data_4JPD # _entry.id 4JPD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JPD pdb_00004jpd 10.2210/pdb4jpd/pdb RCSB RCSB078335 ? ? WWPDB D_1000078335 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id SSGCID-BuceA.18084.a _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4JPD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'The structure of CyaY from Burkholderia cenocepacia' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clifton, M.C.' 1 ? primary 'Davies, D.' 2 ? primary 'Sankaran, B.' 3 ? # _cell.length_a 96.020 _cell.length_b 96.020 _cell.length_c 96.020 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4JPD _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 3 2' _symmetry.entry_id 4JPD _symmetry.Int_Tables_number 212 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein CyaY' 12236.501 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 115 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSMSDTEYLARAEAVLAAVERTVDVANDGDHDIDLERNGSVLTLTFENGSKIIVNLQPPMKEVWIAAKAGGFHYRFID GEWRDTRTGTEFFSALTDYATQQAGLPITFSA ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSMSDTEYLARAEAVLAAVERTVDVANDGDHDIDLERNGSVLTLTFENGSKIIVNLQPPMKEVWIAAKAGGFHYRFID GEWRDTRTGTEFFSALTDYATQQAGLPITFSA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier SSGCID-BuceA.18084.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 SER n 1 7 ASP n 1 8 THR n 1 9 GLU n 1 10 TYR n 1 11 LEU n 1 12 ALA n 1 13 ARG n 1 14 ALA n 1 15 GLU n 1 16 ALA n 1 17 VAL n 1 18 LEU n 1 19 ALA n 1 20 ALA n 1 21 VAL n 1 22 GLU n 1 23 ARG n 1 24 THR n 1 25 VAL n 1 26 ASP n 1 27 VAL n 1 28 ALA n 1 29 ASN n 1 30 ASP n 1 31 GLY n 1 32 ASP n 1 33 HIS n 1 34 ASP n 1 35 ILE n 1 36 ASP n 1 37 LEU n 1 38 GLU n 1 39 ARG n 1 40 ASN n 1 41 GLY n 1 42 SER n 1 43 VAL n 1 44 LEU n 1 45 THR n 1 46 LEU n 1 47 THR n 1 48 PHE n 1 49 GLU n 1 50 ASN n 1 51 GLY n 1 52 SER n 1 53 LYS n 1 54 ILE n 1 55 ILE n 1 56 VAL n 1 57 ASN n 1 58 LEU n 1 59 GLN n 1 60 PRO n 1 61 PRO n 1 62 MET n 1 63 LYS n 1 64 GLU n 1 65 VAL n 1 66 TRP n 1 67 ILE n 1 68 ALA n 1 69 ALA n 1 70 LYS n 1 71 ALA n 1 72 GLY n 1 73 GLY n 1 74 PHE n 1 75 HIS n 1 76 TYR n 1 77 ARG n 1 78 PHE n 1 79 ILE n 1 80 ASP n 1 81 GLY n 1 82 GLU n 1 83 TRP n 1 84 ARG n 1 85 ASP n 1 86 THR n 1 87 ARG n 1 88 THR n 1 89 GLY n 1 90 THR n 1 91 GLU n 1 92 PHE n 1 93 PHE n 1 94 SER n 1 95 ALA n 1 96 LEU n 1 97 THR n 1 98 ASP n 1 99 TYR n 1 100 ALA n 1 101 THR n 1 102 GLN n 1 103 GLN n 1 104 ALA n 1 105 GLY n 1 106 LEU n 1 107 PRO n 1 108 ILE n 1 109 THR n 1 110 PHE n 1 111 SER n 1 112 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'cyaY, BceJ2315_02750, BCAL0273' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'J2315 / LMG 16656' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia cenocepacia' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 216591 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYAY_BURCJ _struct_ref.pdbx_db_accession B4E5Z6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSDTEYLARAEAVLAAVERTVDVANDGDHDIDLERNGSVLTLTFENGSKIIVNLQPPMKEVWIAAKAGGFHYRFIDGEWR DTRTGTEFFSALTDYATQQAGLPITFSA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JPD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B4E5Z6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 108 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JPD GLY A 1 ? UNP B4E5Z6 ? ? 'expression tag' -3 1 1 4JPD PRO A 2 ? UNP B4E5Z6 ? ? 'expression tag' -2 2 1 4JPD GLY A 3 ? UNP B4E5Z6 ? ? 'expression tag' -1 3 1 4JPD SER A 4 ? UNP B4E5Z6 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4JPD _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;50% PEG400, 200mM LiSO4, 100mM Na acetate, 9.46mg/ml BuceA.18084.a.PW33863, direct cryoprotection, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-10-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 # _reflns.entry_id 4JPD _reflns.d_resolution_high 1.90 _reflns.number_obs 11700 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_netI_over_sigmaI 21.420 _reflns.percent_possible_obs 100.000 _reflns.B_iso_Wilson_estimate 20.707 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.9800 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 2.000 11845 ? 836 0.437 6.750 ? ? ? ? ? 100.000 1 1 2.000 2.060 11425 ? 800 0.374 7.890 ? ? ? ? ? 100.000 2 1 2.060 2.120 11224 ? 787 0.306 9.740 ? ? ? ? ? 100.000 3 1 2.120 2.180 10931 ? 770 0.274 10.860 ? ? ? ? ? 100.000 4 1 2.180 2.250 10432 ? 738 0.229 12.840 ? ? ? ? ? 100.000 5 1 2.250 2.330 10496 ? 739 0.211 13.740 ? ? ? ? ? 100.000 6 1 2.330 2.420 9785 ? 694 0.188 14.980 ? ? ? ? ? 100.000 7 1 2.420 2.520 9445 ? 671 0.165 17.350 ? ? ? ? ? 100.000 8 1 2.520 2.630 9168 ? 650 0.147 18.970 ? ? ? ? ? 100.000 9 1 2.630 2.760 8790 ? 629 0.136 19.870 ? ? ? ? ? 100.000 10 1 2.760 2.910 8438 ? 603 0.106 25.100 ? ? ? ? ? 100.000 11 1 2.910 3.080 7822 ? 566 0.092 27.500 ? ? ? ? ? 100.000 12 1 3.080 3.300 7418 ? 539 0.081 30.790 ? ? ? ? ? 100.000 13 1 3.300 3.560 6814 ? 504 0.063 37.770 ? ? ? ? ? 100.000 14 1 3.560 3.900 6208 ? 462 0.058 39.340 ? ? ? ? ? 100.000 15 1 3.900 4.360 5701 ? 440 0.050 43.370 ? ? ? ? ? 100.000 16 1 4.360 5.040 5029 ? 380 0.046 47.910 ? ? ? ? ? 100.000 17 1 5.040 6.170 4349 ? 337 0.060 37.290 ? ? ? ? ? 100.000 18 1 6.170 8.720 3380 ? 273 0.050 40.840 ? ? ? ? ? 100.000 19 1 # _refine.entry_id 4JPD _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 42.9800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.4100 _refine.ls_number_reflns_obs 11700 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1640 _refine.ls_R_factor_R_work 0.1624 _refine.ls_wR_factor_R_work 0.1405 _refine.ls_R_factor_R_free 0.1959 _refine.ls_wR_factor_R_free 0.1688 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 584 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.3399 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9550 _refine.correlation_coeff_Fo_to_Fc_free 0.9390 _refine.overall_SU_R_Cruickshank_DPI 0.1130 _refine.overall_SU_R_free 0.1108 _refine.pdbx_overall_ESU_R 0.1130 _refine.pdbx_overall_ESU_R_Free 0.1110 _refine.overall_SU_ML 0.0620 _refine.overall_SU_B 3.8890 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 1EW4' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8886 _refine.B_iso_max 55.810 _refine.B_iso_min 4.430 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.330 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 832 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 961 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 42.9800 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 898 0.011 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 821 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1234 1.349 1.948 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1882 0.775 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 122 5.785 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 43 37.008 24.186 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 135 11.243 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 13.889 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 142 0.083 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1060 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 214 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 451 0.895 0.893 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 448 0.869 0.883 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 563 1.548 1.314 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9490 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.6500 _refine_ls_shell.number_reflns_R_work 805 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1860 _refine_ls_shell.R_factor_R_free 0.2280 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 841 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4JPD _struct.title 'The structure of CyaY from Burkholderia cenocepacia' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JPD _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'SSGCID, Seattle Structural Genomics Center for Infectious Disease, CyaY, Frataxin, iron binding protein, METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 7 ? GLY A 31 ? ASP A 3 GLY A 27 1 ? 25 HELX_P HELX_P2 2 PRO A 60 ? MET A 62 ? PRO A 56 MET A 58 5 ? 3 HELX_P HELX_P3 3 GLU A 91 ? GLY A 105 ? GLU A 87 GLY A 101 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 36 ? ASN A 40 ? ASP A 32 ASN A 36 A 2 VAL A 43 ? THR A 47 ? VAL A 39 THR A 43 A 3 LYS A 53 ? GLN A 59 ? LYS A 49 GLN A 55 A 4 GLU A 64 ? ALA A 69 ? GLU A 60 ALA A 65 A 5 GLY A 72 ? ILE A 79 ? GLY A 68 ILE A 75 A 6 GLU A 82 ? ASP A 85 ? GLU A 78 ASP A 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 38 ? N GLU A 34 O THR A 45 ? O THR A 41 A 2 3 N LEU A 46 ? N LEU A 42 O ILE A 54 ? O ILE A 50 A 3 4 N ASN A 57 ? N ASN A 53 O TRP A 66 ? O TRP A 62 A 4 5 N ALA A 69 ? N ALA A 65 O GLY A 72 ? O GLY A 68 A 5 6 N ILE A 79 ? N ILE A 75 O GLU A 82 ? O GLU A 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 201 ? 7 'BINDING SITE FOR RESIDUE ACT A 201' AC2 Software A ACT 202 ? 6 'BINDING SITE FOR RESIDUE ACT A 202' AC3 Software A NA 203 ? 3 'BINDING SITE FOR RESIDUE NA A 203' AC4 Software A SO4 204 ? 9 'BINDING SITE FOR RESIDUE SO4 A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HIS A 33 ? HIS A 29 . ? 1_555 ? 2 AC1 7 ASP A 34 ? ASP A 30 . ? 1_555 ? 3 AC1 7 ILE A 35 ? ILE A 31 . ? 1_555 ? 4 AC1 7 PHE A 48 ? PHE A 44 . ? 1_555 ? 5 AC1 7 GLU A 49 ? GLU A 45 . ? 1_555 ? 6 AC1 7 ALA A 104 ? ALA A 100 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH A 320 . ? 1_555 ? 8 AC2 6 HIS A 75 ? HIS A 71 . ? 1_555 ? 9 AC2 6 THR A 86 ? THR A 82 . ? 1_555 ? 10 AC2 6 ARG A 87 ? ARG A 83 . ? 1_555 ? 11 AC2 6 ARG A 87 ? ARG A 83 . ? 13_545 ? 12 AC2 6 HOH F . ? HOH A 313 . ? 13_545 ? 13 AC2 6 HOH F . ? HOH A 351 . ? 1_555 ? 14 AC3 3 GLY A 81 ? GLY A 77 . ? 5_555 ? 15 AC3 3 GLY A 81 ? GLY A 77 . ? 9_555 ? 16 AC3 3 GLY A 81 ? GLY A 77 . ? 1_555 ? 17 AC4 9 ARG A 13 ? ARG A 9 . ? 1_555 ? 18 AC4 9 ARG A 13 ? ARG A 9 . ? 9_555 ? 19 AC4 9 ARG A 13 ? ARG A 9 . ? 5_555 ? 20 AC4 9 HOH F . ? HOH A 370 . ? 9_555 ? 21 AC4 9 HOH F . ? HOH A 370 . ? 1_555 ? 22 AC4 9 HOH F . ? HOH A 370 . ? 5_555 ? 23 AC4 9 HOH F . ? HOH A 374 . ? 1_555 ? 24 AC4 9 HOH F . ? HOH A 374 . ? 5_555 ? 25 AC4 9 HOH F . ? HOH A 374 . ? 9_555 ? # _atom_sites.entry_id 4JPD _atom_sites.fract_transf_matrix[1][1] 0.010414 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010414 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010414 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 0 SER SER A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 SER 6 2 2 SER SER A . n A 1 7 ASP 7 3 3 ASP ASP A . n A 1 8 THR 8 4 4 THR THR A . n A 1 9 GLU 9 5 5 GLU GLU A . n A 1 10 TYR 10 6 6 TYR TYR A . n A 1 11 LEU 11 7 7 LEU LEU A . n A 1 12 ALA 12 8 8 ALA ALA A . n A 1 13 ARG 13 9 9 ARG ARG A . n A 1 14 ALA 14 10 10 ALA ALA A . n A 1 15 GLU 15 11 11 GLU GLU A . n A 1 16 ALA 16 12 12 ALA ALA A . n A 1 17 VAL 17 13 13 VAL VAL A . n A 1 18 LEU 18 14 14 LEU LEU A . n A 1 19 ALA 19 15 15 ALA ALA A . n A 1 20 ALA 20 16 16 ALA ALA A . n A 1 21 VAL 21 17 17 VAL VAL A . n A 1 22 GLU 22 18 18 GLU GLU A . n A 1 23 ARG 23 19 19 ARG ARG A . n A 1 24 THR 24 20 20 THR THR A . n A 1 25 VAL 25 21 21 VAL VAL A . n A 1 26 ASP 26 22 22 ASP ASP A . n A 1 27 VAL 27 23 23 VAL VAL A . n A 1 28 ALA 28 24 24 ALA ALA A . n A 1 29 ASN 29 25 25 ASN ASN A . n A 1 30 ASP 30 26 26 ASP ASP A . n A 1 31 GLY 31 27 27 GLY GLY A . n A 1 32 ASP 32 28 28 ASP ASP A . n A 1 33 HIS 33 29 29 HIS HIS A . n A 1 34 ASP 34 30 30 ASP ASP A . n A 1 35 ILE 35 31 31 ILE ILE A . n A 1 36 ASP 36 32 32 ASP ASP A . n A 1 37 LEU 37 33 33 LEU LEU A . n A 1 38 GLU 38 34 34 GLU GLU A . n A 1 39 ARG 39 35 35 ARG ARG A . n A 1 40 ASN 40 36 36 ASN ASN A . n A 1 41 GLY 41 37 37 GLY GLY A . n A 1 42 SER 42 38 38 SER SER A . n A 1 43 VAL 43 39 39 VAL VAL A . n A 1 44 LEU 44 40 40 LEU LEU A . n A 1 45 THR 45 41 41 THR THR A . n A 1 46 LEU 46 42 42 LEU LEU A . n A 1 47 THR 47 43 43 THR THR A . n A 1 48 PHE 48 44 44 PHE PHE A . n A 1 49 GLU 49 45 45 GLU GLU A . n A 1 50 ASN 50 46 46 ASN ASN A . n A 1 51 GLY 51 47 47 GLY GLY A . n A 1 52 SER 52 48 48 SER SER A . n A 1 53 LYS 53 49 49 LYS LYS A . n A 1 54 ILE 54 50 50 ILE ILE A . n A 1 55 ILE 55 51 51 ILE ILE A . n A 1 56 VAL 56 52 52 VAL VAL A . n A 1 57 ASN 57 53 53 ASN ASN A . n A 1 58 LEU 58 54 54 LEU LEU A . n A 1 59 GLN 59 55 55 GLN GLN A . n A 1 60 PRO 60 56 56 PRO PRO A . n A 1 61 PRO 61 57 57 PRO PRO A . n A 1 62 MET 62 58 58 MET MET A . n A 1 63 LYS 63 59 59 LYS LYS A . n A 1 64 GLU 64 60 60 GLU GLU A . n A 1 65 VAL 65 61 61 VAL VAL A . n A 1 66 TRP 66 62 62 TRP TRP A . n A 1 67 ILE 67 63 63 ILE ILE A . n A 1 68 ALA 68 64 64 ALA ALA A . n A 1 69 ALA 69 65 65 ALA ALA A . n A 1 70 LYS 70 66 66 LYS LYS A . n A 1 71 ALA 71 67 67 ALA ALA A . n A 1 72 GLY 72 68 68 GLY GLY A . n A 1 73 GLY 73 69 69 GLY GLY A . n A 1 74 PHE 74 70 70 PHE PHE A . n A 1 75 HIS 75 71 71 HIS HIS A . n A 1 76 TYR 76 72 72 TYR TYR A . n A 1 77 ARG 77 73 73 ARG ARG A . n A 1 78 PHE 78 74 74 PHE PHE A . n A 1 79 ILE 79 75 75 ILE ILE A . n A 1 80 ASP 80 76 76 ASP ASP A . n A 1 81 GLY 81 77 77 GLY GLY A . n A 1 82 GLU 82 78 78 GLU GLU A . n A 1 83 TRP 83 79 79 TRP TRP A . n A 1 84 ARG 84 80 80 ARG ARG A . n A 1 85 ASP 85 81 81 ASP ASP A . n A 1 86 THR 86 82 82 THR THR A . n A 1 87 ARG 87 83 83 ARG ARG A . n A 1 88 THR 88 84 84 THR THR A . n A 1 89 GLY 89 85 85 GLY GLY A . n A 1 90 THR 90 86 86 THR THR A . n A 1 91 GLU 91 87 87 GLU GLU A . n A 1 92 PHE 92 88 88 PHE PHE A . n A 1 93 PHE 93 89 89 PHE PHE A . n A 1 94 SER 94 90 90 SER SER A . n A 1 95 ALA 95 91 91 ALA ALA A . n A 1 96 LEU 96 92 92 LEU LEU A . n A 1 97 THR 97 93 93 THR THR A . n A 1 98 ASP 98 94 94 ASP ASP A . n A 1 99 TYR 99 95 95 TYR TYR A . n A 1 100 ALA 100 96 96 ALA ALA A . n A 1 101 THR 101 97 97 THR THR A . n A 1 102 GLN 102 98 98 GLN GLN A . n A 1 103 GLN 103 99 99 GLN GLN A . n A 1 104 ALA 104 100 100 ALA ALA A . n A 1 105 GLY 105 101 101 GLY GLY A . n A 1 106 LEU 106 102 102 LEU LEU A . n A 1 107 PRO 107 103 103 PRO PRO A . n A 1 108 ILE 108 104 104 ILE ILE A . n A 1 109 THR 109 105 105 THR THR A . n A 1 110 PHE 110 106 106 PHE PHE A . n A 1 111 SER 111 107 107 SER SER A . n A 1 112 ALA 112 108 108 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 201 1 ACT ACT A . C 2 ACT 1 202 2 ACT ACT A . D 3 NA 1 203 1 NA NA A . E 4 SO4 1 204 1 SO4 SO4 A . F 5 HOH 1 301 2 HOH HOH A . F 5 HOH 2 302 3 HOH HOH A . F 5 HOH 3 303 4 HOH HOH A . F 5 HOH 4 304 5 HOH HOH A . F 5 HOH 5 305 6 HOH HOH A . F 5 HOH 6 306 7 HOH HOH A . F 5 HOH 7 307 8 HOH HOH A . F 5 HOH 8 308 9 HOH HOH A . F 5 HOH 9 309 10 HOH HOH A . F 5 HOH 10 310 11 HOH HOH A . F 5 HOH 11 311 14 HOH HOH A . F 5 HOH 12 312 15 HOH HOH A . F 5 HOH 13 313 16 HOH HOH A . F 5 HOH 14 314 17 HOH HOH A . F 5 HOH 15 315 18 HOH HOH A . F 5 HOH 16 316 19 HOH HOH A . F 5 HOH 17 317 20 HOH HOH A . F 5 HOH 18 318 21 HOH HOH A . F 5 HOH 19 319 23 HOH HOH A . F 5 HOH 20 320 24 HOH HOH A . F 5 HOH 21 321 25 HOH HOH A . F 5 HOH 22 322 26 HOH HOH A . F 5 HOH 23 323 27 HOH HOH A . F 5 HOH 24 324 29 HOH HOH A . F 5 HOH 25 325 30 HOH HOH A . F 5 HOH 26 326 31 HOH HOH A . F 5 HOH 27 327 32 HOH HOH A . F 5 HOH 28 328 33 HOH HOH A . F 5 HOH 29 329 34 HOH HOH A . F 5 HOH 30 330 36 HOH HOH A . F 5 HOH 31 331 37 HOH HOH A . F 5 HOH 32 332 39 HOH HOH A . F 5 HOH 33 333 40 HOH HOH A . F 5 HOH 34 334 41 HOH HOH A . F 5 HOH 35 335 42 HOH HOH A . F 5 HOH 36 336 43 HOH HOH A . F 5 HOH 37 337 44 HOH HOH A . F 5 HOH 38 338 46 HOH HOH A . F 5 HOH 39 339 47 HOH HOH A . F 5 HOH 40 340 48 HOH HOH A . F 5 HOH 41 341 49 HOH HOH A . F 5 HOH 42 342 50 HOH HOH A . F 5 HOH 43 343 51 HOH HOH A . F 5 HOH 44 344 53 HOH HOH A . F 5 HOH 45 345 54 HOH HOH A . F 5 HOH 46 346 55 HOH HOH A . F 5 HOH 47 347 56 HOH HOH A . F 5 HOH 48 348 57 HOH HOH A . F 5 HOH 49 349 58 HOH HOH A . F 5 HOH 50 350 59 HOH HOH A . F 5 HOH 51 351 60 HOH HOH A . F 5 HOH 52 352 61 HOH HOH A . F 5 HOH 53 353 62 HOH HOH A . F 5 HOH 54 354 63 HOH HOH A . F 5 HOH 55 355 64 HOH HOH A . F 5 HOH 56 356 65 HOH HOH A . F 5 HOH 57 357 66 HOH HOH A . F 5 HOH 58 358 67 HOH HOH A . F 5 HOH 59 359 69 HOH HOH A . F 5 HOH 60 360 71 HOH HOH A . F 5 HOH 61 361 72 HOH HOH A . F 5 HOH 62 362 73 HOH HOH A . F 5 HOH 63 363 75 HOH HOH A . F 5 HOH 64 364 76 HOH HOH A . F 5 HOH 65 365 77 HOH HOH A . F 5 HOH 66 366 79 HOH HOH A . F 5 HOH 67 367 80 HOH HOH A . F 5 HOH 68 368 82 HOH HOH A . F 5 HOH 69 369 83 HOH HOH A . F 5 HOH 70 370 84 HOH HOH A . F 5 HOH 71 371 85 HOH HOH A . F 5 HOH 72 372 86 HOH HOH A . F 5 HOH 73 373 88 HOH HOH A . F 5 HOH 74 374 89 HOH HOH A . F 5 HOH 75 375 90 HOH HOH A . F 5 HOH 76 376 92 HOH HOH A . F 5 HOH 77 377 94 HOH HOH A . F 5 HOH 78 378 95 HOH HOH A . F 5 HOH 79 379 96 HOH HOH A . F 5 HOH 80 380 97 HOH HOH A . F 5 HOH 81 381 99 HOH HOH A . F 5 HOH 82 382 100 HOH HOH A . F 5 HOH 83 383 101 HOH HOH A . F 5 HOH 84 384 102 HOH HOH A . F 5 HOH 85 385 103 HOH HOH A . F 5 HOH 86 386 104 HOH HOH A . F 5 HOH 87 387 105 HOH HOH A . F 5 HOH 88 388 106 HOH HOH A . F 5 HOH 89 389 107 HOH HOH A . F 5 HOH 90 390 109 HOH HOH A . F 5 HOH 91 391 110 HOH HOH A . F 5 HOH 92 392 112 HOH HOH A . F 5 HOH 93 393 114 HOH HOH A . F 5 HOH 94 394 116 HOH HOH A . F 5 HOH 95 395 117 HOH HOH A . F 5 HOH 96 396 118 HOH HOH A . F 5 HOH 97 397 119 HOH HOH A . F 5 HOH 98 398 122 HOH HOH A . F 5 HOH 99 399 123 HOH HOH A . F 5 HOH 100 400 125 HOH HOH A . F 5 HOH 101 401 126 HOH HOH A . F 5 HOH 102 402 127 HOH HOH A . F 5 HOH 103 403 128 HOH HOH A . F 5 HOH 104 404 129 HOH HOH A . F 5 HOH 105 405 130 HOH HOH A . F 5 HOH 106 406 131 HOH HOH A . F 5 HOH 107 407 132 HOH HOH A . F 5 HOH 108 408 133 HOH HOH A . F 5 HOH 109 409 134 HOH HOH A . F 5 HOH 110 410 135 HOH HOH A . F 5 HOH 111 411 136 HOH HOH A . F 5 HOH 112 412 137 HOH HOH A . F 5 HOH 113 413 138 HOH HOH A . F 5 HOH 114 414 139 HOH HOH A . F 5 HOH 115 415 140 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16970 ? 1 MORE -174 ? 1 'SSA (A^2)' 23440 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 14_666 -y+5/4,-x+5/4,-z+5/4 0.0000000000 -1.0000000000 0.0000000000 120.0250000000 -1.0000000000 0.0000000000 0.0000000000 120.0250000000 0.0000000000 0.0000000000 -1.0000000000 120.0250000000 5 'crystal symmetry operation' 19_666 -x+5/4,-z+5/4,-y+5/4 -1.0000000000 0.0000000000 0.0000000000 120.0250000000 0.0000000000 0.0000000000 -1.0000000000 120.0250000000 0.0000000000 -1.0000000000 0.0000000000 120.0250000000 6 'crystal symmetry operation' 24_666 -z+5/4,-y+5/4,-x+5/4 0.0000000000 0.0000000000 -1.0000000000 120.0250000000 0.0000000000 -1.0000000000 0.0000000000 120.0250000000 -1.0000000000 0.0000000000 0.0000000000 120.0250000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 203 ? D NA . 2 1 A SO4 204 ? E SO4 . 3 1 A SO4 204 ? E SO4 . 4 1 A HOH 302 ? F HOH . 5 1 A HOH 311 ? F HOH . 6 1 A HOH 328 ? F HOH . 7 1 A HOH 343 ? F HOH . 8 1 A HOH 412 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-27 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 68.6596 55.7818 49.4496 0.0574 0.0854 0.0585 0.0069 0.0063 0.0016 4.4269 0.7888 1.4161 -1.5942 2.3137 -0.6738 -0.0228 -0.0117 0.0344 0.1979 0.0400 -0.0330 -0.0179 -0.0082 0.1439 'X-RAY DIFFRACTION' 2 ? refined 69.5247 46.7606 45.2067 0.0519 0.0554 0.0349 0.0257 0.0069 -0.0111 1.1871 0.8720 1.4734 -0.2859 -0.3591 0.2367 -0.0208 0.0472 -0.0263 0.0665 -0.0483 -0.0521 -0.0206 0.1356 0.0908 'X-RAY DIFFRACTION' 3 ? refined 74.4595 40.5597 52.8845 0.1332 0.1307 0.0434 0.1120 0.0247 0.0552 5.0352 0.8526 7.1880 0.1103 -2.3942 2.2123 -0.2670 0.0956 0.1714 -0.2424 -0.1394 0.0381 0.1264 0.5004 0.4816 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 26 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 27 A 90 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 91 A 108 ? . . . . ? # _pdbx_phasing_MR.entry_id 4JPD _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.950 _pdbx_phasing_MR.d_res_low_rotation 48.010 _pdbx_phasing_MR.d_res_high_translation 1.950 _pdbx_phasing_MR.d_res_low_translation 48.010 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.5.2 'Mon Oct 8 13:56:31 2012 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 403 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 403 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 13_545 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 0 ? OG ? A SER 4 OG 2 1 Y 1 A ASP 28 ? CG ? A ASP 32 CG 3 1 Y 1 A ASP 28 ? OD1 ? A ASP 32 OD1 4 1 Y 1 A ASP 28 ? OD2 ? A ASP 32 OD2 5 1 Y 1 A GLU 34 ? CG ? A GLU 38 CG 6 1 Y 1 A GLU 34 ? CD ? A GLU 38 CD 7 1 Y 1 A GLU 34 ? OE1 ? A GLU 38 OE1 8 1 Y 1 A GLU 34 ? OE2 ? A GLU 38 OE2 9 1 Y 1 A GLU 45 ? CG ? A GLU 49 CG 10 1 Y 1 A GLU 45 ? CD ? A GLU 49 CD 11 1 Y 1 A GLU 45 ? OE1 ? A GLU 49 OE1 12 1 Y 1 A GLU 45 ? OE2 ? A GLU 49 OE2 13 1 Y 1 A LYS 49 ? CG ? A LYS 53 CG 14 1 Y 1 A LYS 49 ? CD ? A LYS 53 CD 15 1 Y 1 A LYS 49 ? CE ? A LYS 53 CE 16 1 Y 1 A LYS 49 ? NZ ? A LYS 53 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 GLN N N N N 81 GLN CA C N S 82 GLN C C N N 83 GLN O O N N 84 GLN CB C N N 85 GLN CG C N N 86 GLN CD C N N 87 GLN OE1 O N N 88 GLN NE2 N N N 89 GLN OXT O N N 90 GLN H H N N 91 GLN H2 H N N 92 GLN HA H N N 93 GLN HB2 H N N 94 GLN HB3 H N N 95 GLN HG2 H N N 96 GLN HG3 H N N 97 GLN HE21 H N N 98 GLN HE22 H N N 99 GLN HXT H N N 100 GLU N N N N 101 GLU CA C N S 102 GLU C C N N 103 GLU O O N N 104 GLU CB C N N 105 GLU CG C N N 106 GLU CD C N N 107 GLU OE1 O N N 108 GLU OE2 O N N 109 GLU OXT O N N 110 GLU H H N N 111 GLU H2 H N N 112 GLU HA H N N 113 GLU HB2 H N N 114 GLU HB3 H N N 115 GLU HG2 H N N 116 GLU HG3 H N N 117 GLU HE2 H N N 118 GLU HXT H N N 119 GLY N N N N 120 GLY CA C N N 121 GLY C C N N 122 GLY O O N N 123 GLY OXT O N N 124 GLY H H N N 125 GLY H2 H N N 126 GLY HA2 H N N 127 GLY HA3 H N N 128 GLY HXT H N N 129 HIS N N N N 130 HIS CA C N S 131 HIS C C N N 132 HIS O O N N 133 HIS CB C N N 134 HIS CG C Y N 135 HIS ND1 N Y N 136 HIS CD2 C Y N 137 HIS CE1 C Y N 138 HIS NE2 N Y N 139 HIS OXT O N N 140 HIS H H N N 141 HIS H2 H N N 142 HIS HA H N N 143 HIS HB2 H N N 144 HIS HB3 H N N 145 HIS HD1 H N N 146 HIS HD2 H N N 147 HIS HE1 H N N 148 HIS HE2 H N N 149 HIS HXT H N N 150 HOH O O N N 151 HOH H1 H N N 152 HOH H2 H N N 153 ILE N N N N 154 ILE CA C N S 155 ILE C C N N 156 ILE O O N N 157 ILE CB C N S 158 ILE CG1 C N N 159 ILE CG2 C N N 160 ILE CD1 C N N 161 ILE OXT O N N 162 ILE H H N N 163 ILE H2 H N N 164 ILE HA H N N 165 ILE HB H N N 166 ILE HG12 H N N 167 ILE HG13 H N N 168 ILE HG21 H N N 169 ILE HG22 H N N 170 ILE HG23 H N N 171 ILE HD11 H N N 172 ILE HD12 H N N 173 ILE HD13 H N N 174 ILE HXT H N N 175 LEU N N N N 176 LEU CA C N S 177 LEU C C N N 178 LEU O O N N 179 LEU CB C N N 180 LEU CG C N N 181 LEU CD1 C N N 182 LEU CD2 C N N 183 LEU OXT O N N 184 LEU H H N N 185 LEU H2 H N N 186 LEU HA H N N 187 LEU HB2 H N N 188 LEU HB3 H N N 189 LEU HG H N N 190 LEU HD11 H N N 191 LEU HD12 H N N 192 LEU HD13 H N N 193 LEU HD21 H N N 194 LEU HD22 H N N 195 LEU HD23 H N N 196 LEU HXT H N N 197 LYS N N N N 198 LYS CA C N S 199 LYS C C N N 200 LYS O O N N 201 LYS CB C N N 202 LYS CG C N N 203 LYS CD C N N 204 LYS CE C N N 205 LYS NZ N N N 206 LYS OXT O N N 207 LYS H H N N 208 LYS H2 H N N 209 LYS HA H N N 210 LYS HB2 H N N 211 LYS HB3 H N N 212 LYS HG2 H N N 213 LYS HG3 H N N 214 LYS HD2 H N N 215 LYS HD3 H N N 216 LYS HE2 H N N 217 LYS HE3 H N N 218 LYS HZ1 H N N 219 LYS HZ2 H N N 220 LYS HZ3 H N N 221 LYS HXT H N N 222 MET N N N N 223 MET CA C N S 224 MET C C N N 225 MET O O N N 226 MET CB C N N 227 MET CG C N N 228 MET SD S N N 229 MET CE C N N 230 MET OXT O N N 231 MET H H N N 232 MET H2 H N N 233 MET HA H N N 234 MET HB2 H N N 235 MET HB3 H N N 236 MET HG2 H N N 237 MET HG3 H N N 238 MET HE1 H N N 239 MET HE2 H N N 240 MET HE3 H N N 241 MET HXT H N N 242 NA NA NA N N 243 PHE N N N N 244 PHE CA C N S 245 PHE C C N N 246 PHE O O N N 247 PHE CB C N N 248 PHE CG C Y N 249 PHE CD1 C Y N 250 PHE CD2 C Y N 251 PHE CE1 C Y N 252 PHE CE2 C Y N 253 PHE CZ C Y N 254 PHE OXT O N N 255 PHE H H N N 256 PHE H2 H N N 257 PHE HA H N N 258 PHE HB2 H N N 259 PHE HB3 H N N 260 PHE HD1 H N N 261 PHE HD2 H N N 262 PHE HE1 H N N 263 PHE HE2 H N N 264 PHE HZ H N N 265 PHE HXT H N N 266 PRO N N N N 267 PRO CA C N S 268 PRO C C N N 269 PRO O O N N 270 PRO CB C N N 271 PRO CG C N N 272 PRO CD C N N 273 PRO OXT O N N 274 PRO H H N N 275 PRO HA H N N 276 PRO HB2 H N N 277 PRO HB3 H N N 278 PRO HG2 H N N 279 PRO HG3 H N N 280 PRO HD2 H N N 281 PRO HD3 H N N 282 PRO HXT H N N 283 SER N N N N 284 SER CA C N S 285 SER C C N N 286 SER O O N N 287 SER CB C N N 288 SER OG O N N 289 SER OXT O N N 290 SER H H N N 291 SER H2 H N N 292 SER HA H N N 293 SER HB2 H N N 294 SER HB3 H N N 295 SER HG H N N 296 SER HXT H N N 297 SO4 S S N N 298 SO4 O1 O N N 299 SO4 O2 O N N 300 SO4 O3 O N N 301 SO4 O4 O N N 302 THR N N N N 303 THR CA C N S 304 THR C C N N 305 THR O O N N 306 THR CB C N R 307 THR OG1 O N N 308 THR CG2 C N N 309 THR OXT O N N 310 THR H H N N 311 THR H2 H N N 312 THR HA H N N 313 THR HB H N N 314 THR HG1 H N N 315 THR HG21 H N N 316 THR HG22 H N N 317 THR HG23 H N N 318 THR HXT H N N 319 TRP N N N N 320 TRP CA C N S 321 TRP C C N N 322 TRP O O N N 323 TRP CB C N N 324 TRP CG C Y N 325 TRP CD1 C Y N 326 TRP CD2 C Y N 327 TRP NE1 N Y N 328 TRP CE2 C Y N 329 TRP CE3 C Y N 330 TRP CZ2 C Y N 331 TRP CZ3 C Y N 332 TRP CH2 C Y N 333 TRP OXT O N N 334 TRP H H N N 335 TRP H2 H N N 336 TRP HA H N N 337 TRP HB2 H N N 338 TRP HB3 H N N 339 TRP HD1 H N N 340 TRP HE1 H N N 341 TRP HE3 H N N 342 TRP HZ2 H N N 343 TRP HZ3 H N N 344 TRP HH2 H N N 345 TRP HXT H N N 346 TYR N N N N 347 TYR CA C N S 348 TYR C C N N 349 TYR O O N N 350 TYR CB C N N 351 TYR CG C Y N 352 TYR CD1 C Y N 353 TYR CD2 C Y N 354 TYR CE1 C Y N 355 TYR CE2 C Y N 356 TYR CZ C Y N 357 TYR OH O N N 358 TYR OXT O N N 359 TYR H H N N 360 TYR H2 H N N 361 TYR HA H N N 362 TYR HB2 H N N 363 TYR HB3 H N N 364 TYR HD1 H N N 365 TYR HD2 H N N 366 TYR HE1 H N N 367 TYR HE2 H N N 368 TYR HH H N N 369 TYR HXT H N N 370 VAL N N N N 371 VAL CA C N S 372 VAL C C N N 373 VAL O O N N 374 VAL CB C N N 375 VAL CG1 C N N 376 VAL CG2 C N N 377 VAL OXT O N N 378 VAL H H N N 379 VAL H2 H N N 380 VAL HA H N N 381 VAL HB H N N 382 VAL HG11 H N N 383 VAL HG12 H N N 384 VAL HG13 H N N 385 VAL HG21 H N N 386 VAL HG22 H N N 387 VAL HG23 H N N 388 VAL HXT H N N 389 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 GLN N CA sing N N 76 GLN N H sing N N 77 GLN N H2 sing N N 78 GLN CA C sing N N 79 GLN CA CB sing N N 80 GLN CA HA sing N N 81 GLN C O doub N N 82 GLN C OXT sing N N 83 GLN CB CG sing N N 84 GLN CB HB2 sing N N 85 GLN CB HB3 sing N N 86 GLN CG CD sing N N 87 GLN CG HG2 sing N N 88 GLN CG HG3 sing N N 89 GLN CD OE1 doub N N 90 GLN CD NE2 sing N N 91 GLN NE2 HE21 sing N N 92 GLN NE2 HE22 sing N N 93 GLN OXT HXT sing N N 94 GLU N CA sing N N 95 GLU N H sing N N 96 GLU N H2 sing N N 97 GLU CA C sing N N 98 GLU CA CB sing N N 99 GLU CA HA sing N N 100 GLU C O doub N N 101 GLU C OXT sing N N 102 GLU CB CG sing N N 103 GLU CB HB2 sing N N 104 GLU CB HB3 sing N N 105 GLU CG CD sing N N 106 GLU CG HG2 sing N N 107 GLU CG HG3 sing N N 108 GLU CD OE1 doub N N 109 GLU CD OE2 sing N N 110 GLU OE2 HE2 sing N N 111 GLU OXT HXT sing N N 112 GLY N CA sing N N 113 GLY N H sing N N 114 GLY N H2 sing N N 115 GLY CA C sing N N 116 GLY CA HA2 sing N N 117 GLY CA HA3 sing N N 118 GLY C O doub N N 119 GLY C OXT sing N N 120 GLY OXT HXT sing N N 121 HIS N CA sing N N 122 HIS N H sing N N 123 HIS N H2 sing N N 124 HIS CA C sing N N 125 HIS CA CB sing N N 126 HIS CA HA sing N N 127 HIS C O doub N N 128 HIS C OXT sing N N 129 HIS CB CG sing N N 130 HIS CB HB2 sing N N 131 HIS CB HB3 sing N N 132 HIS CG ND1 sing Y N 133 HIS CG CD2 doub Y N 134 HIS ND1 CE1 doub Y N 135 HIS ND1 HD1 sing N N 136 HIS CD2 NE2 sing Y N 137 HIS CD2 HD2 sing N N 138 HIS CE1 NE2 sing Y N 139 HIS CE1 HE1 sing N N 140 HIS NE2 HE2 sing N N 141 HIS OXT HXT sing N N 142 HOH O H1 sing N N 143 HOH O H2 sing N N 144 ILE N CA sing N N 145 ILE N H sing N N 146 ILE N H2 sing N N 147 ILE CA C sing N N 148 ILE CA CB sing N N 149 ILE CA HA sing N N 150 ILE C O doub N N 151 ILE C OXT sing N N 152 ILE CB CG1 sing N N 153 ILE CB CG2 sing N N 154 ILE CB HB sing N N 155 ILE CG1 CD1 sing N N 156 ILE CG1 HG12 sing N N 157 ILE CG1 HG13 sing N N 158 ILE CG2 HG21 sing N N 159 ILE CG2 HG22 sing N N 160 ILE CG2 HG23 sing N N 161 ILE CD1 HD11 sing N N 162 ILE CD1 HD12 sing N N 163 ILE CD1 HD13 sing N N 164 ILE OXT HXT sing N N 165 LEU N CA sing N N 166 LEU N H sing N N 167 LEU N H2 sing N N 168 LEU CA C sing N N 169 LEU CA CB sing N N 170 LEU CA HA sing N N 171 LEU C O doub N N 172 LEU C OXT sing N N 173 LEU CB CG sing N N 174 LEU CB HB2 sing N N 175 LEU CB HB3 sing N N 176 LEU CG CD1 sing N N 177 LEU CG CD2 sing N N 178 LEU CG HG sing N N 179 LEU CD1 HD11 sing N N 180 LEU CD1 HD12 sing N N 181 LEU CD1 HD13 sing N N 182 LEU CD2 HD21 sing N N 183 LEU CD2 HD22 sing N N 184 LEU CD2 HD23 sing N N 185 LEU OXT HXT sing N N 186 LYS N CA sing N N 187 LYS N H sing N N 188 LYS N H2 sing N N 189 LYS CA C sing N N 190 LYS CA CB sing N N 191 LYS CA HA sing N N 192 LYS C O doub N N 193 LYS C OXT sing N N 194 LYS CB CG sing N N 195 LYS CB HB2 sing N N 196 LYS CB HB3 sing N N 197 LYS CG CD sing N N 198 LYS CG HG2 sing N N 199 LYS CG HG3 sing N N 200 LYS CD CE sing N N 201 LYS CD HD2 sing N N 202 LYS CD HD3 sing N N 203 LYS CE NZ sing N N 204 LYS CE HE2 sing N N 205 LYS CE HE3 sing N N 206 LYS NZ HZ1 sing N N 207 LYS NZ HZ2 sing N N 208 LYS NZ HZ3 sing N N 209 LYS OXT HXT sing N N 210 MET N CA sing N N 211 MET N H sing N N 212 MET N H2 sing N N 213 MET CA C sing N N 214 MET CA CB sing N N 215 MET CA HA sing N N 216 MET C O doub N N 217 MET C OXT sing N N 218 MET CB CG sing N N 219 MET CB HB2 sing N N 220 MET CB HB3 sing N N 221 MET CG SD sing N N 222 MET CG HG2 sing N N 223 MET CG HG3 sing N N 224 MET SD CE sing N N 225 MET CE HE1 sing N N 226 MET CE HE2 sing N N 227 MET CE HE3 sing N N 228 MET OXT HXT sing N N 229 PHE N CA sing N N 230 PHE N H sing N N 231 PHE N H2 sing N N 232 PHE CA C sing N N 233 PHE CA CB sing N N 234 PHE CA HA sing N N 235 PHE C O doub N N 236 PHE C OXT sing N N 237 PHE CB CG sing N N 238 PHE CB HB2 sing N N 239 PHE CB HB3 sing N N 240 PHE CG CD1 doub Y N 241 PHE CG CD2 sing Y N 242 PHE CD1 CE1 sing Y N 243 PHE CD1 HD1 sing N N 244 PHE CD2 CE2 doub Y N 245 PHE CD2 HD2 sing N N 246 PHE CE1 CZ doub Y N 247 PHE CE1 HE1 sing N N 248 PHE CE2 CZ sing Y N 249 PHE CE2 HE2 sing N N 250 PHE CZ HZ sing N N 251 PHE OXT HXT sing N N 252 PRO N CA sing N N 253 PRO N CD sing N N 254 PRO N H sing N N 255 PRO CA C sing N N 256 PRO CA CB sing N N 257 PRO CA HA sing N N 258 PRO C O doub N N 259 PRO C OXT sing N N 260 PRO CB CG sing N N 261 PRO CB HB2 sing N N 262 PRO CB HB3 sing N N 263 PRO CG CD sing N N 264 PRO CG HG2 sing N N 265 PRO CG HG3 sing N N 266 PRO CD HD2 sing N N 267 PRO CD HD3 sing N N 268 PRO OXT HXT sing N N 269 SER N CA sing N N 270 SER N H sing N N 271 SER N H2 sing N N 272 SER CA C sing N N 273 SER CA CB sing N N 274 SER CA HA sing N N 275 SER C O doub N N 276 SER C OXT sing N N 277 SER CB OG sing N N 278 SER CB HB2 sing N N 279 SER CB HB3 sing N N 280 SER OG HG sing N N 281 SER OXT HXT sing N N 282 SO4 S O1 doub N N 283 SO4 S O2 doub N N 284 SO4 S O3 sing N N 285 SO4 S O4 sing N N 286 THR N CA sing N N 287 THR N H sing N N 288 THR N H2 sing N N 289 THR CA C sing N N 290 THR CA CB sing N N 291 THR CA HA sing N N 292 THR C O doub N N 293 THR C OXT sing N N 294 THR CB OG1 sing N N 295 THR CB CG2 sing N N 296 THR CB HB sing N N 297 THR OG1 HG1 sing N N 298 THR CG2 HG21 sing N N 299 THR CG2 HG22 sing N N 300 THR CG2 HG23 sing N N 301 THR OXT HXT sing N N 302 TRP N CA sing N N 303 TRP N H sing N N 304 TRP N H2 sing N N 305 TRP CA C sing N N 306 TRP CA CB sing N N 307 TRP CA HA sing N N 308 TRP C O doub N N 309 TRP C OXT sing N N 310 TRP CB CG sing N N 311 TRP CB HB2 sing N N 312 TRP CB HB3 sing N N 313 TRP CG CD1 doub Y N 314 TRP CG CD2 sing Y N 315 TRP CD1 NE1 sing Y N 316 TRP CD1 HD1 sing N N 317 TRP CD2 CE2 doub Y N 318 TRP CD2 CE3 sing Y N 319 TRP NE1 CE2 sing Y N 320 TRP NE1 HE1 sing N N 321 TRP CE2 CZ2 sing Y N 322 TRP CE3 CZ3 doub Y N 323 TRP CE3 HE3 sing N N 324 TRP CZ2 CH2 doub Y N 325 TRP CZ2 HZ2 sing N N 326 TRP CZ3 CH2 sing Y N 327 TRP CZ3 HZ3 sing N N 328 TRP CH2 HH2 sing N N 329 TRP OXT HXT sing N N 330 TYR N CA sing N N 331 TYR N H sing N N 332 TYR N H2 sing N N 333 TYR CA C sing N N 334 TYR CA CB sing N N 335 TYR CA HA sing N N 336 TYR C O doub N N 337 TYR C OXT sing N N 338 TYR CB CG sing N N 339 TYR CB HB2 sing N N 340 TYR CB HB3 sing N N 341 TYR CG CD1 doub Y N 342 TYR CG CD2 sing Y N 343 TYR CD1 CE1 sing Y N 344 TYR CD1 HD1 sing N N 345 TYR CD2 CE2 doub Y N 346 TYR CD2 HD2 sing N N 347 TYR CE1 CZ doub Y N 348 TYR CE1 HE1 sing N N 349 TYR CE2 CZ sing Y N 350 TYR CE2 HE2 sing N N 351 TYR CZ OH sing N N 352 TYR OH HH sing N N 353 TYR OXT HXT sing N N 354 VAL N CA sing N N 355 VAL N H sing N N 356 VAL N H2 sing N N 357 VAL CA C sing N N 358 VAL CA CB sing N N 359 VAL CA HA sing N N 360 VAL C O doub N N 361 VAL C OXT sing N N 362 VAL CB CG1 sing N N 363 VAL CB CG2 sing N N 364 VAL CB HB sing N N 365 VAL CG1 HG11 sing N N 366 VAL CG1 HG12 sing N N 367 VAL CG1 HG13 sing N N 368 VAL CG2 HG21 sing N N 369 VAL CG2 HG22 sing N N 370 VAL CG2 HG23 sing N N 371 VAL OXT HXT sing N N 372 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 'SODIUM ION' NA 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EW4 _pdbx_initial_refinement_model.details 'PDB entry 1EW4' #