HEADER DNA BINDING PROTEIN 13-MAR-13 4JLZ TITLE STRUCTURE OF PORCINE CGAS IN COMPLEX WITH BOUND UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 135-495; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIGS,SWINE,WILD BOAR; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.CIVRIL,K.P.HOPFNER REVDAT 3 20-MAR-24 4JLZ 1 REMARK SEQADV LINK REVDAT 2 10-JUL-13 4JLZ 1 JRNL REVDAT 1 12-JUN-13 4JLZ 0 JRNL AUTH F.CIVRIL,T.DEIMLING,C.C.O.MANN,A.ABLASSER,M.MOLDT,G.WITTE, JRNL AUTH 2 V.HORNUNG,K.P.HOPFNER JRNL TITL STRUCTURAL MECHANISM OF CYTOSOLIC DNA SENSING BY CGAS JRNL REF NATURE V. 498 332 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23722159 JRNL DOI 10.1038/NATURE12305 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 72224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5641 - 6.7166 0.96 2628 143 0.1678 0.1967 REMARK 3 2 6.7166 - 5.3341 0.95 2630 136 0.1835 0.1749 REMARK 3 3 5.3341 - 4.6606 0.94 2594 137 0.1322 0.1572 REMARK 3 4 4.6606 - 4.2349 0.95 2602 136 0.1302 0.1672 REMARK 3 5 4.2349 - 3.9315 0.95 2615 139 0.1437 0.1974 REMARK 3 6 3.9315 - 3.6998 0.94 2597 135 0.1456 0.1592 REMARK 3 7 3.6998 - 3.5146 0.92 2507 134 0.1615 0.2046 REMARK 3 8 3.5146 - 3.3617 0.95 2631 133 0.1663 0.1907 REMARK 3 9 3.3617 - 3.2323 0.97 2661 142 0.1613 0.2292 REMARK 3 10 3.2323 - 3.1208 0.97 2696 141 0.1721 0.2082 REMARK 3 11 3.1208 - 3.0232 0.98 2722 144 0.1767 0.2236 REMARK 3 12 3.0232 - 2.9368 0.98 2712 138 0.1806 0.2123 REMARK 3 13 2.9368 - 2.8595 0.98 2678 141 0.1876 0.2302 REMARK 3 14 2.8595 - 2.7898 0.97 2676 141 0.1806 0.1936 REMARK 3 15 2.7898 - 2.7264 0.96 2666 141 0.1951 0.2674 REMARK 3 16 2.7264 - 2.6684 0.96 2652 142 0.1922 0.2205 REMARK 3 17 2.6684 - 2.6150 0.96 2641 137 0.2046 0.2486 REMARK 3 18 2.6150 - 2.5656 0.98 2722 146 0.2088 0.2306 REMARK 3 19 2.5656 - 2.5198 0.98 2694 134 0.2138 0.2804 REMARK 3 20 2.5198 - 2.4771 0.98 2670 137 0.2283 0.3134 REMARK 3 21 2.4771 - 2.4372 0.98 2690 142 0.2300 0.2884 REMARK 3 22 2.4372 - 2.3997 0.98 2756 144 0.2334 0.2857 REMARK 3 23 2.3997 - 2.3644 0.97 2678 141 0.2388 0.2851 REMARK 3 24 2.3644 - 2.3311 0.98 2652 141 0.2492 0.3094 REMARK 3 25 2.3311 - 2.2996 0.97 2666 137 0.2630 0.3124 REMARK 3 26 2.2996 - 2.2700 0.80 2194 112 0.2935 0.3061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6173 REMARK 3 ANGLE : 1.239 8329 REMARK 3 CHIRALITY : 0.079 887 REMARK 3 PLANARITY : 0.006 1053 REMARK 3 DIHEDRAL : 15.489 2370 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 135 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0812 -10.9380 -1.2014 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.2643 REMARK 3 T33: 0.2623 T12: -0.0162 REMARK 3 T13: -0.0040 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 1.5867 L22: 2.0144 REMARK 3 L33: 2.7172 L12: -0.2687 REMARK 3 L13: -0.2026 L23: -0.9315 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.4784 S13: 0.2135 REMARK 3 S21: -0.1305 S22: -0.1016 S23: -0.3230 REMARK 3 S31: -0.1137 S32: 0.1268 S33: 0.1032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 248 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4169 -0.2387 -4.4688 REMARK 3 T TENSOR REMARK 3 T11: 0.2622 T22: 0.3252 REMARK 3 T33: 0.3108 T12: -0.0760 REMARK 3 T13: -0.0057 T23: 0.1081 REMARK 3 L TENSOR REMARK 3 L11: 8.0330 L22: 2.2476 REMARK 3 L33: 2.2163 L12: -0.7199 REMARK 3 L13: -1.9324 L23: -0.4715 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.3241 S13: 0.9767 REMARK 3 S21: -0.1386 S22: -0.1352 S23: -0.3390 REMARK 3 S31: -0.3819 S32: 0.1594 S33: 0.0861 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 304 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8321 -19.6644 5.2360 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.1882 REMARK 3 T33: 0.2257 T12: 0.0047 REMARK 3 T13: -0.0108 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 2.8893 L22: 4.7156 REMARK 3 L33: 2.8135 L12: 1.3370 REMARK 3 L13: -1.3869 L23: -2.3467 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: 0.3888 S13: 0.3038 REMARK 3 S21: 0.0103 S22: 0.0171 S23: -0.2596 REMARK 3 S31: -0.1138 S32: -0.1079 S33: 0.1167 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 383 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4355 -15.8788 23.0256 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.1509 REMARK 3 T33: 0.1748 T12: -0.0051 REMARK 3 T13: -0.0674 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 3.2884 L22: 2.1173 REMARK 3 L33: 2.7880 L12: -0.8136 REMARK 3 L13: -1.1936 L23: 1.3929 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.2892 S13: 0.4114 REMARK 3 S21: 0.2382 S22: 0.0642 S23: -0.2597 REMARK 3 S31: -0.2009 S32: 0.1703 S33: -0.0445 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 135 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.5093 -2.4743 17.2059 REMARK 3 T TENSOR REMARK 3 T11: 0.2077 T22: 0.1805 REMARK 3 T33: 0.1878 T12: 0.0478 REMARK 3 T13: -0.0472 T23: -0.0725 REMARK 3 L TENSOR REMARK 3 L11: 1.9450 L22: 4.5887 REMARK 3 L33: 4.4461 L12: 0.2680 REMARK 3 L13: -0.3187 L23: -2.4861 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: 0.0618 S13: -0.0059 REMARK 3 S21: -0.0772 S22: 0.1234 S23: -0.0825 REMARK 3 S31: 0.0963 S32: 0.1195 S33: -0.0011 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 200 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -61.5835 -6.0456 24.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.2719 T22: 0.2723 REMARK 3 T33: 0.2716 T12: 0.0478 REMARK 3 T13: 0.0320 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.6369 L22: 1.5656 REMARK 3 L33: 3.6420 L12: 0.1894 REMARK 3 L13: 1.6661 L23: 0.3637 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: -0.5825 S13: -0.0244 REMARK 3 S21: 0.4350 S22: 0.0333 S23: 0.3029 REMARK 3 S31: 0.0040 S32: -0.6631 S33: 0.0206 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 366 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.2192 10.4893 4.6566 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.2049 REMARK 3 T33: 0.1900 T12: 0.0402 REMARK 3 T13: -0.0891 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.0925 L22: 3.1401 REMARK 3 L33: 2.1916 L12: 0.0593 REMARK 3 L13: -0.4557 L23: 1.1707 REMARK 3 S TENSOR REMARK 3 S11: 0.0874 S12: 0.0610 S13: 0.1697 REMARK 3 S21: -0.2630 S22: -0.1790 S23: 0.2636 REMARK 3 S31: -0.5866 S32: -0.1915 S33: 0.0791 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72224 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.28000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.47950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.84650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.47950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.84650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 132 REMARK 465 ALA A 133 REMARK 465 MET A 134 REMARK 465 GLY B 132 REMARK 465 ALA B 133 REMARK 465 MET B 134 REMARK 465 LYS B 229 REMARK 465 ARG B 230 REMARK 465 ASN B 231 REMARK 465 PRO B 232 REMARK 465 GLY B 233 REMARK 465 GLY B 234 REMARK 465 ASN B 235 REMARK 465 LYS B 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 242 N GLU B 244 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 218 -158.62 -153.72 REMARK 500 GLU A 244 -15.37 86.56 REMARK 500 TRP B 320 -65.74 -95.91 REMARK 500 ASN B 436 33.03 -97.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 202 OD2 REMARK 620 2 ASP A 202 OD1 53.4 REMARK 620 3 UTP A 503 O3G 101.5 126.3 REMARK 620 4 UTP A 503 O1A 87.9 117.0 106.7 REMARK 620 5 UTP A 503 O2B 164.8 141.1 73.3 80.2 REMARK 620 6 HOH A 649 O 108.3 64.9 86.8 156.7 85.9 REMARK 620 7 HOH A 743 O 100.1 64.7 157.8 79.2 87.0 81.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 367 NE2 REMARK 620 2 CYS A 373 SG 114.0 REMARK 620 3 CYS A 374 SG 104.4 129.4 REMARK 620 4 CYS A 381 SG 101.4 100.2 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 202 OD2 REMARK 620 2 ASP B 202 OD1 48.1 REMARK 620 3 UTP B 503 O1A 97.7 104.8 REMARK 620 4 UTP B 503 O2G 81.8 129.7 83.1 REMARK 620 5 UTP B 503 O2B 155.0 156.8 79.8 73.2 REMARK 620 6 HOH B 632 O 87.6 94.3 158.5 77.1 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 367 NE2 REMARK 620 2 CYS B 373 SG 111.9 REMARK 620 3 CYS B 374 SG 105.3 130.2 REMARK 620 4 CYS B 381 SG 97.9 100.9 105.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JLX RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICTS (ASP 268 AND THR 269) ARE DUE TO POLYMORPHISM AS IT REMARK 999 IS NATURALLY OCCURRING. DBREF 4JLZ A 135 497 UNP I3LM39 I3LM39_PIG 135 495 DBREF 4JLZ B 135 497 UNP I3LM39 I3LM39_PIG 135 495 SEQADV 4JLZ GLY A 132 UNP I3LM39 EXPRESSION TAG SEQADV 4JLZ ALA A 133 UNP I3LM39 EXPRESSION TAG SEQADV 4JLZ MET A 134 UNP I3LM39 EXPRESSION TAG SEQADV 4JLZ ASP A 268 UNP I3LM39 SEE REMARK 999 SEQADV 4JLZ THR A 269 UNP I3LM39 SEE REMARK 999 SEQADV 4JLZ GLY B 132 UNP I3LM39 EXPRESSION TAG SEQADV 4JLZ ALA B 133 UNP I3LM39 EXPRESSION TAG SEQADV 4JLZ MET B 134 UNP I3LM39 EXPRESSION TAG SEQADV 4JLZ ASP B 268 UNP I3LM39 SEE REMARK 999 SEQADV 4JLZ THR B 269 UNP I3LM39 SEE REMARK 999 SEQRES 1 A 366 GLY ALA MET GLY ALA TRP LYS LEU GLN THR VAL LEU GLU SEQRES 2 A 366 LYS VAL ARG LEU SER ARG HIS GLU ILE SER GLU ALA ALA SEQRES 3 A 366 GLU VAL VAL ASN TRP VAL VAL GLU HIS LEU LEU ARG ARG SEQRES 4 A 366 LEU GLN GLY GLY GLU SER GLU PHE LYS GLY VAL ALA LEU SEQRES 5 A 366 LEU ARG THR GLY SER TYR TYR GLU ARG VAL LYS ILE SER SEQRES 6 A 366 ALA PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL SEQRES 7 A 366 PRO ARG ILE GLN LEU GLU GLU TYR CYS ASN SER GLY ALA SEQRES 8 A 366 HIS TYR PHE VAL LYS PHE LYS ARG ASN PRO GLY GLY ASN SEQRES 9 A 366 PRO LEU GLU GLN PHE LEU GLU LYS GLU ILE LEU SER ALA SEQRES 10 A 366 SER LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU SEQRES 11 A 366 GLU ILE LYS ASN ILE GLU ASP THR GLY VAL THR VAL GLU SEQRES 12 A 366 ARG LYS ARG ARG GLY SER PRO ALA VAL THR LEU LEU ILE SEQRES 13 A 366 SER LYS PRO LYS GLU ILE SER VAL ASP ILE ILE LEU ALA SEQRES 14 A 366 LEU GLU SER LYS SER SER TRP PRO ALA SER THR GLN LYS SEQRES 15 A 366 GLY LEU PRO ILE SER GLN TRP LEU GLY ALA LYS VAL LYS SEQRES 16 A 366 ASN ASN LEU LYS ARG GLN PRO PHE TYR LEU VAL PRO LYS SEQRES 17 A 366 HIS ALA LYS GLU GLY SER GLY PHE GLN GLU GLU THR TRP SEQRES 18 A 366 ARG LEU SER PHE SER HIS ILE GLU LYS ASP ILE LEU LYS SEQRES 19 A 366 ASN HIS GLY GLN SER LYS THR CYS CYS GLU ILE ASP GLY SEQRES 20 A 366 VAL LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS SEQRES 21 A 366 TYR LEU LEU GLU GLN LEU LYS LYS LYS PHE GLY ASN ARG SEQRES 22 A 366 ARG GLU LEU ALA LYS PHE CYS SER TYR HIS VAL LYS THR SEQRES 23 A 366 ALA PHE PHE HIS VAL CYS THR GLN ASP PRO HIS ASP ASN SEQRES 24 A 366 GLN TRP HIS LEU LYS ASN LEU GLU CYS CYS PHE ASP ASN SEQRES 25 A 366 CYS VAL ALA TYR PHE LEU GLN CYS LEU LYS THR GLU GLN SEQRES 26 A 366 LEU ALA ASN TYR PHE ILE PRO GLY VAL ASN LEU PHE SER SEQRES 27 A 366 ARG ASP LEU ILE ASP LYS PRO SER LYS GLU PHE LEU SER SEQRES 28 A 366 LYS GLN ILE GLU TYR GLU ARG ASN ASN GLY PHE PRO VAL SEQRES 29 A 366 PHE TRP SEQRES 1 B 366 GLY ALA MET GLY ALA TRP LYS LEU GLN THR VAL LEU GLU SEQRES 2 B 366 LYS VAL ARG LEU SER ARG HIS GLU ILE SER GLU ALA ALA SEQRES 3 B 366 GLU VAL VAL ASN TRP VAL VAL GLU HIS LEU LEU ARG ARG SEQRES 4 B 366 LEU GLN GLY GLY GLU SER GLU PHE LYS GLY VAL ALA LEU SEQRES 5 B 366 LEU ARG THR GLY SER TYR TYR GLU ARG VAL LYS ILE SER SEQRES 6 B 366 ALA PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL SEQRES 7 B 366 PRO ARG ILE GLN LEU GLU GLU TYR CYS ASN SER GLY ALA SEQRES 8 B 366 HIS TYR PHE VAL LYS PHE LYS ARG ASN PRO GLY GLY ASN SEQRES 9 B 366 PRO LEU GLU GLN PHE LEU GLU LYS GLU ILE LEU SER ALA SEQRES 10 B 366 SER LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU SEQRES 11 B 366 GLU ILE LYS ASN ILE GLU ASP THR GLY VAL THR VAL GLU SEQRES 12 B 366 ARG LYS ARG ARG GLY SER PRO ALA VAL THR LEU LEU ILE SEQRES 13 B 366 SER LYS PRO LYS GLU ILE SER VAL ASP ILE ILE LEU ALA SEQRES 14 B 366 LEU GLU SER LYS SER SER TRP PRO ALA SER THR GLN LYS SEQRES 15 B 366 GLY LEU PRO ILE SER GLN TRP LEU GLY ALA LYS VAL LYS SEQRES 16 B 366 ASN ASN LEU LYS ARG GLN PRO PHE TYR LEU VAL PRO LYS SEQRES 17 B 366 HIS ALA LYS GLU GLY SER GLY PHE GLN GLU GLU THR TRP SEQRES 18 B 366 ARG LEU SER PHE SER HIS ILE GLU LYS ASP ILE LEU LYS SEQRES 19 B 366 ASN HIS GLY GLN SER LYS THR CYS CYS GLU ILE ASP GLY SEQRES 20 B 366 VAL LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS SEQRES 21 B 366 TYR LEU LEU GLU GLN LEU LYS LYS LYS PHE GLY ASN ARG SEQRES 22 B 366 ARG GLU LEU ALA LYS PHE CYS SER TYR HIS VAL LYS THR SEQRES 23 B 366 ALA PHE PHE HIS VAL CYS THR GLN ASP PRO HIS ASP ASN SEQRES 24 B 366 GLN TRP HIS LEU LYS ASN LEU GLU CYS CYS PHE ASP ASN SEQRES 25 B 366 CYS VAL ALA TYR PHE LEU GLN CYS LEU LYS THR GLU GLN SEQRES 26 B 366 LEU ALA ASN TYR PHE ILE PRO GLY VAL ASN LEU PHE SER SEQRES 27 B 366 ARG ASP LEU ILE ASP LYS PRO SER LYS GLU PHE LEU SER SEQRES 28 B 366 LYS GLN ILE GLU TYR GLU ARG ASN ASN GLY PHE PRO VAL SEQRES 29 B 366 PHE TRP HET ZN A 501 1 HET MG A 502 1 HET UTP A 503 29 HET ZN B 501 1 HET MG B 502 1 HET UTP B 503 29 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM UTP URIDINE 5'-TRIPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 UTP 2(C9 H15 N2 O15 P3) FORMUL 9 HOH *275(H2 O) HELIX 1 1 LYS A 138 LEU A 148 1 11 HELIX 2 2 SER A 149 GLY A 173 1 25 HELIX 3 3 SER A 176 VAL A 181 5 6 HELIX 4 4 LEU A 237 GLN A 239 5 3 HELIX 5 5 SER A 247 ILE A 266 1 20 HELIX 6 6 GLU A 267 THR A 269 5 3 HELIX 7 7 PRO A 308 GLN A 312 5 5 HELIX 8 8 GLY A 322 ARG A 331 1 10 HELIX 9 9 GLY A 346 GLU A 350 5 5 HELIX 10 10 PHE A 356 ASN A 366 1 11 HELIX 11 11 CYS A 382 GLY A 402 1 21 HELIX 12 12 CYS A 411 ASP A 426 1 16 HELIX 13 13 HIS A 428 LYS A 435 5 8 HELIX 14 14 ASN A 436 GLU A 455 1 20 HELIX 15 15 ASP A 474 ASN A 491 1 18 HELIX 16 16 GLY A 492 TRP A 497 5 6 HELIX 17 17 LYS B 138 GLY B 174 1 37 HELIX 18 18 LEU B 237 LEU B 241 5 5 HELIX 19 19 SER B 247 GLU B 267 1 21 HELIX 20 20 PRO B 308 GLN B 312 5 5 HELIX 21 21 GLY B 322 ARG B 331 1 10 HELIX 22 22 PHE B 356 ASN B 366 1 11 HELIX 23 23 CYS B 382 GLY B 402 1 21 HELIX 24 24 ARG B 404 LYS B 409 1 6 HELIX 25 25 CYS B 411 ASP B 426 1 16 HELIX 26 26 HIS B 428 LYS B 435 5 8 HELIX 27 27 ASN B 436 GLU B 455 1 20 HELIX 28 28 ASP B 474 ASN B 491 1 18 HELIX 29 29 GLY B 492 TRP B 497 5 6 SHEET 1 A 5 ALA A 182 LEU A 184 0 SHEET 2 A 5 GLU A 200 GLU A 208 -1 O MET A 204 N LEU A 184 SHEET 3 A 5 ILE A 293 SER A 303 1 O GLU A 302 N LEU A 207 SHEET 4 A 5 VAL A 283 ILE A 287 -1 N LEU A 285 O VAL A 295 SHEET 5 A 5 VAL A 271 VAL A 273 -1 N THR A 272 O LEU A 286 SHEET 1 B 5 ALA A 182 LEU A 184 0 SHEET 2 B 5 GLU A 200 GLU A 208 -1 O MET A 204 N LEU A 184 SHEET 3 B 5 ILE A 293 SER A 303 1 O GLU A 302 N LEU A 207 SHEET 4 B 5 PHE A 334 PRO A 338 -1 O LEU A 336 N LEU A 301 SHEET 5 B 5 TRP A 352 SER A 355 -1 O ARG A 353 N VAL A 337 SHEET 1 C 2 ILE A 212 GLU A 216 0 SHEET 2 C 2 TYR A 224 PHE A 228 -1 O PHE A 225 N GLU A 215 SHEET 1 D 2 LEU A 241 GLU A 242 0 SHEET 2 D 2 ILE A 245 LEU A 246 -1 O ILE A 245 N GLU A 242 SHEET 1 E 7 ALA B 182 LEU B 184 0 SHEET 2 E 7 GLU B 200 GLU B 208 -1 O LYS B 206 N ALA B 182 SHEET 3 E 7 GLU B 292 SER B 303 1 O ASP B 296 N VAL B 203 SHEET 4 E 7 PHE B 334 PRO B 338 -1 O LEU B 336 N LEU B 301 SHEET 5 E 7 TRP B 352 SER B 355 -1 O ARG B 353 N VAL B 337 SHEET 6 E 7 HIS B 223 LYS B 227 -1 N TYR B 224 O TRP B 352 SHEET 7 E 7 GLN B 213 GLU B 216 -1 N GLN B 213 O LYS B 227 SHEET 1 F 5 ALA B 182 LEU B 184 0 SHEET 2 F 5 GLU B 200 GLU B 208 -1 O LYS B 206 N ALA B 182 SHEET 3 F 5 GLU B 292 SER B 303 1 O ASP B 296 N VAL B 203 SHEET 4 F 5 ALA B 282 SER B 288 -1 N ILE B 287 O ILE B 293 SHEET 5 F 5 VAL B 271 VAL B 273 -1 N THR B 272 O LEU B 286 SHEET 1 G 2 ALA B 341 LYS B 342 0 SHEET 2 G 2 PHE B 347 GLN B 348 -1 O GLN B 348 N ALA B 341 LINK OD2AASP A 202 MG MG A 502 1555 1555 2.31 LINK OD1AASP A 202 MG MG A 502 1555 1555 2.55 LINK NE2 HIS A 367 ZN ZN A 501 1555 1555 2.11 LINK SG CYS A 373 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 374 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 381 ZN ZN A 501 1555 1555 2.35 LINK MG MG A 502 O3G UTP A 503 1555 1555 2.12 LINK MG MG A 502 O1A UTP A 503 1555 1555 2.15 LINK MG MG A 502 O2B UTP A 503 1555 1555 2.29 LINK MG MG A 502 O HOH A 649 1555 1555 2.62 LINK MG MG A 502 O HOH A 743 1555 1555 2.25 LINK OD2 ASP B 202 MG MG B 502 1555 1555 2.48 LINK OD1 ASP B 202 MG MG B 502 1555 1555 2.87 LINK NE2 HIS B 367 ZN ZN B 501 1555 1555 2.14 LINK SG CYS B 373 ZN ZN B 501 1555 1555 2.46 LINK SG CYS B 374 ZN ZN B 501 1555 1555 2.28 LINK SG CYS B 381 ZN ZN B 501 1555 1555 2.41 LINK MG MG B 502 O1A UTP B 503 1555 1555 2.04 LINK MG MG B 502 O2G UTP B 503 1555 1555 2.26 LINK MG MG B 502 O2B UTP B 503 1555 1555 2.29 LINK MG MG B 502 O HOH B 632 1555 1555 2.37 CISPEP 1 LYS A 289 PRO A 290 0 5.21 CISPEP 2 LYS B 289 PRO B 290 0 0.68 SITE 1 AC1 4 HIS A 367 CYS A 373 CYS A 374 CYS A 381 SITE 1 AC2 4 ASP A 202 UTP A 503 HOH A 649 HOH A 743 SITE 1 AC3 14 GLY A 187 SER A 188 GLU A 191 ASP A 202 SITE 2 AC3 14 ARG A 353 SER A 412 TYR A 413 LYS A 416 SITE 3 AC3 14 MG A 502 HOH A 604 HOH A 628 HOH A 652 SITE 4 AC3 14 HOH A 695 HOH A 743 SITE 1 AC4 4 HIS B 367 CYS B 373 CYS B 374 CYS B 381 SITE 1 AC5 3 ASP B 202 UTP B 503 HOH B 632 SITE 1 AC6 16 GLY B 187 SER B 188 ASP B 202 ARG B 353 SITE 2 AC6 16 SER B 412 TYR B 413 LYS B 416 ASN B 459 SITE 3 AC6 16 MG B 502 HOH B 629 HOH B 632 HOH B 642 SITE 4 AC6 16 HOH B 651 HOH B 660 HOH B 690 HOH B 695 CRYST1 80.560 97.693 106.959 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009349 0.00000