data_4JS1 # _entry.id 4JS1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JS1 RCSB RCSB078431 WWPDB D_1000078431 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4JS2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JS1 _pdbx_database_status.recvd_initial_deposition_date 2013-03-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuhn, B.' 1 'Benz, J.' 2 'Greif, M.' 3 'Engel, A.M.' 4 'Sobek, H.' 5 'Rudolph, M.G.' 6 # _citation.id primary _citation.title 'The structure of human alpha-2,6-sialyltransferase reveals the binding mode of complex glycans.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 69 _citation.page_first 1826 _citation.page_last 1838 _citation.year 2013 _citation.journal_id_ASTM ABCRE6 _citation.country US _citation.journal_id_ISSN 1399-0047 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23999306 _citation.pdbx_database_id_DOI 10.1107/S0907444913015412 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kuhn, B.' 1 ? primary 'Benz, J.' 2 ? primary 'Greif, M.' 3 ? primary 'Engel, A.M.' 4 ? primary 'Sobek, H.' 5 ? primary 'Rudolph, M.G.' 6 ? # _cell.entry_id 4JS1 _cell.length_a 65.292 _cell.length_b 65.292 _cell.length_c 162.232 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JS1 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Beta-galactoside alpha-2,6-sialyltransferase 1' 36821.906 1 2.4.99.1 ? 'catalytic domain, UNP RESIDUES 89-406' ? 2 branched man ;beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1641.490 1 ? ? ? ? 3 non-polymer syn '4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE' 243.217 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 water nat water 18.015 41 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Alpha 2,6-ST 1, B-cell antigen CD75, CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase 1, ST6Gal I, ST6GalI, Sialyltransferase 1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKYKVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGY LPKESIRTKAGPWGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTEKRFLKDSL YNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGI IIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC ; _entity_poly.pdbx_seq_one_letter_code_can ;PEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKYKVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGY LPKESIRTKAGPWGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTEKRFLKDSL YNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGI IIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLU n 1 3 ALA n 1 4 SER n 1 5 PHE n 1 6 GLN n 1 7 VAL n 1 8 TRP n 1 9 ASN n 1 10 LYS n 1 11 ASP n 1 12 SER n 1 13 SER n 1 14 SER n 1 15 LYS n 1 16 ASN n 1 17 LEU n 1 18 ILE n 1 19 PRO n 1 20 ARG n 1 21 LEU n 1 22 GLN n 1 23 LYS n 1 24 ILE n 1 25 TRP n 1 26 LYS n 1 27 ASN n 1 28 TYR n 1 29 LEU n 1 30 SER n 1 31 MET n 1 32 ASN n 1 33 LYS n 1 34 TYR n 1 35 LYS n 1 36 VAL n 1 37 SER n 1 38 TYR n 1 39 LYS n 1 40 GLY n 1 41 PRO n 1 42 GLY n 1 43 PRO n 1 44 GLY n 1 45 ILE n 1 46 LYS n 1 47 PHE n 1 48 SER n 1 49 ALA n 1 50 GLU n 1 51 ALA n 1 52 LEU n 1 53 ARG n 1 54 CYS n 1 55 HIS n 1 56 LEU n 1 57 ARG n 1 58 ASP n 1 59 HIS n 1 60 VAL n 1 61 ASN n 1 62 VAL n 1 63 SER n 1 64 MET n 1 65 VAL n 1 66 GLU n 1 67 VAL n 1 68 THR n 1 69 ASP n 1 70 PHE n 1 71 PRO n 1 72 PHE n 1 73 ASN n 1 74 THR n 1 75 SER n 1 76 GLU n 1 77 TRP n 1 78 GLU n 1 79 GLY n 1 80 TYR n 1 81 LEU n 1 82 PRO n 1 83 LYS n 1 84 GLU n 1 85 SER n 1 86 ILE n 1 87 ARG n 1 88 THR n 1 89 LYS n 1 90 ALA n 1 91 GLY n 1 92 PRO n 1 93 TRP n 1 94 GLY n 1 95 ARG n 1 96 CYS n 1 97 ALA n 1 98 VAL n 1 99 VAL n 1 100 SER n 1 101 SER n 1 102 ALA n 1 103 GLY n 1 104 SER n 1 105 LEU n 1 106 LYS n 1 107 SER n 1 108 SER n 1 109 GLN n 1 110 LEU n 1 111 GLY n 1 112 ARG n 1 113 GLU n 1 114 ILE n 1 115 ASP n 1 116 ASP n 1 117 HIS n 1 118 ASP n 1 119 ALA n 1 120 VAL n 1 121 LEU n 1 122 ARG n 1 123 PHE n 1 124 ASN n 1 125 GLY n 1 126 ALA n 1 127 PRO n 1 128 THR n 1 129 ALA n 1 130 ASN n 1 131 PHE n 1 132 GLN n 1 133 GLN n 1 134 ASP n 1 135 VAL n 1 136 GLY n 1 137 THR n 1 138 LYS n 1 139 THR n 1 140 THR n 1 141 ILE n 1 142 ARG n 1 143 LEU n 1 144 MET n 1 145 ASN n 1 146 SER n 1 147 GLN n 1 148 LEU n 1 149 VAL n 1 150 THR n 1 151 THR n 1 152 GLU n 1 153 LYS n 1 154 ARG n 1 155 PHE n 1 156 LEU n 1 157 LYS n 1 158 ASP n 1 159 SER n 1 160 LEU n 1 161 TYR n 1 162 ASN n 1 163 GLU n 1 164 GLY n 1 165 ILE n 1 166 LEU n 1 167 ILE n 1 168 VAL n 1 169 TRP n 1 170 ASP n 1 171 PRO n 1 172 SER n 1 173 VAL n 1 174 TYR n 1 175 HIS n 1 176 SER n 1 177 ASP n 1 178 ILE n 1 179 PRO n 1 180 LYS n 1 181 TRP n 1 182 TYR n 1 183 GLN n 1 184 ASN n 1 185 PRO n 1 186 ASP n 1 187 TYR n 1 188 ASN n 1 189 PHE n 1 190 PHE n 1 191 ASN n 1 192 ASN n 1 193 TYR n 1 194 LYS n 1 195 THR n 1 196 TYR n 1 197 ARG n 1 198 LYS n 1 199 LEU n 1 200 HIS n 1 201 PRO n 1 202 ASN n 1 203 GLN n 1 204 PRO n 1 205 PHE n 1 206 TYR n 1 207 ILE n 1 208 LEU n 1 209 LYS n 1 210 PRO n 1 211 GLN n 1 212 MET n 1 213 PRO n 1 214 TRP n 1 215 GLU n 1 216 LEU n 1 217 TRP n 1 218 ASP n 1 219 ILE n 1 220 LEU n 1 221 GLN n 1 222 GLU n 1 223 ILE n 1 224 SER n 1 225 PRO n 1 226 GLU n 1 227 GLU n 1 228 ILE n 1 229 GLN n 1 230 PRO n 1 231 ASN n 1 232 PRO n 1 233 PRO n 1 234 SER n 1 235 SER n 1 236 GLY n 1 237 MET n 1 238 LEU n 1 239 GLY n 1 240 ILE n 1 241 ILE n 1 242 ILE n 1 243 MET n 1 244 MET n 1 245 THR n 1 246 LEU n 1 247 CYS n 1 248 ASP n 1 249 GLN n 1 250 VAL n 1 251 ASP n 1 252 ILE n 1 253 TYR n 1 254 GLU n 1 255 PHE n 1 256 LEU n 1 257 PRO n 1 258 SER n 1 259 LYS n 1 260 ARG n 1 261 LYS n 1 262 THR n 1 263 ASP n 1 264 VAL n 1 265 CYS n 1 266 TYR n 1 267 TYR n 1 268 TYR n 1 269 GLN n 1 270 LYS n 1 271 PHE n 1 272 PHE n 1 273 ASP n 1 274 SER n 1 275 ALA n 1 276 CYS n 1 277 THR n 1 278 MET n 1 279 GLY n 1 280 ALA n 1 281 TYR n 1 282 HIS n 1 283 PRO n 1 284 LEU n 1 285 LEU n 1 286 TYR n 1 287 GLU n 1 288 LYS n 1 289 ASN n 1 290 LEU n 1 291 VAL n 1 292 LYS n 1 293 HIS n 1 294 LEU n 1 295 ASN n 1 296 GLN n 1 297 GLY n 1 298 THR n 1 299 ASP n 1 300 GLU n 1 301 ASP n 1 302 ILE n 1 303 TYR n 1 304 LEU n 1 305 LEU n 1 306 GLY n 1 307 LYS n 1 308 ALA n 1 309 THR n 1 310 LEU n 1 311 PRO n 1 312 GLY n 1 313 PHE n 1 314 ARG n 1 315 THR n 1 316 ILE n 1 317 HIS n 1 318 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ST6GAL1, SIAT1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'HEK 293' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SIAT1_HUMAN _struct_ref.pdbx_db_accession P15907 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKYKVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGY LPKESIRTKAGPWGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTEKRFLKDSL YNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPPSSGMLGI IIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC ; _struct_ref.pdbx_align_begin 89 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JS1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 318 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15907 _struct_ref_seq.db_align_beg 89 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 406 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 89 _struct_ref_seq.pdbx_auth_seq_align_end 406 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CTN non-polymer . '4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE' CYTIDINE 'C9 H13 N3 O5' 243.217 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4JS1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details '0.1M MES/NaOH, pH 5.8, 20% PEG 2000 MME, 0.01M CaCl2, 0.01M MgCl2, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-11-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 4JS1 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 46.4 _reflns.d_resolution_high 2.09 _reflns.number_obs 22378 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.09 _reflns_shell.d_res_low 2.16 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.pdbx_redundancy 10.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2292 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JS1 _refine.ls_number_reflns_obs 22159 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.387 _refine.ls_d_res_high 2.090 _refine.ls_percent_reflns_obs 95.85 _refine.ls_R_factor_obs 0.1953 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1934 _refine.ls_R_factor_R_free 0.2282 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.16 _refine.ls_number_reflns_R_free 1143 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 34.08 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2594 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 133 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 2768 _refine_hist.d_res_high 2.090 _refine_hist.d_res_low 46.387 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.009 ? ? 2816 ? 'X-RAY DIFFRACTION' f_angle_d 1.252 ? ? 3835 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 25.993 ? ? 1087 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.081 ? ? 428 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 472 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' 8 2.0901 2.1852 2712 0.3319 99.00 0.3733 . . 128 . . 2712 . 'X-RAY DIFFRACTION' 8 2.1852 2.3005 1973 0.3417 72.00 0.4374 . . 104 . . 1973 . 'X-RAY DIFFRACTION' 8 2.3005 2.4446 2707 0.2848 99.00 0.3579 . . 145 . . 2707 . 'X-RAY DIFFRACTION' 8 2.4446 2.6333 2741 0.2750 99.00 0.3203 . . 136 . . 2741 . 'X-RAY DIFFRACTION' 8 2.6333 2.8983 2688 0.2446 99.00 0.2962 . . 161 . . 2688 . 'X-RAY DIFFRACTION' 8 2.8983 3.3176 2751 0.2264 100.00 0.3006 . . 145 . . 2751 . 'X-RAY DIFFRACTION' 8 3.3176 4.1794 2681 0.1783 99.00 0.2185 . . 169 . . 2681 . 'X-RAY DIFFRACTION' 8 4.1794 46.3980 2763 0.1415 100.00 0.1562 . . 155 . . 2763 . # _struct.entry_id 4JS1 _struct.title 'crystal structure of human Beta-galactoside alpha-2,6-sialyltransferase 1 in complex with cytidine and phosphate' _struct.pdbx_descriptor 'Beta-galactoside alpha-2,6-sialyltransferase 1 (E.C.2.4.99.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JS1 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Rossmann, GT-A, sialyltransferase, glycoprotein, sialylation, endoplasmatic reticulum, golgi, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 13 ? LEU A 17 ? SER A 101 LEU A 105 5 ? 5 HELX_P HELX_P2 2 ILE A 18 ? MET A 31 ? ILE A 106 MET A 119 1 ? 14 HELX_P HELX_P3 3 SER A 48 ? VAL A 60 ? SER A 136 VAL A 148 1 ? 13 HELX_P HELX_P4 4 THR A 74 ? GLU A 78 ? THR A 162 GLU A 166 5 ? 5 HELX_P HELX_P5 5 SER A 85 ? ALA A 90 ? SER A 173 ALA A 178 1 ? 6 HELX_P HELX_P6 6 ALA A 102 ? LYS A 106 ? ALA A 190 LYS A 194 5 ? 5 HELX_P HELX_P7 7 LEU A 110 ? ASP A 115 ? LEU A 198 ASP A 203 1 ? 6 HELX_P HELX_P8 8 PHE A 131 ? GLY A 136 ? PHE A 219 GLY A 224 1 ? 6 HELX_P HELX_P9 9 SER A 146 ? GLU A 152 ? SER A 234 GLU A 240 1 ? 7 HELX_P HELX_P10 10 LYS A 153 ? LYS A 157 ? LYS A 241 LYS A 245 5 ? 5 HELX_P HELX_P11 11 ASP A 158 ? GLU A 163 ? ASP A 246 GLU A 251 5 ? 6 HELX_P HELX_P12 12 ASP A 177 ? ASN A 184 ? ASP A 265 ASN A 272 1 ? 8 HELX_P HELX_P13 13 PHE A 189 ? HIS A 200 ? PHE A 277 HIS A 288 1 ? 12 HELX_P HELX_P14 14 PRO A 210 ? SER A 224 ? PRO A 298 SER A 312 1 ? 15 HELX_P HELX_P15 15 SER A 234 ? LEU A 246 ? SER A 322 LEU A 334 1 ? 13 HELX_P HELX_P16 16 SER A 274 ? GLY A 279 ? SER A 362 GLY A 367 1 ? 6 HELX_P HELX_P17 17 PRO A 283 ? ASN A 295 ? PRO A 371 ASN A 383 1 ? 13 HELX_P HELX_P18 18 THR A 298 ? GLY A 306 ? THR A 386 GLY A 394 1 ? 9 HELX_P HELX_P19 19 PHE A 313 ? ILE A 316 ? PHE A 401 ILE A 404 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 96 SG ? ? ? 1_555 A CYS 247 SG ? ? A CYS 184 A CYS 335 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? A CYS 265 SG ? ? ? 1_555 A CYS 276 SG ? ? A CYS 353 A CYS 364 1_555 ? ? ? ? ? ? ? 2.043 ? ? covale1 covale one ? A ASN 61 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 149 B NAG 1 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale4 covale one ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale5 covale one ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 7 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale6 covale one ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 4 B NAG 5 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale7 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 5 B GAL 6 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale8 covale one ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 7 B NAG 8 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale9 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 8 B GAL 9 1_555 ? ? ? ? ? ? ? 1.448 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 70 A . ? PHE 158 A PRO 71 A ? PRO 159 A 1 5.26 2 GLY 91 A . ? GLY 179 A PRO 92 A ? PRO 180 A 1 7.24 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 205 ? ILE A 207 ? PHE A 293 ILE A 295 A 2 ILE A 165 ? TRP A 169 ? ILE A 253 TRP A 257 A 3 ILE A 141 ? ASN A 145 ? ILE A 229 ASN A 233 A 4 ALA A 119 ? PHE A 123 ? ALA A 207 PHE A 211 A 5 TRP A 93 ? VAL A 99 ? TRP A 181 VAL A 187 A 6 CYS A 247 ? TYR A 253 ? CYS A 335 TYR A 341 A 7 LYS A 307 ? PRO A 311 ? LYS A 395 PRO A 399 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 206 ? O TYR A 294 N LEU A 166 ? N LEU A 254 A 2 3 O ILE A 165 ? O ILE A 253 N ARG A 142 ? N ARG A 230 A 3 4 O LEU A 143 ? O LEU A 231 N ARG A 122 ? N ARG A 210 A 4 5 O LEU A 121 ? O LEU A 209 N VAL A 99 ? N VAL A 187 A 5 6 N CYS A 96 ? N CYS A 184 O ASP A 251 ? O ASP A 339 A 6 7 N VAL A 250 ? N VAL A 338 O LEU A 310 ? O LEU A 398 # _database_PDB_matrix.entry_id 4JS1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JS1 _atom_sites.fract_transf_matrix[1][1] 0.015316 _atom_sites.fract_transf_matrix[1][2] 0.008843 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017685 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006164 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 89 89 PRO PRO A . n A 1 2 GLU 2 90 90 GLU GLU A . n A 1 3 ALA 3 91 91 ALA ALA A . n A 1 4 SER 4 92 92 SER SER A . n A 1 5 PHE 5 93 93 PHE PHE A . n A 1 6 GLN 6 94 94 GLN GLN A . n A 1 7 VAL 7 95 95 VAL VAL A . n A 1 8 TRP 8 96 96 TRP TRP A . n A 1 9 ASN 9 97 97 ASN ASN A . n A 1 10 LYS 10 98 98 LYS LYS A . n A 1 11 ASP 11 99 99 ASP ASP A . n A 1 12 SER 12 100 100 SER SER A . n A 1 13 SER 13 101 101 SER SER A . n A 1 14 SER 14 102 102 SER SER A . n A 1 15 LYS 15 103 103 LYS LYS A . n A 1 16 ASN 16 104 104 ASN ASN A . n A 1 17 LEU 17 105 105 LEU LEU A . n A 1 18 ILE 18 106 106 ILE ILE A . n A 1 19 PRO 19 107 107 PRO PRO A . n A 1 20 ARG 20 108 108 ARG ARG A . n A 1 21 LEU 21 109 109 LEU LEU A . n A 1 22 GLN 22 110 110 GLN GLN A . n A 1 23 LYS 23 111 111 LYS LYS A . n A 1 24 ILE 24 112 112 ILE ILE A . n A 1 25 TRP 25 113 113 TRP TRP A . n A 1 26 LYS 26 114 114 LYS LYS A . n A 1 27 ASN 27 115 115 ASN ASN A . n A 1 28 TYR 28 116 116 TYR TYR A . n A 1 29 LEU 29 117 117 LEU LEU A . n A 1 30 SER 30 118 118 SER SER A . n A 1 31 MET 31 119 119 MET MET A . n A 1 32 ASN 32 120 120 ASN ASN A . n A 1 33 LYS 33 121 121 LYS LYS A . n A 1 34 TYR 34 122 122 TYR TYR A . n A 1 35 LYS 35 123 123 LYS LYS A . n A 1 36 VAL 36 124 124 VAL VAL A . n A 1 37 SER 37 125 125 SER SER A . n A 1 38 TYR 38 126 126 TYR TYR A . n A 1 39 LYS 39 127 127 LYS LYS A . n A 1 40 GLY 40 128 128 GLY GLY A . n A 1 41 PRO 41 129 129 PRO PRO A . n A 1 42 GLY 42 130 130 GLY GLY A . n A 1 43 PRO 43 131 131 PRO PRO A . n A 1 44 GLY 44 132 132 GLY GLY A . n A 1 45 ILE 45 133 133 ILE ILE A . n A 1 46 LYS 46 134 134 LYS LYS A . n A 1 47 PHE 47 135 135 PHE PHE A . n A 1 48 SER 48 136 136 SER SER A . n A 1 49 ALA 49 137 137 ALA ALA A . n A 1 50 GLU 50 138 138 GLU GLU A . n A 1 51 ALA 51 139 139 ALA ALA A . n A 1 52 LEU 52 140 140 LEU LEU A . n A 1 53 ARG 53 141 141 ARG ARG A . n A 1 54 CYS 54 142 142 CYS CYS A . n A 1 55 HIS 55 143 143 HIS HIS A . n A 1 56 LEU 56 144 144 LEU LEU A . n A 1 57 ARG 57 145 145 ARG ARG A . n A 1 58 ASP 58 146 146 ASP ASP A . n A 1 59 HIS 59 147 147 HIS HIS A . n A 1 60 VAL 60 148 148 VAL VAL A . n A 1 61 ASN 61 149 149 ASN ASN A . n A 1 62 VAL 62 150 150 VAL VAL A . n A 1 63 SER 63 151 151 SER SER A . n A 1 64 MET 64 152 152 MET MET A . n A 1 65 VAL 65 153 153 VAL VAL A . n A 1 66 GLU 66 154 154 GLU GLU A . n A 1 67 VAL 67 155 155 VAL VAL A . n A 1 68 THR 68 156 156 THR THR A . n A 1 69 ASP 69 157 157 ASP ASP A . n A 1 70 PHE 70 158 158 PHE PHE A . n A 1 71 PRO 71 159 159 PRO PRO A . n A 1 72 PHE 72 160 160 PHE PHE A . n A 1 73 ASN 73 161 161 ASN ASN A . n A 1 74 THR 74 162 162 THR THR A . n A 1 75 SER 75 163 163 SER SER A . n A 1 76 GLU 76 164 164 GLU GLU A . n A 1 77 TRP 77 165 165 TRP TRP A . n A 1 78 GLU 78 166 166 GLU GLU A . n A 1 79 GLY 79 167 167 GLY GLY A . n A 1 80 TYR 80 168 168 TYR TYR A . n A 1 81 LEU 81 169 169 LEU LEU A . n A 1 82 PRO 82 170 170 PRO PRO A . n A 1 83 LYS 83 171 171 LYS LYS A . n A 1 84 GLU 84 172 172 GLU GLU A . n A 1 85 SER 85 173 173 SER SER A . n A 1 86 ILE 86 174 174 ILE ILE A . n A 1 87 ARG 87 175 175 ARG ARG A . n A 1 88 THR 88 176 176 THR THR A . n A 1 89 LYS 89 177 177 LYS LYS A . n A 1 90 ALA 90 178 178 ALA ALA A . n A 1 91 GLY 91 179 179 GLY GLY A . n A 1 92 PRO 92 180 180 PRO PRO A . n A 1 93 TRP 93 181 181 TRP TRP A . n A 1 94 GLY 94 182 182 GLY GLY A . n A 1 95 ARG 95 183 183 ARG ARG A . n A 1 96 CYS 96 184 184 CYS CYS A . n A 1 97 ALA 97 185 185 ALA ALA A . n A 1 98 VAL 98 186 186 VAL VAL A . n A 1 99 VAL 99 187 187 VAL VAL A . n A 1 100 SER 100 188 188 SER SER A . n A 1 101 SER 101 189 189 SER SER A . n A 1 102 ALA 102 190 190 ALA ALA A . n A 1 103 GLY 103 191 191 GLY GLY A . n A 1 104 SER 104 192 192 SER SER A . n A 1 105 LEU 105 193 193 LEU LEU A . n A 1 106 LYS 106 194 194 LYS LYS A . n A 1 107 SER 107 195 195 SER SER A . n A 1 108 SER 108 196 196 SER SER A . n A 1 109 GLN 109 197 197 GLN GLN A . n A 1 110 LEU 110 198 198 LEU LEU A . n A 1 111 GLY 111 199 199 GLY GLY A . n A 1 112 ARG 112 200 200 ARG ARG A . n A 1 113 GLU 113 201 201 GLU GLU A . n A 1 114 ILE 114 202 202 ILE ILE A . n A 1 115 ASP 115 203 203 ASP ASP A . n A 1 116 ASP 116 204 204 ASP ASP A . n A 1 117 HIS 117 205 205 HIS HIS A . n A 1 118 ASP 118 206 206 ASP ASP A . n A 1 119 ALA 119 207 207 ALA ALA A . n A 1 120 VAL 120 208 208 VAL VAL A . n A 1 121 LEU 121 209 209 LEU LEU A . n A 1 122 ARG 122 210 210 ARG ARG A . n A 1 123 PHE 123 211 211 PHE PHE A . n A 1 124 ASN 124 212 212 ASN ASN A . n A 1 125 GLY 125 213 213 GLY GLY A . n A 1 126 ALA 126 214 214 ALA ALA A . n A 1 127 PRO 127 215 215 PRO PRO A . n A 1 128 THR 128 216 216 THR THR A . n A 1 129 ALA 129 217 217 ALA ALA A . n A 1 130 ASN 130 218 218 ASN ASN A . n A 1 131 PHE 131 219 219 PHE PHE A . n A 1 132 GLN 132 220 220 GLN GLN A . n A 1 133 GLN 133 221 221 GLN GLN A . n A 1 134 ASP 134 222 222 ASP ASP A . n A 1 135 VAL 135 223 223 VAL VAL A . n A 1 136 GLY 136 224 224 GLY GLY A . n A 1 137 THR 137 225 225 THR THR A . n A 1 138 LYS 138 226 226 LYS LYS A . n A 1 139 THR 139 227 227 THR THR A . n A 1 140 THR 140 228 228 THR THR A . n A 1 141 ILE 141 229 229 ILE ILE A . n A 1 142 ARG 142 230 230 ARG ARG A . n A 1 143 LEU 143 231 231 LEU LEU A . n A 1 144 MET 144 232 232 MET MET A . n A 1 145 ASN 145 233 233 ASN ASN A . n A 1 146 SER 146 234 234 SER SER A . n A 1 147 GLN 147 235 235 GLN GLN A . n A 1 148 LEU 148 236 236 LEU LEU A . n A 1 149 VAL 149 237 237 VAL VAL A . n A 1 150 THR 150 238 238 THR THR A . n A 1 151 THR 151 239 239 THR THR A . n A 1 152 GLU 152 240 240 GLU GLU A . n A 1 153 LYS 153 241 241 LYS LYS A . n A 1 154 ARG 154 242 242 ARG ARG A . n A 1 155 PHE 155 243 243 PHE PHE A . n A 1 156 LEU 156 244 244 LEU LEU A . n A 1 157 LYS 157 245 245 LYS LYS A . n A 1 158 ASP 158 246 246 ASP ASP A . n A 1 159 SER 159 247 247 SER SER A . n A 1 160 LEU 160 248 248 LEU LEU A . n A 1 161 TYR 161 249 249 TYR TYR A . n A 1 162 ASN 162 250 250 ASN ASN A . n A 1 163 GLU 163 251 251 GLU GLU A . n A 1 164 GLY 164 252 252 GLY GLY A . n A 1 165 ILE 165 253 253 ILE ILE A . n A 1 166 LEU 166 254 254 LEU LEU A . n A 1 167 ILE 167 255 255 ILE ILE A . n A 1 168 VAL 168 256 256 VAL VAL A . n A 1 169 TRP 169 257 257 TRP TRP A . n A 1 170 ASP 170 258 258 ASP ASP A . n A 1 171 PRO 171 259 259 PRO PRO A . n A 1 172 SER 172 260 260 SER SER A . n A 1 173 VAL 173 261 261 VAL VAL A . n A 1 174 TYR 174 262 262 TYR TYR A . n A 1 175 HIS 175 263 263 HIS HIS A . n A 1 176 SER 176 264 264 SER SER A . n A 1 177 ASP 177 265 265 ASP ASP A . n A 1 178 ILE 178 266 266 ILE ILE A . n A 1 179 PRO 179 267 267 PRO PRO A . n A 1 180 LYS 180 268 268 LYS LYS A . n A 1 181 TRP 181 269 269 TRP TRP A . n A 1 182 TYR 182 270 270 TYR TYR A . n A 1 183 GLN 183 271 271 GLN GLN A . n A 1 184 ASN 184 272 272 ASN ASN A . n A 1 185 PRO 185 273 273 PRO PRO A . n A 1 186 ASP 186 274 274 ASP ASP A . n A 1 187 TYR 187 275 275 TYR TYR A . n A 1 188 ASN 188 276 276 ASN ASN A . n A 1 189 PHE 189 277 277 PHE PHE A . n A 1 190 PHE 190 278 278 PHE PHE A . n A 1 191 ASN 191 279 279 ASN ASN A . n A 1 192 ASN 192 280 280 ASN ASN A . n A 1 193 TYR 193 281 281 TYR TYR A . n A 1 194 LYS 194 282 282 LYS LYS A . n A 1 195 THR 195 283 283 THR THR A . n A 1 196 TYR 196 284 284 TYR TYR A . n A 1 197 ARG 197 285 285 ARG ARG A . n A 1 198 LYS 198 286 286 LYS LYS A . n A 1 199 LEU 199 287 287 LEU LEU A . n A 1 200 HIS 200 288 288 HIS HIS A . n A 1 201 PRO 201 289 289 PRO PRO A . n A 1 202 ASN 202 290 290 ASN ASN A . n A 1 203 GLN 203 291 291 GLN GLN A . n A 1 204 PRO 204 292 292 PRO PRO A . n A 1 205 PHE 205 293 293 PHE PHE A . n A 1 206 TYR 206 294 294 TYR TYR A . n A 1 207 ILE 207 295 295 ILE ILE A . n A 1 208 LEU 208 296 296 LEU LEU A . n A 1 209 LYS 209 297 297 LYS LYS A . n A 1 210 PRO 210 298 298 PRO PRO A . n A 1 211 GLN 211 299 299 GLN GLN A . n A 1 212 MET 212 300 300 MET MET A . n A 1 213 PRO 213 301 301 PRO PRO A . n A 1 214 TRP 214 302 302 TRP TRP A . n A 1 215 GLU 215 303 303 GLU GLU A . n A 1 216 LEU 216 304 304 LEU LEU A . n A 1 217 TRP 217 305 305 TRP TRP A . n A 1 218 ASP 218 306 306 ASP ASP A . n A 1 219 ILE 219 307 307 ILE ILE A . n A 1 220 LEU 220 308 308 LEU LEU A . n A 1 221 GLN 221 309 309 GLN GLN A . n A 1 222 GLU 222 310 310 GLU GLU A . n A 1 223 ILE 223 311 311 ILE ILE A . n A 1 224 SER 224 312 312 SER SER A . n A 1 225 PRO 225 313 313 PRO PRO A . n A 1 226 GLU 226 314 314 GLU GLU A . n A 1 227 GLU 227 315 315 GLU GLU A . n A 1 228 ILE 228 316 316 ILE ILE A . n A 1 229 GLN 229 317 317 GLN GLN A . n A 1 230 PRO 230 318 318 PRO PRO A . n A 1 231 ASN 231 319 319 ASN ASN A . n A 1 232 PRO 232 320 320 PRO PRO A . n A 1 233 PRO 233 321 321 PRO PRO A . n A 1 234 SER 234 322 322 SER SER A . n A 1 235 SER 235 323 323 SER SER A . n A 1 236 GLY 236 324 324 GLY GLY A . n A 1 237 MET 237 325 325 MET MET A . n A 1 238 LEU 238 326 326 LEU LEU A . n A 1 239 GLY 239 327 327 GLY GLY A . n A 1 240 ILE 240 328 328 ILE ILE A . n A 1 241 ILE 241 329 329 ILE ILE A . n A 1 242 ILE 242 330 330 ILE ILE A . n A 1 243 MET 243 331 331 MET MET A . n A 1 244 MET 244 332 332 MET MET A . n A 1 245 THR 245 333 333 THR THR A . n A 1 246 LEU 246 334 334 LEU LEU A . n A 1 247 CYS 247 335 335 CYS CYS A . n A 1 248 ASP 248 336 336 ASP ASP A . n A 1 249 GLN 249 337 337 GLN GLN A . n A 1 250 VAL 250 338 338 VAL VAL A . n A 1 251 ASP 251 339 339 ASP ASP A . n A 1 252 ILE 252 340 340 ILE ILE A . n A 1 253 TYR 253 341 341 TYR TYR A . n A 1 254 GLU 254 342 342 GLU GLU A . n A 1 255 PHE 255 343 343 PHE PHE A . n A 1 256 LEU 256 344 344 LEU LEU A . n A 1 257 PRO 257 345 345 PRO PRO A . n A 1 258 SER 258 346 346 SER SER A . n A 1 259 LYS 259 347 347 LYS LYS A . n A 1 260 ARG 260 348 348 ARG ARG A . n A 1 261 LYS 261 349 349 LYS LYS A . n A 1 262 THR 262 350 350 THR THR A . n A 1 263 ASP 263 351 351 ASP ASP A . n A 1 264 VAL 264 352 352 VAL VAL A . n A 1 265 CYS 265 353 353 CYS CYS A . n A 1 266 TYR 266 354 354 TYR TYR A . n A 1 267 TYR 267 355 355 TYR TYR A . n A 1 268 TYR 268 356 356 TYR TYR A . n A 1 269 GLN 269 357 357 GLN GLN A . n A 1 270 LYS 270 358 358 LYS LYS A . n A 1 271 PHE 271 359 359 PHE PHE A . n A 1 272 PHE 272 360 360 PHE PHE A . n A 1 273 ASP 273 361 361 ASP ASP A . n A 1 274 SER 274 362 362 SER SER A . n A 1 275 ALA 275 363 363 ALA ALA A . n A 1 276 CYS 276 364 364 CYS CYS A . n A 1 277 THR 277 365 365 THR THR A . n A 1 278 MET 278 366 366 MET MET A . n A 1 279 GLY 279 367 367 GLY GLY A . n A 1 280 ALA 280 368 368 ALA ALA A . n A 1 281 TYR 281 369 369 TYR TYR A . n A 1 282 HIS 282 370 370 HIS HIS A . n A 1 283 PRO 283 371 371 PRO PRO A . n A 1 284 LEU 284 372 372 LEU LEU A . n A 1 285 LEU 285 373 373 LEU LEU A . n A 1 286 TYR 286 374 374 TYR TYR A . n A 1 287 GLU 287 375 375 GLU GLU A . n A 1 288 LYS 288 376 376 LYS LYS A . n A 1 289 ASN 289 377 377 ASN ASN A . n A 1 290 LEU 290 378 378 LEU LEU A . n A 1 291 VAL 291 379 379 VAL VAL A . n A 1 292 LYS 292 380 380 LYS LYS A . n A 1 293 HIS 293 381 381 HIS HIS A . n A 1 294 LEU 294 382 382 LEU LEU A . n A 1 295 ASN 295 383 383 ASN ASN A . n A 1 296 GLN 296 384 384 GLN GLN A . n A 1 297 GLY 297 385 385 GLY GLY A . n A 1 298 THR 298 386 386 THR THR A . n A 1 299 ASP 299 387 387 ASP ASP A . n A 1 300 GLU 300 388 388 GLU GLU A . n A 1 301 ASP 301 389 389 ASP ASP A . n A 1 302 ILE 302 390 390 ILE ILE A . n A 1 303 TYR 303 391 391 TYR TYR A . n A 1 304 LEU 304 392 392 LEU LEU A . n A 1 305 LEU 305 393 393 LEU LEU A . n A 1 306 GLY 306 394 394 GLY GLY A . n A 1 307 LYS 307 395 395 LYS LYS A . n A 1 308 ALA 308 396 396 ALA ALA A . n A 1 309 THR 309 397 397 THR THR A . n A 1 310 LEU 310 398 398 LEU LEU A . n A 1 311 PRO 311 399 399 PRO PRO A . n A 1 312 GLY 312 400 400 GLY GLY A . n A 1 313 PHE 313 401 401 PHE PHE A . n A 1 314 ARG 314 402 402 ARG ARG A . n A 1 315 THR 315 403 403 THR THR A . n A 1 316 ILE 316 404 404 ILE ILE A . n A 1 317 HIS 317 405 405 HIS HIS A . n A 1 318 CYS 318 406 406 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CTN 1 510 500 CTN C A . D 4 PO4 1 511 501 PO4 PO4 A . E 5 HOH 1 601 1 HOH HOH A . E 5 HOH 2 602 2 HOH HOH A . E 5 HOH 3 603 3 HOH HOH A . E 5 HOH 4 604 4 HOH HOH A . E 5 HOH 5 605 5 HOH HOH A . E 5 HOH 6 606 6 HOH HOH A . E 5 HOH 7 607 7 HOH HOH A . E 5 HOH 8 608 8 HOH HOH A . E 5 HOH 9 609 9 HOH HOH A . E 5 HOH 10 610 10 HOH HOH A . E 5 HOH 11 611 11 HOH HOH A . E 5 HOH 12 612 13 HOH HOH A . E 5 HOH 13 613 14 HOH HOH A . E 5 HOH 14 614 15 HOH HOH A . E 5 HOH 15 615 16 HOH HOH A . E 5 HOH 16 616 17 HOH HOH A . E 5 HOH 17 617 18 HOH HOH A . E 5 HOH 18 618 19 HOH HOH A . E 5 HOH 19 619 20 HOH HOH A . E 5 HOH 20 620 21 HOH HOH A . E 5 HOH 21 621 22 HOH HOH A . E 5 HOH 22 622 23 HOH HOH A . E 5 HOH 23 623 24 HOH HOH A . E 5 HOH 24 624 25 HOH HOH A . E 5 HOH 25 625 26 HOH HOH A . E 5 HOH 26 626 27 HOH HOH A . E 5 HOH 27 627 28 HOH HOH A . E 5 HOH 28 628 29 HOH HOH A . E 5 HOH 29 629 30 HOH HOH A . E 5 HOH 30 630 32 HOH HOH A . E 5 HOH 31 631 33 HOH HOH A . E 5 HOH 32 632 34 HOH HOH A . E 5 HOH 33 633 35 HOH HOH A . E 5 HOH 34 634 36 HOH HOH A . E 5 HOH 35 635 37 HOH HOH A . E 5 HOH 36 636 38 HOH HOH A . E 5 HOH 37 637 39 HOH HOH A . E 5 HOH 38 638 40 HOH HOH A . E 5 HOH 39 639 41 HOH HOH A . E 5 HOH 40 640 42 HOH HOH A . E 5 HOH 41 641 43 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 61 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 149 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-31 2 'Structure model' 1 1 2013-08-28 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2019-12-18 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation 3 4 'Structure model' struct_conn 4 5 'Structure model' atom_site 5 5 'Structure model' atom_site_anisotrop 6 5 'Structure model' chem_comp 7 5 'Structure model' entity 8 5 'Structure model' pdbx_branch_scheme 9 5 'Structure model' pdbx_chem_comp_identifier 10 5 'Structure model' pdbx_entity_branch 11 5 'Structure model' pdbx_entity_branch_descriptor 12 5 'Structure model' pdbx_entity_branch_link 13 5 'Structure model' pdbx_entity_branch_list 14 5 'Structure model' pdbx_entity_nonpoly 15 5 'Structure model' pdbx_nonpoly_scheme 16 5 'Structure model' pdbx_struct_assembly_gen 17 5 'Structure model' pdbx_validate_close_contact 18 5 'Structure model' struct_asym 19 5 'Structure model' struct_conn 20 5 'Structure model' struct_site 21 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.country' 2 4 'Structure model' '_citation.journal_id_CSD' 3 4 'Structure model' '_citation.journal_id_ISSN' 4 4 'Structure model' '_citation.pdbx_database_id_PubMed' 5 4 'Structure model' '_citation.title' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_atom_site.auth_asym_id' 8 5 'Structure model' '_atom_site.auth_seq_id' 9 5 'Structure model' '_atom_site.label_asym_id' 10 5 'Structure model' '_atom_site.label_entity_id' 11 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 12 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 13 5 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 14 5 'Structure model' '_chem_comp.name' 15 5 'Structure model' '_chem_comp.type' 16 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 5 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 18 5 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 19 5 'Structure model' '_struct_conn.pdbx_dist_value' 20 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 5 'Structure model' '_struct_conn.pdbx_role' 22 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.3395 44.8877 32.6420 0.8266 0.3110 0.3112 0.0185 0.0431 -0.0073 3.6997 4.0448 8.6045 -1.0168 -1.6255 3.1222 -0.2335 -0.0938 -0.1270 1.0391 0.2734 -0.0865 1.4709 0.2644 -0.0626 'X-RAY DIFFRACTION' 2 ? refined -7.8249 25.7520 9.7658 0.9100 1.1090 0.9239 -0.1058 -0.2386 -0.1895 1.2595 0.4733 1.2789 -0.3638 -1.0275 -0.0903 1.6800 -0.3088 -0.9208 0.2395 0.0680 -1.0318 1.4399 1.0577 -1.2164 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 89 A 406 'CHAIN A AND (RESID 89:406 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 501 A 509 'CHAIN A AND (RESID 501:509 )' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHARP phasing . ? 1 PHENIX refinement '(phenix.refine: dev_1327)' ? 2 XDS 'data reduction' . ? 3 SADABS 'data scaling' . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 149 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C2 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 NAG _pdbx_validate_close_contact.auth_seq_id_2 1 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 142 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 142 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 142 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 122.38 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 8.18 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 129 ? ? -34.20 -26.95 2 1 ASN A 212 ? ? 46.02 -121.59 3 1 ASN A 218 ? ? 77.39 -2.14 4 1 PRO A 318 ? ? -81.46 46.30 5 1 LYS A 349 ? ? -34.85 123.82 6 1 ASP A 361 ? ? -163.94 111.57 7 1 ALA A 368 ? ? -139.59 -78.99 8 1 PRO A 371 ? ? -78.43 46.38 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 450 n B 2 NAG 2 B NAG 2 A NAG 451 n B 2 BMA 3 B BMA 3 A BMA 452 n B 2 MAN 4 B MAN 4 A MAN 453 n B 2 NAG 5 B NAG 5 A NAG 454 n B 2 GAL 6 B GAL 6 A GAL 455 n B 2 MAN 7 B MAN 7 A MAN 456 n B 2 NAG 8 B NAG 8 A NAG 457 n B 2 GAL 9 B GAL 9 A GAL 458 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 ;WURCS=2.0/4,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-3-1-4/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1 ; WURCS PDB2Glycan 1.1.0 3 2 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 NAG C1 O1 4 MAN O2 HO2 sing ? 5 2 6 GAL C1 O1 5 NAG O4 HO4 sing ? 6 2 7 MAN C1 O1 3 BMA O6 HO6 sing ? 7 2 8 NAG C1 O1 7 MAN O2 HO2 sing ? 8 2 9 GAL C1 O1 8 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 NAG 5 n 2 GAL 6 n 2 MAN 7 n 2 NAG 8 n 2 GAL 9 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE' CTN 4 'PHOSPHATE ION' PO4 5 water HOH #