C19 C22 doub Y N 276 RKP C19 C26 sing Y N 277 RKP C20 C21 sing Y N 278 RKP C21 C41 doub Y N 279 RKP C22 C23 sing Y N 280 RKP C22 C41 sing Y N 281 RKP C23 C24 doub Y N 282 RKP C24 C25 sing Y N 283 RKP C25 C26 doub Y N 284 RKP C25 C42 sing Y N 285 RKP C27 C28 sing Y N 286 RKP C27 C42 doub Y N 287 RKP C29 C32 doub Y N 288 RKP C29 C36 sing Y N 289 RKP C30 C31 sing Y N 290 RKP C31 C43 doub Y N 291 RKP C32 C33 sing Y N 292 RKP C32 C43 sing Y N 293 RKP C33 C34 doub Y N 294 RKP C34 C35 sing Y N 295 RKP C35 C36 doub Y N 296 RKP C35 C44 sing Y N 297 RKP C37 C38 sing Y N 298 RKP C37 C44 doub Y N 299 RKP C2 H2 sing N N 300 RKP C3 H3 sing N N 301 RKP C4 H4 sing N N 302 RKP C9 H9 sing N N 303 RKP C11 H11 sing N N 304 RKP C12 H12 sing N N 305 RKP C14 H14 sing N N 306 RKP C16 H16 sing N N 307 RKP C17 H17 sing N N 308 RKP C18 H18 sing N N 309 RKP C20 H20 sing N N 310 RKP C21 H21 sing N N 311 RKP C23 H23 sing N N 312 RKP C24 H24 sing N N 313 RKP C27 H27 sing N N 314 RKP C28 H28 sing N N 315 RKP C30 H30 sing N N 316 RKP C31 H31 sing N N 317 RKP C33 H33 sing N N 318 RKP C34 H34 sing N N 319 RKP C37 H37 sing N N 320 RKP C38 H38 sing N N 321 RKP C41 H41 sing N N 322 RKP C42 H42 sing N N 323 RKP C43 H43 sing N N 324 RKP C44 H44 sing N N 325 RKP RU N1 sing N N 326 RKP RU N2 sing N N 327 RKP RU N5 sing N N 328 RKP RU N8 sing N N 329 RKP RU N9 sing N N 330 RKP RU N12 sing N N 331 # _ndb_struct_conf_na.entry_id 4JD8 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 6 1_555 0.109 -0.160 -0.010 -10.207 7.445 1.755 1 A_DA1:DT6_B A 1 ? B 6 ? 20 1 1 A DT 2 1_555 B DA 5 1_555 -0.127 -0.120 -0.009 11.815 9.408 2.394 2 A_DT2:DA5_B A 2 ? B 5 ? 20 1 1 A DG 3 1_555 B DC 4 1_555 -0.163 -0.108 -0.204 -1.886 10.615 0.747 3 A_DG3:DC4_B A 3 ? B 4 ? 19 1 1 A DC 4 1_555 B DG 3 1_555 0.361 -0.149 -0.330 16.740 1.365 -0.624 4 A_DC4:DG3_B A 4 ? B 3 ? 19 1 1 A DA 5 1_555 B DT 2 1_555 0.028 -0.108 0.038 -6.629 14.314 7.784 5 A_DA5:DT2_B A 5 ? B 2 ? 20 1 1 A DT 6 1_555 B DA 1 1_555 0.033 -0.146 -0.085 9.947 7.483 2.259 6 A_DT6:DA1_B A 6 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 6 1_555 A DT 2 1_555 B DA 5 1_555 0.841 -0.096 2.939 -0.746 5.093 26.161 -1.398 -1.998 2.844 11.116 1.627 26.654 1 AA_DA1DT2:DA5DT6_BB A 1 ? B 6 ? A 2 ? B 5 ? 1 A DT 2 1_555 B DA 5 1_555 A DG 3 1_555 B DC 4 1_555 0.089 1.866 6.876 9.373 1.741 30.259 2.735 3.507 6.698 3.235 -17.419 31.692 2 AA_DT2DG3:DC4DA5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A DG 3 1_555 B DC 4 1_555 A DC 4 1_555 B DG 3 1_555 -0.345 -0.086 2.880 1.299 5.955 20.209 -2.414 1.416 2.714 16.493 -3.597 21.099 3 AA_DG3DC4:DG3DC4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 A DC 4 1_555 B DG 3 1_555 A DA 5 1_555 B DT 2 1_555 -1.698 1.875 6.734 -13.114 6.033 22.684 0.501 -4.034 6.942 13.699 29.780 26.836 4 AA_DC4DA5:DT2DG3_BB A 4 ? B 3 ? A 5 ? B 2 ? 1 A DA 5 1_555 B DT 2 1_555 A DT 6 1_555 B DA 1 1_555 -0.473 -0.217 3.017 1.408 4.475 16.797 -3.212 2.347 2.815 14.945 -4.703 17.436 5 AA_DA5DT6:DA1DT2_BB A 5 ? B 2 ? A 6 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Delta-Ru(phen)2(dppz) complex' 0TN 3 'Lambda-Ru(phen)2(dppz) complex' RKP 4 'POTASSIUM ION' K 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4E87 _pdbx_initial_refinement_model.details ? #