HEADER ISOMERASE 15-APR-13 4K6A TITLE REVISED CRYSTAL STRUCTURE OF APO-FORM OF TRIOSEPHOSPHATE ISOMERASE TITLE 2 (TPIA) FROM ESCHERICHIA COLI AT 1.8 ANGSTROM RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRIOSEPHOSPHATE ISOMERASE (TPIA); COMPND 5 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 6 EC: 5.3.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1110693; SOURCE 4 STRAIN: K-12 SUBSTR. MG1655; SOURCE 5 GENE: ECMDS42_3357, TPIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, TIM BETA/ALPHA BARREL, TRIOSE-PHOSPHATE ISOMERASE KEYWDS 4 ACTIVITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,M.KUHN,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR, AUTHOR 2 S.GRIMSHAW,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 3 DISEASES (CSGID) REVDAT 3 20-SEP-23 4K6A 1 REMARK SEQADV LINK REVDAT 2 06-SEP-17 4K6A 1 JRNL REMARK REVDAT 1 01-MAY-13 4K6A 0 JRNL AUTH M.L.KUHN,B.ZEMAITAITIS,L.I.HU,A.SAHU,D.SORENSEN,G.MINASOV, JRNL AUTH 2 B.P.LIMA,M.SCHOLLE,M.MRKSICH,W.F.ANDERSON,B.W.GIBSON, JRNL AUTH 3 B.SCHILLING,A.J.WOLFE JRNL TITL STRUCTURAL, KINETIC AND PROTEOMIC CHARACTERIZATION OF ACETYL JRNL TITL 2 PHOSPHATE-DEPENDENT BACTERIAL PROTEIN ACETYLATION. JRNL REF PLOS ONE V. 9 94816 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24756028 JRNL DOI 10.1371/JOURNAL.PONE.0094816 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2228 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 546 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4175 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2752 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5691 ; 1.327 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6789 ; 0.878 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 579 ; 2.769 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;33.452 ;25.114 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 724 ; 9.469 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;10.237 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 635 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4933 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 805 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2737 ; 0.973 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1124 ; 0.329 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4388 ; 1.584 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1438 ; 2.815 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1303 ; 4.664 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5585 -22.5557 17.9840 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0223 REMARK 3 T33: 0.0052 T12: 0.0035 REMARK 3 T13: -0.0052 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.7111 L22: 0.7941 REMARK 3 L33: 0.5964 L12: 0.2294 REMARK 3 L13: -0.0946 L23: -0.0197 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.0562 S13: -0.0192 REMARK 3 S21: 0.0230 S22: 0.0202 S23: 0.0236 REMARK 3 S31: 0.1121 S32: -0.0090 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7898 -36.1754 23.7996 REMARK 3 T TENSOR REMARK 3 T11: 0.1073 T22: 0.0196 REMARK 3 T33: 0.0290 T12: -0.0003 REMARK 3 T13: -0.0097 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.8828 L22: 0.8986 REMARK 3 L33: 1.4945 L12: -0.1060 REMARK 3 L13: -0.3067 L23: 0.2971 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.0753 S13: -0.1128 REMARK 3 S21: 0.0544 S22: 0.0238 S23: -0.0088 REMARK 3 S31: 0.2526 S32: 0.0055 S33: -0.0529 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8202 -2.6658 14.7919 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0401 REMARK 3 T33: 0.0174 T12: 0.0131 REMARK 3 T13: 0.0091 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.8950 L22: 1.0503 REMARK 3 L33: 0.7608 L12: 0.0856 REMARK 3 L13: -0.0694 L23: 0.1821 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: -0.0513 S13: 0.0332 REMARK 3 S21: -0.0418 S22: 0.0599 S23: -0.0060 REMARK 3 S31: -0.0338 S32: 0.0668 S33: -0.0443 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 143 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5818 9.4145 18.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: 0.0718 REMARK 3 T33: 0.0683 T12: -0.0174 REMARK 3 T13: 0.0252 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 1.0513 L22: 1.6919 REMARK 3 L33: 1.2193 L12: -0.4696 REMARK 3 L13: 0.2250 L23: 0.2030 REMARK 3 S TENSOR REMARK 3 S11: -0.0519 S12: -0.1071 S13: 0.1734 REMARK 3 S21: -0.0123 S22: 0.0959 S23: -0.1536 REMARK 3 S31: -0.2204 S32: 0.1251 S33: -0.0440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4K6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03326 REMARK 200 MONOCHROMATOR : SI {1,1,1} REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TRE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.6MG/ML, 0.5M SODIUM REMARK 280 CLORIDE, 0.01M TRIS-HCL PH 8.3; SCREEN: PACT (D11), 0.2M CALCIUM REMARK 280 CHLORIDE, 0.1M TRIS-HCL PH 8.0, 20% (W/V) PEG 6000., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.03300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.88450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.74400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.88450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.03300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.74400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -145.05 51.96 REMARK 500 LYS B 11 -145.70 55.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 76 O REMARK 620 2 HOH A 444 O 97.8 REMARK 620 3 HOH B 354 O 90.4 167.7 REMARK 620 4 HOH B 454 O 167.4 90.4 80.1 REMARK 620 5 HOH B 477 O 90.5 104.3 84.7 96.8 REMARK 620 6 HOH B 512 O 88.5 91.4 79.6 81.8 164.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TRE RELATED DB: PDB REMARK 900 STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM ESCHERICHIA COLI REMARK 900 DETERMINED AT 2.6 A RESOLUTION. REMARK 900 RELATED ID: IDP91829 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: CSGID-IDP91829 RELATED DB: TARGETTRACK DBREF 4K6A A 1 255 UNP H0QFE6 H0QFE6_ECOLI 1 255 DBREF 4K6A B 1 255 UNP H0QFE6 H0QFE6_ECOLI 1 255 SEQADV 4K6A MET A -23 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS A -22 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS A -21 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS A -20 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS A -19 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS A -18 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS A -17 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A SER A -16 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A SER A -15 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A GLY A -14 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A VAL A -13 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A ASP A -12 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A LEU A -11 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A GLY A -10 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A THR A -9 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A GLU A -8 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A ASN A -7 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A LEU A -6 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A TYR A -5 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A PHE A -4 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A GLN A -3 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A SER A -2 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A ASN A -1 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A ALA A 0 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A MET B -23 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS B -22 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS B -21 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS B -20 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS B -19 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS B -18 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A HIS B -17 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A SER B -16 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A SER B -15 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A GLY B -14 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A VAL B -13 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A ASP B -12 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A LEU B -11 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A GLY B -10 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A THR B -9 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A GLU B -8 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A ASN B -7 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A LEU B -6 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A TYR B -5 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A PHE B -4 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A GLN B -3 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A SER B -2 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A ASN B -1 UNP H0QFE6 EXPRESSION TAG SEQADV 4K6A ALA B 0 UNP H0QFE6 EXPRESSION TAG SEQRES 1 A 279 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 279 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET ARG SEQRES 3 A 279 HIS PRO LEU VAL MET GLY ASN TRP LYS LEU ASN GLY SER SEQRES 4 A 279 ARG HIS MET VAL HIS GLU LEU VAL SER ASN LEU ARG LYS SEQRES 5 A 279 GLU LEU ALA GLY VAL ALA GLY CYS ALA VAL ALA ILE ALA SEQRES 6 A 279 PRO PRO GLU MET TYR ILE ASP MET ALA LYS ARG GLU ALA SEQRES 7 A 279 GLU GLY SER HIS ILE MET LEU GLY ALA GLN ASN VAL ASP SEQRES 8 A 279 LEU ASN LEU SER GLY ALA PHE THR GLY GLU THR SER ALA SEQRES 9 A 279 ALA MET LEU LYS ASP ILE GLY ALA GLN TYR ILE ILE ILE SEQRES 10 A 279 GLY HIS SER GLU ARG ARG THR TYR HIS LYS GLU SER ASP SEQRES 11 A 279 GLU LEU ILE ALA LYS LYS PHE ALA VAL LEU LYS GLU GLN SEQRES 12 A 279 GLY LEU THR PRO VAL LEU CYS ILE GLY GLU THR GLU ALA SEQRES 13 A 279 GLU ASN GLU ALA GLY LYS THR GLU GLU VAL CYS ALA ARG SEQRES 14 A 279 GLN ILE ASP ALA VAL LEU LYS THR GLN GLY ALA ALA ALA SEQRES 15 A 279 PHE GLU GLY ALA VAL ILE ALA TYR GLU PRO VAL TRP ALA SEQRES 16 A 279 ILE GLY THR GLY LYS SER ALA THR PRO ALA GLN ALA GLN SEQRES 17 A 279 ALA VAL HIS LYS PHE ILE ARG ASP HIS ILE ALA LYS VAL SEQRES 18 A 279 ASP ALA ASN ILE ALA GLU GLN VAL ILE ILE GLN TYR GLY SEQRES 19 A 279 GLY SER VAL ASN ALA SER ASN ALA ALA GLU LEU PHE ALA SEQRES 20 A 279 GLN PRO ASP ILE ASP GLY ALA LEU VAL GLY GLY ALA SER SEQRES 21 A 279 LEU LYS ALA ASP ALA PHE ALA VAL ILE VAL LYS ALA ALA SEQRES 22 A 279 GLU ALA ALA LYS GLN ALA SEQRES 1 B 279 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 279 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET ARG SEQRES 3 B 279 HIS PRO LEU VAL MET GLY ASN TRP LYS LEU ASN GLY SER SEQRES 4 B 279 ARG HIS MET VAL HIS GLU LEU VAL SER ASN LEU ARG LYS SEQRES 5 B 279 GLU LEU ALA GLY VAL ALA GLY CYS ALA VAL ALA ILE ALA SEQRES 6 B 279 PRO PRO GLU MET TYR ILE ASP MET ALA LYS ARG GLU ALA SEQRES 7 B 279 GLU GLY SER HIS ILE MET LEU GLY ALA GLN ASN VAL ASP SEQRES 8 B 279 LEU ASN LEU SER GLY ALA PHE THR GLY GLU THR SER ALA SEQRES 9 B 279 ALA MET LEU LYS ASP ILE GLY ALA GLN TYR ILE ILE ILE SEQRES 10 B 279 GLY HIS SER GLU ARG ARG THR TYR HIS LYS GLU SER ASP SEQRES 11 B 279 GLU LEU ILE ALA LYS LYS PHE ALA VAL LEU LYS GLU GLN SEQRES 12 B 279 GLY LEU THR PRO VAL LEU CYS ILE GLY GLU THR GLU ALA SEQRES 13 B 279 GLU ASN GLU ALA GLY LYS THR GLU GLU VAL CYS ALA ARG SEQRES 14 B 279 GLN ILE ASP ALA VAL LEU LYS THR GLN GLY ALA ALA ALA SEQRES 15 B 279 PHE GLU GLY ALA VAL ILE ALA TYR GLU PRO VAL TRP ALA SEQRES 16 B 279 ILE GLY THR GLY LYS SER ALA THR PRO ALA GLN ALA GLN SEQRES 17 B 279 ALA VAL HIS LYS PHE ILE ARG ASP HIS ILE ALA LYS VAL SEQRES 18 B 279 ASP ALA ASN ILE ALA GLU GLN VAL ILE ILE GLN TYR GLY SEQRES 19 B 279 GLY SER VAL ASN ALA SER ASN ALA ALA GLU LEU PHE ALA SEQRES 20 B 279 GLN PRO ASP ILE ASP GLY ALA LEU VAL GLY GLY ALA SER SEQRES 21 B 279 LEU LYS ALA ASP ALA PHE ALA VAL ILE VAL LYS ALA ALA SEQRES 22 B 279 GLU ALA ALA LYS GLN ALA HET NA A 301 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *546(H2 O) HELIX 1 1 SER A 15 ALA A 31 1 17 HELIX 2 2 PRO A 43 MET A 45 5 3 HELIX 3 3 TYR A 46 GLU A 55 1 10 HELIX 4 4 SER A 79 GLY A 87 1 9 HELIX 5 5 HIS A 95 HIS A 102 1 8 HELIX 6 6 SER A 105 GLN A 119 1 15 HELIX 7 7 THR A 130 ALA A 136 1 7 HELIX 8 8 LYS A 138 GLY A 155 1 18 HELIX 9 9 ALA A 156 GLU A 160 5 5 HELIX 10 10 PRO A 168 ILE A 172 5 5 HELIX 11 11 THR A 179 LYS A 196 1 18 HELIX 12 12 ASP A 198 VAL A 205 1 8 HELIX 13 13 ASN A 217 ALA A 223 1 7 HELIX 14 14 GLY A 233 LEU A 237 5 5 HELIX 15 15 LYS A 238 GLN A 254 1 17 HELIX 16 16 SER B 15 LEU B 30 1 16 HELIX 17 17 PRO B 43 MET B 45 5 3 HELIX 18 18 TYR B 46 ALA B 54 1 9 HELIX 19 19 SER B 79 ILE B 86 1 8 HELIX 20 20 HIS B 95 HIS B 102 1 8 HELIX 21 21 SER B 105 GLY B 120 1 16 HELIX 22 22 THR B 130 ALA B 136 1 7 HELIX 23 23 LYS B 138 GLY B 155 1 18 HELIX 24 24 ALA B 156 GLU B 160 5 5 HELIX 25 25 PRO B 168 ILE B 172 5 5 HELIX 26 26 THR B 179 LYS B 196 1 18 HELIX 27 27 ASP B 198 VAL B 205 1 8 HELIX 28 28 ASN B 217 ALA B 223 1 7 HELIX 29 29 GLY B 233 LEU B 237 5 5 HELIX 30 30 LYS B 238 GLN B 254 1 17 SHEET 1 A 9 LEU A 5 ASN A 9 0 SHEET 2 A 9 ALA A 37 ALA A 41 1 O ALA A 39 N GLY A 8 SHEET 3 A 9 ILE A 59 ALA A 63 1 O MET A 60 N VAL A 38 SHEET 4 A 9 TYR A 90 ILE A 93 1 O ILE A 92 N ALA A 63 SHEET 5 A 9 THR A 122 ILE A 127 1 O CYS A 126 N ILE A 93 SHEET 6 A 9 VAL A 163 TYR A 166 1 O VAL A 163 N LEU A 125 SHEET 7 A 9 ILE A 206 TYR A 209 1 O GLN A 208 N ILE A 164 SHEET 8 A 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 A 9 LEU A 5 ASN A 9 1 N MET A 7 O VAL A 232 SHEET 1 B 9 LEU B 5 ASN B 9 0 SHEET 2 B 9 ALA B 37 ALA B 41 1 O ALA B 39 N GLY B 8 SHEET 3 B 9 MET B 60 ALA B 63 1 O MET B 60 N VAL B 38 SHEET 4 B 9 TYR B 90 ILE B 93 1 O ILE B 92 N ALA B 63 SHEET 5 B 9 THR B 122 ILE B 127 1 O CYS B 126 N ILE B 93 SHEET 6 B 9 VAL B 163 TYR B 166 1 O VAL B 163 N LEU B 125 SHEET 7 B 9 ILE B 206 TYR B 209 1 O GLN B 208 N ILE B 164 SHEET 8 B 9 GLY B 229 VAL B 232 1 O GLY B 229 N TYR B 209 SHEET 9 B 9 LEU B 5 ASN B 9 1 N ASN B 9 O VAL B 232 LINK O GLY A 76 NA NA A 301 1555 1555 2.48 LINK NA NA A 301 O HOH A 444 1555 1555 2.07 LINK NA NA A 301 O HOH B 354 1555 1555 2.21 LINK NA NA A 301 O HOH B 454 1555 1555 2.68 LINK NA NA A 301 O HOH B 477 1555 1555 2.50 LINK NA NA A 301 O HOH B 512 1555 1555 2.44 SITE 1 AC1 6 GLY A 76 HOH A 444 HOH B 354 HOH B 454 SITE 2 AC1 6 HOH B 477 HOH B 512 CRYST1 46.066 67.488 149.769 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006677 0.00000