data_4JF2 # _entry.id 4JF2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JF2 pdb_00004jf2 10.2210/pdb4jf2/pdb NDB NA2296 ? ? RCSB RCSB077964 ? ? WWPDB D_1000077964 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-17 2 'Structure model' 1 1 2013-04-24 3 'Structure model' 1 2 2013-06-12 4 'Structure model' 1 3 2017-11-15 5 'Structure model' 1 4 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' pdbx_struct_special_symmetry 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 29 5 'Structure model' '_pdbx_struct_conn_angle.value' 30 5 'Structure model' '_struct_conn.pdbx_dist_value' 31 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 32 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 37 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 44 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 45 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4JF2 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-27 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liberman, J.A.' 1 'Wedekind, J.E.' 2 # _citation.id primary _citation.title 'Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 9 _citation.page_first 353 _citation.page_last 355 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23584677 _citation.pdbx_database_id_DOI 10.1038/nchembio.1231 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liberman, J.A.' 1 ? primary 'Salim, M.' 2 ? primary 'Krucinska, J.' 3 ? primary 'Wedekind, J.E.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'PreQ1-II Riboswitch' 24850.590 1 ? ? ? ? 2 non-polymer syn 7-DEAZA-7-AMINOMETHYL-GUANINE 179.179 1 ? ? ? ? 3 non-polymer syn 'CESIUM ION' 132.905 15 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 5 water nat water 18.015 152 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAG A ; _entity_poly.pdbx_seq_one_letter_code_can GGAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAGA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 7-DEAZA-7-AMINOMETHYL-GUANINE PRF 3 'CESIUM ION' CS 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 A n 1 5 C n 1 6 C n 1 7 G n 1 8 C n 1 9 G n 1 10 A n 1 11 A n 1 12 A n 1 13 G n 1 14 C n 1 15 G n 1 16 G n 1 17 U n 1 18 U n 1 19 C n 1 20 C n 1 21 A n 1 22 C n 1 23 G n 1 24 A n 1 25 C n 1 26 G n 1 27 A n 1 28 U n 1 29 A n 1 30 C n 1 31 U n 1 32 U n 1 33 A n 1 34 U n 1 35 U n 1 36 U n 1 37 C n 1 38 C n 1 39 U n 1 40 U n 1 41 U n 1 42 G n 1 43 A n 1 44 U n 1 45 C n 1 46 G n 1 47 U n 1 48 C n 1 49 G n 1 50 U n 1 51 U n 1 52 A n 1 53 U n 1 54 U n 1 55 A n 1 56 C n 1 57 U n 1 58 G n 1 59 G n 1 60 C n 1 61 U n 1 62 U n 1 63 C n 1 64 G n 1 65 G n 1 66 C n 1 67 C n 1 68 A n 1 69 C n 1 70 A n 1 71 A n 1 72 A n 1 73 G n 1 74 G n 1 75 A n 1 76 G n 1 77 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Lactobacillus rhamnosus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 47715 _pdbx_entity_src_syn.details 'In vitro transcription' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CS non-polymer . 'CESIUM ION' ? 'Cs 1' 132.905 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PRF non-polymer . 7-DEAZA-7-AMINOMETHYL-GUANINE ? 'C7 H9 N5 O' 179.179 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 A 27 27 27 A A A . n A 1 28 U 28 28 28 U U A . n A 1 29 A 29 29 29 A A A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 U 32 32 32 U U A . n A 1 33 A 33 33 33 A A A . n A 1 34 U 34 34 34 U U A . n A 1 35 U 35 35 35 U U A . n A 1 36 U 36 36 36 U U A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 U 39 39 39 U U A . n A 1 40 U 40 40 40 U U A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 A 43 43 43 A A A . n A 1 44 U 44 44 44 U U A . n A 1 45 C 45 45 45 C C A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 C 48 48 48 C C A . n A 1 49 G 49 49 49 G G A . n A 1 50 U 50 50 50 U U A . n A 1 51 U 51 51 51 U U A . n A 1 52 A 52 52 52 A A A . n A 1 53 U 53 53 53 U U A . n A 1 54 U 54 54 54 U U A . n A 1 55 A 55 55 55 A A A . n A 1 56 C 56 56 56 C C A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 G 59 59 59 G G A . n A 1 60 C 60 60 60 C C A . n A 1 61 U 61 61 61 U U A . n A 1 62 U 62 62 62 U U A . n A 1 63 C 63 63 63 C C A . n A 1 64 G 64 64 64 G G A . n A 1 65 G 65 65 65 G G A . n A 1 66 C 66 66 66 C C A . n A 1 67 C 67 67 67 C C A . n A 1 68 A 68 68 68 A A A . n A 1 69 C 69 69 69 C C A . n A 1 70 A 70 70 70 A A A . n A 1 71 A 71 71 71 A A A . n A 1 72 A 72 72 72 A A A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 G 76 76 76 G G A . n A 1 77 A 77 77 77 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRF 1 101 1 PRF PRF A . C 3 CS 1 102 1 CS CS A . D 3 CS 1 103 2 CS CS A . E 3 CS 1 104 3 CS CS A . F 3 CS 1 105 4 CS CS A . G 3 CS 1 106 5 CS CS A . H 3 CS 1 107 6 CS CS A . I 3 CS 1 108 7 CS CS A . J 3 CS 1 109 8 CS CS A . K 3 CS 1 110 9 CS CS A . L 3 CS 1 111 10 CS CS A . M 3 CS 1 112 11 CS CS A . N 3 CS 1 113 12 CS CS A . O 3 CS 1 114 13 CS CS A . P 3 CS 1 115 14 CS CS A . Q 3 CS 1 116 15 CS CS A . R 4 MG 1 117 16 MG MG A . S 4 MG 1 118 17 MG MG A . T 4 MG 1 119 18 MG MG A . U 4 MG 1 120 19 MG MG A . V 5 HOH 1 201 1 HOH HOH A . V 5 HOH 2 202 2 HOH HOH A . V 5 HOH 3 203 3 HOH HOH A . V 5 HOH 4 204 4 HOH HOH A . V 5 HOH 5 205 5 HOH HOH A . V 5 HOH 6 206 6 HOH HOH A . V 5 HOH 7 207 7 HOH HOH A . V 5 HOH 8 208 8 HOH HOH A . V 5 HOH 9 209 9 HOH HOH A . V 5 HOH 10 210 10 HOH HOH A . V 5 HOH 11 211 11 HOH HOH A . V 5 HOH 12 212 12 HOH HOH A . V 5 HOH 13 213 13 HOH HOH A . V 5 HOH 14 214 14 HOH HOH A . V 5 HOH 15 215 15 HOH HOH A . V 5 HOH 16 216 16 HOH HOH A . V 5 HOH 17 217 17 HOH HOH A . V 5 HOH 18 218 18 HOH HOH A . V 5 HOH 19 219 19 HOH HOH A . V 5 HOH 20 220 20 HOH HOH A . V 5 HOH 21 221 21 HOH HOH A . V 5 HOH 22 222 22 HOH HOH A . V 5 HOH 23 223 23 HOH HOH A . V 5 HOH 24 224 24 HOH HOH A . V 5 HOH 25 225 25 HOH HOH A . V 5 HOH 26 226 26 HOH HOH A . V 5 HOH 27 227 27 HOH HOH A . V 5 HOH 28 228 28 HOH HOH A . V 5 HOH 29 229 29 HOH HOH A . V 5 HOH 30 230 30 HOH HOH A . V 5 HOH 31 231 31 HOH HOH A . V 5 HOH 32 232 32 HOH HOH A . V 5 HOH 33 233 33 HOH HOH A . V 5 HOH 34 234 34 HOH HOH A . V 5 HOH 35 235 35 HOH HOH A . V 5 HOH 36 236 36 HOH HOH A . V 5 HOH 37 237 37 HOH HOH A . V 5 HOH 38 238 38 HOH HOH A . V 5 HOH 39 239 39 HOH HOH A . V 5 HOH 40 240 40 HOH HOH A . V 5 HOH 41 241 41 HOH HOH A . V 5 HOH 42 242 42 HOH HOH A . V 5 HOH 43 243 43 HOH HOH A . V 5 HOH 44 244 44 HOH HOH A . V 5 HOH 45 245 45 HOH HOH A . V 5 HOH 46 246 46 HOH HOH A . V 5 HOH 47 247 47 HOH HOH A . V 5 HOH 48 248 48 HOH HOH A . V 5 HOH 49 249 49 HOH HOH A . V 5 HOH 50 250 50 HOH HOH A . V 5 HOH 51 251 51 HOH HOH A . V 5 HOH 52 252 52 HOH HOH A . V 5 HOH 53 253 53 HOH HOH A . V 5 HOH 54 254 54 HOH HOH A . V 5 HOH 55 255 55 HOH HOH A . V 5 HOH 56 256 56 HOH HOH A . V 5 HOH 57 257 57 HOH HOH A . V 5 HOH 58 258 58 HOH HOH A . V 5 HOH 59 259 59 HOH HOH A . V 5 HOH 60 260 60 HOH HOH A . V 5 HOH 61 261 61 HOH HOH A . V 5 HOH 62 262 62 HOH HOH A . V 5 HOH 63 263 63 HOH HOH A . V 5 HOH 64 264 64 HOH HOH A . V 5 HOH 65 265 65 HOH HOH A . V 5 HOH 66 266 66 HOH HOH A . V 5 HOH 67 267 67 HOH HOH A . V 5 HOH 68 268 68 HOH HOH A . V 5 HOH 69 269 69 HOH HOH A . V 5 HOH 70 270 70 HOH HOH A . V 5 HOH 71 271 71 HOH HOH A . V 5 HOH 72 272 72 HOH HOH A . V 5 HOH 73 273 73 HOH HOH A . V 5 HOH 74 274 74 HOH HOH A . V 5 HOH 75 275 75 HOH HOH A . V 5 HOH 76 276 76 HOH HOH A . V 5 HOH 77 277 77 HOH HOH A . V 5 HOH 78 278 78 HOH HOH A . V 5 HOH 79 279 79 HOH HOH A . V 5 HOH 80 280 80 HOH HOH A . V 5 HOH 81 281 81 HOH HOH A . V 5 HOH 82 282 82 HOH HOH A . V 5 HOH 83 283 83 HOH HOH A . V 5 HOH 84 284 84 HOH HOH A . V 5 HOH 85 285 85 HOH HOH A . V 5 HOH 86 286 86 HOH HOH A . V 5 HOH 87 287 87 HOH HOH A . V 5 HOH 88 288 88 HOH HOH A . V 5 HOH 89 289 89 HOH HOH A . V 5 HOH 90 290 90 HOH HOH A . V 5 HOH 91 291 91 HOH HOH A . V 5 HOH 92 292 92 HOH HOH A . V 5 HOH 93 293 93 HOH HOH A . V 5 HOH 94 294 94 HOH HOH A . V 5 HOH 95 295 95 HOH HOH A . V 5 HOH 96 296 96 HOH HOH A . V 5 HOH 97 297 97 HOH HOH A . V 5 HOH 98 298 98 HOH HOH A . V 5 HOH 99 299 99 HOH HOH A . V 5 HOH 100 300 100 HOH HOH A . V 5 HOH 101 301 101 HOH HOH A . V 5 HOH 102 302 102 HOH HOH A . V 5 HOH 103 303 103 HOH HOH A . V 5 HOH 104 304 104 HOH HOH A . V 5 HOH 105 305 105 HOH HOH A . V 5 HOH 106 306 106 HOH HOH A . V 5 HOH 107 307 107 HOH HOH A . V 5 HOH 108 308 108 HOH HOH A . V 5 HOH 109 309 109 HOH HOH A . V 5 HOH 110 310 110 HOH HOH A . V 5 HOH 111 311 111 HOH HOH A . V 5 HOH 112 312 112 HOH HOH A . V 5 HOH 113 313 113 HOH HOH A . V 5 HOH 114 314 114 HOH HOH A . V 5 HOH 115 315 115 HOH HOH A . V 5 HOH 116 316 116 HOH HOH A . V 5 HOH 117 317 117 HOH HOH A . V 5 HOH 118 318 118 HOH HOH A . V 5 HOH 119 319 119 HOH HOH A . V 5 HOH 120 320 120 HOH HOH A . V 5 HOH 121 321 121 HOH HOH A . V 5 HOH 122 322 122 HOH HOH A . V 5 HOH 123 323 123 HOH HOH A . V 5 HOH 124 324 124 HOH HOH A . V 5 HOH 125 325 125 HOH HOH A . V 5 HOH 126 326 126 HOH HOH A . V 5 HOH 127 327 127 HOH HOH A . V 5 HOH 128 328 128 HOH HOH A . V 5 HOH 129 329 129 HOH HOH A . V 5 HOH 130 330 130 HOH HOH A . V 5 HOH 131 331 131 HOH HOH A . V 5 HOH 132 332 132 HOH HOH A . V 5 HOH 133 333 133 HOH HOH A . V 5 HOH 134 334 134 HOH HOH A . V 5 HOH 135 335 135 HOH HOH A . V 5 HOH 136 336 136 HOH HOH A . V 5 HOH 137 337 137 HOH HOH A . V 5 HOH 138 338 138 HOH HOH A . V 5 HOH 139 339 139 HOH HOH A . V 5 HOH 140 340 140 HOH HOH A . V 5 HOH 141 341 141 HOH HOH A . V 5 HOH 142 342 142 HOH HOH A . V 5 HOH 143 343 143 HOH HOH A . V 5 HOH 144 344 144 HOH HOH A . V 5 HOH 145 345 145 HOH HOH A . V 5 HOH 146 346 146 HOH HOH A . V 5 HOH 147 347 147 HOH HOH A . V 5 HOH 148 348 148 HOH HOH A . V 5 HOH 149 349 149 HOH HOH A . V 5 HOH 150 350 150 HOH HOH A . V 5 HOH 151 351 151 HOH HOH A . V 5 HOH 152 352 152 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX 1.8.2_1290 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 6 PHENIX . ? ? ? ? phasing ? ? ? # _cell.length_a 58.036 _cell.length_b 85.972 _cell.length_c 98.120 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4JF2 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 4JF2 _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4JF2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '14.8% PEG 6000, 160 mM MgCl2, 50 mM Na-cacodylate pH 6.0, 1 mM spermine, 150 mM CsCl, Vapor Diffusion, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type Q315R _diffrn_detector.pdbx_collection_date 2012-03-18 _diffrn_detector.details 'Rh coated flat mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol SINGLE _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.127 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_wavelength_list 1.127 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 # _reflns.entry_id 4JF2 _reflns.d_resolution_high 2.200 _reflns.d_resolution_low 50.000 _reflns.number_obs 12133 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_netI_over_sigmaI 22.300 _reflns.pdbx_chi_squared 1.010 _reflns.pdbx_redundancy 4.100 _reflns.percent_possible_obs 94.500 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 38.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.200 2.280 ? ? ? 0.281 ? ? 1.072 3.100 ? 849 67.200 1 1 2.280 2.370 ? ? ? 0.282 ? ? 1.008 3.800 ? 1098 86.000 2 1 2.370 2.480 ? ? ? 0.204 ? ? 0.998 4.400 ? 1244 99.800 3 1 2.480 2.610 ? ? ? 0.145 ? ? 0.997 4.400 ? 1266 99.800 4 1 2.610 2.770 ? ? ? 0.108 ? ? 1.030 4.300 ? 1262 99.200 5 1 2.770 2.990 ? ? ? 0.068 ? ? 1.003 4.400 ? 1255 99.900 6 1 2.990 3.290 ? ? ? 0.043 ? ? 1.029 4.400 ? 1282 99.500 7 1 3.290 3.760 ? ? ? 0.045 ? ? 0.985 4.200 ? 1267 98.900 8 1 3.760 4.740 ? ? ? 0.040 ? ? 0.984 4.200 ? 1297 99.100 9 1 4.740 50.000 ? ? ? 0.039 ? ? 1.027 3.900 ? 1313 95.800 10 1 # _refine.entry_id 4JF2 _refine.ls_d_res_high 2.2800 _refine.ls_d_res_low 25.6950 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.6100 _refine.ls_number_reflns_obs 11247 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1977 _refine.ls_R_factor_R_work 0.1925 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2442 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9300 _refine.ls_number_reflns_R_free 1117 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 30.5860 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3200 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 0.9000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.6000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7879 _refine.B_iso_max 138.810 _refine.B_iso_min 5.170 _refine.pdbx_overall_phase_error 27.1400 _refine.occupancy_max 1.000 _refine.occupancy_min 0.200 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4JF2 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1644 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 1828 _refine_hist.d_res_high 2.2800 _refine_hist.d_res_low 25.6950 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1880 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2935 1.368 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 384 0.053 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 78 0.008 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 925 14.620 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.2801 2.3838 8 88.0000 1132 . 0.2319 0.3250 . 119 . 1251 . . 'X-RAY DIFFRACTION' 2.3838 2.5094 8 100.0000 1260 . 0.2341 0.3219 . 141 . 1401 . . 'X-RAY DIFFRACTION' 2.5094 2.6665 8 100.0000 1279 . 0.2440 0.3698 . 140 . 1419 . . 'X-RAY DIFFRACTION' 2.6665 2.8721 8 99.0000 1277 . 0.2424 0.2930 . 141 . 1418 . . 'X-RAY DIFFRACTION' 2.8721 3.1607 8 100.0000 1273 . 0.1923 0.2804 . 142 . 1415 . . 'X-RAY DIFFRACTION' 3.1607 3.6170 8 99.0000 1282 . 0.1616 0.2006 . 144 . 1426 . . 'X-RAY DIFFRACTION' 3.6170 4.5529 8 99.0000 1291 . 0.1527 0.1841 . 142 . 1433 . . 'X-RAY DIFFRACTION' 4.5529 25.6971 8 97.0000 1336 . 0.2040 0.2396 . 148 . 1484 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JF2 _struct.title 'Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JF2 _struct_keywords.text 'Riboswitch, H-type Pseudoknot, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4JF2 _struct_ref.pdbx_db_accession 4JF2 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAGA _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JF2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 77 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4JF2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 77 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 77 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.600 ? ? metalc1 metalc ? ? A GTP 1 O1G ? ? ? 1_555 I CS . CS ? ? A GTP 1 A CS 108 1_555 ? ? ? ? ? ? ? 3.086 ? ? metalc2 metalc ? ? A GTP 1 O3B ? ? ? 1_555 I CS . CS ? ? A GTP 1 A CS 108 1_555 ? ? ? ? ? ? ? 3.380 ? ? metalc3 metalc ? ? A GTP 1 O3G ? ? ? 1_555 P CS . CS ? ? A GTP 1 A CS 115 1_555 ? ? ? ? ? ? ? 3.302 ? ? metalc4 metalc ? ? A GTP 1 O1A ? ? ? 1_555 Q CS . CS ? ? A GTP 1 A CS 116 1_555 ? ? ? ? ? ? ? 3.214 ? ? metalc5 metalc ? ? A GTP 1 O2G ? ? ? 1_555 Q CS . CS ? ? A GTP 1 A CS 116 1_555 ? ? ? ? ? ? ? 3.321 ? ? metalc6 metalc ? ? A C 5 O2 ? ? ? 1_555 F CS . CS ? ? A C 5 A CS 105 1_555 ? ? ? ? ? ? ? 3.077 ? ? metalc7 metalc ? ? A C 5 "O2'" ? ? ? 1_555 F CS . CS ? ? A C 5 A CS 105 1_555 ? ? ? ? ? ? ? 3.087 ? ? metalc8 metalc ? ? A C 6 O2 ? ? ? 1_555 K CS . CS ? ? A C 6 A CS 110 1_555 ? ? ? ? ? ? ? 2.984 ? ? metalc9 metalc ? ? A C 6 "O2'" ? ? ? 1_555 K CS . CS ? ? A C 6 A CS 110 1_555 ? ? ? ? ? ? ? 3.247 ? ? metalc10 metalc ? ? A G 9 "O3'" ? ? ? 1_555 C CS . CS ? ? A G 9 A CS 102 1_555 ? ? ? ? ? ? ? 3.203 ? ? metalc11 metalc ? ? A A 10 N7 ? ? ? 1_555 C CS . CS ? ? A A 10 A CS 102 1_555 ? ? ? ? ? ? ? 3.181 ? ? metalc12 metalc ? ? A A 10 OP1 ? ? ? 1_555 C CS . CS ? ? A A 10 A CS 102 1_555 ? ? ? ? ? ? ? 3.383 ? ? metalc13 metalc ? ? A A 10 OP1 ? ? ? 1_555 U MG . MG ? ? A A 10 A MG 120 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc14 metalc ? ? A A 11 "O2'" ? ? ? 1_555 O CS . CS ? ? A A 11 A CS 114 1_555 ? ? ? ? ? ? ? 3.174 ? ? metalc15 metalc ? ? A G 16 O6 ? ? ? 1_555 P CS . CS ? ? A G 16 A CS 115 1_555 ? ? ? ? ? ? ? 3.368 ? ? metalc16 metalc ? ? A U 17 O2 ? ? ? 1_555 F CS . CS ? ? A U 17 A CS 105 1_555 ? ? ? ? ? ? ? 3.276 ? ? metalc17 metalc ? ? A U 17 O4 ? ? ? 1_555 P CS . CS ? ? A U 17 A CS 115 1_555 ? ? ? ? ? ? ? 2.995 ? ? metalc18 metalc ? ? A C 22 "O3'" ? ? ? 1_555 N CS . CS ? ? A C 22 A CS 113 1_555 ? ? ? ? ? ? ? 3.308 ? ? metalc19 metalc ? ? A G 23 OP1 ? ? ? 1_555 N CS . CS ? ? A G 23 A CS 113 1_555 ? ? ? ? ? ? ? 3.259 ? ? metalc20 metalc ? ? A A 24 "O2'" ? ? ? 1_555 J CS . CS ? ? A A 24 A CS 109 1_555 ? ? ? ? ? ? ? 3.229 ? ? metalc21 metalc ? ? A C 37 "O2'" ? ? ? 1_555 M CS . CS ? ? A C 37 A CS 112 1_555 ? ? ? ? ? ? ? 2.977 ? ? metalc22 metalc ? ? A C 37 O2 ? ? ? 1_555 M CS . CS ? ? A C 37 A CS 112 1_555 ? ? ? ? ? ? ? 3.183 ? ? metalc23 metalc ? ? A C 38 "O4'" ? ? ? 1_555 M CS . CS ? ? A C 38 A CS 112 1_555 ? ? ? ? ? ? ? 3.312 ? ? metalc24 metalc ? ? A U 41 OP1 ? ? ? 1_555 R MG . MG ? ? A U 41 A MG 117 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc25 metalc ? ? A G 42 OP1 ? ? ? 1_555 T MG . MG ? ? A G 42 A MG 119 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc26 metalc ? ? A C 48 "O2'" ? ? ? 1_555 G CS . CS ? ? A C 48 A CS 106 1_555 ? ? ? ? ? ? ? 3.005 ? ? metalc27 metalc ? ? A C 48 O2 ? ? ? 1_555 G CS . CS ? ? A C 48 A CS 106 1_555 ? ? ? ? ? ? ? 3.319 ? ? metalc28 metalc ? ? A U 51 "O3'" ? ? ? 1_555 D CS . CS ? ? A U 51 A CS 103 1_555 ? ? ? ? ? ? ? 3.301 ? ? metalc29 metalc ? ? A U 51 O2 ? ? ? 1_555 H CS . CS ? ? A U 51 A CS 107 1_555 ? ? ? ? ? ? ? 3.226 ? ? metalc30 metalc ? ? A A 52 OP2 ? ? ? 1_555 D CS . CS ? ? A A 52 A CS 103 1_555 ? ? ? ? ? ? ? 2.978 ? ? metalc31 metalc ? ? A A 52 "O2'" ? ? ? 1_555 J CS . CS ? ? A A 52 A CS 109 1_555 ? ? ? ? ? ? ? 3.427 ? ? metalc32 metalc ? ? A U 53 O4 ? ? ? 1_555 D CS . CS ? ? A U 53 A CS 103 1_555 ? ? ? ? ? ? ? 3.141 ? ? metalc33 metalc ? ? A U 53 O4 ? ? ? 1_555 H CS . CS ? ? A U 53 A CS 107 1_555 ? ? ? ? ? ? ? 3.069 ? ? metalc34 metalc ? ? A U 53 O2 ? ? ? 1_555 N CS . CS ? ? A U 53 A CS 113 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc35 metalc ? ? A U 53 OP1 ? ? ? 1_555 S MG . MG ? ? A U 53 A MG 118 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc36 metalc ? ? A G 58 O6 ? ? ? 1_555 E CS . CS ? ? A G 58 A CS 104 1_555 ? ? ? ? ? ? ? 3.103 ? ? metalc37 metalc ? ? A G 59 O6 ? ? ? 1_555 E CS . CS ? ? A G 59 A CS 104 1_555 ? ? ? ? ? ? ? 3.312 ? ? metalc38 metalc ? ? A G 65 "O5'" ? ? ? 1_555 D CS . CS ? ? A G 65 A CS 103 1_555 ? ? ? ? ? ? ? 3.092 ? ? metalc39 metalc ? ? A C 66 O2 ? ? ? 1_555 L CS . CS ? ? A C 66 A CS 111 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc40 metalc ? ? A C 66 "O2'" ? ? ? 1_555 L CS . CS ? ? A C 66 A CS 111 1_555 ? ? ? ? ? ? ? 3.179 ? ? metalc41 metalc ? ? C CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 102 A HOH 263 1_555 ? ? ? ? ? ? ? 3.272 ? ? metalc42 metalc ? ? C CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 102 A HOH 332 1_555 ? ? ? ? ? ? ? 3.353 ? ? metalc43 metalc ? ? E CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 104 A HOH 348 1_555 ? ? ? ? ? ? ? 2.472 ? ? metalc44 metalc ? ? E CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 104 A HOH 349 1_555 ? ? ? ? ? ? ? 3.078 ? ? metalc45 metalc ? ? I CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 108 A HOH 265 1_555 ? ? ? ? ? ? ? 3.479 ? ? metalc46 metalc ? ? J CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 109 A HOH 345 1_555 ? ? ? ? ? ? ? 3.179 ? ? metalc47 metalc ? ? J CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 109 A HOH 346 1_555 ? ? ? ? ? ? ? 3.102 ? ? metalc48 metalc ? ? J CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 109 A HOH 347 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc49 metalc ? ? L CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 111 A HOH 303 1_555 ? ? ? ? ? ? ? 3.139 ? ? metalc50 metalc ? ? N CS . CS ? ? ? 1_555 V HOH . O ? ? A CS 113 A HOH 243 1_555 ? ? ? ? ? ? ? 3.032 ? ? metalc51 metalc ? ? R MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 117 A HOH 312 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc52 metalc ? ? R MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 117 A HOH 313 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc53 metalc ? ? R MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 117 A HOH 314 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc54 metalc ? ? R MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 117 A HOH 315 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc55 metalc ? ? R MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 117 A HOH 316 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc56 metalc ? ? S MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 118 A HOH 317 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc57 metalc ? ? S MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 118 A HOH 318 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc58 metalc ? ? S MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 118 A HOH 319 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc59 metalc ? ? S MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 118 A HOH 320 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc60 metalc ? ? T MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 119 A HOH 326 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc61 metalc ? ? T MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 119 A HOH 327 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc62 metalc ? ? T MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 119 A HOH 328 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc63 metalc ? ? T MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 119 A HOH 329 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc64 metalc ? ? T MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 119 A HOH 330 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc65 metalc ? ? U MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 120 A HOH 331 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc66 metalc ? ? U MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 120 A HOH 332 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc67 metalc ? ? U MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 120 A HOH 333 1_555 ? ? ? ? ? ? ? 2.012 ? ? metalc68 metalc ? ? U MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 120 A HOH 334 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc69 metalc ? ? U MG . MG ? ? ? 1_555 V HOH . O ? ? A MG 120 A HOH 335 1_555 ? ? ? ? ? ? ? 2.045 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 20 N3 ? ? A GTP 1 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 20 O2 ? ? A GTP 1 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 20 N4 ? ? A GTP 1 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 2 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 2 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 2 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 18 N3 ? ? A A 3 A U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 18 O4 ? ? A A 3 A U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 17 N3 ? ? A A 4 A U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 17 O4 ? ? A A 4 A U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 5 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 6 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 6 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 6 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 7 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 8 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 8 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 8 A G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 12 N7 ? ? A G 9 A A 12 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 50 N3 ? ? A A 21 A U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 50 O4 ? ? A A 21 A U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 22 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 22 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 22 A G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 22 O2 ? ? ? 1_555 A A 52 N6 ? ? A C 22 A A 52 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 23 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 23 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 23 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 24 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 24 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 25 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 25 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 25 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 26 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 26 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 26 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 27 N1 ? ? ? 1_555 A U 44 N3 ? ? A A 27 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 27 N6 ? ? ? 1_555 A U 44 O4 ? ? A A 27 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 43 N1 ? ? A U 28 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 43 N6 ? ? A U 28 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A A 29 N1 ? ? ? 1_555 A G 42 N1 ? ? A A 29 A G 42 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog46 hydrog ? ? A A 29 N6 ? ? ? 1_555 A G 42 O6 ? ? A A 29 A G 42 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog47 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 71 N7 ? ? A U 31 A A 71 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog48 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 31 A A 71 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog49 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 72 N7 ? ? A U 32 A A 72 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog50 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 32 A A 72 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog51 hydrog ? ? A U 35 O4 ? ? ? 1_555 A G 76 N2 ? ? A U 35 A G 76 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog52 hydrog ? ? A U 36 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 36 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 36 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 36 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 37 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 37 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 37 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 38 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 38 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 38 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 38 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 38 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 38 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 39 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 39 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 39 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 39 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 40 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 40 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 50 O2 ? ? ? 1_555 A A 52 N6 ? ? A U 50 A A 52 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog65 hydrog ? ? A A 55 N6 ? ? ? 1_555 A C 69 N3 ? ? A A 55 A C 69 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog66 hydrog ? ? A A 55 N7 ? ? ? 1_555 A C 69 N4 ? ? A A 55 A C 69 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog67 hydrog ? ? A C 56 N4 ? ? ? 1_555 A C 69 O2 ? ? A C 56 A C 69 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog68 hydrog ? ? A U 57 N3 ? ? ? 1_555 A A 68 N1 ? ? A U 57 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 57 O4 ? ? ? 1_555 A A 68 N6 ? ? A U 57 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 58 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 58 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 58 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 59 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 59 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 59 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 59 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 59 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 59 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 60 N3 ? ? ? 1_555 A G 65 N1 ? ? A C 60 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 60 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 60 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 60 O2 ? ? ? 1_555 A G 65 N2 ? ? A C 60 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A U 61 O2 ? ? ? 1_555 A G 64 N1 ? ? A U 61 A G 64 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1G ? A GTP 1 ? A GTP 1 ? 1_555 CS ? I CS . ? A CS 108 ? 1_555 O3B ? A GTP 1 ? A GTP 1 ? 1_555 45.9 ? 2 O1G ? A GTP 1 ? A GTP 1 ? 1_555 CS ? I CS . ? A CS 108 ? 1_555 O ? V HOH . ? A HOH 265 ? 1_555 125.3 ? 3 O3B ? A GTP 1 ? A GTP 1 ? 1_555 CS ? I CS . ? A CS 108 ? 1_555 O ? V HOH . ? A HOH 265 ? 1_555 80.5 ? 4 O3G ? A GTP 1 ? A GTP 1 ? 1_555 CS ? P CS . ? A CS 115 ? 1_555 O6 ? A G 16 ? A G 16 ? 1_555 86.6 ? 5 O3G ? A GTP 1 ? A GTP 1 ? 1_555 CS ? P CS . ? A CS 115 ? 1_555 O4 ? A U 17 ? A U 17 ? 1_555 121.7 ? 6 O6 ? A G 16 ? A G 16 ? 1_555 CS ? P CS . ? A CS 115 ? 1_555 O4 ? A U 17 ? A U 17 ? 1_555 63.3 ? 7 O1A ? A GTP 1 ? A GTP 1 ? 1_555 CS ? Q CS . ? A CS 116 ? 1_555 O2G ? A GTP 1 ? A GTP 1 ? 1_555 87.2 ? 8 O2 ? A C 5 ? A C 5 ? 1_555 CS ? F CS . ? A CS 105 ? 1_555 "O2'" ? A C 5 ? A C 5 ? 1_555 70.7 ? 9 O2 ? A C 5 ? A C 5 ? 1_555 CS ? F CS . ? A CS 105 ? 1_555 O2 ? A U 17 ? A U 17 ? 1_555 68.6 ? 10 "O2'" ? A C 5 ? A C 5 ? 1_555 CS ? F CS . ? A CS 105 ? 1_555 O2 ? A U 17 ? A U 17 ? 1_555 130.4 ? 11 O2 ? A C 6 ? A C 6 ? 1_555 CS ? K CS . ? A CS 110 ? 1_555 "O2'" ? A C 6 ? A C 6 ? 1_555 75.8 ? 12 "O3'" ? A G 9 ? A G 9 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 N7 ? A A 10 ? A A 10 ? 1_555 78.7 ? 13 "O3'" ? A G 9 ? A G 9 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 OP1 ? A A 10 ? A A 10 ? 1_555 43.8 ? 14 N7 ? A A 10 ? A A 10 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 OP1 ? A A 10 ? A A 10 ? 1_555 73.4 ? 15 "O3'" ? A G 9 ? A G 9 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 O ? V HOH . ? A HOH 263 ? 1_555 94.4 ? 16 N7 ? A A 10 ? A A 10 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 O ? V HOH . ? A HOH 263 ? 1_555 143.8 ? 17 OP1 ? A A 10 ? A A 10 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 O ? V HOH . ? A HOH 263 ? 1_555 124.7 ? 18 "O3'" ? A G 9 ? A G 9 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 O ? V HOH . ? A HOH 332 ? 1_555 95.6 ? 19 N7 ? A A 10 ? A A 10 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 O ? V HOH . ? A HOH 332 ? 1_555 71.5 ? 20 OP1 ? A A 10 ? A A 10 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 O ? V HOH . ? A HOH 332 ? 1_555 52.3 ? 21 O ? V HOH . ? A HOH 263 ? 1_555 CS ? C CS . ? A CS 102 ? 1_555 O ? V HOH . ? A HOH 332 ? 1_555 144.7 ? 22 OP1 ? A A 10 ? A A 10 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 331 ? 1_555 90.2 ? 23 OP1 ? A A 10 ? A A 10 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 332 ? 1_555 90.2 ? 24 O ? V HOH . ? A HOH 331 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 332 ? 1_555 179.6 ? 25 OP1 ? A A 10 ? A A 10 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 333 ? 1_555 179.0 ? 26 O ? V HOH . ? A HOH 331 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 333 ? 1_555 89.5 ? 27 O ? V HOH . ? A HOH 332 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 333 ? 1_555 90.1 ? 28 OP1 ? A A 10 ? A A 10 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 334 ? 1_555 90.1 ? 29 O ? V HOH . ? A HOH 331 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 334 ? 1_555 89.8 ? 30 O ? V HOH . ? A HOH 332 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 334 ? 1_555 90.0 ? 31 O ? V HOH . ? A HOH 333 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 334 ? 1_555 90.8 ? 32 OP1 ? A A 10 ? A A 10 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 335 ? 1_555 90.5 ? 33 O ? V HOH . ? A HOH 331 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 335 ? 1_555 91.0 ? 34 O ? V HOH . ? A HOH 332 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 335 ? 1_555 89.1 ? 35 O ? V HOH . ? A HOH 333 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 335 ? 1_555 88.5 ? 36 O ? V HOH . ? A HOH 334 ? 1_555 MG ? U MG . ? A MG 120 ? 1_555 O ? V HOH . ? A HOH 335 ? 1_555 178.9 ? 37 "O3'" ? A C 22 ? A C 22 ? 1_555 CS ? N CS . ? A CS 113 ? 1_555 OP1 ? A G 23 ? A G 23 ? 1_555 44.6 ? 38 "O3'" ? A C 22 ? A C 22 ? 1_555 CS ? N CS . ? A CS 113 ? 1_555 O2 ? A U 53 ? A U 53 ? 1_555 117.7 ? 39 OP1 ? A G 23 ? A G 23 ? 1_555 CS ? N CS . ? A CS 113 ? 1_555 O2 ? A U 53 ? A U 53 ? 1_555 113.4 ? 40 "O3'" ? A C 22 ? A C 22 ? 1_555 CS ? N CS . ? A CS 113 ? 1_555 O ? V HOH . ? A HOH 243 ? 1_555 123.1 ? 41 OP1 ? A G 23 ? A G 23 ? 1_555 CS ? N CS . ? A CS 113 ? 1_555 O ? V HOH . ? A HOH 243 ? 1_555 78.5 ? 42 O2 ? A U 53 ? A U 53 ? 1_555 CS ? N CS . ? A CS 113 ? 1_555 O ? V HOH . ? A HOH 243 ? 1_555 78.5 ? 43 "O2'" ? A A 24 ? A A 24 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 "O2'" ? A A 52 ? A A 52 ? 1_555 118.3 ? 44 "O2'" ? A A 24 ? A A 24 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 345 ? 1_555 93.2 ? 45 "O2'" ? A A 52 ? A A 52 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 345 ? 1_555 86.4 ? 46 "O2'" ? A A 24 ? A A 24 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 346 ? 1_555 149.0 ? 47 "O2'" ? A A 52 ? A A 52 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 346 ? 1_555 76.1 ? 48 O ? V HOH . ? A HOH 345 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 346 ? 1_555 58.8 ? 49 "O2'" ? A A 24 ? A A 24 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 347 ? 1_555 77.3 ? 50 "O2'" ? A A 52 ? A A 52 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 347 ? 1_555 145.5 ? 51 O ? V HOH . ? A HOH 345 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 347 ? 1_555 61.0 ? 52 O ? V HOH . ? A HOH 346 ? 1_555 CS ? J CS . ? A CS 109 ? 1_555 O ? V HOH . ? A HOH 347 ? 1_555 77.3 ? 53 "O2'" ? A C 37 ? A C 37 ? 1_555 CS ? M CS . ? A CS 112 ? 1_555 O2 ? A C 37 ? A C 37 ? 1_555 73.4 ? 54 "O2'" ? A C 37 ? A C 37 ? 1_555 CS ? M CS . ? A CS 112 ? 1_555 "O4'" ? A C 38 ? A C 38 ? 1_555 69.3 ? 55 O2 ? A C 37 ? A C 37 ? 1_555 CS ? M CS . ? A CS 112 ? 1_555 "O4'" ? A C 38 ? A C 38 ? 1_555 77.4 ? 56 OP1 ? A U 41 ? A U 41 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 312 ? 1_555 179.0 ? 57 OP1 ? A U 41 ? A U 41 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 313 ? 1_555 91.1 ? 58 O ? V HOH . ? A HOH 312 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 313 ? 1_555 89.9 ? 59 OP1 ? A U 41 ? A U 41 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 314 ? 1_555 90.0 ? 60 O ? V HOH . ? A HOH 312 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 314 ? 1_555 90.1 ? 61 O ? V HOH . ? A HOH 313 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 314 ? 1_555 88.6 ? 62 OP1 ? A U 41 ? A U 41 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 315 ? 1_555 92.1 ? 63 O ? V HOH . ? A HOH 312 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 315 ? 1_555 87.8 ? 64 O ? V HOH . ? A HOH 313 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 315 ? 1_555 90.5 ? 65 O ? V HOH . ? A HOH 314 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 315 ? 1_555 177.7 ? 66 OP1 ? A U 41 ? A U 41 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 316 ? 1_555 87.6 ? 67 O ? V HOH . ? A HOH 312 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 316 ? 1_555 91.4 ? 68 O ? V HOH . ? A HOH 313 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 316 ? 1_555 178.7 ? 69 O ? V HOH . ? A HOH 314 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 316 ? 1_555 91.5 ? 70 O ? V HOH . ? A HOH 315 ? 1_555 MG ? R MG . ? A MG 117 ? 1_555 O ? V HOH . ? A HOH 316 ? 1_555 89.5 ? 71 OP1 ? A G 42 ? A G 42 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 326 ? 1_555 91.0 ? 72 OP1 ? A G 42 ? A G 42 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 327 ? 1_555 89.2 ? 73 O ? V HOH . ? A HOH 326 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 327 ? 1_555 179.1 ? 74 OP1 ? A G 42 ? A G 42 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 328 ? 1_555 87.3 ? 75 O ? V HOH . ? A HOH 326 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 328 ? 1_555 89.6 ? 76 O ? V HOH . ? A HOH 327 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 328 ? 1_555 91.3 ? 77 OP1 ? A G 42 ? A G 42 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 329 ? 1_555 91.0 ? 78 O ? V HOH . ? A HOH 326 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 329 ? 1_555 89.2 ? 79 O ? V HOH . ? A HOH 327 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 329 ? 1_555 89.9 ? 80 O ? V HOH . ? A HOH 328 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 329 ? 1_555 177.9 ? 81 OP1 ? A G 42 ? A G 42 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 330 ? 1_555 178.6 ? 82 O ? V HOH . ? A HOH 326 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 330 ? 1_555 89.6 ? 83 O ? V HOH . ? A HOH 327 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 330 ? 1_555 90.2 ? 84 O ? V HOH . ? A HOH 328 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 330 ? 1_555 91.5 ? 85 O ? V HOH . ? A HOH 329 ? 1_555 MG ? T MG . ? A MG 119 ? 1_555 O ? V HOH . ? A HOH 330 ? 1_555 90.3 ? 86 "O2'" ? A C 48 ? A C 48 ? 1_555 CS ? G CS . ? A CS 106 ? 1_555 O2 ? A C 48 ? A C 48 ? 1_555 72.0 ? 87 "O3'" ? A U 51 ? A U 51 ? 1_555 CS ? D CS . ? A CS 103 ? 1_555 OP2 ? A A 52 ? A A 52 ? 1_555 47.0 ? 88 "O3'" ? A U 51 ? A U 51 ? 1_555 CS ? D CS . ? A CS 103 ? 1_555 O4 ? A U 53 ? A U 53 ? 1_555 76.4 ? 89 OP2 ? A A 52 ? A A 52 ? 1_555 CS ? D CS . ? A CS 103 ? 1_555 O4 ? A U 53 ? A U 53 ? 1_555 97.8 ? 90 "O3'" ? A U 51 ? A U 51 ? 1_555 CS ? D CS . ? A CS 103 ? 1_555 "O5'" ? A G 65 ? A G 65 ? 1_555 142.8 ? 91 OP2 ? A A 52 ? A A 52 ? 1_555 CS ? D CS . ? A CS 103 ? 1_555 "O5'" ? A G 65 ? A G 65 ? 1_555 118.9 ? 92 O4 ? A U 53 ? A U 53 ? 1_555 CS ? D CS . ? A CS 103 ? 1_555 "O5'" ? A G 65 ? A G 65 ? 1_555 72.1 ? 93 O2 ? A U 51 ? A U 51 ? 1_555 CS ? H CS . ? A CS 107 ? 1_555 O4 ? A U 53 ? A U 53 ? 1_555 67.5 ? 94 OP1 ? A U 53 ? A U 53 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 317 ? 1_555 89.2 ? 95 OP1 ? A U 53 ? A U 53 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 318 ? 1_555 88.4 ? 96 O ? V HOH . ? A HOH 317 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 318 ? 1_555 89.8 ? 97 OP1 ? A U 53 ? A U 53 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 319 ? 1_555 91.0 ? 98 O ? V HOH . ? A HOH 317 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 319 ? 1_555 89.0 ? 99 O ? V HOH . ? A HOH 318 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 319 ? 1_555 178.7 ? 100 OP1 ? A U 53 ? A U 53 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 320 ? 1_555 178.4 ? 101 O ? V HOH . ? A HOH 317 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 320 ? 1_555 91.3 ? 102 O ? V HOH . ? A HOH 318 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 320 ? 1_555 90.0 ? 103 O ? V HOH . ? A HOH 319 ? 1_555 MG ? S MG . ? A MG 118 ? 1_555 O ? V HOH . ? A HOH 320 ? 1_555 90.5 ? 104 O6 ? A G 58 ? A G 58 ? 1_555 CS ? E CS . ? A CS 104 ? 1_555 O6 ? A G 59 ? A G 59 ? 1_555 59.1 ? 105 O6 ? A G 58 ? A G 58 ? 1_555 CS ? E CS . ? A CS 104 ? 1_555 O ? V HOH . ? A HOH 348 ? 1_555 74.2 ? 106 O6 ? A G 59 ? A G 59 ? 1_555 CS ? E CS . ? A CS 104 ? 1_555 O ? V HOH . ? A HOH 348 ? 1_555 98.6 ? 107 O6 ? A G 58 ? A G 58 ? 1_555 CS ? E CS . ? A CS 104 ? 1_555 O ? V HOH . ? A HOH 349 ? 1_555 76.2 ? 108 O6 ? A G 59 ? A G 59 ? 1_555 CS ? E CS . ? A CS 104 ? 1_555 O ? V HOH . ? A HOH 349 ? 1_555 125.9 ? 109 O ? V HOH . ? A HOH 348 ? 1_555 CS ? E CS . ? A CS 104 ? 1_555 O ? V HOH . ? A HOH 349 ? 1_555 96.8 ? 110 O2 ? A C 66 ? A C 66 ? 1_555 CS ? L CS . ? A CS 111 ? 1_555 "O2'" ? A C 66 ? A C 66 ? 1_555 76.0 ? 111 O2 ? A C 66 ? A C 66 ? 1_555 CS ? L CS . ? A CS 111 ? 1_555 O ? V HOH . ? A HOH 303 ? 1_555 96.9 ? 112 "O2'" ? A C 66 ? A C 66 ? 1_555 CS ? L CS . ? A CS 111 ? 1_555 O ? V HOH . ? A HOH 303 ? 1_555 138.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PRF 101 ? 7 'BINDING SITE FOR RESIDUE PRF A 101' AC2 Software A CS 102 ? 3 'BINDING SITE FOR RESIDUE CS A 102' AC3 Software A CS 103 ? 5 'BINDING SITE FOR RESIDUE CS A 103' AC4 Software A CS 104 ? 4 'BINDING SITE FOR RESIDUE CS A 104' AC5 Software A CS 105 ? 3 'BINDING SITE FOR RESIDUE CS A 105' AC6 Software A CS 106 ? 3 'BINDING SITE FOR RESIDUE CS A 106' AC7 Software A CS 107 ? 2 'BINDING SITE FOR RESIDUE CS A 107' AC8 Software A CS 108 ? 1 'BINDING SITE FOR RESIDUE CS A 108' AC9 Software A CS 109 ? 4 'BINDING SITE FOR RESIDUE CS A 109' BC1 Software A CS 110 ? 2 'BINDING SITE FOR RESIDUE CS A 110' BC2 Software A CS 111 ? 2 'BINDING SITE FOR RESIDUE CS A 111' BC3 Software A CS 112 ? 2 'BINDING SITE FOR RESIDUE CS A 112' BC4 Software A CS 113 ? 4 'BINDING SITE FOR RESIDUE CS A 113' BC5 Software A CS 114 ? 2 'BINDING SITE FOR RESIDUE CS A 114' BC6 Software A CS 115 ? 3 'BINDING SITE FOR RESIDUE CS A 115' BC7 Software A CS 116 ? 2 'BINDING SITE FOR RESIDUE CS A 116' BC8 Software A MG 117 ? 6 'BINDING SITE FOR RESIDUE MG A 117' BC9 Software A MG 118 ? 6 'BINDING SITE FOR RESIDUE MG A 118' CC1 Software A MG 119 ? 6 'BINDING SITE FOR RESIDUE MG A 119' CC2 Software A MG 120 ? 6 'BINDING SITE FOR RESIDUE MG A 120' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 C A 30 ? C A 30 . ? 1_555 ? 2 AC1 7 U A 31 ? U A 31 . ? 1_555 ? 3 AC1 7 U A 41 ? U A 41 . ? 1_555 ? 4 AC1 7 G A 42 ? G A 42 . ? 1_555 ? 5 AC1 7 A A 70 ? A A 70 . ? 1_555 ? 6 AC1 7 A A 71 ? A A 71 . ? 1_555 ? 7 AC1 7 HOH V . ? HOH A 203 . ? 1_555 ? 8 AC2 3 G A 9 ? G A 9 . ? 1_555 ? 9 AC2 3 A A 10 ? A A 10 . ? 1_555 ? 10 AC2 3 U A 57 ? U A 57 . ? 6_554 ? 11 AC3 5 U A 51 ? U A 51 . ? 1_555 ? 12 AC3 5 A A 52 ? A A 52 . ? 1_555 ? 13 AC3 5 U A 53 ? U A 53 . ? 1_555 ? 14 AC3 5 G A 64 ? G A 64 . ? 1_555 ? 15 AC3 5 G A 65 ? G A 65 . ? 1_555 ? 16 AC4 4 G A 58 ? G A 58 . ? 1_555 ? 17 AC4 4 G A 59 ? G A 59 . ? 1_555 ? 18 AC4 4 HOH V . ? HOH A 348 . ? 1_555 ? 19 AC4 4 HOH V . ? HOH A 349 . ? 1_555 ? 20 AC5 3 C A 5 ? C A 5 . ? 1_555 ? 21 AC5 3 C A 6 ? C A 6 . ? 1_555 ? 22 AC5 3 U A 17 ? U A 17 . ? 1_555 ? 23 AC6 3 C A 48 ? C A 48 . ? 1_555 ? 24 AC6 3 G A 49 ? G A 49 . ? 1_555 ? 25 AC6 3 U A 57 ? U A 57 . ? 8_556 ? 26 AC7 2 U A 51 ? U A 51 . ? 1_555 ? 27 AC7 2 U A 53 ? U A 53 . ? 1_555 ? 28 AC8 1 GTP A 1 ? GTP A 1 . ? 1_555 ? 29 AC9 4 A A 24 ? A A 24 . ? 1_555 ? 30 AC9 4 A A 52 ? A A 52 . ? 1_555 ? 31 AC9 4 C A 69 ? C A 69 . ? 8_556 ? 32 AC9 4 HOH V . ? HOH A 347 . ? 1_555 ? 33 BC1 2 C A 6 ? C A 6 . ? 1_555 ? 34 BC1 2 G A 7 ? G A 7 . ? 1_555 ? 35 BC2 2 C A 66 ? C A 66 . ? 1_555 ? 36 BC2 2 C A 67 ? C A 67 . ? 1_555 ? 37 BC3 2 C A 37 ? C A 37 . ? 1_555 ? 38 BC3 2 C A 38 ? C A 38 . ? 1_555 ? 39 BC4 4 C A 22 ? C A 22 . ? 1_555 ? 40 BC4 4 G A 23 ? G A 23 . ? 1_555 ? 41 BC4 4 U A 53 ? U A 53 . ? 1_555 ? 42 BC4 4 HOH V . ? HOH A 243 . ? 1_555 ? 43 BC5 2 A A 11 ? A A 11 . ? 1_555 ? 44 BC5 2 U A 40 ? U A 40 . ? 6_554 ? 45 BC6 3 GTP A 1 ? GTP A 1 . ? 1_555 ? 46 BC6 3 G A 16 ? G A 16 . ? 1_555 ? 47 BC6 3 U A 17 ? U A 17 . ? 1_555 ? 48 BC7 2 GTP A 1 ? GTP A 1 . ? 1_555 ? 49 BC7 2 G A 2 ? G A 2 . ? 1_555 ? 50 BC8 6 U A 41 ? U A 41 . ? 1_555 ? 51 BC8 6 HOH V . ? HOH A 312 . ? 1_555 ? 52 BC8 6 HOH V . ? HOH A 313 . ? 1_555 ? 53 BC8 6 HOH V . ? HOH A 314 . ? 1_555 ? 54 BC8 6 HOH V . ? HOH A 315 . ? 1_555 ? 55 BC8 6 HOH V . ? HOH A 316 . ? 1_555 ? 56 BC9 6 U A 53 ? U A 53 . ? 1_555 ? 57 BC9 6 A A 70 ? A A 70 . ? 8_556 ? 58 BC9 6 HOH V . ? HOH A 317 . ? 1_555 ? 59 BC9 6 HOH V . ? HOH A 318 . ? 1_555 ? 60 BC9 6 HOH V . ? HOH A 319 . ? 1_555 ? 61 BC9 6 HOH V . ? HOH A 320 . ? 1_555 ? 62 CC1 6 G A 42 ? G A 42 . ? 1_555 ? 63 CC1 6 HOH V . ? HOH A 326 . ? 1_555 ? 64 CC1 6 HOH V . ? HOH A 327 . ? 1_555 ? 65 CC1 6 HOH V . ? HOH A 328 . ? 1_555 ? 66 CC1 6 HOH V . ? HOH A 329 . ? 1_555 ? 67 CC1 6 HOH V . ? HOH A 330 . ? 1_555 ? 68 CC2 6 A A 10 ? A A 10 . ? 1_555 ? 69 CC2 6 HOH V . ? HOH A 331 . ? 1_555 ? 70 CC2 6 HOH V . ? HOH A 332 . ? 1_555 ? 71 CC2 6 HOH V . ? HOH A 333 . ? 1_555 ? 72 CC2 6 HOH V . ? HOH A 334 . ? 1_555 ? 73 CC2 6 HOH V . ? HOH A 335 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O1G _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GTP _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 236 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A U 35 ? ? C2 A U 35 ? ? O2 A U 35 ? ? 117.13 122.20 -5.07 0.70 N 2 1 N1 A A 43 ? ? C6 A A 43 ? ? N6 A A 43 ? ? 115.00 118.60 -3.60 0.60 N 3 1 "O5'" A U 53 ? ? P A U 53 ? ? OP1 A U 53 ? ? 95.31 105.70 -10.39 0.90 N 4 1 C6 A C 66 ? ? N1 A C 66 ? ? C2 A C 66 ? ? 117.75 120.30 -2.55 0.40 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id GTP _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id GTP _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id G _pdbx_struct_mod_residue.details "GUANOSINE-5'-TRIPHOSPHATE" # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A U 35 ? A U 35 2 1 A G 76 ? A G 76 3 1 A HOH 261 ? V HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 12.2137 31.6747 29.1420 0.2255 0.3680 0.2024 -0.0052 0.0754 -0.0420 -0.5179 -0.1591 0.6491 -0.6191 -1.2522 0.2211 0.2018 0.0031 0.1290 0.2089 0.1095 -0.1040 -0.1130 -0.3180 -0.1889 'X-RAY DIFFRACTION' 2 ? refined -6.4734 32.7780 64.0840 0.4912 0.4698 0.3358 -0.2093 0.2406 -0.2899 2.8075 3.0360 2.1364 -2.7548 1.8026 -1.1173 0.3067 0.0301 2.3335 -1.5598 0.5946 0.8607 1.2373 -0.0533 -0.5483 'X-RAY DIFFRACTION' 3 ? refined 2.5276 21.2332 46.5271 0.1841 0.1414 0.1778 -0.0042 0.0134 -0.0385 3.3374 1.2589 0.3059 1.0941 -0.9155 -0.7364 -0.0601 -0.0351 -0.1288 0.2208 -0.3571 -0.1818 -0.1682 -0.0053 -0.0415 'X-RAY DIFFRACTION' 4 ? refined -0.9547 23.7071 65.0851 0.3061 0.0279 -0.1328 -0.1663 0.0712 0.0482 6.1998 5.6097 2.5072 -0.2817 -0.1905 -0.0020 -0.4591 0.0166 -1.8229 -1.8102 0.3308 0.4016 1.3195 -0.3334 0.7271 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 1 through 29 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 30 through 35 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 36 through 69 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resid 70 through 77 ) ; ? ? ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CS CS CS N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 GTP PG P N N 112 GTP O1G O N N 113 GTP O2G O N N 114 GTP O3G O N N 115 GTP O3B O N N 116 GTP PB P N N 117 GTP O1B O N N 118 GTP O2B O N N 119 GTP O3A O N N 120 GTP PA P N N 121 GTP O1A O N N 122 GTP O2A O N N 123 GTP "O5'" O N N 124 GTP "C5'" C N N 125 GTP "C4'" C N R 126 GTP "O4'" O N N 127 GTP "C3'" C N S 128 GTP "O3'" O N N 129 GTP "C2'" C N R 130 GTP "O2'" O N N 131 GTP "C1'" C N R 132 GTP N9 N Y N 133 GTP C8 C Y N 134 GTP N7 N Y N 135 GTP C5 C Y N 136 GTP C6 C N N 137 GTP O6 O N N 138 GTP N1 N N N 139 GTP C2 C N N 140 GTP N2 N N N 141 GTP N3 N N N 142 GTP C4 C Y N 143 GTP HOG2 H N N 144 GTP HOG3 H N N 145 GTP HOB2 H N N 146 GTP HOA2 H N N 147 GTP "H5'" H N N 148 GTP "H5''" H N N 149 GTP "H4'" H N N 150 GTP "H3'" H N N 151 GTP "HO3'" H N N 152 GTP "H2'" H N N 153 GTP "HO2'" H N N 154 GTP "H1'" H N N 155 GTP H8 H N N 156 GTP HN1 H N N 157 GTP HN21 H N N 158 GTP HN22 H N N 159 HOH O O N N 160 HOH H1 H N N 161 HOH H2 H N N 162 MG MG MG N N 163 PRF N1 N N N 164 PRF C2 C N N 165 PRF N3 N N N 166 PRF C4 C Y N 167 PRF C5 C Y N 168 PRF C6 C N N 169 PRF O6 O N N 170 PRF C7 C Y N 171 PRF C10 C N N 172 PRF N11 N N N 173 PRF C8 C Y N 174 PRF N9 N Y N 175 PRF N2 N N N 176 PRF H91 H N N 177 PRF H101 H N N 178 PRF H102 H N N 179 PRF H111 H N N 180 PRF H112 H N N 181 PRF H81 H N N 182 PRF HN91 H N N 183 PRF HN21 H N N 184 PRF HN22 H N N 185 U OP3 O N N 186 U P P N N 187 U OP1 O N N 188 U OP2 O N N 189 U "O5'" O N N 190 U "C5'" C N N 191 U "C4'" C N R 192 U "O4'" O N N 193 U "C3'" C N S 194 U "O3'" O N N 195 U "C2'" C N R 196 U "O2'" O N N 197 U "C1'" C N R 198 U N1 N N N 199 U C2 C N N 200 U O2 O N N 201 U N3 N N N 202 U C4 C N N 203 U O4 O N N 204 U C5 C N N 205 U C6 C N N 206 U HOP3 H N N 207 U HOP2 H N N 208 U "H5'" H N N 209 U "H5''" H N N 210 U "H4'" H N N 211 U "H3'" H N N 212 U "HO3'" H N N 213 U "H2'" H N N 214 U "HO2'" H N N 215 U "H1'" H N N 216 U H3 H N N 217 U H5 H N N 218 U H6 H N N 219 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 PRF N1 C2 sing N N 168 PRF N1 C6 sing N N 169 PRF N1 H91 sing N N 170 PRF C2 N3 doub N N 171 PRF C2 N2 sing N N 172 PRF N3 C4 sing N N 173 PRF C4 C5 doub Y N 174 PRF C4 N9 sing Y N 175 PRF C5 C6 sing N N 176 PRF C5 C7 sing Y N 177 PRF C6 O6 doub N N 178 PRF C7 C10 sing N N 179 PRF C7 C8 doub Y N 180 PRF C10 N11 sing N N 181 PRF C10 H101 sing N N 182 PRF C10 H102 sing N N 183 PRF N11 H111 sing N N 184 PRF N11 H112 sing N N 185 PRF C8 N9 sing Y N 186 PRF C8 H81 sing N N 187 PRF N9 HN91 sing N N 188 PRF N2 HN21 sing N N 189 PRF N2 HN22 sing N N 190 U OP3 P sing N N 191 U OP3 HOP3 sing N N 192 U P OP1 doub N N 193 U P OP2 sing N N 194 U P "O5'" sing N N 195 U OP2 HOP2 sing N N 196 U "O5'" "C5'" sing N N 197 U "C5'" "C4'" sing N N 198 U "C5'" "H5'" sing N N 199 U "C5'" "H5''" sing N N 200 U "C4'" "O4'" sing N N 201 U "C4'" "C3'" sing N N 202 U "C4'" "H4'" sing N N 203 U "O4'" "C1'" sing N N 204 U "C3'" "O3'" sing N N 205 U "C3'" "C2'" sing N N 206 U "C3'" "H3'" sing N N 207 U "O3'" "HO3'" sing N N 208 U "C2'" "O2'" sing N N 209 U "C2'" "C1'" sing N N 210 U "C2'" "H2'" sing N N 211 U "O2'" "HO2'" sing N N 212 U "C1'" N1 sing N N 213 U "C1'" "H1'" sing N N 214 U N1 C2 sing N N 215 U N1 C6 sing N N 216 U C2 O2 doub N N 217 U C2 N3 sing N N 218 U N3 C4 sing N N 219 U N3 H3 sing N N 220 U C4 O4 doub N N 221 U C4 C5 sing N N 222 U C5 C6 doub N N 223 U C5 H5 sing N N 224 U C6 H6 sing N N 225 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4JF2 'double helix' 4JF2 'a-form double helix' 4JF2 tetraloop 4JF2 'mismatched base pair' 4JF2 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 12 1_555 A G 9 1_555 -7.004 -5.092 1.029 -12.749 -0.308 -12.498 1 A_A12:G9_A A 12 ? A 9 ? ? ? 1 A G 13 1_555 A C 8 1_555 -0.307 -0.180 0.057 1.415 7.039 3.137 2 A_G13:C8_A A 13 ? A 8 ? 19 1 1 A C 14 1_555 A G 7 1_555 -0.205 -0.207 0.052 4.542 -4.158 4.163 3 A_C14:G7_A A 14 ? A 7 ? 19 1 1 A G 15 1_555 A C 6 1_555 -0.082 -0.272 0.016 -0.148 -10.631 -1.044 4 A_G15:C6_A A 15 ? A 6 ? 19 1 1 A G 16 1_555 A C 5 1_555 -0.226 -0.215 -0.019 -5.128 -15.262 2.618 5 A_G16:C5_A A 16 ? A 5 ? 19 1 1 A U 17 1_555 A A 4 1_555 -0.330 -0.190 -0.064 1.360 -11.338 -4.924 6 A_U17:A4_A A 17 ? A 4 ? 20 1 1 A U 18 1_555 A A 3 1_555 -0.229 -0.245 0.002 10.398 -6.375 0.757 7 A_U18:A3_A A 18 ? A 3 ? 20 1 1 A C 19 1_555 A G 2 1_555 0.426 -0.491 0.069 2.925 -7.658 -3.718 8 A_C19:G2_A A 19 ? A 2 ? 19 1 1 A C 20 1_555 A GTP 1 1_555 0.175 -0.171 0.048 -1.795 -7.261 -2.323 9 A_C20:GTP1_A A 20 ? A 1 ? 19 1 1 A A 21 1_555 A U 50 1_555 0.137 -0.142 0.214 0.002 -8.577 -3.466 10 A_A21:U50_A A 21 ? A 50 ? 20 1 1 A C 22 1_555 A G 49 1_555 0.295 -0.110 0.059 5.969 -19.046 3.601 11 A_C22:G49_A A 22 ? A 49 ? 19 1 1 A G 23 1_555 A C 48 1_555 -0.068 -0.007 0.172 -0.230 -9.414 2.927 12 A_G23:C48_A A 23 ? A 48 ? 19 1 1 A A 24 1_555 A U 47 1_555 0.093 -0.015 0.278 5.773 -11.363 -1.076 13 A_A24:U47_A A 24 ? A 47 ? 20 1 1 A C 25 1_555 A G 46 1_555 0.145 0.011 0.031 5.072 -14.826 2.335 14 A_C25:G46_A A 25 ? A 46 ? 19 1 1 A G 26 1_555 A C 45 1_555 -0.165 -0.230 -0.203 -5.113 -17.645 -0.399 15 A_G26:C45_A A 26 ? A 45 ? 19 1 1 A A 27 1_555 A U 44 1_555 -0.035 -0.086 0.263 -7.004 -13.337 6.145 16 A_A27:U44_A A 27 ? A 44 ? 20 1 1 A U 28 1_555 A A 43 1_555 -0.140 -0.152 0.288 -2.021 -16.667 -0.508 17 A_U28:A43_A A 28 ? A 43 ? 20 1 1 A A 29 1_555 A G 42 1_555 0.215 1.516 -0.193 -8.337 -12.220 -14.127 18 A_A29:G42_A A 29 ? A 42 ? 8 1 1 A U 35 1_555 A G 76 1_555 -7.696 -2.275 -0.105 10.245 -1.961 -12.434 19 A_U35:G76_A A 35 ? A 76 ? ? ? 1 A U 36 1_555 A A 75 1_555 -0.612 -0.258 -0.179 10.388 -3.707 1.859 20 A_U36:A75_A A 36 ? A 75 ? 20 1 1 A C 37 1_555 A G 74 1_555 0.109 -0.200 -0.230 13.424 -11.821 -0.290 21 A_C37:G74_A A 37 ? A 74 ? 19 1 1 A C 38 1_555 A G 73 1_555 0.502 -0.246 -0.264 6.959 -5.928 0.695 22 A_C38:G73_A A 38 ? A 73 ? 19 1 1 A U 39 1_555 A A 72 1_555 -0.081 -0.071 0.045 12.940 -3.942 8.208 23 A_U39:A72_A A 39 ? A 72 ? 20 1 1 A U 40 1_555 A A 71 1_555 -0.087 -0.195 -0.023 6.055 7.544 6.881 24 A_U40:A71_A A 40 ? A 71 ? 20 1 1 A C 56 1_555 A C 69 1_555 -3.552 -1.741 1.084 8.156 -18.098 -31.626 25 A_C56:C69_A A 56 ? A 69 ? ? 1 1 A U 57 1_555 A A 68 1_555 -0.049 0.039 0.502 -0.379 -17.723 -2.804 26 A_U57:A68_A A 57 ? A 68 ? 20 1 1 A G 58 1_555 A C 67 1_555 -0.211 -0.150 0.173 -0.266 -10.420 2.200 27 A_G58:C67_A A 58 ? A 67 ? 19 1 1 A G 59 1_555 A C 66 1_555 -0.056 -0.083 0.174 3.669 -5.931 3.740 28 A_G59:C66_A A 59 ? A 66 ? 19 1 1 A C 60 1_555 A G 65 1_555 0.439 -0.042 -0.111 6.438 -3.515 0.695 29 A_C60:G65_A A 60 ? A 65 ? 19 1 1 A U 61 1_555 A G 64 1_555 0.960 -4.985 -0.049 -10.277 -3.797 -105.493 30 A_U61:G64_A A 61 ? A 64 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 12 1_555 A G 9 1_555 A G 13 1_555 A C 8 1_555 1.738 -1.037 2.809 1.356 9.613 54.331 -1.598 -1.811 2.644 10.433 -1.472 55.127 1 AA_A12G13:C8G9_AA A 12 ? A 9 ? A 13 ? A 8 ? 1 A G 13 1_555 A C 8 1_555 A C 14 1_555 A G 7 1_555 0.165 -1.931 3.275 0.482 3.215 30.332 -4.291 -0.220 3.061 6.122 -0.917 30.502 2 AA_G13C14:G7C8_AA A 13 ? A 8 ? A 14 ? A 7 ? 1 A C 14 1_555 A G 7 1_555 A G 15 1_555 A C 6 1_555 -0.280 -1.791 3.261 2.718 9.959 30.394 -4.875 0.953 2.529 18.343 -5.006 32.060 3 AA_C14G15:C6G7_AA A 14 ? A 7 ? A 15 ? A 6 ? 1 A G 15 1_555 A C 6 1_555 A G 16 1_555 A C 5 1_555 0.710 -2.044 3.319 0.055 7.826 30.112 -5.219 -1.314 2.716 14.752 -0.103 31.089 4 AA_G15G16:C5C6_AA A 15 ? A 6 ? A 16 ? A 5 ? 1 A G 16 1_555 A C 5 1_555 A U 17 1_555 A A 4 1_555 -1.377 -1.953 3.039 -3.963 2.873 26.564 -4.863 2.012 2.985 6.185 8.533 27.003 5 AA_G16U17:A4C5_AA A 16 ? A 5 ? A 17 ? A 4 ? 1 A U 17 1_555 A A 4 1_555 A U 18 1_555 A A 3 1_555 -0.057 -1.593 3.195 -3.486 5.641 29.992 -4.044 -0.533 2.843 10.736 6.634 30.700 6 AA_U17U18:A3A4_AA A 17 ? A 4 ? A 18 ? A 3 ? 1 A U 18 1_555 A A 3 1_555 A C 19 1_555 A G 2 1_555 -0.154 -1.746 3.388 -1.220 12.904 34.773 -4.389 0.087 2.603 20.722 1.960 37.040 7 AA_U18C19:G2A3_AA A 18 ? A 3 ? A 19 ? A 2 ? 1 A C 19 1_555 A G 2 1_555 A C 20 1_555 A GTP 1 1_555 0.588 -2.057 3.190 2.298 9.759 36.111 -4.361 -0.643 2.598 15.382 -3.621 37.432 8 AA_C19C20:GTP1G2_AA A 19 ? A 2 ? A 20 ? A 1 ? 1 A C 20 1_555 A GTP 1 1_555 A A 21 1_555 A U 50 1_555 0.298 -1.704 3.012 -0.262 8.764 32.285 -4.201 -0.556 2.475 15.408 0.461 33.423 9 AA_C20A21:U50GTP1_AA A 20 ? A 1 ? A 21 ? A 50 ? 1 A A 21 1_555 A U 50 1_555 A C 22 1_555 A G 49 1_555 0.934 -1.510 3.093 3.202 5.230 34.112 -3.280 -1.114 2.910 8.827 -5.404 34.642 10 AA_A21C22:G49U50_AA A 21 ? A 50 ? A 22 ? A 49 ? 1 A C 22 1_555 A G 49 1_555 A G 23 1_555 A C 48 1_555 -0.688 -2.083 3.273 -2.442 9.883 25.958 -6.450 0.906 2.388 21.002 5.190 27.851 11 AA_C22G23:C48G49_AA A 22 ? A 49 ? A 23 ? A 48 ? 1 A G 23 1_555 A C 48 1_555 A A 24 1_555 A U 47 1_555 -0.826 -1.180 3.072 -1.225 7.073 34.602 -2.896 1.197 2.810 11.735 2.033 35.316 12 AA_G23A24:U47C48_AA A 23 ? A 48 ? A 24 ? A 47 ? 1 A A 24 1_555 A U 47 1_555 A C 25 1_555 A G 46 1_555 0.622 -1.204 3.153 4.063 13.669 31.465 -3.954 -0.478 2.491 23.738 -7.056 34.471 13 AA_A24C25:G46U47_AA A 24 ? A 47 ? A 25 ? A 46 ? 1 A C 25 1_555 A G 46 1_555 A G 26 1_555 A C 45 1_555 0.387 -1.585 3.494 2.231 13.391 29.088 -5.220 -0.311 2.557 25.015 -4.168 32.038 14 AA_C25G26:C45G46_AA A 25 ? A 46 ? A 26 ? A 45 ? 1 A G 26 1_555 A C 45 1_555 A A 27 1_555 A U 44 1_555 0.659 -1.641 3.160 -2.063 8.039 32.254 -4.074 -1.460 2.640 14.180 3.639 33.277 15 AA_G26A27:U44C45_AA A 26 ? A 45 ? A 27 ? A 44 ? 1 A A 27 1_555 A U 44 1_555 A U 28 1_555 A A 43 1_555 -0.569 -1.698 3.046 0.075 5.140 30.530 -4.066 1.078 2.729 9.675 -0.140 30.950 16 AA_A27U28:A43U44_AA A 27 ? A 44 ? A 28 ? A 43 ? 1 A U 28 1_555 A A 43 1_555 A A 29 1_555 A G 42 1_555 -0.525 -1.809 3.223 5.894 9.162 34.915 -4.034 1.575 2.564 14.830 -9.540 36.525 17 AA_U28A29:G42A43_AA A 28 ? A 43 ? A 29 ? A 42 ? 1 A U 35 1_555 A G 76 1_555 A U 36 1_555 A A 75 1_555 1.443 -1.768 3.349 -5.463 3.968 52.476 -2.237 -1.967 3.063 4.466 6.149 52.878 18 AA_U35U36:A75G76_AA A 35 ? A 76 ? A 36 ? A 75 ? 1 A U 36 1_555 A A 75 1_555 A C 37 1_555 A G 74 1_555 0.216 -1.422 3.263 -0.054 1.224 38.067 -2.333 -0.338 3.217 1.876 0.083 38.086 19 AA_U36C37:G74A75_AA A 36 ? A 75 ? A 37 ? A 74 ? 1 A C 37 1_555 A G 74 1_555 A C 38 1_555 A G 73 1_555 -0.739 -2.350 3.387 -1.984 6.825 28.024 -6.165 1.059 2.793 13.813 4.016 28.894 20 AA_C37C38:G73G74_AA A 37 ? A 74 ? A 38 ? A 73 ? 1 A C 38 1_555 A G 73 1_555 A U 39 1_555 A A 72 1_555 0.805 -1.667 3.214 -2.860 2.214 29.064 -3.753 -2.180 2.990 4.391 5.672 29.283 21 AA_C38U39:A72G73_AA A 38 ? A 73 ? A 39 ? A 72 ? 1 A U 39 1_555 A A 72 1_555 A U 40 1_555 A A 71 1_555 -0.384 -2.266 3.494 -2.689 12.845 27.925 -6.595 0.236 2.282 24.948 5.223 30.800 22 AA_U39U40:A71A72_AA A 39 ? A 72 ? A 40 ? A 71 ? 1 A C 56 1_555 A C 69 1_555 A U 57 1_555 A A 68 1_555 1.732 -1.106 3.815 3.356 13.867 48.877 -2.403 -1.750 3.504 16.359 -3.960 50.794 23 AA_C56U57:A68C69_AA A 56 ? A 69 ? A 57 ? A 68 ? 1 A U 57 1_555 A A 68 1_555 A G 58 1_555 A C 67 1_555 0.946 -1.332 3.152 3.391 8.612 32.036 -3.653 -1.126 2.793 15.211 -5.989 33.313 24 AA_U57G58:C67A68_AA A 57 ? A 68 ? A 58 ? A 67 ? 1 A G 58 1_555 A C 67 1_555 A G 59 1_555 A C 66 1_555 0.727 -1.900 3.058 -1.111 3.718 29.152 -4.457 -1.645 2.771 7.346 2.195 29.403 25 AA_G58G59:C66C67_AA A 58 ? A 67 ? A 59 ? A 66 ? 1 A G 59 1_555 A C 66 1_555 A C 60 1_555 A G 65 1_555 -0.319 -2.243 3.248 0.327 1.404 32.277 -4.274 0.630 3.147 2.524 -0.588 32.309 26 AA_G59C60:G65C66_AA A 59 ? A 66 ? A 60 ? A 65 ? 1 A C 60 1_555 A G 65 1_555 A U 61 1_555 A G 64 1_555 -1.351 -1.148 3.519 8.633 5.572 93.733 -0.891 1.088 3.360 3.809 -5.901 94.163 27 AA_C60U61:G64G65_AA A 60 ? A 65 ? A 61 ? A 64 ? # _atom_sites.entry_id 4JF2 _atom_sites.fract_transf_matrix[1][1] 0.017231 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011632 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010192 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CS MG N O P # loop_