data_4JRL # _entry.id 4JRL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JRL pdb_00004jrl 10.2210/pdb4jrl/pdb RCSB RCSB078415 ? ? WWPDB D_1000078415 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-416928 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4JRL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a putative glycoside hydrolase (BACOVA_00087) from Bacteroides ovatus ATCC 8483 at 2.10 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4JRL _cell.length_a 133.880 _cell.length_b 133.880 _cell.length_c 127.498 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JRL _symmetry.Int_Tables_number 155 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative glycoside hydrolase' 39842.527 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN ATOM OR ION' ? 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 6 water nat water 18.015 166 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQDEALNSEAAIDVCSGDDVQLANIDADSKVINVYVNKGADLSKQKLEFTLPQGATIKVNTPITGDTESTYDFSEEPHSR KFTVTSEDGQWQPVYTVNVILAELPTLFKFEELLTTSSEYDTFYEFTPATSQEISKVLQWSSGNPGFKLTG(MSE)ANSR IDYPTVQVANGFKGKAVKLETRNTGDFGA(MSE)VK(MSE)YIAAGNLFIGTFEVENALTNPRKATNFGFQFYKHPIALK GYYKFKAGEVYSVEGQPQTGKRDKCDIYAV(MSE)YEAENNSI(MSE)LNGDNVFNSDKLVLLARIEPEDIVESDEWNEF TIHFESVKGREIDDTKLQNGKYKLGIVLSSSVDGAYFRGAVGSTLYVDELELICKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GQDEALNSEAAIDVCSGDDVQLANIDADSKVINVYVNKGADLSKQKLEFTLPQGATIKVNTPITGDTESTYDFSEEPHSR KFTVTSEDGQWQPVYTVNVILAELPTLFKFEELLTTSSEYDTFYEFTPATSQEISKVLQWSSGNPGFKLTGMANSRIDYP TVQVANGFKGKAVKLETRNTGDFGAMVKMYIAAGNLFIGTFEVENALTNPRKATNFGFQFYKHPIALKGYYKFKAGEVYS VEGQPQTGKRDKCDIYAVMYEAENNSIMLNGDNVFNSDKLVLLARIEPEDIVESDEWNEFTIHFESVKGREIDDTKLQNG KYKLGIVLSSSVDGAYFRGAVGSTLYVDELELICKE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-416928 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 ASP n 1 4 GLU n 1 5 ALA n 1 6 LEU n 1 7 ASN n 1 8 SER n 1 9 GLU n 1 10 ALA n 1 11 ALA n 1 12 ILE n 1 13 ASP n 1 14 VAL n 1 15 CYS n 1 16 SER n 1 17 GLY n 1 18 ASP n 1 19 ASP n 1 20 VAL n 1 21 GLN n 1 22 LEU n 1 23 ALA n 1 24 ASN n 1 25 ILE n 1 26 ASP n 1 27 ALA n 1 28 ASP n 1 29 SER n 1 30 LYS n 1 31 VAL n 1 32 ILE n 1 33 ASN n 1 34 VAL n 1 35 TYR n 1 36 VAL n 1 37 ASN n 1 38 LYS n 1 39 GLY n 1 40 ALA n 1 41 ASP n 1 42 LEU n 1 43 SER n 1 44 LYS n 1 45 GLN n 1 46 LYS n 1 47 LEU n 1 48 GLU n 1 49 PHE n 1 50 THR n 1 51 LEU n 1 52 PRO n 1 53 GLN n 1 54 GLY n 1 55 ALA n 1 56 THR n 1 57 ILE n 1 58 LYS n 1 59 VAL n 1 60 ASN n 1 61 THR n 1 62 PRO n 1 63 ILE n 1 64 THR n 1 65 GLY n 1 66 ASP n 1 67 THR n 1 68 GLU n 1 69 SER n 1 70 THR n 1 71 TYR n 1 72 ASP n 1 73 PHE n 1 74 SER n 1 75 GLU n 1 76 GLU n 1 77 PRO n 1 78 HIS n 1 79 SER n 1 80 ARG n 1 81 LYS n 1 82 PHE n 1 83 THR n 1 84 VAL n 1 85 THR n 1 86 SER n 1 87 GLU n 1 88 ASP n 1 89 GLY n 1 90 GLN n 1 91 TRP n 1 92 GLN n 1 93 PRO n 1 94 VAL n 1 95 TYR n 1 96 THR n 1 97 VAL n 1 98 ASN n 1 99 VAL n 1 100 ILE n 1 101 LEU n 1 102 ALA n 1 103 GLU n 1 104 LEU n 1 105 PRO n 1 106 THR n 1 107 LEU n 1 108 PHE n 1 109 LYS n 1 110 PHE n 1 111 GLU n 1 112 GLU n 1 113 LEU n 1 114 LEU n 1 115 THR n 1 116 THR n 1 117 SER n 1 118 SER n 1 119 GLU n 1 120 TYR n 1 121 ASP n 1 122 THR n 1 123 PHE n 1 124 TYR n 1 125 GLU n 1 126 PHE n 1 127 THR n 1 128 PRO n 1 129 ALA n 1 130 THR n 1 131 SER n 1 132 GLN n 1 133 GLU n 1 134 ILE n 1 135 SER n 1 136 LYS n 1 137 VAL n 1 138 LEU n 1 139 GLN n 1 140 TRP n 1 141 SER n 1 142 SER n 1 143 GLY n 1 144 ASN n 1 145 PRO n 1 146 GLY n 1 147 PHE n 1 148 LYS n 1 149 LEU n 1 150 THR n 1 151 GLY n 1 152 MSE n 1 153 ALA n 1 154 ASN n 1 155 SER n 1 156 ARG n 1 157 ILE n 1 158 ASP n 1 159 TYR n 1 160 PRO n 1 161 THR n 1 162 VAL n 1 163 GLN n 1 164 VAL n 1 165 ALA n 1 166 ASN n 1 167 GLY n 1 168 PHE n 1 169 LYS n 1 170 GLY n 1 171 LYS n 1 172 ALA n 1 173 VAL n 1 174 LYS n 1 175 LEU n 1 176 GLU n 1 177 THR n 1 178 ARG n 1 179 ASN n 1 180 THR n 1 181 GLY n 1 182 ASP n 1 183 PHE n 1 184 GLY n 1 185 ALA n 1 186 MSE n 1 187 VAL n 1 188 LYS n 1 189 MSE n 1 190 TYR n 1 191 ILE n 1 192 ALA n 1 193 ALA n 1 194 GLY n 1 195 ASN n 1 196 LEU n 1 197 PHE n 1 198 ILE n 1 199 GLY n 1 200 THR n 1 201 PHE n 1 202 GLU n 1 203 VAL n 1 204 GLU n 1 205 ASN n 1 206 ALA n 1 207 LEU n 1 208 THR n 1 209 ASN n 1 210 PRO n 1 211 ARG n 1 212 LYS n 1 213 ALA n 1 214 THR n 1 215 ASN n 1 216 PHE n 1 217 GLY n 1 218 PHE n 1 219 GLN n 1 220 PHE n 1 221 TYR n 1 222 LYS n 1 223 HIS n 1 224 PRO n 1 225 ILE n 1 226 ALA n 1 227 LEU n 1 228 LYS n 1 229 GLY n 1 230 TYR n 1 231 TYR n 1 232 LYS n 1 233 PHE n 1 234 LYS n 1 235 ALA n 1 236 GLY n 1 237 GLU n 1 238 VAL n 1 239 TYR n 1 240 SER n 1 241 VAL n 1 242 GLU n 1 243 GLY n 1 244 GLN n 1 245 PRO n 1 246 GLN n 1 247 THR n 1 248 GLY n 1 249 LYS n 1 250 ARG n 1 251 ASP n 1 252 LYS n 1 253 CYS n 1 254 ASP n 1 255 ILE n 1 256 TYR n 1 257 ALA n 1 258 VAL n 1 259 MSE n 1 260 TYR n 1 261 GLU n 1 262 ALA n 1 263 GLU n 1 264 ASN n 1 265 ASN n 1 266 SER n 1 267 ILE n 1 268 MSE n 1 269 LEU n 1 270 ASN n 1 271 GLY n 1 272 ASP n 1 273 ASN n 1 274 VAL n 1 275 PHE n 1 276 ASN n 1 277 SER n 1 278 ASP n 1 279 LYS n 1 280 LEU n 1 281 VAL n 1 282 LEU n 1 283 LEU n 1 284 ALA n 1 285 ARG n 1 286 ILE n 1 287 GLU n 1 288 PRO n 1 289 GLU n 1 290 ASP n 1 291 ILE n 1 292 VAL n 1 293 GLU n 1 294 SER n 1 295 ASP n 1 296 GLU n 1 297 TRP n 1 298 ASN n 1 299 GLU n 1 300 PHE n 1 301 THR n 1 302 ILE n 1 303 HIS n 1 304 PHE n 1 305 GLU n 1 306 SER n 1 307 VAL n 1 308 LYS n 1 309 GLY n 1 310 ARG n 1 311 GLU n 1 312 ILE n 1 313 ASP n 1 314 ASP n 1 315 THR n 1 316 LYS n 1 317 LEU n 1 318 GLN n 1 319 ASN n 1 320 GLY n 1 321 LYS n 1 322 TYR n 1 323 LYS n 1 324 LEU n 1 325 GLY n 1 326 ILE n 1 327 VAL n 1 328 LEU n 1 329 SER n 1 330 SER n 1 331 SER n 1 332 VAL n 1 333 ASP n 1 334 GLY n 1 335 ALA n 1 336 TYR n 1 337 PHE n 1 338 ARG n 1 339 GLY n 1 340 ALA n 1 341 VAL n 1 342 GLY n 1 343 SER n 1 344 THR n 1 345 LEU n 1 346 TYR n 1 347 VAL n 1 348 ASP n 1 349 GLU n 1 350 LEU n 1 351 GLU n 1 352 LEU n 1 353 ILE n 1 354 CYS n 1 355 LYS n 1 356 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ZP_02063147.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8483' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides ovatus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411476 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7LQL7_BACOV _struct_ref.pdbx_db_accession A7LQL7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QDEALNSEAAIDVCSGDDVQLANIDADSKVINVYVNKGADLSKQKLEFTLPQGATIKVNTPITGDTESTYDFSEEPHSRK FTVTSEDGQWQPVYTVNVILAELPTLFKFEELLTTSSEYDTFYEFTPATSQEISKVLQWSSGNPGFKLTGMANSRIDYPT VQVANGFKGKAVKLETRNTGDFGAMVKMYIAAGNLFIGTFEVENALTNPRKATNFGFQFYKHPIALKGYYKFKAGEVYSV EGQPQTGKRDKCDIYAVMYEAENNSIMLNGDNVFNSDKLVLLARIEPEDIVESDEWNEFTIHFESVKGREIDDTKLQNGK YKLGIVLSSSVDGAYFRGAVGSTLYVDELELICKE ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JRL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 356 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A7LQL7 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 375 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 375 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4JRL _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A7LQL7 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4JRL # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pdbx_details '0.1M bicine pH 9, 2.4M ammonium sulfate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.pH 9 # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-01-24 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97932 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97932 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 2.10 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 10.210 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.106 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4JRL _reflns.B_iso_Wilson_estimate 33.623 _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all ? _reflns.d_resolution_low 28.711 _reflns.pdbx_redundancy ? _reflns.number_obs 25691 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.100 2.170 16286 ? 4605 0.862 1.6 ? ? ? ? ? 99.000 1 1 2.170 2.260 18322 ? 5171 0.700 2.0 ? ? ? ? ? 99.700 2 1 2.260 2.360 16849 ? 4826 0.614 2.3 ? ? ? ? ? 99.500 3 1 2.360 2.490 17367 ? 5175 0.496 2.8 ? ? ? ? ? 99.400 4 1 2.490 2.640 16228 ? 4766 0.323 4.0 ? ? ? ? ? 99.600 5 1 2.640 2.850 18434 ? 5161 0.241 5.6 ? ? ? ? ? 99.600 6 1 2.850 3.130 17070 ? 4843 0.141 9.2 ? ? ? ? ? 99.600 7 1 3.130 3.590 17182 ? 5032 0.073 16.1 ? ? ? ? ? 99.400 8 1 3.590 4.510 17508 ? 4913 0.042 26.8 ? ? ? ? ? 99.700 9 1 4.510 ? 17326 ? 5011 0.033 31.4 ? ? ? ? ? 99.100 10 1 # _refine.ls_percent_reflns_R_free 5.1000 _refine.overall_SU_B 8.2470 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4JRL _refine.aniso_B[2][3] -0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.1100 _refine.pdbx_ls_sigma_I ? _refine.aniso_B[1][3] -0.0000 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.aniso_B[3][3] -2.1000 _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] 0.6500 _refine.pdbx_overall_ESU_R 0.1760 _refine.ls_R_factor_obs 0.1731 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct MAD _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.ls_number_reflns_R_free 1307 _refine.correlation_coeff_Fo_to_Fc_free 0.9400 _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 99.7300 _refine.ls_R_factor_R_work 0.1707 _refine.overall_SU_R_free ? _refine.ls_d_res_high 2.1000 _refine.pdbx_overall_ESU_R_Free 0.1630 _refine.B_iso_min 20.510 _refine.occupancy_min 0.350 _refine.B_iso_mean 41.5498 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] 0.6500 _refine.B_iso_max 110.190 _refine.ls_d_res_low 28.711 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.aniso_B[1][2] 0.6500 _refine.ls_R_factor_R_free 0.2202 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 25691 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2 .A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. SODIUM (NA), CHLORIDE (CL), AND GLYCEROL (GOL) FROM THE CRYSTALLIZATION/CRYO CONDITIONS HAVE BEEN MODELED INTO THE STRUCTURE.4.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 5.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 6. AN UNKNOWN ION (UNX) HAS BEEN MODELED BASED ON A PEAK IN THE ANOMALOUS DIFFERENCE FOURIER MAP. THE ION LIKELY CO-PURIFIED WITH THE PROTEIN. X-RAY FLUORESCENCE EXCITATION SPECTRA WERE INCONCLUSIVE IN DETERMINING THE METAL IDENTITY WITH MINOR PEAKS FOR ZN, CU, FE AND CA. FOR THE PURPOSE OF REFINEMENT THE UNX ATOM TYPE X WAS ASSIGNED SCATTERING FACTORS EQUIVALENT TO CA WHICH GAVE A REASONABLE FIT TO THE OBSERVED DENSITY. 7. THE SCATTERING FACTORS FOR SULFUR, CHLORINE, SELENIUM AND THE UNKNOWN X ATOMS WERE ADJUSTED BY REFMAC 5.7.0032 TO ACCOUNT FOR ANOMALOUS DISPERSION BASED ON THE WAVELENGTH 0.91837 A (S F'= 0.16, CL F'= 0.19, SE F'= -1.94, X F'= 0.27). THE CROMER MANN VALUES LISTED IN THE CIF VERSION OF THE FILE INCLUDE THIS CORRECTION. ; _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2717 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 166 _refine_hist.number_atoms_total 2914 _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 28.711 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2818 0.011 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 2614 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3818 1.782 1.969 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 6042 0.803 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 353 3.099 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 132 31.971 25.606 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 458 10.337 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 10.660 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 427 0.106 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 3212 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 626 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1397 3.930 5.992 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 1396 3.924 5.991 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1746 5.070 11.198 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1000 _refine_ls_shell.d_res_low 2.1550 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.2600 _refine_ls_shell.number_reflns_R_work 1789 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2330 _refine_ls_shell.R_factor_R_free 0.2890 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1875 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4JRL _struct.title 'Crystal structure of a putative glycoside hydrolase (BACOVA_00087) from Bacteroides ovatus ATCC 8483 at 2.10 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Galactose-binding domain-like, PF13201 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HYDROLASE ; _struct_keywords.entry_id 4JRL # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 41 ? GLN A 45 ? ASP A 60 GLN A 64 5 ? 5 HELX_P HELX_P2 2 GLY A 143 ? LEU A 149 ? GLY A 162 LEU A 168 1 ? 7 HELX_P HELX_P3 3 SER A 155 ? TYR A 159 ? SER A 174 TYR A 178 5 ? 5 HELX_P HELX_P4 4 THR A 180 ? VAL A 187 ? THR A 199 VAL A 206 1 ? 8 HELX_P HELX_P5 5 VAL A 203 ? ALA A 206 ? VAL A 222 ALA A 225 5 ? 4 HELX_P HELX_P6 6 ASN A 209 ? ALA A 213 ? ASN A 228 ALA A 232 1 ? 5 HELX_P HELX_P7 7 GLU A 287 ? ILE A 291 ? GLU A 306 ILE A 310 5 ? 5 HELX_P HELX_P8 8 ASP A 313 ? ASN A 319 ? ASP A 332 ASN A 338 1 ? 7 HELX_P HELX_P9 9 ASP A 333 ? TYR A 336 ? ASP A 352 TYR A 355 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 151 C ? ? ? 1_555 A MSE 152 N ? ? A GLY 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 152 C ? ? ? 1_555 A ALA 153 N ? ? A MSE 171 A ALA 172 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A ALA 185 C ? ? ? 1_555 A MSE 186 N ? ? A ALA 204 A MSE 205 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A MSE 186 C ? ? ? 1_555 A VAL 187 N ? ? A MSE 205 A VAL 206 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A LYS 188 C ? ? ? 1_555 A MSE 189 N ? ? A LYS 207 A MSE 208 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A MSE 189 C ? ? ? 1_555 A TYR 190 N ? ? A MSE 208 A TYR 209 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale7 covale both ? A VAL 258 C ? ? ? 1_555 A MSE 259 N ? ? A VAL 277 A MSE 278 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale8 covale both ? A MSE 259 C ? ? ? 1_555 A TYR 260 N ? ? A MSE 278 A TYR 279 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A ILE 267 C ? ? ? 1_555 A MSE 268 N ? ? A ILE 286 A MSE 287 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? A MSE 268 C ? ? ? 1_555 A LEU 269 N ? ? A MSE 287 A LEU 288 1_555 ? ? ? ? ? ? ? 1.323 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 76 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 95 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 77 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 96 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.24 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 6 ? D ? 4 ? E ? 4 ? F ? 2 ? G ? 3 ? H ? 5 ? I ? 3 ? J ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel H 4 5 ? anti-parallel I 1 2 ? anti-parallel I 2 3 ? anti-parallel J 1 2 ? anti-parallel J 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 14 ? GLY A 17 ? VAL A 33 GLY A 36 A 2 LEU A 47 ? THR A 50 ? LEU A 66 THR A 69 B 1 VAL A 20 ? ASP A 26 ? VAL A 39 ASP A 45 B 2 VAL A 31 ? ASN A 37 ? VAL A 50 ASN A 56 B 3 VAL A 94 ? GLU A 103 ? VAL A 113 GLU A 122 B 4 SER A 79 ? THR A 85 ? SER A 98 THR A 104 B 5 THR A 56 ? VAL A 59 ? THR A 75 VAL A 78 C 1 VAL A 20 ? ASP A 26 ? VAL A 39 ASP A 45 C 2 VAL A 31 ? ASN A 37 ? VAL A 50 ASN A 56 C 3 VAL A 94 ? GLU A 103 ? VAL A 113 GLU A 122 C 4 SER A 135 ? GLN A 139 ? SER A 154 GLN A 158 C 5 PHE A 123 ? THR A 127 ? PHE A 142 THR A 146 C 6 GLU A 112 ? LEU A 113 ? GLU A 131 LEU A 132 D 1 LEU A 107 ? PHE A 108 ? LEU A 126 PHE A 127 D 2 THR A 344 ? CYS A 354 ? THR A 363 CYS A 373 D 3 ALA A 172 ? GLU A 176 ? ALA A 191 GLU A 195 D 4 THR A 161 ? VAL A 164 ? THR A 180 VAL A 183 E 1 LEU A 107 ? PHE A 108 ? LEU A 126 PHE A 127 E 2 THR A 344 ? CYS A 354 ? THR A 363 CYS A 373 E 3 PRO A 224 ? LYS A 234 ? PRO A 243 LYS A 253 E 4 ASN A 298 ? HIS A 303 ? ASN A 317 HIS A 322 F 1 ARG A 178 ? ASN A 179 ? ARG A 197 ASN A 198 F 2 ILE A 191 ? ALA A 192 ? ILE A 210 ALA A 211 G 1 ASN A 195 ? PHE A 197 ? ASN A 214 PHE A 216 G 2 TYR A 322 ? SER A 329 ? TYR A 341 SER A 348 G 3 PHE A 218 ? GLN A 219 ? PHE A 237 GLN A 238 H 1 ASN A 195 ? PHE A 197 ? ASN A 214 PHE A 216 H 2 TYR A 322 ? SER A 329 ? TYR A 341 SER A 348 H 3 ASP A 254 ? GLU A 261 ? ASP A 273 GLU A 280 H 4 LEU A 280 ? ARG A 285 ? LEU A 299 ARG A 304 H 5 GLU A 305 ? SER A 306 ? GLU A 324 SER A 325 I 1 GLY A 199 ? PHE A 201 ? GLY A 218 PHE A 220 I 2 THR A 214 ? PHE A 216 ? THR A 233 PHE A 235 I 3 LEU A 269 ? ASN A 270 ? LEU A 288 ASN A 289 J 1 GLN A 244 ? GLN A 246 ? GLN A 263 GLN A 265 J 2 TYR A 239 ? VAL A 241 ? TYR A 258 VAL A 260 J 3 ARG A 338 ? ALA A 340 ? ARG A 357 ALA A 359 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 16 ? N SER A 35 O GLU A 48 ? O GLU A 67 B 1 2 N LEU A 22 ? N LEU A 41 O TYR A 35 ? O TYR A 54 B 2 3 N VAL A 34 ? N VAL A 53 O ASN A 98 ? O ASN A 117 B 3 4 O TYR A 95 ? O TYR A 114 N PHE A 82 ? N PHE A 101 B 4 5 O THR A 85 ? O THR A 104 N THR A 56 ? N THR A 75 C 1 2 N LEU A 22 ? N LEU A 41 O TYR A 35 ? O TYR A 54 C 2 3 N VAL A 34 ? N VAL A 53 O ASN A 98 ? O ASN A 117 C 3 4 N GLU A 103 ? N GLU A 122 O SER A 135 ? O SER A 154 C 4 5 O LEU A 138 ? O LEU A 157 N GLU A 125 ? N GLU A 144 C 5 6 O TYR A 124 ? O TYR A 143 N GLU A 112 ? N GLU A 131 D 1 2 N PHE A 108 ? N PHE A 127 O LEU A 350 ? O LEU A 369 D 2 3 O LEU A 345 ? O LEU A 364 N LEU A 175 ? N LEU A 194 D 3 4 O LYS A 174 ? O LYS A 193 N VAL A 162 ? N VAL A 181 E 1 2 N PHE A 108 ? N PHE A 127 O LEU A 350 ? O LEU A 369 E 2 3 O ILE A 353 ? O ILE A 372 N ALA A 226 ? N ALA A 245 E 3 4 N LEU A 227 ? N LEU A 246 O ILE A 302 ? O ILE A 321 F 1 2 N ARG A 178 ? N ARG A 197 O ALA A 192 ? O ALA A 211 G 1 2 N LEU A 196 ? N LEU A 215 O LEU A 328 ? O LEU A 347 G 2 3 O LEU A 324 ? O LEU A 343 N PHE A 218 ? N PHE A 237 H 1 2 N LEU A 196 ? N LEU A 215 O LEU A 328 ? O LEU A 347 H 2 3 O VAL A 327 ? O VAL A 346 N TYR A 256 ? N TYR A 275 H 3 4 N MSE A 259 ? N MSE A 278 O VAL A 281 ? O VAL A 300 H 4 5 N LEU A 283 ? N LEU A 302 O GLU A 305 ? O GLU A 324 I 1 2 N THR A 200 ? N THR A 219 O ASN A 215 ? O ASN A 234 I 2 3 N PHE A 216 ? N PHE A 235 O LEU A 269 ? O LEU A 288 J 1 2 O GLN A 246 ? O GLN A 265 N TYR A 239 ? N TYR A 258 J 2 3 N SER A 240 ? N SER A 259 O GLY A 339 ? O GLY A 358 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 402 ? 1 'BINDING SITE FOR RESIDUE CL A 402' AC2 Software A SO4 403 ? 6 'BINDING SITE FOR RESIDUE SO4 A 403' AC3 Software A GOL 404 ? 2 'BINDING SITE FOR RESIDUE GOL A 404' AC4 Software A GOL 405 ? 6 'BINDING SITE FOR RESIDUE GOL A 405' AC5 Software A GOL 406 ? 4 'BINDING SITE FOR RESIDUE GOL A 406' AC6 Software A GOL 407 ? 10 'BINDING SITE FOR RESIDUE GOL A 407' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 THR A 115 ? THR A 134 . ? 1_555 ? 2 AC2 6 HIS A 303 ? HIS A 322 . ? 1_555 ? 3 AC2 6 HIS A 303 ? HIS A 322 . ? 10_455 ? 4 AC2 6 PHE A 304 ? PHE A 323 . ? 1_555 ? 5 AC2 6 PHE A 304 ? PHE A 323 . ? 10_455 ? 6 AC2 6 SER A 306 ? SER A 325 . ? 10_455 ? 7 AC2 6 SER A 306 ? SER A 325 . ? 1_555 ? 8 AC3 2 THR A 247 ? THR A 266 . ? 6_555 ? 9 AC3 2 LYS A 308 ? LYS A 327 . ? 1_555 ? 10 AC4 6 ASN A 195 ? ASN A 214 . ? 1_555 ? 11 AC4 6 TYR A 256 ? TYR A 275 . ? 1_555 ? 12 AC4 6 ALA A 335 ? ALA A 354 . ? 1_555 ? 13 AC4 6 HOH I . ? HOH A 533 . ? 1_555 ? 14 AC4 6 HOH I . ? HOH A 561 . ? 1_555 ? 15 AC4 6 HOH I . ? HOH A 611 . ? 1_555 ? 16 AC5 4 ASN A 273 ? ASN A 292 . ? 1_555 ? 17 AC5 4 SER A 277 ? SER A 296 . ? 1_555 ? 18 AC5 4 ASP A 278 ? ASP A 297 . ? 1_555 ? 19 AC5 4 LYS A 279 ? LYS A 298 . ? 1_555 ? 20 AC6 10 ASP A 19 ? ASP A 38 . ? 1_555 ? 21 AC6 10 ASN A 37 ? ASN A 56 . ? 1_555 ? 22 AC6 10 LYS A 38 ? LYS A 57 . ? 1_555 ? 23 AC6 10 ALA A 40 ? ALA A 59 . ? 1_555 ? 24 AC6 10 PHE A 218 ? PHE A 237 . ? 1_555 ? 25 AC6 10 GLN A 219 ? GLN A 238 . ? 1_555 ? 26 AC6 10 ASN A 265 ? ASN A 284 . ? 1_555 ? 27 AC6 10 LYS A 323 ? LYS A 342 . ? 1_555 ? 28 AC6 10 HOH I . ? HOH A 505 . ? 1_555 ? 29 AC6 10 HOH I . ? HOH A 525 . ? 1_555 ? # _atom_sites.entry_id 4JRL _atom_sites.fract_transf_matrix[1][1] 0.007469 _atom_sites.fract_transf_matrix[1][2] 0.004312 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008625 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007843 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag C 2.3100 20.8439 1.0200 10.2075 1.5886 0.5687 0.8650 51.6512 0.2156 ? ? CL 11.4604 0.0104 7.1964 1.1662 6.2556 18.5194 1.6455 47.7784 -9.3641 0.1933 0.2636 H 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 ? ? N 12.2126 0.0057 3.1322 9.8933 2.0125 28.9975 1.1663 0.5826 -11.5290 ? ? O 3.0485 13.2771 2.2868 5.7011 1.5463 0.3239 0.8670 32.9089 0.2508 ? ? S 6.9053 1.4679 5.2034 22.2151 1.4379 0.2536 1.5863 56.1720 1.0317 0.1648 0.2063 SE 17.0006 2.4098 5.8196 0.2726 3.9731 15.2372 4.3543 43.8163 0.9006 -1.9403 3.3908 X 8.6266 10.4421 7.3873 0.6599 1.5899 85.7484 1.0211 178.4370 1.6491 0.2740 0.5008 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 21 ? ? ? A . n A 1 3 ASP 3 22 ? ? ? A . n A 1 4 GLU 4 23 ? ? ? A . n A 1 5 ALA 5 24 ? ? ? A . n A 1 6 LEU 6 25 ? ? ? A . n A 1 7 ASN 7 26 ? ? ? A . n A 1 8 SER 8 27 ? ? ? A . n A 1 9 GLU 9 28 28 GLU GLU A . n A 1 10 ALA 10 29 29 ALA ALA A . n A 1 11 ALA 11 30 30 ALA ALA A . n A 1 12 ILE 12 31 31 ILE ILE A . n A 1 13 ASP 13 32 32 ASP ASP A . n A 1 14 VAL 14 33 33 VAL VAL A . n A 1 15 CYS 15 34 34 CYS CYS A . n A 1 16 SER 16 35 35 SER SER A . n A 1 17 GLY 17 36 36 GLY GLY A . n A 1 18 ASP 18 37 37 ASP ASP A . n A 1 19 ASP 19 38 38 ASP ASP A . n A 1 20 VAL 20 39 39 VAL VAL A . n A 1 21 GLN 21 40 40 GLN GLN A . n A 1 22 LEU 22 41 41 LEU LEU A . n A 1 23 ALA 23 42 42 ALA ALA A . n A 1 24 ASN 24 43 43 ASN ASN A . n A 1 25 ILE 25 44 44 ILE ILE A . n A 1 26 ASP 26 45 45 ASP ASP A . n A 1 27 ALA 27 46 46 ALA ALA A . n A 1 28 ASP 28 47 47 ASP ASP A . n A 1 29 SER 29 48 48 SER SER A . n A 1 30 LYS 30 49 49 LYS LYS A . n A 1 31 VAL 31 50 50 VAL VAL A . n A 1 32 ILE 32 51 51 ILE ILE A . n A 1 33 ASN 33 52 52 ASN ASN A . n A 1 34 VAL 34 53 53 VAL VAL A . n A 1 35 TYR 35 54 54 TYR TYR A . n A 1 36 VAL 36 55 55 VAL VAL A . n A 1 37 ASN 37 56 56 ASN ASN A . n A 1 38 LYS 38 57 57 LYS LYS A . n A 1 39 GLY 39 58 58 GLY GLY A . n A 1 40 ALA 40 59 59 ALA ALA A . n A 1 41 ASP 41 60 60 ASP ASP A . n A 1 42 LEU 42 61 61 LEU LEU A . n A 1 43 SER 43 62 62 SER SER A . n A 1 44 LYS 44 63 63 LYS LYS A . n A 1 45 GLN 45 64 64 GLN GLN A . n A 1 46 LYS 46 65 65 LYS LYS A . n A 1 47 LEU 47 66 66 LEU LEU A . n A 1 48 GLU 48 67 67 GLU GLU A . n A 1 49 PHE 49 68 68 PHE PHE A . n A 1 50 THR 50 69 69 THR THR A . n A 1 51 LEU 51 70 70 LEU LEU A . n A 1 52 PRO 52 71 71 PRO PRO A . n A 1 53 GLN 53 72 72 GLN GLN A . n A 1 54 GLY 54 73 73 GLY GLY A . n A 1 55 ALA 55 74 74 ALA ALA A . n A 1 56 THR 56 75 75 THR THR A . n A 1 57 ILE 57 76 76 ILE ILE A . n A 1 58 LYS 58 77 77 LYS LYS A . n A 1 59 VAL 59 78 78 VAL VAL A . n A 1 60 ASN 60 79 79 ASN ASN A . n A 1 61 THR 61 80 80 THR THR A . n A 1 62 PRO 62 81 81 PRO PRO A . n A 1 63 ILE 63 82 82 ILE ILE A . n A 1 64 THR 64 83 83 THR THR A . n A 1 65 GLY 65 84 84 GLY GLY A . n A 1 66 ASP 66 85 85 ASP ASP A . n A 1 67 THR 67 86 86 THR THR A . n A 1 68 GLU 68 87 87 GLU GLU A . n A 1 69 SER 69 88 88 SER SER A . n A 1 70 THR 70 89 89 THR THR A . n A 1 71 TYR 71 90 90 TYR TYR A . n A 1 72 ASP 72 91 91 ASP ASP A . n A 1 73 PHE 73 92 92 PHE PHE A . n A 1 74 SER 74 93 93 SER SER A . n A 1 75 GLU 75 94 94 GLU GLU A . n A 1 76 GLU 76 95 95 GLU GLU A . n A 1 77 PRO 77 96 96 PRO PRO A . n A 1 78 HIS 78 97 97 HIS HIS A . n A 1 79 SER 79 98 98 SER SER A . n A 1 80 ARG 80 99 99 ARG ARG A . n A 1 81 LYS 81 100 100 LYS LYS A . n A 1 82 PHE 82 101 101 PHE PHE A . n A 1 83 THR 83 102 102 THR THR A . n A 1 84 VAL 84 103 103 VAL VAL A . n A 1 85 THR 85 104 104 THR THR A . n A 1 86 SER 86 105 105 SER SER A . n A 1 87 GLU 87 106 106 GLU GLU A . n A 1 88 ASP 88 107 107 ASP ASP A . n A 1 89 GLY 89 108 108 GLY GLY A . n A 1 90 GLN 90 109 109 GLN GLN A . n A 1 91 TRP 91 110 110 TRP TRP A . n A 1 92 GLN 92 111 111 GLN GLN A . n A 1 93 PRO 93 112 112 PRO PRO A . n A 1 94 VAL 94 113 113 VAL VAL A . n A 1 95 TYR 95 114 114 TYR TYR A . n A 1 96 THR 96 115 115 THR THR A . n A 1 97 VAL 97 116 116 VAL VAL A . n A 1 98 ASN 98 117 117 ASN ASN A . n A 1 99 VAL 99 118 118 VAL VAL A . n A 1 100 ILE 100 119 119 ILE ILE A . n A 1 101 LEU 101 120 120 LEU LEU A . n A 1 102 ALA 102 121 121 ALA ALA A . n A 1 103 GLU 103 122 122 GLU GLU A . n A 1 104 LEU 104 123 123 LEU LEU A . n A 1 105 PRO 105 124 124 PRO PRO A . n A 1 106 THR 106 125 125 THR THR A . n A 1 107 LEU 107 126 126 LEU LEU A . n A 1 108 PHE 108 127 127 PHE PHE A . n A 1 109 LYS 109 128 128 LYS LYS A . n A 1 110 PHE 110 129 129 PHE PHE A . n A 1 111 GLU 111 130 130 GLU GLU A . n A 1 112 GLU 112 131 131 GLU GLU A . n A 1 113 LEU 113 132 132 LEU LEU A . n A 1 114 LEU 114 133 133 LEU LEU A . n A 1 115 THR 115 134 134 THR THR A . n A 1 116 THR 116 135 135 THR THR A . n A 1 117 SER 117 136 136 SER SER A . n A 1 118 SER 118 137 137 SER SER A . n A 1 119 GLU 119 138 138 GLU GLU A . n A 1 120 TYR 120 139 139 TYR TYR A . n A 1 121 ASP 121 140 140 ASP ASP A . n A 1 122 THR 122 141 141 THR THR A . n A 1 123 PHE 123 142 142 PHE PHE A . n A 1 124 TYR 124 143 143 TYR TYR A . n A 1 125 GLU 125 144 144 GLU GLU A . n A 1 126 PHE 126 145 145 PHE PHE A . n A 1 127 THR 127 146 146 THR THR A . n A 1 128 PRO 128 147 147 PRO PRO A . n A 1 129 ALA 129 148 148 ALA ALA A . n A 1 130 THR 130 149 149 THR THR A . n A 1 131 SER 131 150 150 SER SER A . n A 1 132 GLN 132 151 151 GLN GLN A . n A 1 133 GLU 133 152 152 GLU GLU A . n A 1 134 ILE 134 153 153 ILE ILE A . n A 1 135 SER 135 154 154 SER SER A . n A 1 136 LYS 136 155 155 LYS LYS A . n A 1 137 VAL 137 156 156 VAL VAL A . n A 1 138 LEU 138 157 157 LEU LEU A . n A 1 139 GLN 139 158 158 GLN GLN A . n A 1 140 TRP 140 159 159 TRP TRP A . n A 1 141 SER 141 160 160 SER SER A . n A 1 142 SER 142 161 161 SER SER A . n A 1 143 GLY 143 162 162 GLY GLY A . n A 1 144 ASN 144 163 163 ASN ASN A . n A 1 145 PRO 145 164 164 PRO PRO A . n A 1 146 GLY 146 165 165 GLY GLY A . n A 1 147 PHE 147 166 166 PHE PHE A . n A 1 148 LYS 148 167 167 LYS LYS A . n A 1 149 LEU 149 168 168 LEU LEU A . n A 1 150 THR 150 169 169 THR THR A . n A 1 151 GLY 151 170 170 GLY GLY A . n A 1 152 MSE 152 171 171 MSE MSE A . n A 1 153 ALA 153 172 172 ALA ALA A . n A 1 154 ASN 154 173 173 ASN ASN A . n A 1 155 SER 155 174 174 SER SER A . n A 1 156 ARG 156 175 175 ARG ARG A . n A 1 157 ILE 157 176 176 ILE ILE A . n A 1 158 ASP 158 177 177 ASP ASP A . n A 1 159 TYR 159 178 178 TYR TYR A . n A 1 160 PRO 160 179 179 PRO PRO A . n A 1 161 THR 161 180 180 THR THR A . n A 1 162 VAL 162 181 181 VAL VAL A . n A 1 163 GLN 163 182 182 GLN GLN A . n A 1 164 VAL 164 183 183 VAL VAL A . n A 1 165 ALA 165 184 184 ALA ALA A . n A 1 166 ASN 166 185 185 ASN ASN A . n A 1 167 GLY 167 186 186 GLY GLY A . n A 1 168 PHE 168 187 187 PHE PHE A . n A 1 169 LYS 169 188 188 LYS LYS A . n A 1 170 GLY 170 189 189 GLY GLY A . n A 1 171 LYS 171 190 190 LYS LYS A . n A 1 172 ALA 172 191 191 ALA ALA A . n A 1 173 VAL 173 192 192 VAL VAL A . n A 1 174 LYS 174 193 193 LYS LYS A . n A 1 175 LEU 175 194 194 LEU LEU A . n A 1 176 GLU 176 195 195 GLU GLU A . n A 1 177 THR 177 196 196 THR THR A . n A 1 178 ARG 178 197 197 ARG ARG A . n A 1 179 ASN 179 198 198 ASN ASN A . n A 1 180 THR 180 199 199 THR THR A . n A 1 181 GLY 181 200 200 GLY GLY A . n A 1 182 ASP 182 201 201 ASP ASP A . n A 1 183 PHE 183 202 202 PHE PHE A . n A 1 184 GLY 184 203 203 GLY GLY A . n A 1 185 ALA 185 204 204 ALA ALA A . n A 1 186 MSE 186 205 205 MSE MSE A . n A 1 187 VAL 187 206 206 VAL VAL A . n A 1 188 LYS 188 207 207 LYS LYS A . n A 1 189 MSE 189 208 208 MSE MSE A . n A 1 190 TYR 190 209 209 TYR TYR A . n A 1 191 ILE 191 210 210 ILE ILE A . n A 1 192 ALA 192 211 211 ALA ALA A . n A 1 193 ALA 193 212 212 ALA ALA A . n A 1 194 GLY 194 213 213 GLY GLY A . n A 1 195 ASN 195 214 214 ASN ASN A . n A 1 196 LEU 196 215 215 LEU LEU A . n A 1 197 PHE 197 216 216 PHE PHE A . n A 1 198 ILE 198 217 217 ILE ILE A . n A 1 199 GLY 199 218 218 GLY GLY A . n A 1 200 THR 200 219 219 THR THR A . n A 1 201 PHE 201 220 220 PHE PHE A . n A 1 202 GLU 202 221 221 GLU GLU A . n A 1 203 VAL 203 222 222 VAL VAL A . n A 1 204 GLU 204 223 223 GLU GLU A . n A 1 205 ASN 205 224 224 ASN ASN A . n A 1 206 ALA 206 225 225 ALA ALA A . n A 1 207 LEU 207 226 226 LEU LEU A . n A 1 208 THR 208 227 227 THR THR A . n A 1 209 ASN 209 228 228 ASN ASN A . n A 1 210 PRO 210 229 229 PRO PRO A . n A 1 211 ARG 211 230 230 ARG ARG A . n A 1 212 LYS 212 231 231 LYS LYS A . n A 1 213 ALA 213 232 232 ALA ALA A . n A 1 214 THR 214 233 233 THR THR A . n A 1 215 ASN 215 234 234 ASN ASN A . n A 1 216 PHE 216 235 235 PHE PHE A . n A 1 217 GLY 217 236 236 GLY GLY A . n A 1 218 PHE 218 237 237 PHE PHE A . n A 1 219 GLN 219 238 238 GLN GLN A . n A 1 220 PHE 220 239 239 PHE PHE A . n A 1 221 TYR 221 240 240 TYR TYR A . n A 1 222 LYS 222 241 241 LYS LYS A . n A 1 223 HIS 223 242 242 HIS HIS A . n A 1 224 PRO 224 243 243 PRO PRO A . n A 1 225 ILE 225 244 244 ILE ILE A . n A 1 226 ALA 226 245 245 ALA ALA A . n A 1 227 LEU 227 246 246 LEU LEU A . n A 1 228 LYS 228 247 247 LYS LYS A . n A 1 229 GLY 229 248 248 GLY GLY A . n A 1 230 TYR 230 249 249 TYR TYR A . n A 1 231 TYR 231 250 250 TYR TYR A . n A 1 232 LYS 232 251 251 LYS LYS A . n A 1 233 PHE 233 252 252 PHE PHE A . n A 1 234 LYS 234 253 253 LYS LYS A . n A 1 235 ALA 235 254 254 ALA ALA A . n A 1 236 GLY 236 255 255 GLY GLY A . n A 1 237 GLU 237 256 256 GLU GLU A . n A 1 238 VAL 238 257 257 VAL VAL A . n A 1 239 TYR 239 258 258 TYR TYR A . n A 1 240 SER 240 259 259 SER SER A . n A 1 241 VAL 241 260 260 VAL VAL A . n A 1 242 GLU 242 261 261 GLU GLU A . n A 1 243 GLY 243 262 262 GLY GLY A . n A 1 244 GLN 244 263 263 GLN GLN A . n A 1 245 PRO 245 264 264 PRO PRO A . n A 1 246 GLN 246 265 265 GLN GLN A . n A 1 247 THR 247 266 266 THR THR A . n A 1 248 GLY 248 267 267 GLY GLY A . n A 1 249 LYS 249 268 268 LYS LYS A . n A 1 250 ARG 250 269 269 ARG ARG A . n A 1 251 ASP 251 270 270 ASP ASP A . n A 1 252 LYS 252 271 271 LYS LYS A . n A 1 253 CYS 253 272 272 CYS CYS A . n A 1 254 ASP 254 273 273 ASP ASP A . n A 1 255 ILE 255 274 274 ILE ILE A . n A 1 256 TYR 256 275 275 TYR TYR A . n A 1 257 ALA 257 276 276 ALA ALA A . n A 1 258 VAL 258 277 277 VAL VAL A . n A 1 259 MSE 259 278 278 MSE MSE A . n A 1 260 TYR 260 279 279 TYR TYR A . n A 1 261 GLU 261 280 280 GLU GLU A . n A 1 262 ALA 262 281 281 ALA ALA A . n A 1 263 GLU 263 282 282 GLU GLU A . n A 1 264 ASN 264 283 283 ASN ASN A . n A 1 265 ASN 265 284 284 ASN ASN A . n A 1 266 SER 266 285 285 SER SER A . n A 1 267 ILE 267 286 286 ILE ILE A . n A 1 268 MSE 268 287 287 MSE MSE A . n A 1 269 LEU 269 288 288 LEU LEU A . n A 1 270 ASN 270 289 289 ASN ASN A . n A 1 271 GLY 271 290 290 GLY GLY A . n A 1 272 ASP 272 291 291 ASP ASP A . n A 1 273 ASN 273 292 292 ASN ASN A . n A 1 274 VAL 274 293 293 VAL VAL A . n A 1 275 PHE 275 294 294 PHE PHE A . n A 1 276 ASN 276 295 295 ASN ASN A . n A 1 277 SER 277 296 296 SER SER A . n A 1 278 ASP 278 297 297 ASP ASP A . n A 1 279 LYS 279 298 298 LYS LYS A . n A 1 280 LEU 280 299 299 LEU LEU A . n A 1 281 VAL 281 300 300 VAL VAL A . n A 1 282 LEU 282 301 301 LEU LEU A . n A 1 283 LEU 283 302 302 LEU LEU A . n A 1 284 ALA 284 303 303 ALA ALA A . n A 1 285 ARG 285 304 304 ARG ARG A . n A 1 286 ILE 286 305 305 ILE ILE A . n A 1 287 GLU 287 306 306 GLU GLU A . n A 1 288 PRO 288 307 307 PRO PRO A . n A 1 289 GLU 289 308 308 GLU GLU A . n A 1 290 ASP 290 309 309 ASP ASP A . n A 1 291 ILE 291 310 310 ILE ILE A . n A 1 292 VAL 292 311 311 VAL VAL A . n A 1 293 GLU 293 312 312 GLU GLU A . n A 1 294 SER 294 313 313 SER SER A . n A 1 295 ASP 295 314 314 ASP ASP A . n A 1 296 GLU 296 315 315 GLU GLU A . n A 1 297 TRP 297 316 316 TRP TRP A . n A 1 298 ASN 298 317 317 ASN ASN A . n A 1 299 GLU 299 318 318 GLU GLU A . n A 1 300 PHE 300 319 319 PHE PHE A . n A 1 301 THR 301 320 320 THR THR A . n A 1 302 ILE 302 321 321 ILE ILE A . n A 1 303 HIS 303 322 322 HIS HIS A . n A 1 304 PHE 304 323 323 PHE PHE A . n A 1 305 GLU 305 324 324 GLU GLU A . n A 1 306 SER 306 325 325 SER SER A . n A 1 307 VAL 307 326 326 VAL VAL A . n A 1 308 LYS 308 327 327 LYS LYS A . n A 1 309 GLY 309 328 328 GLY GLY A . n A 1 310 ARG 310 329 329 ARG ARG A . n A 1 311 GLU 311 330 330 GLU GLU A . n A 1 312 ILE 312 331 331 ILE ILE A . n A 1 313 ASP 313 332 332 ASP ASP A . n A 1 314 ASP 314 333 333 ASP ASP A . n A 1 315 THR 315 334 334 THR THR A . n A 1 316 LYS 316 335 335 LYS LYS A . n A 1 317 LEU 317 336 336 LEU LEU A . n A 1 318 GLN 318 337 337 GLN GLN A . n A 1 319 ASN 319 338 338 ASN ASN A . n A 1 320 GLY 320 339 339 GLY GLY A . n A 1 321 LYS 321 340 340 LYS LYS A . n A 1 322 TYR 322 341 341 TYR TYR A . n A 1 323 LYS 323 342 342 LYS LYS A . n A 1 324 LEU 324 343 343 LEU LEU A . n A 1 325 GLY 325 344 344 GLY GLY A . n A 1 326 ILE 326 345 345 ILE ILE A . n A 1 327 VAL 327 346 346 VAL VAL A . n A 1 328 LEU 328 347 347 LEU LEU A . n A 1 329 SER 329 348 348 SER SER A . n A 1 330 SER 330 349 349 SER SER A . n A 1 331 SER 331 350 350 SER SER A . n A 1 332 VAL 332 351 351 VAL VAL A . n A 1 333 ASP 333 352 352 ASP ASP A . n A 1 334 GLY 334 353 353 GLY GLY A . n A 1 335 ALA 335 354 354 ALA ALA A . n A 1 336 TYR 336 355 355 TYR TYR A . n A 1 337 PHE 337 356 356 PHE PHE A . n A 1 338 ARG 338 357 357 ARG ARG A . n A 1 339 GLY 339 358 358 GLY GLY A . n A 1 340 ALA 340 359 359 ALA ALA A . n A 1 341 VAL 341 360 360 VAL VAL A . n A 1 342 GLY 342 361 361 GLY GLY A . n A 1 343 SER 343 362 362 SER SER A . n A 1 344 THR 344 363 363 THR THR A . n A 1 345 LEU 345 364 364 LEU LEU A . n A 1 346 TYR 346 365 365 TYR TYR A . n A 1 347 VAL 347 366 366 VAL VAL A . n A 1 348 ASP 348 367 367 ASP ASP A . n A 1 349 GLU 349 368 368 GLU GLU A . n A 1 350 LEU 350 369 369 LEU LEU A . n A 1 351 GLU 351 370 370 GLU GLU A . n A 1 352 LEU 352 371 371 LEU LEU A . n A 1 353 ILE 353 372 372 ILE ILE A . n A 1 354 CYS 354 373 373 CYS CYS A . n A 1 355 LYS 355 374 374 LYS LYS A . n A 1 356 GLU 356 375 375 GLU GLU A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX 1 401 376 UNX UNX A . C 3 CL 1 402 377 CL CL A . D 4 SO4 1 403 378 SO4 SO4 A . E 5 GOL 1 404 379 GOL GOL A . F 5 GOL 1 405 380 GOL GOL A . G 5 GOL 1 406 381 GOL GOL A . H 5 GOL 1 407 382 GOL GOL A . I 6 HOH 1 501 383 HOH HOH A . I 6 HOH 2 502 384 HOH HOH A . I 6 HOH 3 503 385 HOH HOH A . I 6 HOH 4 504 386 HOH HOH A . I 6 HOH 5 505 387 HOH HOH A . I 6 HOH 6 506 388 HOH HOH A . I 6 HOH 7 507 389 HOH HOH A . I 6 HOH 8 508 390 HOH HOH A . I 6 HOH 9 509 391 HOH HOH A . I 6 HOH 10 510 392 HOH HOH A . I 6 HOH 11 511 393 HOH HOH A . I 6 HOH 12 512 394 HOH HOH A . I 6 HOH 13 513 395 HOH HOH A . I 6 HOH 14 514 396 HOH HOH A . I 6 HOH 15 515 397 HOH HOH A . I 6 HOH 16 516 398 HOH HOH A . I 6 HOH 17 517 399 HOH HOH A . I 6 HOH 18 518 400 HOH HOH A . I 6 HOH 19 519 401 HOH HOH A . I 6 HOH 20 520 402 HOH HOH A . I 6 HOH 21 521 403 HOH HOH A . I 6 HOH 22 522 404 HOH HOH A . I 6 HOH 23 523 405 HOH HOH A . I 6 HOH 24 524 406 HOH HOH A . I 6 HOH 25 525 407 HOH HOH A . I 6 HOH 26 526 408 HOH HOH A . I 6 HOH 27 527 409 HOH HOH A . I 6 HOH 28 528 410 HOH HOH A . I 6 HOH 29 529 411 HOH HOH A . I 6 HOH 30 530 412 HOH HOH A . I 6 HOH 31 531 413 HOH HOH A . I 6 HOH 32 532 414 HOH HOH A . I 6 HOH 33 533 415 HOH HOH A . I 6 HOH 34 534 416 HOH HOH A . I 6 HOH 35 535 417 HOH HOH A . I 6 HOH 36 536 418 HOH HOH A . I 6 HOH 37 537 419 HOH HOH A . I 6 HOH 38 538 420 HOH HOH A . I 6 HOH 39 539 421 HOH HOH A . I 6 HOH 40 540 422 HOH HOH A . I 6 HOH 41 541 423 HOH HOH A . I 6 HOH 42 542 424 HOH HOH A . I 6 HOH 43 543 425 HOH HOH A . I 6 HOH 44 544 426 HOH HOH A . I 6 HOH 45 545 427 HOH HOH A . I 6 HOH 46 546 428 HOH HOH A . I 6 HOH 47 547 429 HOH HOH A . I 6 HOH 48 548 430 HOH HOH A . I 6 HOH 49 549 431 HOH HOH A . I 6 HOH 50 550 432 HOH HOH A . I 6 HOH 51 551 433 HOH HOH A . I 6 HOH 52 552 434 HOH HOH A . I 6 HOH 53 553 435 HOH HOH A . I 6 HOH 54 554 436 HOH HOH A . I 6 HOH 55 555 437 HOH HOH A . I 6 HOH 56 556 438 HOH HOH A . I 6 HOH 57 557 439 HOH HOH A . I 6 HOH 58 558 440 HOH HOH A . I 6 HOH 59 559 441 HOH HOH A . I 6 HOH 60 560 442 HOH HOH A . I 6 HOH 61 561 443 HOH HOH A . I 6 HOH 62 562 444 HOH HOH A . I 6 HOH 63 563 445 HOH HOH A . I 6 HOH 64 564 446 HOH HOH A . I 6 HOH 65 565 447 HOH HOH A . I 6 HOH 66 566 448 HOH HOH A . I 6 HOH 67 567 449 HOH HOH A . I 6 HOH 68 568 450 HOH HOH A . I 6 HOH 69 569 451 HOH HOH A . I 6 HOH 70 570 452 HOH HOH A . I 6 HOH 71 571 453 HOH HOH A . I 6 HOH 72 572 454 HOH HOH A . I 6 HOH 73 573 455 HOH HOH A . I 6 HOH 74 574 456 HOH HOH A . I 6 HOH 75 575 457 HOH HOH A . I 6 HOH 76 576 458 HOH HOH A . I 6 HOH 77 577 459 HOH HOH A . I 6 HOH 78 578 460 HOH HOH A . I 6 HOH 79 579 461 HOH HOH A . I 6 HOH 80 580 462 HOH HOH A . I 6 HOH 81 581 463 HOH HOH A . I 6 HOH 82 582 464 HOH HOH A . I 6 HOH 83 583 465 HOH HOH A . I 6 HOH 84 584 466 HOH HOH A . I 6 HOH 85 585 467 HOH HOH A . I 6 HOH 86 586 468 HOH HOH A . I 6 HOH 87 587 469 HOH HOH A . I 6 HOH 88 588 470 HOH HOH A . I 6 HOH 89 589 471 HOH HOH A . I 6 HOH 90 590 472 HOH HOH A . I 6 HOH 91 591 473 HOH HOH A . I 6 HOH 92 592 474 HOH HOH A . I 6 HOH 93 593 475 HOH HOH A . I 6 HOH 94 594 476 HOH HOH A . I 6 HOH 95 595 477 HOH HOH A . I 6 HOH 96 596 478 HOH HOH A . I 6 HOH 97 597 479 HOH HOH A . I 6 HOH 98 598 480 HOH HOH A . I 6 HOH 99 599 481 HOH HOH A . I 6 HOH 100 600 482 HOH HOH A . I 6 HOH 101 601 483 HOH HOH A . I 6 HOH 102 602 484 HOH HOH A . I 6 HOH 103 603 485 HOH HOH A . I 6 HOH 104 604 486 HOH HOH A . I 6 HOH 105 605 487 HOH HOH A . I 6 HOH 106 606 488 HOH HOH A . I 6 HOH 107 607 489 HOH HOH A . I 6 HOH 108 608 490 HOH HOH A . I 6 HOH 109 609 491 HOH HOH A . I 6 HOH 110 610 492 HOH HOH A . I 6 HOH 111 611 493 HOH HOH A . I 6 HOH 112 612 494 HOH HOH A . I 6 HOH 113 613 495 HOH HOH A . I 6 HOH 114 614 496 HOH HOH A . I 6 HOH 115 615 497 HOH HOH A . I 6 HOH 116 616 498 HOH HOH A . I 6 HOH 117 617 499 HOH HOH A . I 6 HOH 118 618 500 HOH HOH A . I 6 HOH 119 619 501 HOH HOH A . I 6 HOH 120 620 502 HOH HOH A . I 6 HOH 121 621 503 HOH HOH A . I 6 HOH 122 622 504 HOH HOH A . I 6 HOH 123 623 505 HOH HOH A . I 6 HOH 124 624 506 HOH HOH A . I 6 HOH 125 625 507 HOH HOH A . I 6 HOH 126 626 508 HOH HOH A . I 6 HOH 127 627 509 HOH HOH A . I 6 HOH 128 628 510 HOH HOH A . I 6 HOH 129 629 511 HOH HOH A . I 6 HOH 130 630 512 HOH HOH A . I 6 HOH 131 631 513 HOH HOH A . I 6 HOH 132 632 514 HOH HOH A . I 6 HOH 133 633 515 HOH HOH A . I 6 HOH 134 634 516 HOH HOH A . I 6 HOH 135 635 517 HOH HOH A . I 6 HOH 136 636 518 HOH HOH A . I 6 HOH 137 637 519 HOH HOH A . I 6 HOH 138 638 520 HOH HOH A . I 6 HOH 139 639 521 HOH HOH A . I 6 HOH 140 640 522 HOH HOH A . I 6 HOH 141 641 523 HOH HOH A . I 6 HOH 142 642 524 HOH HOH A . I 6 HOH 143 643 525 HOH HOH A . I 6 HOH 144 644 526 HOH HOH A . I 6 HOH 145 645 527 HOH HOH A . I 6 HOH 146 646 528 HOH HOH A . I 6 HOH 147 647 529 HOH HOH A . I 6 HOH 148 648 530 HOH HOH A . I 6 HOH 149 649 531 HOH HOH A . I 6 HOH 150 650 532 HOH HOH A . I 6 HOH 151 651 533 HOH HOH A . I 6 HOH 152 652 534 HOH HOH A . I 6 HOH 153 653 535 HOH HOH A . I 6 HOH 154 654 536 HOH HOH A . I 6 HOH 155 655 537 HOH HOH A . I 6 HOH 156 656 538 HOH HOH A . I 6 HOH 157 657 539 HOH HOH A . I 6 HOH 158 658 540 HOH HOH A . I 6 HOH 159 659 541 HOH HOH A . I 6 HOH 160 660 542 HOH HOH A . I 6 HOH 161 661 543 HOH HOH A . I 6 HOH 162 662 544 HOH HOH A . I 6 HOH 163 663 545 HOH HOH A . I 6 HOH 164 664 546 HOH HOH A . I 6 HOH 165 665 547 HOH HOH A . I 6 HOH 166 666 548 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 152 A MSE 171 ? MET SELENOMETHIONINE 2 A MSE 186 A MSE 205 ? MET SELENOMETHIONINE 3 A MSE 189 A MSE 208 ? MET SELENOMETHIONINE 4 A MSE 259 A MSE 278 ? MET SELENOMETHIONINE 5 A MSE 268 A MSE 287 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4020 ? 1 MORE -65 ? 1 'SSA (A^2)' 32440 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_455 y-1/3,x+1/3,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 -66.9400000000 0.8660254038 0.5000000000 0.0000000000 38.6478270196 0.0000000000 0.0000000000 -1.0000000000 42.4993333333 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id SO4 _pdbx_struct_special_symmetry.auth_seq_id 403 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id SO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-24 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_citation_author.name' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_ref_seq_dif.details' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.3570 _pdbx_refine_tls.origin_y 32.2330 _pdbx_refine_tls.origin_z 19.2720 _pdbx_refine_tls.T[1][1] 0.0186 _pdbx_refine_tls.T[2][2] 0.0622 _pdbx_refine_tls.T[3][3] 0.0652 _pdbx_refine_tls.T[1][2] 0.0138 _pdbx_refine_tls.T[1][3] 0.0104 _pdbx_refine_tls.T[2][3] -0.0077 _pdbx_refine_tls.L[1][1] 0.5632 _pdbx_refine_tls.L[2][2] 0.4978 _pdbx_refine_tls.L[3][3] 0.8964 _pdbx_refine_tls.L[1][2] 0.2146 _pdbx_refine_tls.L[1][3] 0.3081 _pdbx_refine_tls.L[2][3] 0.0519 _pdbx_refine_tls.S[1][1] 0.0012 _pdbx_refine_tls.S[2][2] 0.0429 _pdbx_refine_tls.S[3][3] -0.0441 _pdbx_refine_tls.S[1][2] -0.0269 _pdbx_refine_tls.S[1][3] -0.0874 _pdbx_refine_tls.S[2][3] -0.1227 _pdbx_refine_tls.S[2][1] 0.0450 _pdbx_refine_tls.S[3][1] 0.0078 _pdbx_refine_tls.S[3][2] 0.1192 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 28 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 375 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'July 4, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.compound_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (RESIDUES 21-375) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.entry_id 4JRL _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 107 ? ? -37.82 -36.52 2 1 MSE A 208 ? ? -117.27 68.95 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 28 ? CG ? A GLU 9 CG 2 1 Y 1 A GLU 28 ? CD ? A GLU 9 CD 3 1 Y 1 A GLU 28 ? OE1 ? A GLU 9 OE1 4 1 Y 1 A GLU 28 ? OE2 ? A GLU 9 OE2 5 1 Y 1 A GLN 72 ? CG ? A GLN 53 CG 6 1 Y 1 A GLN 72 ? CD ? A GLN 53 CD 7 1 Y 1 A GLN 72 ? OE1 ? A GLN 53 OE1 8 1 Y 1 A GLN 72 ? NE2 ? A GLN 53 NE2 9 1 Y 1 A LYS 207 ? CE ? A LYS 188 CE 10 1 Y 1 A LYS 207 ? NZ ? A LYS 188 NZ 11 1 Y 1 A LYS 253 ? CD ? A LYS 234 CD 12 1 Y 1 A LYS 253 ? CE ? A LYS 234 CE 13 1 Y 1 A LYS 253 ? NZ ? A LYS 234 NZ 14 1 Y 1 A GLU 315 ? CG ? A GLU 296 CG 15 1 Y 1 A GLU 315 ? CD ? A GLU 296 CD 16 1 Y 1 A GLU 315 ? OE1 ? A GLU 296 OE1 17 1 Y 1 A GLU 315 ? OE2 ? A GLU 296 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 21 ? A GLN 2 3 1 Y 1 A ASP 22 ? A ASP 3 4 1 Y 1 A GLU 23 ? A GLU 4 5 1 Y 1 A ALA 24 ? A ALA 5 6 1 Y 1 A LEU 25 ? A LEU 6 7 1 Y 1 A ASN 26 ? A ASN 7 8 1 Y 1 A SER 27 ? A SER 8 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN ATOM OR ION' UNX 3 'CHLORIDE ION' CL 4 'SULFATE ION' SO4 5 GLYCEROL GOL 6 water HOH #