data_4K08 # _entry.id 4K08 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4K08 RCSB RCSB078726 WWPDB D_1000078726 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id MCSG-APC100261 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4K08 _pdbx_database_status.recvd_initial_deposition_date 2013-04-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pokkuluri, P.R.' 1 'Mack, J.C.' 2 'Bearden, J.' 3 'Rakowski, E.' 4 'Schiffer, M.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title ;Analysis of periplasmic sensor domains from Anaeromyxobacter dehalogenans 2CP-C: structure of one sensor domain from a histidine kinase and another from a chemotaxis protein. ; _citation.journal_abbrev Microbiologyopen _citation.journal_volume 2 _citation.page_first 766 _citation.page_last 777 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2045-8827 _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23897711 _citation.pdbx_database_id_DOI 10.1002/mbo3.112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Pokkuluri, P.R.' 1 primary 'Dwulit-Smith, J.' 2 primary 'Duke, N.E.' 3 primary 'Wilton, R.' 4 primary 'Mack, J.C.' 5 primary 'Bearden, J.' 6 primary 'Rakowski, E.' 7 primary 'Babnigg, G.' 8 primary 'Szurmant, H.' 9 primary 'Joachimiak, A.' 10 primary 'Schiffer, M.' 11 # _cell.entry_id 4K08 _cell.length_a 50.595 _cell.length_b 50.595 _cell.length_c 112.733 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4K08 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-accepting chemotaxis sensory transducer' 17317.023 1 ? ? 'Periplasmic sensor domain (UNP residues 38-190)' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AR(MSE)LAERQAKVRALVEAAHGLVEHQGARAARGEISADEARRAALEALRALRYDGSEYFWVNDLEPR(MSE)V (MSE)HPTNPQLDGQDLSGYRDPNGKLLFQEFVRTVRARGSGFVDYLWPKPGSTVPVPKISFVTQYQPWGWVVGSGLYVD DLDAAVRQE ; _entity_poly.pdbx_seq_one_letter_code_can ;ARMLAERQAKVRALVEAAHGLVEHQGARAARGEISADEARRAALEALRALRYDGSEYFWVNDLEPRMVMHPTNPQLDGQD LSGYRDPNGKLLFQEFVRTVRARGSGFVDYLWPKPGSTVPVPKISFVTQYQPWGWVVGSGLYVDDLDAAVRQE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC100261 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ARG n 1 3 MSE n 1 4 LEU n 1 5 ALA n 1 6 GLU n 1 7 ARG n 1 8 GLN n 1 9 ALA n 1 10 LYS n 1 11 VAL n 1 12 ARG n 1 13 ALA n 1 14 LEU n 1 15 VAL n 1 16 GLU n 1 17 ALA n 1 18 ALA n 1 19 HIS n 1 20 GLY n 1 21 LEU n 1 22 VAL n 1 23 GLU n 1 24 HIS n 1 25 GLN n 1 26 GLY n 1 27 ALA n 1 28 ARG n 1 29 ALA n 1 30 ALA n 1 31 ARG n 1 32 GLY n 1 33 GLU n 1 34 ILE n 1 35 SER n 1 36 ALA n 1 37 ASP n 1 38 GLU n 1 39 ALA n 1 40 ARG n 1 41 ARG n 1 42 ALA n 1 43 ALA n 1 44 LEU n 1 45 GLU n 1 46 ALA n 1 47 LEU n 1 48 ARG n 1 49 ALA n 1 50 LEU n 1 51 ARG n 1 52 TYR n 1 53 ASP n 1 54 GLY n 1 55 SER n 1 56 GLU n 1 57 TYR n 1 58 PHE n 1 59 TRP n 1 60 VAL n 1 61 ASN n 1 62 ASP n 1 63 LEU n 1 64 GLU n 1 65 PRO n 1 66 ARG n 1 67 MSE n 1 68 VAL n 1 69 MSE n 1 70 HIS n 1 71 PRO n 1 72 THR n 1 73 ASN n 1 74 PRO n 1 75 GLN n 1 76 LEU n 1 77 ASP n 1 78 GLY n 1 79 GLN n 1 80 ASP n 1 81 LEU n 1 82 SER n 1 83 GLY n 1 84 TYR n 1 85 ARG n 1 86 ASP n 1 87 PRO n 1 88 ASN n 1 89 GLY n 1 90 LYS n 1 91 LEU n 1 92 LEU n 1 93 PHE n 1 94 GLN n 1 95 GLU n 1 96 PHE n 1 97 VAL n 1 98 ARG n 1 99 THR n 1 100 VAL n 1 101 ARG n 1 102 ALA n 1 103 ARG n 1 104 GLY n 1 105 SER n 1 106 GLY n 1 107 PHE n 1 108 VAL n 1 109 ASP n 1 110 TYR n 1 111 LEU n 1 112 TRP n 1 113 PRO n 1 114 LYS n 1 115 PRO n 1 116 GLY n 1 117 SER n 1 118 THR n 1 119 VAL n 1 120 PRO n 1 121 VAL n 1 122 PRO n 1 123 LYS n 1 124 ILE n 1 125 SER n 1 126 PHE n 1 127 VAL n 1 128 THR n 1 129 GLN n 1 130 TYR n 1 131 GLN n 1 132 PRO n 1 133 TRP n 1 134 GLY n 1 135 TRP n 1 136 VAL n 1 137 VAL n 1 138 GLY n 1 139 SER n 1 140 GLY n 1 141 LEU n 1 142 TYR n 1 143 VAL n 1 144 ASP n 1 145 ASP n 1 146 LEU n 1 147 ASP n 1 148 ALA n 1 149 ALA n 1 150 VAL n 1 151 ARG n 1 152 GLN n 1 153 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Adeh_3718 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 2CP-C _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Anaeromyxobacter dehalogenans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 290397 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2IFX2_ANADE _struct_ref.pdbx_db_accession Q2IFX2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ARMLAERQAKVRALVEAAHGLVEHQGARAARGEISADEARRAALEALRALRYDGSEYFWVNDLEPRMVMHPTNPQLDGQD LSGYRDPNGKLLFQEFVRTVRARGSGFVDYLWPKPGSTVPVPKISFVTQYQPWGWVVGSGLYVDDLDAAVRQE ; _struct_ref.pdbx_align_begin 38 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4K08 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2IFX2 _struct_ref_seq.db_align_beg 38 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 38 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4K08 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Membfac-2 (12% PEG4000, 0.1M sodium acetate pH 4.6, 0.1 M zinc acetate) diluted by water; (membfac-2, 350 uL + water, 150 uL), VAPOR DIFFUSION, HANGING DROP, temperature 298K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2010-11-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97911 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97911 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4K08 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.0 _reflns.number_obs 21845 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 53 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.196 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4K08 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21799 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.594 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 99.91 _refine.ls_R_factor_obs 0.1972 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1953 _refine.ls_R_factor_R_free 0.2377 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.76 _refine.ls_number_reflns_R_free 1037 _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -2.1087 _refine.aniso_B[2][2] -2.1087 _refine.aniso_B[3][3] 4.2174 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 40.130 _refine.pdbx_solvent_vdw_probe_radii 0.90 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.77 _refine.pdbx_ls_cross_valid_method ? _refine.details 'Hydrogens were added in the riding positions' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.53 _refine.pdbx_overall_phase_error 21.30 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1121 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 1202 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 34.594 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.019 ? ? 1180 'X-RAY DIFFRACTION' ? f_angle_d 1.675 ? ? 1603 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.421 ? ? 430 'X-RAY DIFFRACTION' ? f_chiral_restr 0.095 ? ? 165 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 214 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.0001 2.1056 2986 0.2348 100.00 0.2864 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.1056 2.2375 2901 0.2257 100.00 0.2902 . . 165 . . . . 'X-RAY DIFFRACTION' . 2.2375 2.4102 2998 0.1957 100.00 0.2568 . . 168 . . . . 'X-RAY DIFFRACTION' . 2.4102 2.6526 2952 0.1984 100.00 0.2310 . . 163 . . . . 'X-RAY DIFFRACTION' . 2.6526 3.0363 2966 0.1834 100.00 0.2741 . . 119 . . . . 'X-RAY DIFFRACTION' . 3.0363 3.8246 2978 0.1862 100.00 0.2352 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.8246 34.5990 2981 0.1927 100.00 0.2021 . . 136 . . . . # _struct.entry_id 4K08 _struct.title 'Periplasmic sensor domain of chemotaxis protein, Adeh_3718' _struct.pdbx_descriptor 'Methyl-accepting chemotaxis sensory transducer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4K08 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;methyl accepting chemotaxis, Anaeromyxobacter dehalogenans, PAS-like sensor domain, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, periplasmic sensor domain, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 4 ? ARG A 31 ? LEU A 41 ARG A 68 1 ? 28 HELX_P HELX_P2 2 SER A 35 ? LEU A 50 ? SER A 72 LEU A 87 1 ? 16 HELX_P HELX_P3 3 ASN A 73 ? ASP A 77 ? ASN A 110 ASP A 114 5 ? 5 HELX_P HELX_P4 4 LEU A 91 ? GLY A 104 ? LEU A 128 GLY A 141 1 ? 14 HELX_P HELX_P5 5 GLN A 131 ? TRP A 133 ? GLN A 168 TRP A 170 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 2 C ? ? ? 1_555 A MSE 3 N ? ? A ARG 39 A MSE 40 1_555 ? ? ? ? ? ? ? 1.345 ? covale2 covale ? ? A MSE 3 C ? ? ? 1_555 A LEU 4 N ? ? A MSE 40 A LEU 41 1_555 ? ? ? ? ? ? ? 1.323 ? covale3 covale ? ? A ARG 66 C ? ? ? 1_555 A MSE 67 N ? ? A ARG 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 67 C ? ? ? 1_555 A VAL 68 N ? ? A MSE 104 A VAL 105 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A VAL 68 C ? ? ? 1_555 A MSE 69 N ? ? A VAL 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.341 ? covale6 covale ? ? A MSE 69 C ? ? ? 1_555 A HIS 70 N ? ? A MSE 106 A HIS 107 1_555 ? ? ? ? ? ? ? 1.333 ? metalc1 metalc ? ? A HIS 24 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 61 A ZN 200 1_555 ? ? ? ? ? ? ? 2.064 ? metalc2 metalc ? ? B ZN . ZN ? ? ? 1_555 D HOH . O ? ? A ZN 200 A HOH 338 1_555 ? ? ? ? ? ? ? 2.447 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 2 A . ? ARG 39 A MSE 3 A ? MSE 40 A 1 11.63 2 GLU 64 A . ? GLU 101 A PRO 65 A ? PRO 102 A 1 -4.86 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 67 ? MSE A 69 ? MSE A 104 MSE A 106 A 2 TRP A 59 ? ASP A 62 ? TRP A 96 ASP A 99 A 3 TRP A 135 ? TYR A 142 ? TRP A 172 TYR A 179 A 4 PRO A 120 ? TYR A 130 ? PRO A 157 TYR A 167 A 5 SER A 105 ? PRO A 113 ? SER A 142 PRO A 150 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MSE A 69 ? O MSE A 106 N VAL A 60 ? N VAL A 97 A 2 3 N ASN A 61 ? N ASN A 98 O VAL A 136 ? O VAL A 173 A 3 4 O VAL A 137 ? O VAL A 174 N THR A 128 ? N THR A 165 A 4 5 O SER A 125 ? O SER A 162 N VAL A 108 ? N VAL A 145 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 200' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ACT A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 16 ? GLU A 53 . ? 4_555 ? 2 AC1 4 HIS A 19 ? HIS A 56 . ? 4_555 ? 3 AC1 4 HIS A 24 ? HIS A 61 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 338 . ? 1_555 ? 5 AC2 6 TYR A 57 ? TYR A 94 . ? 1_555 ? 6 AC2 6 TRP A 59 ? TRP A 96 . ? 1_555 ? 7 AC2 6 HIS A 70 ? HIS A 107 . ? 1_555 ? 8 AC2 6 TYR A 110 ? TYR A 147 . ? 1_555 ? 9 AC2 6 TRP A 112 ? TRP A 149 . ? 1_555 ? 10 AC2 6 LYS A 123 ? LYS A 160 . ? 1_555 ? # _database_PDB_matrix.entry_id 4K08 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4K08 _atom_sites.fract_transf_matrix[1][1] 0.019765 _atom_sites.fract_transf_matrix[1][2] 0.011411 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022822 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008871 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 38 38 ALA ALA A . n A 1 2 ARG 2 39 39 ARG ARG A . n A 1 3 MSE 3 40 40 MSE MSE A . n A 1 4 LEU 4 41 41 LEU LEU A . n A 1 5 ALA 5 42 42 ALA ALA A . n A 1 6 GLU 6 43 43 GLU GLU A . n A 1 7 ARG 7 44 44 ARG ARG A . n A 1 8 GLN 8 45 45 GLN GLN A . n A 1 9 ALA 9 46 46 ALA ALA A . n A 1 10 LYS 10 47 47 LYS LYS A . n A 1 11 VAL 11 48 48 VAL VAL A . n A 1 12 ARG 12 49 49 ARG ARG A . n A 1 13 ALA 13 50 50 ALA ALA A . n A 1 14 LEU 14 51 51 LEU LEU A . n A 1 15 VAL 15 52 52 VAL VAL A . n A 1 16 GLU 16 53 53 GLU GLU A . n A 1 17 ALA 17 54 54 ALA ALA A . n A 1 18 ALA 18 55 55 ALA ALA A . n A 1 19 HIS 19 56 56 HIS HIS A . n A 1 20 GLY 20 57 57 GLY GLY A . n A 1 21 LEU 21 58 58 LEU LEU A . n A 1 22 VAL 22 59 59 VAL VAL A . n A 1 23 GLU 23 60 60 GLU GLU A . n A 1 24 HIS 24 61 61 HIS HIS A . n A 1 25 GLN 25 62 62 GLN GLN A . n A 1 26 GLY 26 63 63 GLY GLY A . n A 1 27 ALA 27 64 64 ALA ALA A . n A 1 28 ARG 28 65 65 ARG ARG A . n A 1 29 ALA 29 66 66 ALA ALA A . n A 1 30 ALA 30 67 67 ALA ALA A . n A 1 31 ARG 31 68 68 ARG ARG A . n A 1 32 GLY 32 69 69 GLY GLY A . n A 1 33 GLU 33 70 70 GLU GLU A . n A 1 34 ILE 34 71 71 ILE ILE A . n A 1 35 SER 35 72 72 SER SER A . n A 1 36 ALA 36 73 73 ALA ALA A . n A 1 37 ASP 37 74 74 ASP ASP A . n A 1 38 GLU 38 75 75 GLU GLU A . n A 1 39 ALA 39 76 76 ALA ALA A . n A 1 40 ARG 40 77 77 ARG ARG A . n A 1 41 ARG 41 78 78 ARG ARG A . n A 1 42 ALA 42 79 79 ALA ALA A . n A 1 43 ALA 43 80 80 ALA ALA A . n A 1 44 LEU 44 81 81 LEU LEU A . n A 1 45 GLU 45 82 82 GLU GLU A . n A 1 46 ALA 46 83 83 ALA ALA A . n A 1 47 LEU 47 84 84 LEU LEU A . n A 1 48 ARG 48 85 85 ARG ARG A . n A 1 49 ALA 49 86 86 ALA ALA A . n A 1 50 LEU 50 87 87 LEU LEU A . n A 1 51 ARG 51 88 88 ARG ARG A . n A 1 52 TYR 52 89 89 TYR TYR A . n A 1 53 ASP 53 90 90 ASP ASP A . n A 1 54 GLY 54 91 91 GLY GLY A . n A 1 55 SER 55 92 92 SER SER A . n A 1 56 GLU 56 93 93 GLU GLU A . n A 1 57 TYR 57 94 94 TYR TYR A . n A 1 58 PHE 58 95 95 PHE PHE A . n A 1 59 TRP 59 96 96 TRP TRP A . n A 1 60 VAL 60 97 97 VAL VAL A . n A 1 61 ASN 61 98 98 ASN ASN A . n A 1 62 ASP 62 99 99 ASP ASP A . n A 1 63 LEU 63 100 100 LEU LEU A . n A 1 64 GLU 64 101 101 GLU GLU A . n A 1 65 PRO 65 102 102 PRO PRO A . n A 1 66 ARG 66 103 103 ARG ARG A . n A 1 67 MSE 67 104 104 MSE MSE A . n A 1 68 VAL 68 105 105 VAL VAL A . n A 1 69 MSE 69 106 106 MSE MSE A . n A 1 70 HIS 70 107 107 HIS HIS A . n A 1 71 PRO 71 108 108 PRO PRO A . n A 1 72 THR 72 109 109 THR THR A . n A 1 73 ASN 73 110 110 ASN ASN A . n A 1 74 PRO 74 111 111 PRO PRO A . n A 1 75 GLN 75 112 112 GLN GLN A . n A 1 76 LEU 76 113 113 LEU LEU A . n A 1 77 ASP 77 114 114 ASP ASP A . n A 1 78 GLY 78 115 115 GLY GLY A . n A 1 79 GLN 79 116 116 GLN GLN A . n A 1 80 ASP 80 117 117 ASP ASP A . n A 1 81 LEU 81 118 118 LEU LEU A . n A 1 82 SER 82 119 119 SER SER A . n A 1 83 GLY 83 120 120 GLY GLY A . n A 1 84 TYR 84 121 121 TYR TYR A . n A 1 85 ARG 85 122 122 ARG ARG A . n A 1 86 ASP 86 123 123 ASP ASP A . n A 1 87 PRO 87 124 124 PRO PRO A . n A 1 88 ASN 88 125 125 ASN ASN A . n A 1 89 GLY 89 126 126 GLY GLY A . n A 1 90 LYS 90 127 127 LYS LYS A . n A 1 91 LEU 91 128 128 LEU LEU A . n A 1 92 LEU 92 129 129 LEU LEU A . n A 1 93 PHE 93 130 130 PHE PHE A . n A 1 94 GLN 94 131 131 GLN GLN A . n A 1 95 GLU 95 132 132 GLU GLU A . n A 1 96 PHE 96 133 133 PHE PHE A . n A 1 97 VAL 97 134 134 VAL VAL A . n A 1 98 ARG 98 135 135 ARG ARG A . n A 1 99 THR 99 136 136 THR THR A . n A 1 100 VAL 100 137 137 VAL VAL A . n A 1 101 ARG 101 138 138 ARG ARG A . n A 1 102 ALA 102 139 139 ALA ALA A . n A 1 103 ARG 103 140 140 ARG ARG A . n A 1 104 GLY 104 141 141 GLY GLY A . n A 1 105 SER 105 142 142 SER SER A . n A 1 106 GLY 106 143 143 GLY GLY A . n A 1 107 PHE 107 144 144 PHE PHE A . n A 1 108 VAL 108 145 145 VAL VAL A . n A 1 109 ASP 109 146 146 ASP ASP A . n A 1 110 TYR 110 147 147 TYR TYR A . n A 1 111 LEU 111 148 148 LEU LEU A . n A 1 112 TRP 112 149 149 TRP TRP A . n A 1 113 PRO 113 150 150 PRO PRO A . n A 1 114 LYS 114 151 151 LYS LYS A . n A 1 115 PRO 115 152 152 PRO PRO A . n A 1 116 GLY 116 153 153 GLY GLY A . n A 1 117 SER 117 154 154 SER SER A . n A 1 118 THR 118 155 155 THR THR A . n A 1 119 VAL 119 156 156 VAL VAL A . n A 1 120 PRO 120 157 157 PRO PRO A . n A 1 121 VAL 121 158 158 VAL VAL A . n A 1 122 PRO 122 159 159 PRO PRO A . n A 1 123 LYS 123 160 160 LYS LYS A . n A 1 124 ILE 124 161 161 ILE ILE A . n A 1 125 SER 125 162 162 SER SER A . n A 1 126 PHE 126 163 163 PHE PHE A . n A 1 127 VAL 127 164 164 VAL VAL A . n A 1 128 THR 128 165 165 THR THR A . n A 1 129 GLN 129 166 166 GLN GLN A . n A 1 130 TYR 130 167 167 TYR TYR A . n A 1 131 GLN 131 168 168 GLN GLN A . n A 1 132 PRO 132 169 169 PRO PRO A . n A 1 133 TRP 133 170 170 TRP TRP A . n A 1 134 GLY 134 171 171 GLY GLY A . n A 1 135 TRP 135 172 172 TRP TRP A . n A 1 136 VAL 136 173 173 VAL VAL A . n A 1 137 VAL 137 174 174 VAL VAL A . n A 1 138 GLY 138 175 175 GLY GLY A . n A 1 139 SER 139 176 176 SER SER A . n A 1 140 GLY 140 177 177 GLY GLY A . n A 1 141 LEU 141 178 178 LEU LEU A . n A 1 142 TYR 142 179 179 TYR TYR A . n A 1 143 VAL 143 180 180 VAL VAL A . n A 1 144 ASP 144 181 181 ASP ASP A . n A 1 145 ASP 145 182 ? ? ? A . n A 1 146 LEU 146 183 ? ? ? A . n A 1 147 ASP 147 184 ? ? ? A . n A 1 148 ALA 148 185 ? ? ? A . n A 1 149 ALA 149 186 ? ? ? A . n A 1 150 VAL 150 187 ? ? ? A . n A 1 151 ARG 151 188 ? ? ? A . n A 1 152 GLN 152 189 ? ? ? A . n A 1 153 GLU 153 190 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 40 ? MET SELENOMETHIONINE 2 A MSE 67 A MSE 104 ? MET SELENOMETHIONINE 3 A MSE 69 A MSE 106 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2250 ? 2 MORE -89 ? 2 'SSA (A^2)' 13020 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 24 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 61 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id ZN _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id ZN _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id ZN _pdbx_struct_conn_angle.ptnr2_auth_seq_id 200 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id D _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 338 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 91.1 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-17 2 'Structure model' 1 1 2015-04-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.4778 18.4850 1.8602 0.3012 0.3570 0.4059 -0.1380 0.0649 -0.0766 2.1735 3.8082 3.5337 0.1650 -0.5563 0.2133 -0.1446 0.2946 -0.4766 -0.3735 0.0014 0.6307 0.4816 -0.6357 -0.0827 'X-RAY DIFFRACTION' 2 ? refined 9.7813 20.4726 14.3858 0.3237 0.1753 0.1895 0.0739 0.3550 0.0856 1.9590 1.1006 2.3438 -0.2559 -0.4139 -0.1904 -0.0654 -0.0592 -0.6534 0.6040 0.2915 0.4522 0.2854 0.0200 0.7079 'X-RAY DIFFRACTION' 3 ? refined -4.0792 20.1140 17.9493 0.3518 0.3831 0.6354 0.0272 0.3545 0.1147 1.8243 0.9166 1.0650 1.1885 -0.9965 -0.6664 -0.1048 0.0627 -0.2954 0.2871 0.0360 0.5153 0.2134 -0.6110 0.0877 'X-RAY DIFFRACTION' 4 ? refined 2.7434 25.6707 11.3681 0.2626 0.2747 0.3840 0.0387 0.1708 0.0526 1.2190 1.6718 1.9357 -0.5482 -0.4508 0.0312 -0.1726 0.1475 -0.2442 0.1726 0.1852 0.3650 0.0343 -0.4211 -0.0380 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 38:68) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 69:128) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 129:140) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 141:181) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 'data collection' . ? 1 HKL-3000 phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.1_743)' ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 375 ? ? O A HOH 376 ? ? 1.87 2 1 O A HOH 341 ? ? O A HOH 342 ? ? 2.12 3 1 O A HOH 370 ? ? O A HOH 372 ? ? 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 58 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 58 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 58 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.63 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.33 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 39 ? ? -164.97 73.38 2 1 MSE A 40 ? ? 92.00 -13.03 3 1 ASP A 99 ? ? -105.24 -169.49 4 1 TYR A 147 ? ? -172.58 -179.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 39 ? NE ? A ARG 2 NE 2 1 Y 1 A ARG 39 ? CZ ? A ARG 2 CZ 3 1 Y 1 A ARG 39 ? NH1 ? A ARG 2 NH1 4 1 Y 1 A ARG 39 ? NH2 ? A ARG 2 NH2 5 1 Y 1 A GLU 43 ? CD ? A GLU 6 CD 6 1 Y 1 A GLU 43 ? OE1 ? A GLU 6 OE1 7 1 Y 1 A GLU 43 ? OE2 ? A GLU 6 OE2 8 1 Y 1 A ILE 71 ? CG2 ? A ILE 34 CG2 9 1 Y 1 A ILE 71 ? CD1 ? A ILE 34 CD1 10 1 Y 1 A GLN 112 ? CD ? A GLN 75 CD 11 1 Y 1 A GLN 112 ? OE1 ? A GLN 75 OE1 12 1 Y 1 A GLN 112 ? NE2 ? A GLN 75 NE2 13 1 Y 1 A ARG 140 ? CG ? A ARG 103 CG 14 1 Y 1 A ARG 140 ? CD ? A ARG 103 CD 15 1 Y 1 A ARG 140 ? NE ? A ARG 103 NE 16 1 Y 1 A ARG 140 ? CZ ? A ARG 103 CZ 17 1 Y 1 A ARG 140 ? NH1 ? A ARG 103 NH1 18 1 Y 1 A ARG 140 ? NH2 ? A ARG 103 NH2 19 1 Y 1 A ASP 181 ? CG ? A ASP 144 CG 20 1 Y 1 A ASP 181 ? OD1 ? A ASP 144 OD1 21 1 Y 1 A ASP 181 ? OD2 ? A ASP 144 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 182 ? A ASP 145 2 1 Y 1 A LEU 183 ? A LEU 146 3 1 Y 1 A ASP 184 ? A ASP 147 4 1 Y 1 A ALA 185 ? A ALA 148 5 1 Y 1 A ALA 186 ? A ALA 149 6 1 Y 1 A VAL 187 ? A VAL 150 7 1 Y 1 A ARG 188 ? A ARG 151 8 1 Y 1 A GLN 189 ? A GLN 152 9 1 Y 1 A GLU 190 ? A GLU 153 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'ACETATE ION' ACT 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 200 200 ZN ZN A . C 3 ACT 1 201 201 ACT ACT A . D 4 HOH 1 301 211 HOH HOH A . D 4 HOH 2 302 212 HOH HOH A . D 4 HOH 3 303 213 HOH HOH A . D 4 HOH 4 304 214 HOH HOH A . D 4 HOH 5 305 215 HOH HOH A . D 4 HOH 6 306 216 HOH HOH A . D 4 HOH 7 307 217 HOH HOH A . D 4 HOH 8 308 218 HOH HOH A . D 4 HOH 9 309 219 HOH HOH A . D 4 HOH 10 310 220 HOH HOH A . D 4 HOH 11 311 221 HOH HOH A . D 4 HOH 12 312 222 HOH HOH A . D 4 HOH 13 313 223 HOH HOH A . D 4 HOH 14 314 224 HOH HOH A . D 4 HOH 15 315 225 HOH HOH A . D 4 HOH 16 316 226 HOH HOH A . D 4 HOH 17 317 227 HOH HOH A . D 4 HOH 18 318 228 HOH HOH A . D 4 HOH 19 319 229 HOH HOH A . D 4 HOH 20 320 230 HOH HOH A . D 4 HOH 21 321 231 HOH HOH A . D 4 HOH 22 322 232 HOH HOH A . D 4 HOH 23 323 233 HOH HOH A . D 4 HOH 24 324 234 HOH HOH A . D 4 HOH 25 325 235 HOH HOH A . D 4 HOH 26 326 236 HOH HOH A . D 4 HOH 27 327 237 HOH HOH A . D 4 HOH 28 328 238 HOH HOH A . D 4 HOH 29 329 239 HOH HOH A . D 4 HOH 30 330 240 HOH HOH A . D 4 HOH 31 331 241 HOH HOH A . D 4 HOH 32 332 242 HOH HOH A . D 4 HOH 33 333 243 HOH HOH A . D 4 HOH 34 334 244 HOH HOH A . D 4 HOH 35 335 245 HOH HOH A . D 4 HOH 36 336 246 HOH HOH A . D 4 HOH 37 337 247 HOH HOH A . D 4 HOH 38 338 248 HOH HOH A . D 4 HOH 39 339 249 HOH HOH A . D 4 HOH 40 340 250 HOH HOH A . D 4 HOH 41 341 251 HOH HOH A . D 4 HOH 42 342 252 HOH HOH A . D 4 HOH 43 343 253 HOH HOH A . D 4 HOH 44 344 254 HOH HOH A . D 4 HOH 45 345 255 HOH HOH A . D 4 HOH 46 346 256 HOH HOH A . D 4 HOH 47 347 257 HOH HOH A . D 4 HOH 48 348 258 HOH HOH A . D 4 HOH 49 349 259 HOH HOH A . D 4 HOH 50 350 260 HOH HOH A . D 4 HOH 51 351 261 HOH HOH A . D 4 HOH 52 352 262 HOH HOH A . D 4 HOH 53 353 263 HOH HOH A . D 4 HOH 54 354 264 HOH HOH A . D 4 HOH 55 355 265 HOH HOH A . D 4 HOH 56 356 266 HOH HOH A . D 4 HOH 57 357 267 HOH HOH A . D 4 HOH 58 358 268 HOH HOH A . D 4 HOH 59 359 269 HOH HOH A . D 4 HOH 60 360 270 HOH HOH A . D 4 HOH 61 361 271 HOH HOH A . D 4 HOH 62 362 272 HOH HOH A . D 4 HOH 63 363 273 HOH HOH A . D 4 HOH 64 364 274 HOH HOH A . D 4 HOH 65 365 275 HOH HOH A . D 4 HOH 66 366 276 HOH HOH A . D 4 HOH 67 367 277 HOH HOH A . D 4 HOH 68 368 278 HOH HOH A . D 4 HOH 69 369 279 HOH HOH A . D 4 HOH 70 370 280 HOH HOH A . D 4 HOH 71 371 281 HOH HOH A . D 4 HOH 72 372 282 HOH HOH A . D 4 HOH 73 373 283 HOH HOH A . D 4 HOH 74 374 284 HOH HOH A . D 4 HOH 75 375 285 HOH HOH A . D 4 HOH 76 376 286 HOH HOH A . #