data_4JRN # _entry.id 4JRN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JRN RCSB RCSB078417 WWPDB D_1000078417 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JRN _pdbx_database_status.recvd_initial_deposition_date 2013-03-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lim, D.' 1 'Gold, D.A.' 2 'Lindsay, J.' 3 'Rosowski, E.E.' 4 'Niedelman, W.' 5 'Yaffe, M.B.' 6 'Saeij, J.P.J.' 7 # _citation.id primary _citation.title 'Structure of the Toxoplasma gondii ROP18 kinase domain reveals a second ligand binding pocket required for acute virulence.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 34968 _citation.page_last 34980 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24129568 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.523266 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lim, D.' 1 ? primary 'Gold, D.A.' 2 ? primary 'Julien, L.' 3 ? primary 'Rosowski, E.E.' 4 ? primary 'Niedelman, W.' 5 ? primary 'Yaffe, M.B.' 6 ? primary 'Saeij, J.P.' 7 ? # _cell.entry_id 4JRN _cell.length_a 48.650 _cell.length_b 48.650 _cell.length_c 293.746 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JRN _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Rhoptry kinase family protein' 41506.164 1 ? ? 'unp residues 187-554' ? 2 branched man 'beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 506.196 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 water nat water 18.015 8 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Rhoptry protein 18, Rhoptry protein, putative' 2 sucrose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAHMSELVFEKADSGCVIGKRILAHMQEQIGQPQALENSERLDRILTVAAWPPDVPKRFVSVTTGETRTLVRGAPLGSGG FATVYEATDVETNEELAVKVFMSEKEPTDETMLDLQRESSCYRNFSLAKTAKDAQESCRFMVPSDVVMLEGQPASTEVVI GLTTRWVPNYFLLMMRAEADMSKVISWVFGDASVNKSEFGLVVRMYLSSQAIKLVANVQAQGIVHTDIKPANFLLLKDGR LFLGDFGTYRINNSVGRAIGTPGYEPPERPFQATGITYTFPTDAWQLGITLYCIWCKERPTPADGIWDYLHFADCPSTPE LVQDLIRSLLNRDPQKRMLPLQALETAAFKEMDSVVKGAAQNFEQQEHLHTE ; _entity_poly.pdbx_seq_one_letter_code_can ;GAHMSELVFEKADSGCVIGKRILAHMQEQIGQPQALENSERLDRILTVAAWPPDVPKRFVSVTTGETRTLVRGAPLGSGG FATVYEATDVETNEELAVKVFMSEKEPTDETMLDLQRESSCYRNFSLAKTAKDAQESCRFMVPSDVVMLEGQPASTEVVI GLTTRWVPNYFLLMMRAEADMSKVISWVFGDASVNKSEFGLVVRMYLSSQAIKLVANVQAQGIVHTDIKPANFLLLKDGR LFLGDFGTYRINNSVGRAIGTPGYEPPERPFQATGITYTFPTDAWQLGITLYCIWCKERPTPADGIWDYLHFADCPSTPE LVQDLIRSLLNRDPQKRMLPLQALETAAFKEMDSVVKGAAQNFEQQEHLHTE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 GLU n 1 7 LEU n 1 8 VAL n 1 9 PHE n 1 10 GLU n 1 11 LYS n 1 12 ALA n 1 13 ASP n 1 14 SER n 1 15 GLY n 1 16 CYS n 1 17 VAL n 1 18 ILE n 1 19 GLY n 1 20 LYS n 1 21 ARG n 1 22 ILE n 1 23 LEU n 1 24 ALA n 1 25 HIS n 1 26 MET n 1 27 GLN n 1 28 GLU n 1 29 GLN n 1 30 ILE n 1 31 GLY n 1 32 GLN n 1 33 PRO n 1 34 GLN n 1 35 ALA n 1 36 LEU n 1 37 GLU n 1 38 ASN n 1 39 SER n 1 40 GLU n 1 41 ARG n 1 42 LEU n 1 43 ASP n 1 44 ARG n 1 45 ILE n 1 46 LEU n 1 47 THR n 1 48 VAL n 1 49 ALA n 1 50 ALA n 1 51 TRP n 1 52 PRO n 1 53 PRO n 1 54 ASP n 1 55 VAL n 1 56 PRO n 1 57 LYS n 1 58 ARG n 1 59 PHE n 1 60 VAL n 1 61 SER n 1 62 VAL n 1 63 THR n 1 64 THR n 1 65 GLY n 1 66 GLU n 1 67 THR n 1 68 ARG n 1 69 THR n 1 70 LEU n 1 71 VAL n 1 72 ARG n 1 73 GLY n 1 74 ALA n 1 75 PRO n 1 76 LEU n 1 77 GLY n 1 78 SER n 1 79 GLY n 1 80 GLY n 1 81 PHE n 1 82 ALA n 1 83 THR n 1 84 VAL n 1 85 TYR n 1 86 GLU n 1 87 ALA n 1 88 THR n 1 89 ASP n 1 90 VAL n 1 91 GLU n 1 92 THR n 1 93 ASN n 1 94 GLU n 1 95 GLU n 1 96 LEU n 1 97 ALA n 1 98 VAL n 1 99 LYS n 1 100 VAL n 1 101 PHE n 1 102 MET n 1 103 SER n 1 104 GLU n 1 105 LYS n 1 106 GLU n 1 107 PRO n 1 108 THR n 1 109 ASP n 1 110 GLU n 1 111 THR n 1 112 MET n 1 113 LEU n 1 114 ASP n 1 115 LEU n 1 116 GLN n 1 117 ARG n 1 118 GLU n 1 119 SER n 1 120 SER n 1 121 CYS n 1 122 TYR n 1 123 ARG n 1 124 ASN n 1 125 PHE n 1 126 SER n 1 127 LEU n 1 128 ALA n 1 129 LYS n 1 130 THR n 1 131 ALA n 1 132 LYS n 1 133 ASP n 1 134 ALA n 1 135 GLN n 1 136 GLU n 1 137 SER n 1 138 CYS n 1 139 ARG n 1 140 PHE n 1 141 MET n 1 142 VAL n 1 143 PRO n 1 144 SER n 1 145 ASP n 1 146 VAL n 1 147 VAL n 1 148 MET n 1 149 LEU n 1 150 GLU n 1 151 GLY n 1 152 GLN n 1 153 PRO n 1 154 ALA n 1 155 SER n 1 156 THR n 1 157 GLU n 1 158 VAL n 1 159 VAL n 1 160 ILE n 1 161 GLY n 1 162 LEU n 1 163 THR n 1 164 THR n 1 165 ARG n 1 166 TRP n 1 167 VAL n 1 168 PRO n 1 169 ASN n 1 170 TYR n 1 171 PHE n 1 172 LEU n 1 173 LEU n 1 174 MET n 1 175 MET n 1 176 ARG n 1 177 ALA n 1 178 GLU n 1 179 ALA n 1 180 ASP n 1 181 MET n 1 182 SER n 1 183 LYS n 1 184 VAL n 1 185 ILE n 1 186 SER n 1 187 TRP n 1 188 VAL n 1 189 PHE n 1 190 GLY n 1 191 ASP n 1 192 ALA n 1 193 SER n 1 194 VAL n 1 195 ASN n 1 196 LYS n 1 197 SER n 1 198 GLU n 1 199 PHE n 1 200 GLY n 1 201 LEU n 1 202 VAL n 1 203 VAL n 1 204 ARG n 1 205 MET n 1 206 TYR n 1 207 LEU n 1 208 SER n 1 209 SER n 1 210 GLN n 1 211 ALA n 1 212 ILE n 1 213 LYS n 1 214 LEU n 1 215 VAL n 1 216 ALA n 1 217 ASN n 1 218 VAL n 1 219 GLN n 1 220 ALA n 1 221 GLN n 1 222 GLY n 1 223 ILE n 1 224 VAL n 1 225 HIS n 1 226 THR n 1 227 ASP n 1 228 ILE n 1 229 LYS n 1 230 PRO n 1 231 ALA n 1 232 ASN n 1 233 PHE n 1 234 LEU n 1 235 LEU n 1 236 LEU n 1 237 LYS n 1 238 ASP n 1 239 GLY n 1 240 ARG n 1 241 LEU n 1 242 PHE n 1 243 LEU n 1 244 GLY n 1 245 ASP n 1 246 PHE n 1 247 GLY n 1 248 THR n 1 249 TYR n 1 250 ARG n 1 251 ILE n 1 252 ASN n 1 253 ASN n 1 254 SER n 1 255 VAL n 1 256 GLY n 1 257 ARG n 1 258 ALA n 1 259 ILE n 1 260 GLY n 1 261 THR n 1 262 PRO n 1 263 GLY n 1 264 TYR n 1 265 GLU n 1 266 PRO n 1 267 PRO n 1 268 GLU n 1 269 ARG n 1 270 PRO n 1 271 PHE n 1 272 GLN n 1 273 ALA n 1 274 THR n 1 275 GLY n 1 276 ILE n 1 277 THR n 1 278 TYR n 1 279 THR n 1 280 PHE n 1 281 PRO n 1 282 THR n 1 283 ASP n 1 284 ALA n 1 285 TRP n 1 286 GLN n 1 287 LEU n 1 288 GLY n 1 289 ILE n 1 290 THR n 1 291 LEU n 1 292 TYR n 1 293 CYS n 1 294 ILE n 1 295 TRP n 1 296 CYS n 1 297 LYS n 1 298 GLU n 1 299 ARG n 1 300 PRO n 1 301 THR n 1 302 PRO n 1 303 ALA n 1 304 ASP n 1 305 GLY n 1 306 ILE n 1 307 TRP n 1 308 ASP n 1 309 TYR n 1 310 LEU n 1 311 HIS n 1 312 PHE n 1 313 ALA n 1 314 ASP n 1 315 CYS n 1 316 PRO n 1 317 SER n 1 318 THR n 1 319 PRO n 1 320 GLU n 1 321 LEU n 1 322 VAL n 1 323 GLN n 1 324 ASP n 1 325 LEU n 1 326 ILE n 1 327 ARG n 1 328 SER n 1 329 LEU n 1 330 LEU n 1 331 ASN n 1 332 ARG n 1 333 ASP n 1 334 PRO n 1 335 GLN n 1 336 LYS n 1 337 ARG n 1 338 MET n 1 339 LEU n 1 340 PRO n 1 341 LEU n 1 342 GLN n 1 343 ALA n 1 344 LEU n 1 345 GLU n 1 346 THR n 1 347 ALA n 1 348 ALA n 1 349 PHE n 1 350 LYS n 1 351 GLU n 1 352 MET n 1 353 ASP n 1 354 SER n 1 355 VAL n 1 356 VAL n 1 357 LYS n 1 358 GLY n 1 359 ALA n 1 360 ALA n 1 361 GLN n 1 362 ASN n 1 363 PHE n 1 364 GLU n 1 365 GLN n 1 366 GLN n 1 367 GLU n 1 368 HIS n 1 369 LEU n 1 370 HIS n 1 371 THR n 1 372 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rop18, ROP18, TGGT1_063760' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Toxoplasma gondii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5811 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2PAY2_TOXGO _struct_ref.pdbx_db_accession Q2PAY2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SELVFEKADSGCVIGKRILAHMQEQIGQPQALENSERLDRILTVAAWPPDVPKRFVSVTTGETRTLVRGAPLGSGGFATV YEATDVETNEELAVKVFMSEKEPTDETMLDLQRESSCYRNFSLAKTAKDAQESCRFMVPSDVVMLEGQPASTEVVIGLTT RWVPNYFLLMMRAEADMSKVISWVFGDASVNKSEFGLVVRMYLSSQAIKLVANVQAQGIVHTDIKPANFLLLKDGRLFLG DFGTYRINNSVGRAIGTPGYEPPERPFQATGITYTFPTDAWQLGITLYCIWCKERPTPADGIWDYLHFADCPSTPELVQD LIRSLLNRDPQKRMLPLQALETAAFKEMDSVVKGAAQNFEQQEHLHTE ; _struct_ref.pdbx_align_begin 187 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JRN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 372 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2PAY2 _struct_ref_seq.db_align_beg 187 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 554 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 187 _struct_ref_seq.pdbx_auth_seq_align_end 554 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JRN GLY A 1 ? UNP Q2PAY2 ? ? 'expression tag' 183 1 1 4JRN ALA A 2 ? UNP Q2PAY2 ? ? 'expression tag' 184 2 1 4JRN HIS A 3 ? UNP Q2PAY2 ? ? 'expression tag' 185 3 1 4JRN MET A 4 ? UNP Q2PAY2 ? ? 'expression tag' 186 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ANP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' ? 'C10 H17 N6 O12 P3' 506.196 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FRU 'D-saccharide, beta linking' . beta-D-fructofuranose ? 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4JRN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.56 M ammonium sulfate, 15% PEG 3350, 0.1 M Bis-Tris, 20 mM IPTG, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-04-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97918 1.0 2 1.53500 1.0 3 1.53570 1.0 4 1.53450 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97918, 1.53500, 1.53570, 1.53450' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4JRN _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.7 _reflns.number_obs 12398 _reflns.number_all 13669 _reflns.percent_possible_obs 91.5 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.376 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4JRN _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11778 _refine.ls_number_reflns_all 13669 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.545 _refine.ls_d_res_high 2.710 _refine.ls_percent_reflns_obs 99.61 _refine.ls_R_factor_obs 0.2348 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2318 _refine.ls_R_factor_R_free 0.2895 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.03 _refine.ls_number_reflns_R_free 592 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 11.1229 _refine.aniso_B[2][2] 11.1229 _refine.aniso_B[3][3] -22.2458 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.41 _refine.pdbx_overall_phase_error 31.42 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2736 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 2800 _refine_hist.d_res_high 2.710 _refine_hist.d_res_low 36.545 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.002 ? ? 2850 'X-RAY DIFFRACTION' ? f_angle_d 0.602 ? ? 3874 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.858 ? ? 1079 'X-RAY DIFFRACTION' ? f_chiral_restr 0.045 ? ? 432 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 491 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.7099 2.9825 2682 0.3008 100.00 0.3739 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.9825 3.4138 2745 0.2730 100.00 0.3139 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.4138 4.3000 2793 0.2280 100.00 0.3087 . . 150 . . . . 'X-RAY DIFFRACTION' . 4.3000 36.5481 2966 0.2038 99.00 0.2465 . . 158 . . . . # _struct.entry_id 4JRN _struct.title 'ROP18 kinase domain in complex with AMP-PNP and sucrose' _struct.pdbx_descriptor 'Rhoptry kinase family protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JRN _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'protein kinase, kinase, membrane, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 14 ? GLN A 27 ? SER A 196 GLN A 209 1 ? 14 HELX_P HELX_P2 2 ASN A 38 ? ALA A 49 ? ASN A 220 ALA A 231 1 ? 12 HELX_P HELX_P3 3 THR A 108 ? LEU A 115 ? THR A 290 LEU A 297 1 ? 8 HELX_P HELX_P4 4 CYS A 121 ? PHE A 125 ? CYS A 303 PHE A 307 5 ? 5 HELX_P HELX_P5 5 THR A 130 ? SER A 137 ? THR A 312 SER A 319 1 ? 8 HELX_P HELX_P6 6 MET A 181 ? GLY A 190 ? MET A 363 GLY A 372 1 ? 10 HELX_P HELX_P7 7 ASP A 191 ? LYS A 196 ? ASP A 373 LYS A 378 1 ? 6 HELX_P HELX_P8 8 SER A 197 ? GLN A 221 ? SER A 379 GLN A 403 1 ? 25 HELX_P HELX_P9 9 LYS A 229 ? ALA A 231 ? LYS A 411 ALA A 413 5 ? 3 HELX_P HELX_P10 10 ASP A 245 ? TYR A 249 ? ASP A 427 TYR A 431 5 ? 5 HELX_P HELX_P11 11 THR A 279 ? LYS A 297 ? THR A 461 LYS A 479 1 ? 19 HELX_P HELX_P12 12 THR A 301 ? GLY A 305 ? THR A 483 GLY A 487 5 ? 5 HELX_P HELX_P13 13 PRO A 319 ? LEU A 330 ? PRO A 501 LEU A 512 1 ? 12 HELX_P HELX_P14 14 LEU A 339 ? LEU A 344 ? LEU A 521 LEU A 526 1 ? 6 HELX_P HELX_P15 15 THR A 346 ? GLN A 365 ? THR A 528 GLN A 547 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 296 SG ? ? ? 1_555 A CYS 315 SG ? ? A CYS 478 A CYS 497 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale both ? B GLC . C1 ? ? ? 1_555 B FRU . O2 ? ? B GLC 1 B FRU 2 1_555 ? ? ? ? ? ? ? 1.448 sing ? metalc1 metalc ? ? A ASP 245 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 427 A MG 603 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc2 metalc ? ? A ASP 245 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 427 A MG 603 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc3 metalc ? ? C ANP . O3G ? ? ? 1_555 E MG . MG ? ? A ANP 601 A MG 603 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc4 metalc ? ? C ANP . O1G ? ? ? 1_555 E MG . MG ? ? A ANP 601 A MG 603 1_555 ? ? ? ? ? ? ? 2.459 ? ? metalc5 metalc ? ? C ANP . O2B ? ? ? 1_555 E MG . MG ? ? A ANP 601 A MG 603 1_555 ? ? ? ? ? ? ? 2.646 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 3 ? D ? 2 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 57 ? SER A 61 ? LYS A 239 SER A 243 A 2 THR A 67 ? SER A 78 ? THR A 249 SER A 260 A 3 ALA A 82 ? ASP A 89 ? ALA A 264 ASP A 271 A 4 GLU A 95 ? PHE A 101 ? GLU A 277 PHE A 283 A 5 PHE A 171 ? MET A 175 ? PHE A 353 MET A 357 A 6 ASP A 145 ? LEU A 149 ? ASP A 327 LEU A 331 A 7 LYS A 57 ? SER A 61 ? LYS A 239 SER A 243 B 1 SER A 155 ? ILE A 160 ? SER A 337 ILE A 342 B 2 THR A 163 ? PRO A 168 ? THR A 345 PRO A 350 C 1 ALA A 179 ? ASP A 180 ? ALA A 361 ASP A 362 C 2 PHE A 233 ? LEU A 235 ? PHE A 415 LEU A 417 C 3 LEU A 241 ? LEU A 243 ? LEU A 423 LEU A 425 D 1 ILE A 223 ? VAL A 224 ? ILE A 405 VAL A 406 D 2 ARG A 250 ? ILE A 251 ? ARG A 432 ILE A 433 E 1 SER A 254 ? GLY A 256 ? SER A 436 GLY A 438 E 2 ILE A 276 ? TYR A 278 ? ILE A 458 TYR A 460 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 59 ? N PHE A 241 O ARG A 68 ? O ARG A 250 A 2 3 N LEU A 76 ? N LEU A 258 O VAL A 84 ? O VAL A 266 A 3 4 N ALA A 87 ? N ALA A 269 O LEU A 96 ? O LEU A 278 A 4 5 N ALA A 97 ? N ALA A 279 O MET A 174 ? O MET A 356 A 5 6 O PHE A 171 ? O PHE A 353 N VAL A 147 ? N VAL A 329 A 6 7 O MET A 148 ? O MET A 330 N VAL A 60 ? N VAL A 242 B 1 2 N VAL A 158 ? N VAL A 340 O ARG A 165 ? O ARG A 347 C 1 2 N ALA A 179 ? N ALA A 361 O LEU A 235 ? O LEU A 417 C 2 3 N LEU A 234 ? N LEU A 416 O PHE A 242 ? O PHE A 424 D 1 2 N VAL A 224 ? N VAL A 406 O ARG A 250 ? O ARG A 432 E 1 2 N GLY A 256 ? N GLY A 438 O ILE A 276 ? O ILE A 458 # _database_PDB_matrix.entry_id 4JRN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JRN _atom_sites.fract_transf_matrix[1][1] 0.020555 _atom_sites.fract_transf_matrix[1][2] 0.011867 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023735 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003404 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 183 ? ? ? A . n A 1 2 ALA 2 184 ? ? ? A . n A 1 3 HIS 3 185 ? ? ? A . n A 1 4 MET 4 186 ? ? ? A . n A 1 5 SER 5 187 187 SER SER A . n A 1 6 GLU 6 188 188 GLU GLU A . n A 1 7 LEU 7 189 189 LEU LEU A . n A 1 8 VAL 8 190 190 VAL VAL A . n A 1 9 PHE 9 191 191 PHE PHE A . n A 1 10 GLU 10 192 192 GLU GLU A . n A 1 11 LYS 11 193 193 LYS LYS A . n A 1 12 ALA 12 194 194 ALA ALA A . n A 1 13 ASP 13 195 195 ASP ASP A . n A 1 14 SER 14 196 196 SER SER A . n A 1 15 GLY 15 197 197 GLY GLY A . n A 1 16 CYS 16 198 198 CYS CYS A . n A 1 17 VAL 17 199 199 VAL VAL A . n A 1 18 ILE 18 200 200 ILE ILE A . n A 1 19 GLY 19 201 201 GLY GLY A . n A 1 20 LYS 20 202 202 LYS LYS A . n A 1 21 ARG 21 203 203 ARG ARG A . n A 1 22 ILE 22 204 204 ILE ILE A . n A 1 23 LEU 23 205 205 LEU LEU A . n A 1 24 ALA 24 206 206 ALA ALA A . n A 1 25 HIS 25 207 207 HIS HIS A . n A 1 26 MET 26 208 208 MET MET A . n A 1 27 GLN 27 209 209 GLN GLN A . n A 1 28 GLU 28 210 210 GLU GLU A . n A 1 29 GLN 29 211 ? ? ? A . n A 1 30 ILE 30 212 ? ? ? A . n A 1 31 GLY 31 213 ? ? ? A . n A 1 32 GLN 32 214 ? ? ? A . n A 1 33 PRO 33 215 ? ? ? A . n A 1 34 GLN 34 216 ? ? ? A . n A 1 35 ALA 35 217 ? ? ? A . n A 1 36 LEU 36 218 218 LEU LEU A . n A 1 37 GLU 37 219 219 GLU GLU A . n A 1 38 ASN 38 220 220 ASN ASN A . n A 1 39 SER 39 221 221 SER SER A . n A 1 40 GLU 40 222 222 GLU GLU A . n A 1 41 ARG 41 223 223 ARG ARG A . n A 1 42 LEU 42 224 224 LEU LEU A . n A 1 43 ASP 43 225 225 ASP ASP A . n A 1 44 ARG 44 226 226 ARG ARG A . n A 1 45 ILE 45 227 227 ILE ILE A . n A 1 46 LEU 46 228 228 LEU LEU A . n A 1 47 THR 47 229 229 THR THR A . n A 1 48 VAL 48 230 230 VAL VAL A . n A 1 49 ALA 49 231 231 ALA ALA A . n A 1 50 ALA 50 232 232 ALA ALA A . n A 1 51 TRP 51 233 233 TRP TRP A . n A 1 52 PRO 52 234 234 PRO PRO A . n A 1 53 PRO 53 235 235 PRO PRO A . n A 1 54 ASP 54 236 236 ASP ASP A . n A 1 55 VAL 55 237 237 VAL VAL A . n A 1 56 PRO 56 238 238 PRO PRO A . n A 1 57 LYS 57 239 239 LYS LYS A . n A 1 58 ARG 58 240 240 ARG ARG A . n A 1 59 PHE 59 241 241 PHE PHE A . n A 1 60 VAL 60 242 242 VAL VAL A . n A 1 61 SER 61 243 243 SER SER A . n A 1 62 VAL 62 244 244 VAL VAL A . n A 1 63 THR 63 245 245 THR THR A . n A 1 64 THR 64 246 246 THR THR A . n A 1 65 GLY 65 247 247 GLY GLY A . n A 1 66 GLU 66 248 248 GLU GLU A . n A 1 67 THR 67 249 249 THR THR A . n A 1 68 ARG 68 250 250 ARG ARG A . n A 1 69 THR 69 251 251 THR THR A . n A 1 70 LEU 70 252 252 LEU LEU A . n A 1 71 VAL 71 253 253 VAL VAL A . n A 1 72 ARG 72 254 254 ARG ARG A . n A 1 73 GLY 73 255 255 GLY GLY A . n A 1 74 ALA 74 256 256 ALA ALA A . n A 1 75 PRO 75 257 257 PRO PRO A . n A 1 76 LEU 76 258 258 LEU LEU A . n A 1 77 GLY 77 259 259 GLY GLY A . n A 1 78 SER 78 260 260 SER SER A . n A 1 79 GLY 79 261 261 GLY GLY A . n A 1 80 GLY 80 262 262 GLY GLY A . n A 1 81 PHE 81 263 263 PHE PHE A . n A 1 82 ALA 82 264 264 ALA ALA A . n A 1 83 THR 83 265 265 THR THR A . n A 1 84 VAL 84 266 266 VAL VAL A . n A 1 85 TYR 85 267 267 TYR TYR A . n A 1 86 GLU 86 268 268 GLU GLU A . n A 1 87 ALA 87 269 269 ALA ALA A . n A 1 88 THR 88 270 270 THR THR A . n A 1 89 ASP 89 271 271 ASP ASP A . n A 1 90 VAL 90 272 272 VAL VAL A . n A 1 91 GLU 91 273 273 GLU GLU A . n A 1 92 THR 92 274 274 THR THR A . n A 1 93 ASN 93 275 275 ASN ASN A . n A 1 94 GLU 94 276 276 GLU GLU A . n A 1 95 GLU 95 277 277 GLU GLU A . n A 1 96 LEU 96 278 278 LEU LEU A . n A 1 97 ALA 97 279 279 ALA ALA A . n A 1 98 VAL 98 280 280 VAL VAL A . n A 1 99 LYS 99 281 281 LYS LYS A . n A 1 100 VAL 100 282 282 VAL VAL A . n A 1 101 PHE 101 283 283 PHE PHE A . n A 1 102 MET 102 284 284 MET MET A . n A 1 103 SER 103 285 285 SER SER A . n A 1 104 GLU 104 286 286 GLU GLU A . n A 1 105 LYS 105 287 287 LYS LYS A . n A 1 106 GLU 106 288 288 GLU GLU A . n A 1 107 PRO 107 289 289 PRO PRO A . n A 1 108 THR 108 290 290 THR THR A . n A 1 109 ASP 109 291 291 ASP ASP A . n A 1 110 GLU 110 292 292 GLU GLU A . n A 1 111 THR 111 293 293 THR THR A . n A 1 112 MET 112 294 294 MET MET A . n A 1 113 LEU 113 295 295 LEU LEU A . n A 1 114 ASP 114 296 296 ASP ASP A . n A 1 115 LEU 115 297 297 LEU LEU A . n A 1 116 GLN 116 298 298 GLN GLN A . n A 1 117 ARG 117 299 299 ARG ARG A . n A 1 118 GLU 118 300 300 GLU GLU A . n A 1 119 SER 119 301 301 SER SER A . n A 1 120 SER 120 302 302 SER SER A . n A 1 121 CYS 121 303 303 CYS CYS A . n A 1 122 TYR 122 304 304 TYR TYR A . n A 1 123 ARG 123 305 305 ARG ARG A . n A 1 124 ASN 124 306 306 ASN ASN A . n A 1 125 PHE 125 307 307 PHE PHE A . n A 1 126 SER 126 308 308 SER SER A . n A 1 127 LEU 127 309 309 LEU LEU A . n A 1 128 ALA 128 310 310 ALA ALA A . n A 1 129 LYS 129 311 311 LYS LYS A . n A 1 130 THR 130 312 312 THR THR A . n A 1 131 ALA 131 313 313 ALA ALA A . n A 1 132 LYS 132 314 314 LYS LYS A . n A 1 133 ASP 133 315 315 ASP ASP A . n A 1 134 ALA 134 316 316 ALA ALA A . n A 1 135 GLN 135 317 317 GLN GLN A . n A 1 136 GLU 136 318 318 GLU GLU A . n A 1 137 SER 137 319 319 SER SER A . n A 1 138 CYS 138 320 320 CYS CYS A . n A 1 139 ARG 139 321 321 ARG ARG A . n A 1 140 PHE 140 322 322 PHE PHE A . n A 1 141 MET 141 323 323 MET MET A . n A 1 142 VAL 142 324 324 VAL VAL A . n A 1 143 PRO 143 325 325 PRO PRO A . n A 1 144 SER 144 326 326 SER SER A . n A 1 145 ASP 145 327 327 ASP ASP A . n A 1 146 VAL 146 328 328 VAL VAL A . n A 1 147 VAL 147 329 329 VAL VAL A . n A 1 148 MET 148 330 330 MET MET A . n A 1 149 LEU 149 331 331 LEU LEU A . n A 1 150 GLU 150 332 332 GLU GLU A . n A 1 151 GLY 151 333 333 GLY GLY A . n A 1 152 GLN 152 334 334 GLN GLN A . n A 1 153 PRO 153 335 335 PRO PRO A . n A 1 154 ALA 154 336 336 ALA ALA A . n A 1 155 SER 155 337 337 SER SER A . n A 1 156 THR 156 338 338 THR THR A . n A 1 157 GLU 157 339 339 GLU GLU A . n A 1 158 VAL 158 340 340 VAL VAL A . n A 1 159 VAL 159 341 341 VAL VAL A . n A 1 160 ILE 160 342 342 ILE ILE A . n A 1 161 GLY 161 343 343 GLY GLY A . n A 1 162 LEU 162 344 344 LEU LEU A . n A 1 163 THR 163 345 345 THR THR A . n A 1 164 THR 164 346 346 THR THR A . n A 1 165 ARG 165 347 347 ARG ARG A . n A 1 166 TRP 166 348 348 TRP TRP A . n A 1 167 VAL 167 349 349 VAL VAL A . n A 1 168 PRO 168 350 350 PRO PRO A . n A 1 169 ASN 169 351 351 ASN ASN A . n A 1 170 TYR 170 352 352 TYR TYR A . n A 1 171 PHE 171 353 353 PHE PHE A . n A 1 172 LEU 172 354 354 LEU LEU A . n A 1 173 LEU 173 355 355 LEU LEU A . n A 1 174 MET 174 356 356 MET MET A . n A 1 175 MET 175 357 357 MET MET A . n A 1 176 ARG 176 358 358 ARG ARG A . n A 1 177 ALA 177 359 359 ALA ALA A . n A 1 178 GLU 178 360 360 GLU GLU A . n A 1 179 ALA 179 361 361 ALA ALA A . n A 1 180 ASP 180 362 362 ASP ASP A . n A 1 181 MET 181 363 363 MET MET A . n A 1 182 SER 182 364 364 SER SER A . n A 1 183 LYS 183 365 365 LYS LYS A . n A 1 184 VAL 184 366 366 VAL VAL A . n A 1 185 ILE 185 367 367 ILE ILE A . n A 1 186 SER 186 368 368 SER SER A . n A 1 187 TRP 187 369 369 TRP TRP A . n A 1 188 VAL 188 370 370 VAL VAL A . n A 1 189 PHE 189 371 371 PHE PHE A . n A 1 190 GLY 190 372 372 GLY GLY A . n A 1 191 ASP 191 373 373 ASP ASP A . n A 1 192 ALA 192 374 374 ALA ALA A . n A 1 193 SER 193 375 375 SER SER A . n A 1 194 VAL 194 376 376 VAL VAL A . n A 1 195 ASN 195 377 377 ASN ASN A . n A 1 196 LYS 196 378 378 LYS LYS A . n A 1 197 SER 197 379 379 SER SER A . n A 1 198 GLU 198 380 380 GLU GLU A . n A 1 199 PHE 199 381 381 PHE PHE A . n A 1 200 GLY 200 382 382 GLY GLY A . n A 1 201 LEU 201 383 383 LEU LEU A . n A 1 202 VAL 202 384 384 VAL VAL A . n A 1 203 VAL 203 385 385 VAL VAL A . n A 1 204 ARG 204 386 386 ARG ARG A . n A 1 205 MET 205 387 387 MET MET A . n A 1 206 TYR 206 388 388 TYR TYR A . n A 1 207 LEU 207 389 389 LEU LEU A . n A 1 208 SER 208 390 390 SER SER A . n A 1 209 SER 209 391 391 SER SER A . n A 1 210 GLN 210 392 392 GLN GLN A . n A 1 211 ALA 211 393 393 ALA ALA A . n A 1 212 ILE 212 394 394 ILE ILE A . n A 1 213 LYS 213 395 395 LYS LYS A . n A 1 214 LEU 214 396 396 LEU LEU A . n A 1 215 VAL 215 397 397 VAL VAL A . n A 1 216 ALA 216 398 398 ALA ALA A . n A 1 217 ASN 217 399 399 ASN ASN A . n A 1 218 VAL 218 400 400 VAL VAL A . n A 1 219 GLN 219 401 401 GLN GLN A . n A 1 220 ALA 220 402 402 ALA ALA A . n A 1 221 GLN 221 403 403 GLN GLN A . n A 1 222 GLY 222 404 404 GLY GLY A . n A 1 223 ILE 223 405 405 ILE ILE A . n A 1 224 VAL 224 406 406 VAL VAL A . n A 1 225 HIS 225 407 407 HIS HIS A . n A 1 226 THR 226 408 408 THR THR A . n A 1 227 ASP 227 409 409 ASP ASP A . n A 1 228 ILE 228 410 410 ILE ILE A . n A 1 229 LYS 229 411 411 LYS LYS A . n A 1 230 PRO 230 412 412 PRO PRO A . n A 1 231 ALA 231 413 413 ALA ALA A . n A 1 232 ASN 232 414 414 ASN ASN A . n A 1 233 PHE 233 415 415 PHE PHE A . n A 1 234 LEU 234 416 416 LEU LEU A . n A 1 235 LEU 235 417 417 LEU LEU A . n A 1 236 LEU 236 418 418 LEU LEU A . n A 1 237 LYS 237 419 419 LYS LYS A . n A 1 238 ASP 238 420 420 ASP ASP A . n A 1 239 GLY 239 421 421 GLY GLY A . n A 1 240 ARG 240 422 422 ARG ARG A . n A 1 241 LEU 241 423 423 LEU LEU A . n A 1 242 PHE 242 424 424 PHE PHE A . n A 1 243 LEU 243 425 425 LEU LEU A . n A 1 244 GLY 244 426 426 GLY GLY A . n A 1 245 ASP 245 427 427 ASP ASP A . n A 1 246 PHE 246 428 428 PHE PHE A . n A 1 247 GLY 247 429 429 GLY GLY A . n A 1 248 THR 248 430 430 THR THR A . n A 1 249 TYR 249 431 431 TYR TYR A . n A 1 250 ARG 250 432 432 ARG ARG A . n A 1 251 ILE 251 433 433 ILE ILE A . n A 1 252 ASN 252 434 434 ASN ASN A . n A 1 253 ASN 253 435 435 ASN ASN A . n A 1 254 SER 254 436 436 SER SER A . n A 1 255 VAL 255 437 437 VAL VAL A . n A 1 256 GLY 256 438 438 GLY GLY A . n A 1 257 ARG 257 439 439 ARG ARG A . n A 1 258 ALA 258 440 ? ? ? A . n A 1 259 ILE 259 441 ? ? ? A . n A 1 260 GLY 260 442 442 GLY GLY A . n A 1 261 THR 261 443 443 THR THR A . n A 1 262 PRO 262 444 444 PRO PRO A . n A 1 263 GLY 263 445 445 GLY GLY A . n A 1 264 TYR 264 446 446 TYR TYR A . n A 1 265 GLU 265 447 447 GLU GLU A . n A 1 266 PRO 266 448 448 PRO PRO A . n A 1 267 PRO 267 449 449 PRO PRO A . n A 1 268 GLU 268 450 450 GLU GLU A . n A 1 269 ARG 269 451 451 ARG ARG A . n A 1 270 PRO 270 452 452 PRO PRO A . n A 1 271 PHE 271 453 ? ? ? A . n A 1 272 GLN 272 454 ? ? ? A . n A 1 273 ALA 273 455 ? ? ? A . n A 1 274 THR 274 456 ? ? ? A . n A 1 275 GLY 275 457 457 GLY GLY A . n A 1 276 ILE 276 458 458 ILE ILE A . n A 1 277 THR 277 459 459 THR THR A . n A 1 278 TYR 278 460 460 TYR TYR A . n A 1 279 THR 279 461 461 THR THR A . n A 1 280 PHE 280 462 462 PHE PHE A . n A 1 281 PRO 281 463 463 PRO PRO A . n A 1 282 THR 282 464 464 THR THR A . n A 1 283 ASP 283 465 465 ASP ASP A . n A 1 284 ALA 284 466 466 ALA ALA A . n A 1 285 TRP 285 467 467 TRP TRP A . n A 1 286 GLN 286 468 468 GLN GLN A . n A 1 287 LEU 287 469 469 LEU LEU A . n A 1 288 GLY 288 470 470 GLY GLY A . n A 1 289 ILE 289 471 471 ILE ILE A . n A 1 290 THR 290 472 472 THR THR A . n A 1 291 LEU 291 473 473 LEU LEU A . n A 1 292 TYR 292 474 474 TYR TYR A . n A 1 293 CYS 293 475 475 CYS CYS A . n A 1 294 ILE 294 476 476 ILE ILE A . n A 1 295 TRP 295 477 477 TRP TRP A . n A 1 296 CYS 296 478 478 CYS CYS A . n A 1 297 LYS 297 479 479 LYS LYS A . n A 1 298 GLU 298 480 480 GLU GLU A . n A 1 299 ARG 299 481 481 ARG ARG A . n A 1 300 PRO 300 482 482 PRO PRO A . n A 1 301 THR 301 483 483 THR THR A . n A 1 302 PRO 302 484 484 PRO PRO A . n A 1 303 ALA 303 485 485 ALA ALA A . n A 1 304 ASP 304 486 486 ASP ASP A . n A 1 305 GLY 305 487 487 GLY GLY A . n A 1 306 ILE 306 488 488 ILE ILE A . n A 1 307 TRP 307 489 489 TRP TRP A . n A 1 308 ASP 308 490 490 ASP ASP A . n A 1 309 TYR 309 491 491 TYR TYR A . n A 1 310 LEU 310 492 492 LEU LEU A . n A 1 311 HIS 311 493 493 HIS HIS A . n A 1 312 PHE 312 494 494 PHE PHE A . n A 1 313 ALA 313 495 495 ALA ALA A . n A 1 314 ASP 314 496 496 ASP ASP A . n A 1 315 CYS 315 497 497 CYS CYS A . n A 1 316 PRO 316 498 498 PRO PRO A . n A 1 317 SER 317 499 499 SER SER A . n A 1 318 THR 318 500 500 THR THR A . n A 1 319 PRO 319 501 501 PRO PRO A . n A 1 320 GLU 320 502 502 GLU GLU A . n A 1 321 LEU 321 503 503 LEU LEU A . n A 1 322 VAL 322 504 504 VAL VAL A . n A 1 323 GLN 323 505 505 GLN GLN A . n A 1 324 ASP 324 506 506 ASP ASP A . n A 1 325 LEU 325 507 507 LEU LEU A . n A 1 326 ILE 326 508 508 ILE ILE A . n A 1 327 ARG 327 509 509 ARG ARG A . n A 1 328 SER 328 510 510 SER SER A . n A 1 329 LEU 329 511 511 LEU LEU A . n A 1 330 LEU 330 512 512 LEU LEU A . n A 1 331 ASN 331 513 513 ASN ASN A . n A 1 332 ARG 332 514 514 ARG ARG A . n A 1 333 ASP 333 515 515 ASP ASP A . n A 1 334 PRO 334 516 516 PRO PRO A . n A 1 335 GLN 335 517 517 GLN GLN A . n A 1 336 LYS 336 518 518 LYS LYS A . n A 1 337 ARG 337 519 519 ARG ARG A . n A 1 338 MET 338 520 520 MET MET A . n A 1 339 LEU 339 521 521 LEU LEU A . n A 1 340 PRO 340 522 522 PRO PRO A . n A 1 341 LEU 341 523 523 LEU LEU A . n A 1 342 GLN 342 524 524 GLN GLN A . n A 1 343 ALA 343 525 525 ALA ALA A . n A 1 344 LEU 344 526 526 LEU LEU A . n A 1 345 GLU 345 527 527 GLU GLU A . n A 1 346 THR 346 528 528 THR THR A . n A 1 347 ALA 347 529 529 ALA ALA A . n A 1 348 ALA 348 530 530 ALA ALA A . n A 1 349 PHE 349 531 531 PHE PHE A . n A 1 350 LYS 350 532 532 LYS LYS A . n A 1 351 GLU 351 533 533 GLU GLU A . n A 1 352 MET 352 534 534 MET MET A . n A 1 353 ASP 353 535 535 ASP ASP A . n A 1 354 SER 354 536 536 SER SER A . n A 1 355 VAL 355 537 537 VAL VAL A . n A 1 356 VAL 356 538 538 VAL VAL A . n A 1 357 LYS 357 539 539 LYS LYS A . n A 1 358 GLY 358 540 540 GLY GLY A . n A 1 359 ALA 359 541 541 ALA ALA A . n A 1 360 ALA 360 542 542 ALA ALA A . n A 1 361 GLN 361 543 543 GLN GLN A . n A 1 362 ASN 362 544 544 ASN ASN A . n A 1 363 PHE 363 545 545 PHE PHE A . n A 1 364 GLU 364 546 546 GLU GLU A . n A 1 365 GLN 365 547 547 GLN GLN A . n A 1 366 GLN 366 548 548 GLN GLN A . n A 1 367 GLU 367 549 ? ? ? A . n A 1 368 HIS 368 550 ? ? ? A . n A 1 369 LEU 369 551 ? ? ? A . n A 1 370 HIS 370 552 ? ? ? A . n A 1 371 THR 371 553 ? ? ? A . n A 1 372 GLU 372 554 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP 1 601 1 ANP ANP A . D 4 MG 1 602 2 MG MG A . E 4 MG 1 603 3 MG MG A . F 5 HOH 1 701 1 HOH WAT A . F 5 HOH 2 702 2 HOH WAT A . F 5 HOH 3 703 3 HOH WAT A . F 5 HOH 4 704 4 HOH WAT A . F 5 HOH 5 705 5 HOH WAT A . F 5 HOH 6 706 6 HOH WAT A . F 5 HOH 7 707 7 HOH WAT A . F 5 HOH 8 708 8 HOH WAT A . # _pdbx_molecule_features.prd_id PRD_900003 _pdbx_molecule_features.name sucrose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900003 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 245 ? A ASP 427 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 OD1 ? A ASP 245 ? A ASP 427 ? 1_555 56.3 ? 2 OD2 ? A ASP 245 ? A ASP 427 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O3G ? C ANP . ? A ANP 601 ? 1_555 130.9 ? 3 OD1 ? A ASP 245 ? A ASP 427 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O3G ? C ANP . ? A ANP 601 ? 1_555 135.6 ? 4 OD2 ? A ASP 245 ? A ASP 427 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O1G ? C ANP . ? A ANP 601 ? 1_555 143.6 ? 5 OD1 ? A ASP 245 ? A ASP 427 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O1G ? C ANP . ? A ANP 601 ? 1_555 139.1 ? 6 O3G ? C ANP . ? A ANP 601 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O1G ? C ANP . ? A ANP 601 ? 1_555 66.9 ? 7 OD2 ? A ASP 245 ? A ASP 427 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O2B ? C ANP . ? A ANP 601 ? 1_555 123.1 ? 8 OD1 ? A ASP 245 ? A ASP 427 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O2B ? C ANP . ? A ANP 601 ? 1_555 67.9 ? 9 O3G ? C ANP . ? A ANP 601 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O2B ? C ANP . ? A ANP 601 ? 1_555 96.3 ? 10 O1G ? C ANP . ? A ANP 601 ? 1_555 MG ? E MG . ? A MG 603 ? 1_555 O2B ? C ANP . ? A ANP 601 ? 1_555 76.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-23 2 'Structure model' 1 1 2014-02-05 3 'Structure model' 1 2 2019-07-17 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Non-polymer description' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' atom_site 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' entity_name_com 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_struct_conn_angle 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_conn_type 19 4 'Structure model' struct_ref_seq_dif 20 4 'Structure model' struct_site 21 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' 4 4 'Structure model' '_atom_site.B_iso_or_equiv' 5 4 'Structure model' '_atom_site.Cartn_x' 6 4 'Structure model' '_atom_site.Cartn_y' 7 4 'Structure model' '_atom_site.Cartn_z' 8 4 'Structure model' '_atom_site.auth_asym_id' 9 4 'Structure model' '_atom_site.auth_atom_id' 10 4 'Structure model' '_atom_site.auth_comp_id' 11 4 'Structure model' '_atom_site.auth_seq_id' 12 4 'Structure model' '_atom_site.label_asym_id' 13 4 'Structure model' '_atom_site.label_atom_id' 14 4 'Structure model' '_atom_site.label_comp_id' 15 4 'Structure model' '_atom_site.label_entity_id' 16 4 'Structure model' '_atom_site.occupancy' 17 4 'Structure model' '_atom_site.type_symbol' 18 4 'Structure model' '_chem_comp.formula' 19 4 'Structure model' '_chem_comp.formula_weight' 20 4 'Structure model' '_chem_comp.id' 21 4 'Structure model' '_chem_comp.mon_nstd_flag' 22 4 'Structure model' '_chem_comp.name' 23 4 'Structure model' '_chem_comp.type' 24 4 'Structure model' '_entity.formula_weight' 25 4 'Structure model' '_entity.pdbx_description' 26 4 'Structure model' '_entity.pdbx_number_of_molecules' 27 4 'Structure model' '_entity.src_method' 28 4 'Structure model' '_entity.type' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 33 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 34 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 35 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 36 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 37 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 38 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 39 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 40 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 41 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 42 4 'Structure model' '_pdbx_struct_conn_angle.value' 43 4 'Structure model' '_struct_asym.entity_id' 44 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine: 1.7.1_743)' ? 1 CNS refinement . ? 2 SHARP phasing . ? 3 HKL-2000 'data collection' . ? 4 HKL-2000 'data reduction' . ? 5 HKL-2000 'data scaling' . ? 6 CNS phasing . ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 220 ? ? 29.37 49.57 2 1 SER A 302 ? ? -100.09 57.18 3 1 LYS A 311 ? ? -104.11 -66.02 4 1 GLU A 332 ? ? -55.83 -82.24 5 1 PRO A 335 ? ? -59.79 170.50 6 1 TYR A 352 ? ? -163.86 108.91 7 1 THR A 408 ? ? 63.02 -2.32 8 1 ASP A 409 ? ? -143.90 51.27 9 1 LYS A 479 ? ? 63.55 -73.11 10 1 ASP A 490 ? ? -154.87 -109.70 11 1 GLU A 527 ? ? -119.03 58.84 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 183 ? A GLY 1 2 1 Y 1 A ALA 184 ? A ALA 2 3 1 Y 1 A HIS 185 ? A HIS 3 4 1 Y 1 A MET 186 ? A MET 4 5 1 Y 1 A GLN 211 ? A GLN 29 6 1 Y 1 A ILE 212 ? A ILE 30 7 1 Y 1 A GLY 213 ? A GLY 31 8 1 Y 1 A GLN 214 ? A GLN 32 9 1 Y 1 A PRO 215 ? A PRO 33 10 1 Y 1 A GLN 216 ? A GLN 34 11 1 Y 1 A ALA 217 ? A ALA 35 12 1 Y 1 A ALA 440 ? A ALA 258 13 1 Y 1 A ILE 441 ? A ILE 259 14 1 Y 1 A PHE 453 ? A PHE 271 15 1 Y 1 A GLN 454 ? A GLN 272 16 1 Y 1 A ALA 455 ? A ALA 273 17 1 Y 1 A THR 456 ? A THR 274 18 1 Y 1 A GLU 549 ? A GLU 367 19 1 Y 1 A HIS 550 ? A HIS 368 20 1 Y 1 A LEU 551 ? A LEU 369 21 1 Y 1 A HIS 552 ? A HIS 370 22 1 Y 1 A THR 553 ? A THR 371 23 1 Y 1 A GLU 554 ? A GLU 372 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 D SUC 1 n B 2 FRU 2 B FRU 2 D SUC 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FRU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DFrufb FRU 'COMMON NAME' GMML 1.0 b-D-fructofuranose FRU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Fruf FRU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fru GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DFrufb2-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 FRU 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' ANP 4 'MAGNESIUM ION' MG 5 water HOH #