HEADER HEME BINDING PROTEIN, TRANSPORT PROTEIN 27-FEB-13 4JES TITLE 1.6A RESOLUTION APO STRUCTURE OF THE HEMOPHORE HASA FROM YERSINIA TITLE 2 PESTIS (HEXAGONAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOPHORE HASA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SECRETED HEMOPHORE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: HASA, Y0314, YP_3127, YPO3922; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HEME BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.KUMAR,S.LOVELL,K.P.BATTAILE,M.RIVERA REVDAT 4 20-SEP-23 4JES 1 REMARK LINK REVDAT 3 15-NOV-17 4JES 1 REMARK REVDAT 2 29-MAY-13 4JES 1 JRNL REVDAT 1 24-APR-13 4JES 0 JRNL AUTH R.KUMAR,S.LOVELL,H.MATSUMURA,K.P.BATTAILE,P.MOENNE-LOCCOZ, JRNL AUTH 2 M.RIVERA JRNL TITL THE HEMOPHORE HASA FROM YERSINIA PESTIS (HASAYP) COORDINATES JRNL TITL 2 HEMIN WITH A SINGLE RESIDUE, TYR75, AND WITH MINIMAL JRNL TITL 3 CONFORMATIONAL CHANGE. JRNL REF BIOCHEMISTRY V. 52 2705 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23578210 JRNL DOI 10.1021/BI400280Z REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1148 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.720 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5458 - 4.3410 1.00 2634 131 0.1581 0.2054 REMARK 3 2 4.3410 - 3.4463 1.00 2611 124 0.1409 0.1550 REMARK 3 3 3.4463 - 3.0109 1.00 2579 130 0.1649 0.1974 REMARK 3 4 3.0109 - 2.7357 1.00 2590 144 0.1713 0.1923 REMARK 3 5 2.7357 - 2.5397 1.00 2567 143 0.1587 0.1874 REMARK 3 6 2.5397 - 2.3900 1.00 2593 123 0.1529 0.1789 REMARK 3 7 2.3900 - 2.2703 1.00 2563 140 0.1453 0.1530 REMARK 3 8 2.2703 - 2.1715 1.00 2588 145 0.1420 0.1714 REMARK 3 9 2.1715 - 2.0879 1.00 2561 132 0.1484 0.1788 REMARK 3 10 2.0879 - 2.0158 1.00 2593 134 0.1534 0.1790 REMARK 3 11 2.0158 - 1.9528 1.00 2569 142 0.1608 0.2143 REMARK 3 12 1.9528 - 1.8970 1.00 2571 141 0.1638 0.1893 REMARK 3 13 1.8970 - 1.8471 1.00 2549 144 0.1640 0.2109 REMARK 3 14 1.8471 - 1.8020 1.00 2567 140 0.1771 0.2000 REMARK 3 15 1.8020 - 1.7610 1.00 2553 161 0.2001 0.2176 REMARK 3 16 1.7610 - 1.7235 1.00 2550 149 0.2002 0.2370 REMARK 3 17 1.7235 - 1.6891 1.00 2611 119 0.2168 0.2367 REMARK 3 18 1.6891 - 1.6572 1.00 2521 150 0.2295 0.2443 REMARK 3 19 1.6572 - 1.6276 1.00 2583 128 0.2271 0.2772 REMARK 3 20 1.6276 - 1.6000 1.00 2554 141 0.2386 0.2552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2897 REMARK 3 ANGLE : 1.046 3895 REMARK 3 CHIRALITY : 0.083 405 REMARK 3 PLANARITY : 0.008 514 REMARK 3 DIHEDRAL : 14.926 1092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.5456 -18.0081 -5.6587 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.1752 REMARK 3 T33: 0.1756 T12: 0.0049 REMARK 3 T13: 0.0239 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.0926 L22: 1.4506 REMARK 3 L33: 2.2461 L12: 0.7549 REMARK 3 L13: 1.2064 L23: 0.1966 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.3221 S13: -0.1137 REMARK 3 S21: -0.2019 S22: 0.0305 S23: -0.0546 REMARK 3 S31: 0.1300 S32: 0.0910 S33: -0.0206 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.3688 -15.5573 -0.8437 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.1544 REMARK 3 T33: 0.1971 T12: -0.0313 REMARK 3 T13: -0.0051 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.2122 L22: 2.0612 REMARK 3 L33: 1.6372 L12: -0.5059 REMARK 3 L13: 0.7233 L23: -0.0572 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.0894 S13: -0.0944 REMARK 3 S21: -0.0614 S22: -0.0023 S23: 0.3077 REMARK 3 S31: 0.0344 S32: -0.1702 S33: 0.0194 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.1268 -5.3934 -8.6934 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.1922 REMARK 3 T33: 0.2572 T12: -0.0484 REMARK 3 T13: -0.0333 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 6.2632 L22: 4.3467 REMARK 3 L33: 3.2035 L12: -3.6784 REMARK 3 L13: -0.6633 L23: 0.6797 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: 0.5162 S13: 0.4758 REMARK 3 S21: -0.4543 S22: -0.0157 S23: 0.0414 REMARK 3 S31: -0.2344 S32: 0.0042 S33: 0.0085 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.8716 -6.0932 -5.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1505 REMARK 3 T33: 0.1684 T12: -0.0164 REMARK 3 T13: 0.0034 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.1876 L22: 4.3008 REMARK 3 L33: 6.9361 L12: 1.0991 REMARK 3 L13: 1.5690 L23: 5.4425 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.1245 S13: -0.0062 REMARK 3 S21: -0.2709 S22: 0.0271 S23: -0.1209 REMARK 3 S31: -0.1011 S32: -0.0568 S33: -0.0697 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.9764 -12.6038 6.4048 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1455 REMARK 3 T33: 0.1532 T12: -0.0110 REMARK 3 T13: -0.0138 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 4.7738 L22: 2.3271 REMARK 3 L33: 3.7464 L12: 0.7624 REMARK 3 L13: -0.5159 L23: -0.6796 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: -0.1139 S13: -0.0893 REMARK 3 S21: 0.0702 S22: -0.1427 S23: -0.2697 REMARK 3 S31: 0.0413 S32: 0.2972 S33: 0.1320 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.1551 -15.0337 31.4844 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.2746 REMARK 3 T33: 0.1700 T12: 0.0532 REMARK 3 T13: 0.0829 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 0.8122 L22: 1.5910 REMARK 3 L33: 2.3945 L12: 0.2330 REMARK 3 L13: -0.3204 L23: -1.0615 REMARK 3 S TENSOR REMARK 3 S11: -0.1438 S12: -0.5346 S13: -0.1685 REMARK 3 S21: 0.4507 S22: 0.1134 S23: 0.2404 REMARK 3 S31: 0.0626 S32: 0.0481 S33: -0.1512 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.6338 -35.6799 28.1723 REMARK 3 T TENSOR REMARK 3 T11: 0.3169 T22: 0.1840 REMARK 3 T33: 0.3498 T12: 0.0114 REMARK 3 T13: 0.0324 T23: 0.1327 REMARK 3 L TENSOR REMARK 3 L11: 3.5043 L22: 0.3479 REMARK 3 L33: 2.7004 L12: 0.9711 REMARK 3 L13: 0.0185 L23: -0.4557 REMARK 3 S TENSOR REMARK 3 S11: 0.1175 S12: -0.2538 S13: -0.4083 REMARK 3 S21: 0.5206 S22: 0.3227 S23: 0.6532 REMARK 3 S31: -0.0612 S32: -0.1985 S33: -0.0047 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.7914 -28.9096 31.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.2112 REMARK 3 T33: 0.2106 T12: 0.0039 REMARK 3 T13: 0.0412 T23: 0.0874 REMARK 3 L TENSOR REMARK 3 L11: 0.9942 L22: 0.7742 REMARK 3 L33: 1.4070 L12: -0.3281 REMARK 3 L13: 0.7842 L23: -0.5840 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.2828 S13: -0.1968 REMARK 3 S21: 0.2694 S22: 0.1246 S23: 0.2650 REMARK 3 S31: 0.1125 S32: -0.0685 S33: -0.1275 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.5265 -25.0188 23.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.1928 REMARK 3 T33: 0.2117 T12: -0.0087 REMARK 3 T13: 0.0142 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 1.9326 L22: 1.8162 REMARK 3 L33: 1.4612 L12: -0.1536 REMARK 3 L13: 0.7879 L23: -0.4294 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.0935 S13: -0.1434 REMARK 3 S21: 0.0813 S22: 0.0517 S23: 0.3084 REMARK 3 S31: 0.0722 S32: -0.1000 S33: -0.1562 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.4492 -25.2901 27.1467 REMARK 3 T TENSOR REMARK 3 T11: 0.2168 T22: 0.4812 REMARK 3 T33: 0.2970 T12: -0.0006 REMARK 3 T13: -0.0717 T23: 0.2060 REMARK 3 L TENSOR REMARK 3 L11: 3.4222 L22: 1.6242 REMARK 3 L33: 1.5564 L12: -1.5706 REMARK 3 L13: 2.0722 L23: -0.4284 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: -0.0696 S13: -0.0051 REMARK 3 S21: 0.2829 S22: -0.5157 S23: -0.6493 REMARK 3 S31: -0.0422 S32: 1.0659 S33: 0.3842 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.2454 -22.9240 35.1025 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.3575 REMARK 3 T33: 0.2031 T12: -0.0898 REMARK 3 T13: -0.0413 T23: 0.1152 REMARK 3 L TENSOR REMARK 3 L11: 2.2436 L22: 3.4510 REMARK 3 L33: 3.6646 L12: -1.1113 REMARK 3 L13: 1.1975 L23: 0.7116 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.8341 S13: -0.4873 REMARK 3 S21: 0.7855 S22: -0.0931 S23: -0.2444 REMARK 3 S31: -0.5665 S32: 0.3935 S33: 0.1411 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.7190 -12.7656 31.7147 REMARK 3 T TENSOR REMARK 3 T11: 0.2681 T22: 0.2287 REMARK 3 T33: 0.1208 T12: -0.0157 REMARK 3 T13: -0.0491 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 8.9367 L22: 5.4768 REMARK 3 L33: 8.4634 L12: 2.5634 REMARK 3 L13: -7.1396 L23: -5.2200 REMARK 3 S TENSOR REMARK 3 S11: -0.1483 S12: -0.4518 S13: 0.2228 REMARK 3 S21: 0.5649 S22: 0.0221 S23: -0.1515 REMARK 3 S31: -0.2910 S32: 0.0115 S33: 0.1340 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1308 -6.9140 20.1714 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1177 REMARK 3 T33: 0.1324 T12: 0.0041 REMARK 3 T13: 0.0227 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.6711 L22: 5.3027 REMARK 3 L33: 4.1583 L12: 0.0260 REMARK 3 L13: 0.5673 L23: 0.3097 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: -0.1218 S13: 0.3201 REMARK 3 S21: 0.0961 S22: -0.0831 S23: 0.2787 REMARK 3 S31: -0.2249 S32: -0.0944 S33: 0.1812 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000077954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 65.013 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.01257 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM MALONATE, 0.1 HEPES, 0.5% REMARK 280 (V/V) JEFFAMINE ED-2001, PH 7.0, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.62750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.62750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.62750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C TAM B 205 LIES ON A SPECIAL POSITION. REMARK 375 N TAM B 205 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 103 REMARK 465 SER A 104 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 TYR A 183 REMARK 465 MET A 184 REMARK 465 SER A 185 REMARK 465 ASP A 186 REMARK 465 ALA A 187 REMARK 465 PRO A 188 REMARK 465 MET A 189 REMARK 465 VAL A 190 REMARK 465 ASP A 191 REMARK 465 THR A 192 REMARK 465 VAL A 193 REMARK 465 MET B 1 REMARK 465 SER B 181 REMARK 465 GLY B 182 REMARK 465 TYR B 183 REMARK 465 MET B 184 REMARK 465 SER B 185 REMARK 465 ASP B 186 REMARK 465 ALA B 187 REMARK 465 PRO B 188 REMARK 465 MET B 189 REMARK 465 VAL B 190 REMARK 465 ASP B 191 REMARK 465 THR B 192 REMARK 465 VAL B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 36 CD OE1 OE2 REMARK 470 ARG A 40 CD NE CZ NH1 NH2 REMARK 470 GLU A 124 OE1 OE2 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 ARG B 40 CD NE CZ NH1 NH2 REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 GLU B 133 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C TAM B 205 C2 TAM B 205 2535 1.52 REMARK 500 C2 TAM B 205 C2 TAM B 205 2535 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 47.80 -80.67 REMARK 500 PHE A 77 -139.77 53.92 REMARK 500 ASP A 95 66.12 69.19 REMARK 500 PHE B 77 -145.49 57.81 REMARK 500 ASP B 95 63.54 67.51 REMARK 500 SER B 127 -27.53 -36.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ATOMS N AND C OF THE TAM LIGAND RESIDE ON A SPECIAL POSITION REMARK 600 (CRYSTALLOGRAPHIC 3-FOLD). THE COMPLETE TAM MOLECULE IS GENERATED REMARK 600 BY APPLYING THE FOLLOWING SYMMETRY OPERATORS: -Y, X-Y, Z + (0-10) REMARK 600 AND -X+Y, -X, Z + (-1 -1 0). REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 P6G B 203 O19 REMARK 620 2 P6G B 203 O13 129.9 REMARK 620 3 P6G B 203 O10 157.8 71.6 REMARK 620 4 P6G B 203 O16 66.5 66.6 135.6 REMARK 620 5 P6G B 203 O7 92.2 132.1 65.8 158.5 REMARK 620 6 HOH B 403 O 83.4 84.5 94.6 95.5 78.3 REMARK 620 7 HOH B 417 O 90.3 107.2 87.5 91.1 92.0 168.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JER RELATED DB: PDB REMARK 900 RELATED ID: 4JET RELATED DB: PDB DBREF 4JES A 1 193 UNP Q7CL15 Q7CL15_YERPE 1 193 DBREF 4JES B 1 193 UNP Q7CL15 Q7CL15_YERPE 1 193 SEQRES 1 A 193 MET SER THR THR ILE GLN TYR ASN SER ASN TYR ALA ASP SEQRES 2 A 193 TYR SER ILE SER SER TYR LEU ARG GLU TRP ALA ASN ASN SEQRES 3 A 193 PHE GLY ASP ILE ASP GLN ALA PRO ALA GLU THR LYS ASP SEQRES 4 A 193 ARG GLY SER PHE SER GLY SER SER THR LEU PHE SER GLY SEQRES 5 A 193 THR GLN TYR ALA ILE GLY SER SER HIS SER ASN PRO GLU SEQRES 6 A 193 GLY MET ILE ALA GLU GLY ASP LEU LYS TYR SER PHE MET SEQRES 7 A 193 PRO GLN HIS THR PHE HIS GLY GLN ILE ASP THR LEU GLN SEQRES 8 A 193 PHE GLY LYS ASP LEU ALA THR ASN ALA GLY GLY PRO SER SEQRES 9 A 193 ALA GLY LYS HIS LEU GLU LYS ILE ASP ILE THR PHE ASN SEQRES 10 A 193 GLU LEU ASP LEU SER GLY GLU PHE ASP SER GLY LYS SER SEQRES 11 A 193 MET THR GLU ASN HIS GLN GLY ASP MET HIS LYS SER VAL SEQRES 12 A 193 ARG GLY LEU MET LYS GLY ASN PRO ASP PRO MET LEU GLU SEQRES 13 A 193 VAL MET LYS ALA LYS GLY ILE ASN VAL ASP THR ALA PHE SEQRES 14 A 193 LYS ASP LEU SER ILE ALA SER GLN TYR PRO ASP SER GLY SEQRES 15 A 193 TYR MET SER ASP ALA PRO MET VAL ASP THR VAL SEQRES 1 B 193 MET SER THR THR ILE GLN TYR ASN SER ASN TYR ALA ASP SEQRES 2 B 193 TYR SER ILE SER SER TYR LEU ARG GLU TRP ALA ASN ASN SEQRES 3 B 193 PHE GLY ASP ILE ASP GLN ALA PRO ALA GLU THR LYS ASP SEQRES 4 B 193 ARG GLY SER PHE SER GLY SER SER THR LEU PHE SER GLY SEQRES 5 B 193 THR GLN TYR ALA ILE GLY SER SER HIS SER ASN PRO GLU SEQRES 6 B 193 GLY MET ILE ALA GLU GLY ASP LEU LYS TYR SER PHE MET SEQRES 7 B 193 PRO GLN HIS THR PHE HIS GLY GLN ILE ASP THR LEU GLN SEQRES 8 B 193 PHE GLY LYS ASP LEU ALA THR ASN ALA GLY GLY PRO SER SEQRES 9 B 193 ALA GLY LYS HIS LEU GLU LYS ILE ASP ILE THR PHE ASN SEQRES 10 B 193 GLU LEU ASP LEU SER GLY GLU PHE ASP SER GLY LYS SER SEQRES 11 B 193 MET THR GLU ASN HIS GLN GLY ASP MET HIS LYS SER VAL SEQRES 12 B 193 ARG GLY LEU MET LYS GLY ASN PRO ASP PRO MET LEU GLU SEQRES 13 B 193 VAL MET LYS ALA LYS GLY ILE ASN VAL ASP THR ALA PHE SEQRES 14 B 193 LYS ASP LEU SER ILE ALA SER GLN TYR PRO ASP SER GLY SEQRES 15 B 193 TYR MET SER ASP ALA PRO MET VAL ASP THR VAL HET MLI A 201 7 HET P6G A 202 19 HET NA B 201 1 HET MLI B 202 7 HET P6G B 203 19 HET P6G B 204 19 HET TAM B 205 5 HETNAM MLI MALONATE ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM NA SODIUM ION HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 MLI 2(C3 H2 O4 2-) FORMUL 4 P6G 3(C12 H26 O7) FORMUL 5 NA NA 1+ FORMUL 9 TAM C7 H17 N O3 FORMUL 10 HOH *259(H2 O) HELIX 1 1 SER A 9 ALA A 12 5 4 HELIX 2 2 SER A 15 GLY A 28 1 14 HELIX 3 3 ASP A 29 ALA A 33 5 5 HELIX 4 4 PRO A 34 LYS A 38 5 5 HELIX 5 5 SER A 130 HIS A 135 1 6 HELIX 6 6 GLY A 137 LYS A 148 1 12 HELIX 7 7 PRO A 151 LYS A 161 1 11 HELIX 8 8 ALA A 168 LEU A 172 5 5 HELIX 9 9 SER B 9 ALA B 12 5 4 HELIX 10 10 SER B 15 GLY B 28 1 14 HELIX 11 11 ASP B 29 ALA B 33 5 5 HELIX 12 12 PRO B 34 LYS B 38 5 5 HELIX 13 13 GLY B 102 ALA B 105 5 4 HELIX 14 14 SER B 130 HIS B 135 1 6 HELIX 15 15 GLY B 137 LYS B 148 1 12 HELIX 16 16 PRO B 151 LYS B 161 1 11 HELIX 17 17 ALA B 168 LEU B 172 5 5 SHEET 1 A 5 SER A 42 SER A 44 0 SHEET 2 A 5 SER A 51 GLY A 58 -1 O ALA A 56 N SER A 42 SHEET 3 A 5 GLU A 65 TYR A 75 -1 O ALA A 69 N TYR A 55 SHEET 4 A 5 PHE A 83 THR A 98 -1 O GLN A 91 N ILE A 68 SHEET 5 A 5 LEU A 121 GLY A 123 -1 O LEU A 121 N ILE A 87 SHEET 1 B 7 SER A 42 SER A 44 0 SHEET 2 B 7 SER A 51 GLY A 58 -1 O ALA A 56 N SER A 42 SHEET 3 B 7 GLU A 65 TYR A 75 -1 O ALA A 69 N TYR A 55 SHEET 4 B 7 PHE A 83 THR A 98 -1 O GLN A 91 N ILE A 68 SHEET 5 B 7 LYS A 107 ASN A 117 -1 O PHE A 116 N LEU A 90 SHEET 6 B 7 THR A 4 TYR A 7 -1 N THR A 4 O ASN A 117 SHEET 7 B 7 ALA A 175 GLN A 177 1 O SER A 176 N ILE A 5 SHEET 1 C 7 SER B 42 SER B 44 0 SHEET 2 C 7 SER B 51 GLY B 58 -1 O THR B 53 N SER B 44 SHEET 3 C 7 GLU B 65 TYR B 75 -1 O ALA B 69 N TYR B 55 SHEET 4 C 7 PHE B 83 THR B 98 -1 O HIS B 84 N LYS B 74 SHEET 5 C 7 LYS B 107 GLY B 123 -1 O LEU B 121 N ILE B 87 SHEET 6 C 7 THR B 4 TYR B 7 -1 N THR B 4 O ASN B 117 SHEET 7 C 7 ALA B 175 GLN B 177 1 O SER B 176 N ILE B 5 LINK NA NA B 201 O19 P6G B 203 1555 1555 2.37 LINK NA NA B 201 O13 P6G B 203 1555 1555 2.39 LINK NA NA B 201 O10 P6G B 203 1555 1555 2.44 LINK NA NA B 201 O16 P6G B 203 1555 1555 2.64 LINK NA NA B 201 O7 P6G B 203 1555 1555 2.82 LINK NA NA B 201 O HOH B 403 1555 1555 2.40 LINK NA NA B 201 O HOH B 417 1555 1555 2.48 CISPEP 1 MET A 78 PRO A 79 0 -3.10 CISPEP 2 MET B 78 PRO B 79 0 3.00 SITE 1 AC1 7 SER A 76 HIS A 84 ALA A 97 THR A 98 SITE 2 AC1 7 PHE A 125 HOH A 436 HOH A 440 SITE 1 AC2 12 ARG A 40 GLY A 41 PHE A 43 LEU A 49 SITE 2 AC2 12 PHE A 50 TYR A 55 HIS A 81 PHE A 83 SITE 3 AC2 12 HIS A 140 ARG A 144 MET A 147 HOH A 427 SITE 1 AC3 3 P6G B 203 HOH B 403 HOH B 417 SITE 1 AC4 8 SER A 173 ILE A 174 HOH A 312 SER B 173 SITE 2 AC4 8 ILE B 174 HOH B 303 HOH B 404 HOH B 405 SITE 1 AC5 6 THR B 53 GLU B 70 NA B 201 HOH B 341 SITE 2 AC5 6 HOH B 356 HOH B 418 SITE 1 AC6 7 PHE B 43 TYR B 55 TYR B 75 SER B 76 SITE 2 AC6 7 PHE B 83 HIS B 140 ARG B 144 SITE 1 AC7 4 THR B 48 LEU B 49 PHE B 50 HOH B 410 CRYST1 75.071 75.071 129.255 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013321 0.007691 0.000000 0.00000 SCALE2 0.000000 0.015381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007737 0.00000