HEADER OXIDOREDUCTASE 21-MAR-13 4JR6 TITLE CRYSTAL STRUCTURE OF DSBA FROM MYCOBACTERIUM TUBERCULOSIS (REDUCED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE CONSERVED MEMBRANE OR SECRETED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 53-255; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2969C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS THIOL:DISULFIDE OXIDOREDUCTASE, THIOREDOXIN FOLD, OXIDOREDUCTASE, KEYWDS 2 DISULFIDE BOND FORMATION, MEMBRANE-ANCHORED EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG REVDAT 4 15-NOV-17 4JR6 1 REMARK REVDAT 3 11-JUN-14 4JR6 1 JRNL REVDAT 2 07-AUG-13 4JR6 1 REMARK REVDAT 1 17-JUL-13 4JR6 0 JRNL AUTH L.WANG,J.LI,X.WANG,W.LIU,X.C.ZHANG,X.LI,Z.RAO JRNL TITL STRUCTURE ANALYSIS OF THE EXTRACELLULAR DOMAIN REVEALS JRNL TITL 2 DISULFIDE BOND FORMING-PROTEIN PROPERTIES OF MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS RV2969C. JRNL REF PROTEIN CELL V. 4 628 2013 JRNL REFN ISSN 1674-800X JRNL PMID 23828196 JRNL DOI 10.1007/S13238-013-3033-X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 61490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.860 REMARK 3 FREE R VALUE TEST SET COUNT : 3603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1279 - 5.6269 0.98 2287 141 0.1810 0.2102 REMARK 3 2 5.6269 - 4.4697 1.00 2309 147 0.1411 0.1466 REMARK 3 3 4.4697 - 3.9057 0.99 2288 138 0.1385 0.1842 REMARK 3 4 3.9057 - 3.5491 1.00 2309 144 0.1429 0.1814 REMARK 3 5 3.5491 - 3.2949 1.00 2332 147 0.1561 0.2159 REMARK 3 6 3.2949 - 3.1008 1.00 2318 146 0.1666 0.2153 REMARK 3 7 3.1008 - 2.9456 0.98 2254 141 0.1766 0.1938 REMARK 3 8 2.9456 - 2.8175 0.98 2306 147 0.1783 0.2096 REMARK 3 9 2.8175 - 2.7091 0.98 2264 141 0.1828 0.2588 REMARK 3 10 2.7091 - 2.6156 0.97 2242 141 0.1786 0.2195 REMARK 3 11 2.6156 - 2.5339 0.97 2246 140 0.1774 0.2309 REMARK 3 12 2.5339 - 2.4614 0.96 2213 135 0.1656 0.2189 REMARK 3 13 2.4614 - 2.3967 0.96 2262 141 0.1671 0.2062 REMARK 3 14 2.3967 - 2.3382 0.96 2216 135 0.1719 0.2082 REMARK 3 15 2.3382 - 2.2851 0.95 2247 144 0.1612 0.1971 REMARK 3 16 2.2851 - 2.2365 0.97 2210 142 0.1657 0.2004 REMARK 3 17 2.2365 - 2.1917 0.95 2232 134 0.1607 0.2121 REMARK 3 18 2.1917 - 2.1504 0.95 2169 133 0.1606 0.2118 REMARK 3 19 2.1504 - 2.1120 0.96 2249 134 0.1700 0.2286 REMARK 3 20 2.1120 - 2.0762 0.96 2199 134 0.1763 0.2032 REMARK 3 21 2.0762 - 2.0427 0.94 2187 136 0.1776 0.2411 REMARK 3 22 2.0427 - 2.0113 0.94 2194 128 0.1808 0.2081 REMARK 3 23 2.0113 - 1.9817 0.93 2186 137 0.1922 0.2680 REMARK 3 24 1.9817 - 1.9538 0.91 2058 129 0.1933 0.2586 REMARK 3 25 1.9538 - 1.9274 0.88 2079 134 0.1983 0.2490 REMARK 3 26 1.9274 - 1.9024 0.88 2031 134 0.2249 0.2581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 39.05 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.96500 REMARK 3 B22 (A**2) : -3.14540 REMARK 3 B33 (A**2) : 6.11040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 3205 REMARK 3 ANGLE : 1.352 4219 REMARK 3 CHIRALITY : 0.111 487 REMARK 3 PLANARITY : 0.008 561 REMARK 3 DIHEDRAL : 11.620 1115 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 58:89) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6663 -13.4873 16.2322 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1311 REMARK 3 T33: 0.1603 T12: -0.0090 REMARK 3 T13: -0.0202 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.2758 L22: 0.0905 REMARK 3 L33: 0.3162 L12: 0.0416 REMARK 3 L13: -0.0233 L23: -0.1210 REMARK 3 S TENSOR REMARK 3 S11: -0.1672 S12: 0.0089 S13: 0.2338 REMARK 3 S21: 0.1448 S22: 0.0277 S23: -0.0540 REMARK 3 S31: -0.1490 S32: 0.0846 S33: -0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 90:144) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7977 -10.8904 12.3866 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1464 REMARK 3 T33: 0.1619 T12: -0.0063 REMARK 3 T13: -0.0084 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.2144 L22: -0.0563 REMARK 3 L33: -0.1089 L12: -0.2460 REMARK 3 L13: -0.1812 L23: -0.1747 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0673 S13: 0.0165 REMARK 3 S21: -0.0454 S22: 0.0371 S23: -0.0175 REMARK 3 S31: 0.0351 S32: -0.0262 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 145:172) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4738 -12.4935 12.3767 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1803 REMARK 3 T33: 0.1793 T12: 0.0051 REMARK 3 T13: 0.0097 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.2512 L22: 0.0880 REMARK 3 L33: 0.1415 L12: 0.0478 REMARK 3 L13: -0.2206 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.2207 S13: -0.1016 REMARK 3 S21: -0.0367 S22: 0.0740 S23: 0.1468 REMARK 3 S31: 0.0674 S32: -0.0452 S33: 0.0012 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 173:198) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8132 -8.1752 24.4916 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.3035 REMARK 3 T33: 0.1631 T12: 0.0132 REMARK 3 T13: 0.0363 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.0768 L22: 0.2438 REMARK 3 L33: 0.2342 L12: -0.5266 REMARK 3 L13: 0.3543 L23: -0.1913 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.5921 S13: -0.2317 REMARK 3 S21: 0.2654 S22: 0.1057 S23: 0.1805 REMARK 3 S31: -0.1823 S32: -0.2172 S33: 0.0757 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 199:209) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1629 2.4648 14.4697 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.1985 REMARK 3 T33: 0.2647 T12: -0.0262 REMARK 3 T13: -0.0157 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0280 L22: 0.0174 REMARK 3 L33: 0.0178 L12: -0.0241 REMARK 3 L13: 0.0237 L23: -0.0194 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: -0.0459 S13: 0.4130 REMARK 3 S21: 0.1177 S22: -0.0519 S23: 0.1000 REMARK 3 S31: -0.3203 S32: 0.1484 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 210:228) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0734 -9.4622 3.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.2073 REMARK 3 T33: 0.1808 T12: -0.0218 REMARK 3 T13: 0.0014 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 0.4643 L22: 0.1605 REMARK 3 L33: 0.0889 L12: -0.2186 REMARK 3 L13: 0.0134 L23: 0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.1739 S12: 0.1746 S13: 0.4508 REMARK 3 S21: -0.2073 S22: -0.1566 S23: -0.4770 REMARK 3 S31: -0.0553 S32: 0.0922 S33: 0.0018 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 229:255) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1616 -26.0353 7.3355 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.1680 REMARK 3 T33: 0.1533 T12: 0.0180 REMARK 3 T13: -0.0007 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 0.0413 L22: 0.0560 REMARK 3 L33: 0.0766 L12: 0.0923 REMARK 3 L13: -0.0056 L23: 0.0466 REMARK 3 S TENSOR REMARK 3 S11: 0.1178 S12: 0.2984 S13: -0.0808 REMARK 3 S21: -0.1791 S22: -0.1405 S23: 0.1747 REMARK 3 S31: 0.1499 S32: -0.0581 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 58:166) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6982 11.9195 -9.3061 REMARK 3 T TENSOR REMARK 3 T11: 0.1767 T22: 0.1518 REMARK 3 T33: 0.1528 T12: 0.0055 REMARK 3 T13: 0.0017 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.5243 L22: 0.1511 REMARK 3 L33: 0.3863 L12: 0.0094 REMARK 3 L13: -0.2324 L23: 0.2350 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.0379 S13: 0.0203 REMARK 3 S21: 0.0294 S22: -0.0116 S23: 0.0076 REMARK 3 S31: -0.1029 S32: -0.0094 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 167:254) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6986 10.9695 -9.7693 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.1566 REMARK 3 T33: 0.1586 T12: 0.0120 REMARK 3 T13: -0.0242 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.8456 L22: 0.5773 REMARK 3 L33: 0.6303 L12: 0.1157 REMARK 3 L13: -0.3828 L23: -0.1852 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.0999 S13: 0.0044 REMARK 3 S21: -0.0364 S22: -0.0270 S23: 0.0228 REMARK 3 S31: 0.0504 S32: -0.0328 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 4JR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97989 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63755 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 2000, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE TRIHYDRATE, PH 4.3, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.43750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.94650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.46750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.94650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.43750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.46750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 GLY A 44 REMARK 465 LEU A 45 REMARK 465 VAL A 46 REMARK 465 PRO A 47 REMARK 465 ARG A 48 REMARK 465 GLY A 49 REMARK 465 SER A 50 REMARK 465 HIS A 51 REMARK 465 MSE A 52 REMARK 465 GLY A 53 REMARK 465 VAL A 54 REMARK 465 ALA A 55 REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 MSE B 32 REMARK 465 GLY B 33 REMARK 465 SER B 34 REMARK 465 SER B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 HIS B 38 REMARK 465 HIS B 39 REMARK 465 HIS B 40 REMARK 465 HIS B 41 REMARK 465 SER B 42 REMARK 465 SER B 43 REMARK 465 GLY B 44 REMARK 465 LEU B 45 REMARK 465 VAL B 46 REMARK 465 PRO B 47 REMARK 465 ARG B 48 REMARK 465 GLY B 49 REMARK 465 SER B 50 REMARK 465 HIS B 51 REMARK 465 MSE B 52 REMARK 465 GLY B 53 REMARK 465 VAL B 54 REMARK 465 ALA B 55 REMARK 465 GLY B 56 REMARK 465 PRO B 57 REMARK 465 SER B 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 166 14.89 59.37 REMARK 500 VAL A 186 -79.88 -121.83 REMARK 500 SER A 227 -74.55 -125.08 REMARK 500 VAL B 186 -83.90 -122.12 REMARK 500 SER B 227 -73.90 -129.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JR4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN OXIDIZED FORM DBREF 4JR6 A 53 255 UNP O33272 O33272_MYCTU 53 255 DBREF 4JR6 B 53 255 UNP O33272 O33272_MYCTU 53 255 SEQADV 4JR6 MSE A 32 UNP O33272 EXPRESSION TAG SEQADV 4JR6 GLY A 33 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER A 34 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER A 35 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS A 36 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS A 37 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS A 38 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS A 39 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS A 40 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS A 41 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER A 42 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER A 43 UNP O33272 EXPRESSION TAG SEQADV 4JR6 GLY A 44 UNP O33272 EXPRESSION TAG SEQADV 4JR6 LEU A 45 UNP O33272 EXPRESSION TAG SEQADV 4JR6 VAL A 46 UNP O33272 EXPRESSION TAG SEQADV 4JR6 PRO A 47 UNP O33272 EXPRESSION TAG SEQADV 4JR6 ARG A 48 UNP O33272 EXPRESSION TAG SEQADV 4JR6 GLY A 49 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER A 50 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS A 51 UNP O33272 EXPRESSION TAG SEQADV 4JR6 MSE A 52 UNP O33272 EXPRESSION TAG SEQADV 4JR6 MSE A 156 UNP O33272 LEU 156 ENGINEERED MUTATION SEQADV 4JR6 MSE A 232 UNP O33272 LEU 232 ENGINEERED MUTATION SEQADV 4JR6 MSE B 32 UNP O33272 EXPRESSION TAG SEQADV 4JR6 GLY B 33 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER B 34 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER B 35 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS B 36 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS B 37 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS B 38 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS B 39 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS B 40 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS B 41 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER B 42 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER B 43 UNP O33272 EXPRESSION TAG SEQADV 4JR6 GLY B 44 UNP O33272 EXPRESSION TAG SEQADV 4JR6 LEU B 45 UNP O33272 EXPRESSION TAG SEQADV 4JR6 VAL B 46 UNP O33272 EXPRESSION TAG SEQADV 4JR6 PRO B 47 UNP O33272 EXPRESSION TAG SEQADV 4JR6 ARG B 48 UNP O33272 EXPRESSION TAG SEQADV 4JR6 GLY B 49 UNP O33272 EXPRESSION TAG SEQADV 4JR6 SER B 50 UNP O33272 EXPRESSION TAG SEQADV 4JR6 HIS B 51 UNP O33272 EXPRESSION TAG SEQADV 4JR6 MSE B 52 UNP O33272 EXPRESSION TAG SEQADV 4JR6 MSE B 156 UNP O33272 LEU 156 ENGINEERED MUTATION SEQADV 4JR6 MSE B 232 UNP O33272 LEU 232 ENGINEERED MUTATION SEQRES 1 A 224 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 224 LEU VAL PRO ARG GLY SER HIS MSE GLY VAL ALA GLY PRO SEQRES 3 A 224 GLY ASP ALA VAL ARG VAL THR SER SER LYS LEU VAL THR SEQRES 4 A 224 GLN PRO GLY THR SER ASN PRO LYS ALA VAL VAL SER PHE SEQRES 5 A 224 TYR GLU ASP PHE LEU CYS PRO ALA CYS GLY ILE PHE GLU SEQRES 6 A 224 ARG GLY PHE GLY PRO THR VAL SER LYS LEU VAL ASP ILE SEQRES 7 A 224 GLY ALA VAL ALA ALA ASP TYR THR MSE VAL ALA ILE LEU SEQRES 8 A 224 ASP SER ALA SER ASN GLN HIS TYR SER SER ARG ALA ALA SEQRES 9 A 224 ALA ALA ALA TYR CYS VAL ALA ASP GLU SER ILE GLU ALA SEQRES 10 A 224 PHE ARG ARG PHE HIS ALA ALA MSE PHE SER LYS ASP ILE SEQRES 11 A 224 GLN PRO ALA GLU LEU GLY LYS ASP PHE PRO ASP ASN ALA SEQRES 12 A 224 ARG LEU ILE GLU LEU ALA ARG GLU ALA GLY VAL VAL GLY SEQRES 13 A 224 LYS VAL PRO ASP CYS ILE ASN SER GLY LYS TYR ILE GLU SEQRES 14 A 224 LYS VAL ASP GLY LEU ALA ALA ALA VAL ASN VAL HIS ALA SEQRES 15 A 224 THR PRO THR VAL ARG VAL ASN GLY THR GLU TYR GLU TRP SEQRES 16 A 224 SER THR PRO ALA ALA MSE VAL ALA LYS ILE LYS GLU ILE SEQRES 17 A 224 VAL GLY ASP VAL PRO GLY ILE ASP SER ALA ALA ALA THR SEQRES 18 A 224 ALA THR SER SEQRES 1 B 224 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 224 LEU VAL PRO ARG GLY SER HIS MSE GLY VAL ALA GLY PRO SEQRES 3 B 224 GLY ASP ALA VAL ARG VAL THR SER SER LYS LEU VAL THR SEQRES 4 B 224 GLN PRO GLY THR SER ASN PRO LYS ALA VAL VAL SER PHE SEQRES 5 B 224 TYR GLU ASP PHE LEU CYS PRO ALA CYS GLY ILE PHE GLU SEQRES 6 B 224 ARG GLY PHE GLY PRO THR VAL SER LYS LEU VAL ASP ILE SEQRES 7 B 224 GLY ALA VAL ALA ALA ASP TYR THR MSE VAL ALA ILE LEU SEQRES 8 B 224 ASP SER ALA SER ASN GLN HIS TYR SER SER ARG ALA ALA SEQRES 9 B 224 ALA ALA ALA TYR CYS VAL ALA ASP GLU SER ILE GLU ALA SEQRES 10 B 224 PHE ARG ARG PHE HIS ALA ALA MSE PHE SER LYS ASP ILE SEQRES 11 B 224 GLN PRO ALA GLU LEU GLY LYS ASP PHE PRO ASP ASN ALA SEQRES 12 B 224 ARG LEU ILE GLU LEU ALA ARG GLU ALA GLY VAL VAL GLY SEQRES 13 B 224 LYS VAL PRO ASP CYS ILE ASN SER GLY LYS TYR ILE GLU SEQRES 14 B 224 LYS VAL ASP GLY LEU ALA ALA ALA VAL ASN VAL HIS ALA SEQRES 15 B 224 THR PRO THR VAL ARG VAL ASN GLY THR GLU TYR GLU TRP SEQRES 16 B 224 SER THR PRO ALA ALA MSE VAL ALA LYS ILE LYS GLU ILE SEQRES 17 B 224 VAL GLY ASP VAL PRO GLY ILE ASP SER ALA ALA ALA THR SEQRES 18 B 224 ALA THR SER MODRES 4JR6 MSE A 118 MET SELENOMETHIONINE MODRES 4JR6 MSE A 156 MET SELENOMETHIONINE MODRES 4JR6 MSE A 232 MET SELENOMETHIONINE MODRES 4JR6 MSE B 118 MET SELENOMETHIONINE MODRES 4JR6 MSE B 156 MET SELENOMETHIONINE MODRES 4JR6 MSE B 232 MET SELENOMETHIONINE HET MSE A 118 8 HET MSE A 156 8 HET MSE A 232 8 HET MSE B 118 13 HET MSE B 156 8 HET MSE B 232 8 HET SO4 A 301 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *452(H2 O) HELIX 1 1 CYS A 89 ILE A 109 1 21 HELIX 2 2 SER A 124 GLN A 128 5 5 HELIX 3 3 HIS A 129 SER A 145 1 17 HELIX 4 4 SER A 145 PHE A 157 1 13 HELIX 5 5 ASP A 172 ALA A 183 1 12 HELIX 6 6 LYS A 188 SER A 195 1 8 HELIX 7 7 TYR A 198 ASN A 210 1 13 HELIX 8 8 THR A 228 GLY A 241 1 14 HELIX 9 9 GLY A 245 THR A 254 1 10 HELIX 10 10 CYS B 89 ILE B 109 1 21 HELIX 11 11 SER B 124 GLN B 128 5 5 HELIX 12 12 HIS B 129 SER B 145 1 17 HELIX 13 13 SER B 145 PHE B 157 1 13 HELIX 14 14 ASP B 172 ALA B 183 1 12 HELIX 15 15 LYS B 188 GLY B 196 1 9 HELIX 16 16 TYR B 198 VAL B 209 1 12 HELIX 17 17 THR B 228 GLY B 241 1 14 HELIX 18 18 GLY B 245 ALA B 253 1 9 SHEET 1 A 5 VAL A 61 VAL A 63 0 SHEET 2 A 5 ALA A 113 MSE A 118 -1 O ALA A 114 N VAL A 63 SHEET 3 A 5 VAL A 80 GLU A 85 1 N PHE A 83 O ASP A 115 SHEET 4 A 5 THR A 216 VAL A 219 -1 O THR A 216 N TYR A 84 SHEET 5 A 5 THR A 222 GLU A 223 -1 O THR A 222 N VAL A 219 SHEET 1 B 5 VAL B 61 VAL B 63 0 SHEET 2 B 5 ALA B 113 MSE B 118 -1 O ALA B 114 N VAL B 63 SHEET 3 B 5 VAL B 80 GLU B 85 1 N PHE B 83 O ASP B 115 SHEET 4 B 5 THR B 216 VAL B 219 -1 O ARG B 218 N SER B 82 SHEET 5 B 5 THR B 222 GLU B 223 -1 O THR B 222 N VAL B 219 SSBOND 1 CYS A 140 CYS A 192 1555 1555 2.05 SSBOND 2 CYS B 140 CYS B 192 1555 1555 2.08 LINK C THR A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N VAL A 119 1555 1555 1.34 LINK C ALA A 155 N MSE A 156 1555 1555 1.34 LINK C MSE A 156 N PHE A 157 1555 1555 1.34 LINK C ALA A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N VAL A 233 1555 1555 1.33 LINK C THR B 117 N MSE B 118 1555 1555 1.32 LINK C MSE B 118 N VAL B 119 1555 1555 1.33 LINK C ALA B 155 N MSE B 156 1555 1555 1.33 LINK C MSE B 156 N PHE B 157 1555 1555 1.33 LINK C ALA B 231 N MSE B 232 1555 1555 1.33 LINK C MSE B 232 N VAL B 233 1555 1555 1.33 CISPEP 1 GLY A 58 ASP A 59 0 -0.15 CISPEP 2 THR A 214 PRO A 215 0 -4.74 CISPEP 3 THR B 214 PRO B 215 0 -5.80 SITE 1 AC1 9 ILE A 94 ARG A 97 LYS A 159 TYR A 224 SITE 2 AC1 9 LYS A 235 HOH A 419 HOH A 434 HOH A 449 SITE 3 AC1 9 HOH A 514 CRYST1 46.875 74.935 119.893 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021333 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008341 0.00000