HEADER TRANSPORT PROTEIN 12-MAR-13 4JLQ TITLE CRYSTAL STRUCTURE OF HUMAN KARYOPHERIN-BETA2 BOUND TO THE PY-NLS OF TITLE 2 SACCHAROMYCES CEREVISIAE NAB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPORTIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 9-331 AND 375-898; COMPND 5 SYNONYM: IMPORTIN BETA-2, KARYOPHERIN BETA-2, M9 REGION INTERACTION COMPND 6 PROTEIN, MIP; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 205-242; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KPNB2, MIP1, TNPO1, TRN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-TEV; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: NAB2, YGL122C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 RIL; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PGEX-TEV KEYWDS HEAT REPEATS, KARYOPHERIN, NUCLEAR IMPORT, PROTEINTRANSPORT, KEYWDS 2 IMPORTIN, TRANSPORTIN, TRANSPORT PROTEIN, NLS, NAB2, STRUCTURAL KEYWDS 3 GENOMICS, NUCLEOCYTOPLASMIC TRANSPORT: A TARGET FOR CELLULAR CONTROL KEYWDS 4 (NPCXSTALS), NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM KEYWDS 5 (NYSGRC), PSI-BIOLOGY, NPCXSTALS EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,A.GIZZI,M.P.ROUT,Y.M.CHOOK,S.C.ALMO,NEW YORK AUTHOR 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC),NUCLEOCYTOPLASMIC AUTHOR 3 TRANSPORT: A TARGET FOR CELLULAR CONTROL (NPCXSTALS) REVDAT 4 20-SEP-23 4JLQ 1 REMARK REVDAT 3 26-JUL-17 4JLQ 1 SOURCE REMARK REVDAT 2 04-SEP-13 4JLQ 1 JRNL REVDAT 1 03-APR-13 4JLQ 0 SPRSDE 03-APR-13 4JLQ 4H1K JRNL AUTH M.SONIAT,P.SAMPATHKUMAR,G.COLLETT,A.S.GIZZI,R.N.BANU, JRNL AUTH 2 R.C.BHOSLE,S.CHAMALA,S.CHOWDHURY,A.FISER,A.S.GLENN, JRNL AUTH 3 J.HAMMONDS,B.HILLERICH,K.KHAFIZOV,J.D.LOVE,B.MATIKAINEN, JRNL AUTH 4 R.D.SEIDEL,R.TORO,P.RAJESH KUMAR,J.B.BONANNO,Y.M.CHOOK, JRNL AUTH 5 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF HUMAN KARYOPHERIN BETA 2 BOUND TO THE JRNL TITL 2 PY-NLS OF SACCHAROMYCES CEREVISIAE NAB2. JRNL REF J.STRUCT.FUNCT.GENOM. V. 14 31 2013 JRNL REFN ISSN 1345-711X JRNL PMID 23535894 JRNL DOI 10.1007/S10969-013-9150-1 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1538 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2097 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6733 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 104.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.82000 REMARK 3 B22 (A**2) : 2.89000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.007 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6877 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6683 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9344 ; 1.538 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15401 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 844 ; 6.582 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 309 ;41.327 ;25.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1224 ;16.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;23.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1075 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7706 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1506 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30914 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QMR AND 4FDD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION CONDITIONS: PROTEIN REMARK 280 (20 MM HEPES, PH 7.3, 110 MM POTASSIUM ACETATE, 2MM MAGNESIUM REMARK 280 ACETATE, 20% GLYCEROL, 2MM DTT); RESERVOIR (MCSG3 #95: 0.7 M REMARK 280 SODIUM CITRATE TRIBASIC, 100MM BIS-TRISPROPANTE PH 7.0); REMARK 280 CRYOPROTECTION (20% GLYCEROL), TEMPERATURE 298K, VAPOR DIFFUSION, REMARK 280 SITTING DROP, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.11700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 86.19150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.11700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 86.19150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A 1:1 COMPLEX OF HSKAPBETA2 AND REMARK 300 SCNAB2-PY-NLS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 TYR A 3 REMARK 465 ASP A 321 REMARK 465 VAL A 322 REMARK 465 GLU A 323 REMARK 465 GLY A 360 REMARK 465 GLY A 361 REMARK 465 SER A 362 REMARK 465 GLY A 363 REMARK 465 GLY A 364 REMARK 465 SER A 365 REMARK 465 GLY A 366 REMARK 465 ASP A 367 REMARK 465 ARG B 205 REMARK 465 PHE B 206 REMARK 465 THR B 207 REMARK 465 GLN B 208 REMARK 465 ARG B 209 REMARK 465 GLY B 210 REMARK 465 GLY B 211 REMARK 465 GLY B 212 REMARK 465 ALA B 213 REMARK 465 VAL B 214 REMARK 465 GLY B 215 REMARK 465 LYS B 216 REMARK 465 ASN B 217 REMARK 465 ARG B 218 REMARK 465 ARG B 219 REMARK 465 GLY B 220 REMARK 465 GLY B 221 REMARK 465 ARG B 222 REMARK 465 GLY B 223 REMARK 465 GLY B 224 REMARK 465 ASN B 225 REMARK 465 ARG B 226 REMARK 465 GLY B 227 REMARK 465 GLY B 228 REMARK 465 ARG B 229 REMARK 465 ASN B 230 REMARK 465 ASN B 231 REMARK 465 ASN B 232 REMARK 465 SER B 233 REMARK 465 LYS B 241 REMARK 465 ALA B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 581 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 44 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 107.54 -57.57 REMARK 500 GLN A 42 -34.47 -34.88 REMARK 500 ASP A 61 124.77 -28.25 REMARK 500 HIS A 79 36.96 70.38 REMARK 500 GLU A 122 178.66 -53.86 REMARK 500 VAL A 167 -36.31 -34.75 REMARK 500 ASP A 169 72.31 57.59 REMARK 500 ARG A 170 66.78 30.37 REMARK 500 LEU A 243 -36.03 -33.29 REMARK 500 ARG A 246 64.34 -119.68 REMARK 500 ARG A 295 -35.07 -39.60 REMARK 500 ARG A 391 -128.29 44.02 REMARK 500 GLU A 393 -11.16 -45.78 REMARK 500 HIS A 408 151.91 -41.88 REMARK 500 CYS A 512 -127.22 45.63 REMARK 500 HIS A 535 -118.33 60.56 REMARK 500 HIS A 554 -36.36 -36.78 REMARK 500 GLU A 579 24.90 81.14 REMARK 500 GLN A 598 -124.28 59.90 REMARK 500 PRO A 603 -31.00 -34.31 REMARK 500 CYS A 698 73.04 -157.63 REMARK 500 ASP A 806 106.25 -47.16 REMARK 500 PRO A 825 1.85 -62.66 REMARK 500 LYS A 846 150.61 -48.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-020458 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: NYSGRC-020441 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT RESIDUES 337 TO 367 WERE REPLACED WITH REMARK 999 GGSGGSG DBREF 4JLQ A 1 323 UNP Q92973 TNPO1_HUMAN 9 331 DBREF 4JLQ A 367 890 UNP Q92973 TNPO1_HUMAN 375 898 DBREF 4JLQ B 205 242 UNP P32505 NAB2_YEAST 205 242 SEQADV 4JLQ GLY A 360 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ GLY A 361 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ SER A 362 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ GLY A 363 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ GLY A 364 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ SER A 365 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ GLY A 366 UNP Q92973 SEE REMARK 999 SEQRES 1 A 854 MET GLU TYR GLU TRP LYS PRO ASP GLU GLN GLY LEU GLN SEQRES 2 A 854 GLN ILE LEU GLN LEU LEU LYS GLU SER GLN SER PRO ASP SEQRES 3 A 854 THR THR ILE GLN ARG THR VAL GLN GLN LYS LEU GLU GLN SEQRES 4 A 854 LEU ASN GLN TYR PRO ASP PHE ASN ASN TYR LEU ILE PHE SEQRES 5 A 854 VAL LEU THR LYS LEU LYS SER GLU ASP GLU PRO THR ARG SEQRES 6 A 854 SER LEU SER GLY LEU ILE LEU LYS ASN ASN VAL LYS ALA SEQRES 7 A 854 HIS PHE GLN ASN PHE PRO ASN GLY VAL THR ASP PHE ILE SEQRES 8 A 854 LYS SER GLU CYS LEU ASN ASN ILE GLY ASP SER SER PRO SEQRES 9 A 854 LEU ILE ARG ALA THR VAL GLY ILE LEU ILE THR THR ILE SEQRES 10 A 854 ALA SER LYS GLY GLU LEU GLN ASN TRP PRO ASP LEU LEU SEQRES 11 A 854 PRO LYS LEU CYS SER LEU LEU ASP SER GLU ASP TYR ASN SEQRES 12 A 854 THR CYS GLU GLY ALA PHE GLY ALA LEU GLN LYS ILE CYS SEQRES 13 A 854 GLU ASP SER ALA GLU ILE LEU ASP SER ASP VAL LEU ASP SEQRES 14 A 854 ARG PRO LEU ASN ILE MET ILE PRO LYS PHE LEU GLN PHE SEQRES 15 A 854 PHE LYS HIS SER SER PRO LYS ILE ARG SER HIS ALA VAL SEQRES 16 A 854 ALA CYS VAL ASN GLN PHE ILE ILE SER ARG THR GLN ALA SEQRES 17 A 854 LEU MET LEU HIS ILE ASP SER PHE ILE GLU ASN LEU PHE SEQRES 18 A 854 ALA LEU ALA GLY ASP GLU GLU PRO GLU VAL ARG LYS ASN SEQRES 19 A 854 VAL CYS ARG ALA LEU VAL MET LEU LEU GLU VAL ARG MET SEQRES 20 A 854 ASP ARG LEU LEU PRO HIS MET HIS ASN ILE VAL GLU TYR SEQRES 21 A 854 MET LEU GLN ARG THR GLN ASP GLN ASP GLU ASN VAL ALA SEQRES 22 A 854 LEU GLU ALA CYS GLU PHE TRP LEU THR LEU ALA GLU GLN SEQRES 23 A 854 PRO ILE CYS LYS ASP VAL LEU VAL ARG HIS LEU PRO LYS SEQRES 24 A 854 LEU ILE PRO VAL LEU VAL ASN GLY MET LYS TYR SER ASP SEQRES 25 A 854 ILE ASP ILE ILE LEU LEU LYS GLY ASP VAL GLU GLY GLY SEQRES 26 A 854 SER GLY GLY SER GLY ASP ASP THR ILE SER ASP TRP ASN SEQRES 27 A 854 LEU ARG LYS CYS SER ALA ALA ALA LEU ASP VAL LEU ALA SEQRES 28 A 854 ASN VAL TYR ARG ASP GLU LEU LEU PRO HIS ILE LEU PRO SEQRES 29 A 854 LEU LEU LYS GLU LEU LEU PHE HIS HIS GLU TRP VAL VAL SEQRES 30 A 854 LYS GLU SER GLY ILE LEU VAL LEU GLY ALA ILE ALA GLU SEQRES 31 A 854 GLY CYS MET GLN GLY MET ILE PRO TYR LEU PRO GLU LEU SEQRES 32 A 854 ILE PRO HIS LEU ILE GLN CYS LEU SER ASP LYS LYS ALA SEQRES 33 A 854 LEU VAL ARG SER ILE THR CYS TRP THR LEU SER ARG TYR SEQRES 34 A 854 ALA HIS TRP VAL VAL SER GLN PRO PRO ASP THR TYR LEU SEQRES 35 A 854 LYS PRO LEU MET THR GLU LEU LEU LYS ARG ILE LEU ASP SEQRES 36 A 854 SER ASN LYS ARG VAL GLN GLU ALA ALA CYS SER ALA PHE SEQRES 37 A 854 ALA THR LEU GLU GLU GLU ALA CYS THR GLU LEU VAL PRO SEQRES 38 A 854 TYR LEU ALA TYR ILE LEU ASP THR LEU VAL PHE ALA PHE SEQRES 39 A 854 SER LYS TYR GLN HIS LYS ASN LEU LEU ILE LEU TYR ASP SEQRES 40 A 854 ALA ILE GLY THR LEU ALA ASP SER VAL GLY HIS HIS LEU SEQRES 41 A 854 ASN LYS PRO GLU TYR ILE GLN MET LEU MET PRO PRO LEU SEQRES 42 A 854 ILE GLN LYS TRP ASN MET LEU LYS ASP GLU ASP LYS ASP SEQRES 43 A 854 LEU PHE PRO LEU LEU GLU CYS LEU SER SER VAL ALA THR SEQRES 44 A 854 ALA LEU GLN SER GLY PHE LEU PRO TYR CYS GLU PRO VAL SEQRES 45 A 854 TYR GLN ARG CYS VAL ASN LEU VAL GLN LYS THR LEU ALA SEQRES 46 A 854 GLN ALA MET LEU ASN ASN ALA GLN PRO ASP GLN TYR GLU SEQRES 47 A 854 ALA PRO ASP LYS ASP PHE MET ILE VAL ALA LEU ASP LEU SEQRES 48 A 854 LEU SER GLY LEU ALA GLU GLY LEU GLY GLY ASN ILE GLU SEQRES 49 A 854 GLN LEU VAL ALA ARG SER ASN ILE LEU THR LEU MET TYR SEQRES 50 A 854 GLN CYS MET GLN ASP LYS MET PRO GLU VAL ARG GLN SER SEQRES 51 A 854 SER PHE ALA LEU LEU GLY ASP LEU THR LYS ALA CYS PHE SEQRES 52 A 854 GLN HIS VAL LYS PRO CYS ILE ALA ASP PHE MET PRO ILE SEQRES 53 A 854 LEU GLY THR ASN LEU ASN PRO GLU PHE ILE SER VAL CYS SEQRES 54 A 854 ASN ASN ALA THR TRP ALA ILE GLY GLU ILE SER ILE GLN SEQRES 55 A 854 MET GLY ILE GLU MET GLN PRO TYR ILE PRO MET VAL LEU SEQRES 56 A 854 HIS GLN LEU VAL GLU ILE ILE ASN ARG PRO ASN THR PRO SEQRES 57 A 854 LYS THR LEU LEU GLU ASN THR ALA ILE THR ILE GLY ARG SEQRES 58 A 854 LEU GLY TYR VAL CYS PRO GLN GLU VAL ALA PRO MET LEU SEQRES 59 A 854 GLN GLN PHE ILE ARG PRO TRP CYS THR SER LEU ARG ASN SEQRES 60 A 854 ILE ARG ASP ASN GLU GLU LYS ASP SER ALA PHE ARG GLY SEQRES 61 A 854 ILE CYS THR MET ILE SER VAL ASN PRO SER GLY VAL ILE SEQRES 62 A 854 GLN ASP PHE ILE PHE PHE CYS ASP ALA VAL ALA SER TRP SEQRES 63 A 854 ILE ASN PRO LYS ASP ASP LEU ARG ASP MET PHE CYS LYS SEQRES 64 A 854 ILE LEU HIS GLY PHE LYS ASN GLN VAL GLY ASP GLU ASN SEQRES 65 A 854 TRP ARG ARG PHE SER ASP GLN PHE PRO LEU PRO LEU LYS SEQRES 66 A 854 GLU ARG LEU ALA ALA PHE TYR GLY VAL SEQRES 1 B 38 ARG PHE THR GLN ARG GLY GLY GLY ALA VAL GLY LYS ASN SEQRES 2 B 38 ARG ARG GLY GLY ARG GLY GLY ASN ARG GLY GLY ARG ASN SEQRES 3 B 38 ASN ASN SER THR ARG PHE ASN PRO LEU ALA LYS ALA HELIX 1 1 ASP A 8 GLN A 23 1 16 HELIX 2 2 ASP A 26 GLN A 42 1 17 HELIX 3 3 ASP A 45 LYS A 56 1 12 HELIX 4 4 ASP A 61 ALA A 78 1 18 HELIX 5 5 PRO A 84 ASN A 98 1 15 HELIX 6 6 SER A 103 GLY A 121 1 19 HELIX 7 7 ASP A 128 ASP A 138 1 11 HELIX 8 8 ASP A 141 ASP A 164 1 24 HELIX 9 9 SER A 165 ASP A 169 5 5 HELIX 10 10 PRO A 171 PHE A 182 1 12 HELIX 11 11 PHE A 183 HIS A 185 5 3 HELIX 12 12 SER A 187 GLN A 200 1 14 HELIX 13 13 THR A 206 LEU A 211 1 6 HELIX 14 14 HIS A 212 ALA A 222 1 11 HELIX 15 15 GLU A 228 ARG A 246 1 19 HELIX 16 16 ARG A 246 LEU A 251 1 6 HELIX 17 17 HIS A 253 THR A 265 1 13 HELIX 18 18 ASP A 269 ALA A 284 1 16 HELIX 19 19 ILE A 288 VAL A 294 1 7 HELIX 20 20 HIS A 296 MET A 308 1 13 HELIX 21 21 SER A 311 LEU A 318 1 8 HELIX 22 22 ASN A 374 TYR A 390 1 17 HELIX 23 23 ARG A 391 GLU A 393 5 3 HELIX 24 24 LEU A 394 HIS A 408 1 15 HELIX 25 25 GLU A 410 ALA A 425 1 16 HELIX 26 26 CYS A 428 ILE A 433 1 6 HELIX 27 27 TYR A 435 LEU A 447 1 13 HELIX 28 28 LYS A 451 TYR A 465 1 15 HELIX 29 29 TYR A 465 SER A 471 1 7 HELIX 30 30 TYR A 477 ILE A 489 1 13 HELIX 31 31 ASN A 493 CYS A 512 1 20 HELIX 32 32 THR A 513 PRO A 517 5 5 HELIX 33 33 TYR A 518 TYR A 533 1 16 HELIX 34 34 HIS A 535 GLY A 553 1 19 HELIX 35 35 HIS A 554 ASN A 557 5 4 HELIX 36 36 LYS A 558 LEU A 576 1 19 HELIX 37 37 ASP A 582 GLN A 598 1 17 HELIX 38 38 SER A 599 TYR A 604 5 6 HELIX 39 39 CYS A 605 GLN A 629 1 25 HELIX 40 40 ASP A 637 LEU A 655 1 19 HELIX 41 41 GLY A 656 ASN A 658 5 3 HELIX 42 42 ILE A 659 ARG A 665 1 7 HELIX 43 43 ASN A 667 MET A 676 1 10 HELIX 44 44 MET A 680 PHE A 699 1 20 HELIX 45 45 GLN A 700 PRO A 704 5 5 HELIX 46 46 CYS A 705 ASN A 716 1 12 HELIX 47 47 PHE A 721 GLY A 740 1 20 HELIX 48 48 ILE A 741 GLN A 744 5 4 HELIX 49 49 ILE A 747 ARG A 760 1 14 HELIX 50 50 PRO A 764 CYS A 782 1 19 HELIX 51 51 CYS A 782 ALA A 787 1 6 HELIX 52 52 MET A 789 ARG A 802 1 14 HELIX 53 53 ASN A 807 ASN A 824 1 18 HELIX 54 54 SER A 826 ASP A 831 1 6 HELIX 55 55 ASP A 831 ALA A 840 1 10 HELIX 56 56 LYS A 846 ASP A 874 1 29 HELIX 57 57 PRO A 877 TYR A 888 1 12 CRYST1 132.234 172.383 68.443 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014611 0.00000