data_4K6Z # _entry.id 4K6Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4K6Z RCSB RCSB078969 WWPDB D_1000078969 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4K6Z _pdbx_database_status.recvd_initial_deposition_date 2013-04-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fong, R.' 1 'Lupardus, P.J.' 2 # _citation.id primary _citation.title 'Design and evaluation of novel 8-oxo-pyridopyrimidine Jak1/2 inhibitors.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 23 _citation.page_first 5923 _citation.page_last 5930 _citation.year 2013 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24042009 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2013.08.082 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Labadie, S.' 1 primary 'Barrett, K.' 2 primary 'Blair, W.S.' 3 primary 'Chang, C.' 4 primary 'Deshmukh, G.' 5 primary 'Eigenbrot, C.' 6 primary 'Gibbons, P.' 7 primary 'Johnson, A.' 8 primary 'Kenny, J.R.' 9 primary 'Kohli, P.B.' 10 primary 'Liimatta, M.' 11 primary 'Lupardus, P.J.' 12 primary 'Shia, S.' 13 primary 'Steffek, M.' 14 primary 'Ubhayakar, S.' 15 primary 'Abbema, A.V.' 16 primary 'Zak, M.' 17 # _cell.entry_id 4K6Z _cell.length_a 168.574 _cell.length_b 42.701 _cell.length_c 44.301 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4K6Z _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein kinase JAK1' 34746.594 1 2.7.10.2 ? 'Jak1 kinase domain, UNP residues 854-1154' ? 2 non-polymer syn '(1R,2S)-2-{[8-oxo-2-(1H-pyrazol-4-yl)-5,8-dihydropyrido[3,4-d]pyrimidin-4-yl]amino}cyclopentanecarbonitrile' 321.337 1 ? ? ? ? 3 water nat water 18.015 28 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Janus kinase 1, JAK-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GDIVSEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE SEHQVKIGDFGLTKAIETDKE(PTR)(PTR)TVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP MALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK ; _entity_poly.pdbx_seq_one_letter_code_can ;GDIVSEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE SEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMI GPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASP n 1 3 ILE n 1 4 VAL n 1 5 SER n 1 6 GLU n 1 7 LYS n 1 8 LYS n 1 9 PRO n 1 10 ALA n 1 11 THR n 1 12 GLU n 1 13 VAL n 1 14 ASP n 1 15 PRO n 1 16 THR n 1 17 HIS n 1 18 PHE n 1 19 GLU n 1 20 LYS n 1 21 ARG n 1 22 PHE n 1 23 LEU n 1 24 LYS n 1 25 ARG n 1 26 ILE n 1 27 ARG n 1 28 ASP n 1 29 LEU n 1 30 GLY n 1 31 GLU n 1 32 GLY n 1 33 HIS n 1 34 PHE n 1 35 GLY n 1 36 LYS n 1 37 VAL n 1 38 GLU n 1 39 LEU n 1 40 CYS n 1 41 ARG n 1 42 TYR n 1 43 ASP n 1 44 PRO n 1 45 GLU n 1 46 GLY n 1 47 ASP n 1 48 ASN n 1 49 THR n 1 50 GLY n 1 51 GLU n 1 52 GLN n 1 53 VAL n 1 54 ALA n 1 55 VAL n 1 56 LYS n 1 57 SER n 1 58 LEU n 1 59 LYS n 1 60 PRO n 1 61 GLU n 1 62 SER n 1 63 GLY n 1 64 GLY n 1 65 ASN n 1 66 HIS n 1 67 ILE n 1 68 ALA n 1 69 ASP n 1 70 LEU n 1 71 LYS n 1 72 LYS n 1 73 GLU n 1 74 ILE n 1 75 GLU n 1 76 ILE n 1 77 LEU n 1 78 ARG n 1 79 ASN n 1 80 LEU n 1 81 TYR n 1 82 HIS n 1 83 GLU n 1 84 ASN n 1 85 ILE n 1 86 VAL n 1 87 LYS n 1 88 TYR n 1 89 LYS n 1 90 GLY n 1 91 ILE n 1 92 CYS n 1 93 THR n 1 94 GLU n 1 95 ASP n 1 96 GLY n 1 97 GLY n 1 98 ASN n 1 99 GLY n 1 100 ILE n 1 101 LYS n 1 102 LEU n 1 103 ILE n 1 104 MET n 1 105 GLU n 1 106 PHE n 1 107 LEU n 1 108 PRO n 1 109 SER n 1 110 GLY n 1 111 SER n 1 112 LEU n 1 113 LYS n 1 114 GLU n 1 115 TYR n 1 116 LEU n 1 117 PRO n 1 118 LYS n 1 119 ASN n 1 120 LYS n 1 121 ASN n 1 122 LYS n 1 123 ILE n 1 124 ASN n 1 125 LEU n 1 126 LYS n 1 127 GLN n 1 128 GLN n 1 129 LEU n 1 130 LYS n 1 131 TYR n 1 132 ALA n 1 133 VAL n 1 134 GLN n 1 135 ILE n 1 136 CYS n 1 137 LYS n 1 138 GLY n 1 139 MET n 1 140 ASP n 1 141 TYR n 1 142 LEU n 1 143 GLY n 1 144 SER n 1 145 ARG n 1 146 GLN n 1 147 TYR n 1 148 VAL n 1 149 HIS n 1 150 ARG n 1 151 ASP n 1 152 LEU n 1 153 ALA n 1 154 ALA n 1 155 ARG n 1 156 ASN n 1 157 VAL n 1 158 LEU n 1 159 VAL n 1 160 GLU n 1 161 SER n 1 162 GLU n 1 163 HIS n 1 164 GLN n 1 165 VAL n 1 166 LYS n 1 167 ILE n 1 168 GLY n 1 169 ASP n 1 170 PHE n 1 171 GLY n 1 172 LEU n 1 173 THR n 1 174 LYS n 1 175 ALA n 1 176 ILE n 1 177 GLU n 1 178 THR n 1 179 ASP n 1 180 LYS n 1 181 GLU n 1 182 PTR n 1 183 PTR n 1 184 THR n 1 185 VAL n 1 186 LYS n 1 187 ASP n 1 188 ASP n 1 189 ARG n 1 190 ASP n 1 191 SER n 1 192 PRO n 1 193 VAL n 1 194 PHE n 1 195 TRP n 1 196 TYR n 1 197 ALA n 1 198 PRO n 1 199 GLU n 1 200 CYS n 1 201 LEU n 1 202 MET n 1 203 GLN n 1 204 SER n 1 205 LYS n 1 206 PHE n 1 207 TYR n 1 208 ILE n 1 209 ALA n 1 210 SER n 1 211 ASP n 1 212 VAL n 1 213 TRP n 1 214 SER n 1 215 PHE n 1 216 GLY n 1 217 VAL n 1 218 THR n 1 219 LEU n 1 220 HIS n 1 221 GLU n 1 222 LEU n 1 223 LEU n 1 224 THR n 1 225 TYR n 1 226 CYS n 1 227 ASP n 1 228 SER n 1 229 ASP n 1 230 SER n 1 231 SER n 1 232 PRO n 1 233 MET n 1 234 ALA n 1 235 LEU n 1 236 PHE n 1 237 LEU n 1 238 LYS n 1 239 MET n 1 240 ILE n 1 241 GLY n 1 242 PRO n 1 243 THR n 1 244 HIS n 1 245 GLY n 1 246 GLN n 1 247 MET n 1 248 THR n 1 249 VAL n 1 250 THR n 1 251 ARG n 1 252 LEU n 1 253 VAL n 1 254 ASN n 1 255 THR n 1 256 LEU n 1 257 LYS n 1 258 GLU n 1 259 GLY n 1 260 LYS n 1 261 ARG n 1 262 LEU n 1 263 PRO n 1 264 CYS n 1 265 PRO n 1 266 PRO n 1 267 ASN n 1 268 CYS n 1 269 PRO n 1 270 ASP n 1 271 GLU n 1 272 VAL n 1 273 TYR n 1 274 GLN n 1 275 LEU n 1 276 MET n 1 277 ARG n 1 278 LYS n 1 279 CYS n 1 280 TRP n 1 281 GLU n 1 282 PHE n 1 283 GLN n 1 284 PRO n 1 285 SER n 1 286 ASN n 1 287 ARG n 1 288 THR n 1 289 SER n 1 290 PHE n 1 291 GLN n 1 292 ASN n 1 293 LEU n 1 294 ILE n 1 295 GLU n 1 296 GLY n 1 297 PHE n 1 298 GLU n 1 299 ALA n 1 300 LEU n 1 301 LEU n 1 302 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'JAK1, JAK1A, JAK1B' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code JAK1_HUMAN _struct_ref.pdbx_db_accession P23458 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DIVSEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLY HENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVES EHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIG PTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK ; _struct_ref.pdbx_align_begin 854 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4K6Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 302 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P23458 _struct_ref_seq.db_align_beg 854 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 854 _struct_ref_seq.pdbx_auth_seq_align_end 1154 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4K6Z _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P23458 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 853 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1Q3 non-polymer . '(1R,2S)-2-{[8-oxo-2-(1H-pyrazol-4-yl)-5,8-dihydropyrido[3,4-d]pyrimidin-4-yl]amino}cyclopentanecarbonitrile' ? 'C16 H15 N7 O' 321.337 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4K6Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '0.1 M MES pH 5-6 and 25-35% PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-09-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.977 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.977 # _reflns.entry_id 4K6Z _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 84.29 _reflns.d_resolution_high 2.73 _reflns.number_obs 8938 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 55.63 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.73 _reflns_shell.d_res_low 2.88 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs 0.495 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1258 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4K6Z _refine.ls_number_reflns_obs 8906 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.85 _refine.ls_d_res_high 2.73 _refine.ls_percent_reflns_obs 98.24 _refine.ls_R_factor_obs 0.2438 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2381 _refine.ls_R_factor_R_free 0.2971 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.93 _refine.ls_number_reflns_R_free 884 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.8967 _refine.correlation_coeff_Fo_to_Fc_free 0.8228 _refine.B_iso_mean 52.97 _refine.aniso_B[1][1] 7.6521 _refine.aniso_B[2][2] 2.8031 _refine.aniso_B[3][3] -10.4552 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4K6Z _refine_analyze.Luzzati_coordinate_error_obs 0.427 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2291 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 2343 _refine_hist.d_res_high 2.73 _refine_hist.d_res_low 42.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.010 ? 2.00 2368 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.19 ? 2.00 3194 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 844 SINUSOIDAL 'X-RAY DIFFRACTION' t_incorr_chiral_ct ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 60 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 352 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 2368 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_omega_torsion 2.63 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 20.97 ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 292 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 2739 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.73 _refine_ls_shell.d_res_low 3.05 _refine_ls_shell.number_reflns_R_work 2187 _refine_ls_shell.R_factor_R_work 0.3088 _refine_ls_shell.percent_reflns_obs 98.24 _refine_ls_shell.R_factor_R_free 0.4007 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 10.11 _refine_ls_shell.number_reflns_R_free 246 _refine_ls_shell.number_reflns_all 2433 _refine_ls_shell.R_factor_all 0.3180 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4K6Z _struct.title 'The Jak1 kinase domain in complex with compound 37' _struct.pdbx_descriptor 'Tyrosine-protein kinase JAK1 (E.C.2.7.10.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4K6Z _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR' _struct_keywords.text 'kinase, TRANSFERASE-TRANSFERASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 67 ? ASN A 79 ? ILE A 919 ASN A 931 1 ? 13 HELX_P HELX_P2 2 SER A 111 ? ASN A 119 ? SER A 963 ASN A 971 1 ? 9 HELX_P HELX_P3 3 ASN A 124 ? ARG A 145 ? ASN A 976 ARG A 997 1 ? 22 HELX_P HELX_P4 4 ALA A 153 ? ARG A 155 ? ALA A 1005 ARG A 1007 5 ? 3 HELX_P HELX_P5 5 PRO A 192 ? TYR A 196 ? PRO A 1044 TYR A 1048 5 ? 5 HELX_P HELX_P6 6 ALA A 197 ? GLN A 203 ? ALA A 1049 GLN A 1055 1 ? 7 HELX_P HELX_P7 7 ILE A 208 ? THR A 224 ? ILE A 1060 THR A 1076 1 ? 17 HELX_P HELX_P8 8 ASP A 227 ? SER A 230 ? ASP A 1079 SER A 1082 5 ? 4 HELX_P HELX_P9 9 SER A 231 ? MET A 239 ? SER A 1083 MET A 1091 1 ? 9 HELX_P HELX_P10 10 MET A 247 ? GLY A 259 ? MET A 1099 GLY A 1111 1 ? 13 HELX_P HELX_P11 11 PRO A 269 ? LYS A 278 ? PRO A 1121 LYS A 1130 1 ? 10 HELX_P HELX_P12 12 CYS A 279 ? GLU A 281 ? CYS A 1131 GLU A 1133 5 ? 3 HELX_P HELX_P13 13 SER A 289 ? LYS A 302 ? SER A 1141 LYS A 1154 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 181 C ? ? ? 1_555 A PTR 182 N ? ? A GLU 1033 A PTR 1034 1_555 ? ? ? ? ? ? ? 1.344 ? covale2 covale ? ? A PTR 182 C ? ? ? 1_555 A PTR 183 N ? ? A PTR 1034 A PTR 1035 1_555 ? ? ? ? ? ? ? 1.351 ? covale3 covale ? ? A PTR 183 C ? ? ? 1_555 A THR 184 N ? ? A PTR 1035 A THR 1036 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 23 ? GLU A 31 ? LEU A 875 GLU A 883 A 2 GLY A 35 ? TYR A 42 ? GLY A 887 TYR A 894 A 3 GLU A 51 ? LEU A 58 ? GLU A 903 LEU A 910 A 4 LYS A 101 ? MET A 104 ? LYS A 953 MET A 956 A 5 TYR A 88 ? CYS A 92 ? TYR A 940 CYS A 944 B 1 TYR A 147 ? VAL A 148 ? TYR A 999 VAL A 1000 B 2 LYS A 174 ? ALA A 175 ? LYS A 1026 ALA A 1027 C 1 VAL A 157 ? SER A 161 ? VAL A 1009 SER A 1013 C 2 GLN A 164 ? ILE A 167 ? GLN A 1016 ILE A 1019 D 1 PTR A 182 ? THR A 184 ? PTR A 1034 THR A 1036 D 2 LYS A 205 ? TYR A 207 ? LYS A 1057 TYR A 1059 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 30 ? N GLY A 882 O VAL A 37 ? O VAL A 889 A 2 3 N CYS A 40 ? N CYS A 892 O VAL A 53 ? O VAL A 905 A 3 4 N ALA A 54 ? N ALA A 906 O MET A 104 ? O MET A 956 A 4 5 O ILE A 103 ? O ILE A 955 N LYS A 89 ? N LYS A 941 B 1 2 N VAL A 148 ? N VAL A 1000 O LYS A 174 ? O LYS A 1026 C 1 2 N LEU A 158 ? N LEU A 1010 O LYS A 166 ? O LYS A 1018 D 1 2 N PTR A 183 ? N PTR A 1035 O PHE A 206 ? O PHE A 1058 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'BINDING SITE FOR RESIDUE 1Q3 A 1201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 LEU A 29 ? LEU A 881 . ? 1_555 ? 2 AC1 16 GLU A 31 ? GLU A 883 . ? 1_555 ? 3 AC1 16 VAL A 37 ? VAL A 889 . ? 1_555 ? 4 AC1 16 ALA A 54 ? ALA A 906 . ? 1_555 ? 5 AC1 16 GLU A 105 ? GLU A 957 . ? 1_555 ? 6 AC1 16 PHE A 106 ? PHE A 958 . ? 1_555 ? 7 AC1 16 LEU A 107 ? LEU A 959 . ? 1_555 ? 8 AC1 16 GLY A 110 ? GLY A 962 . ? 1_555 ? 9 AC1 16 SER A 111 ? SER A 963 . ? 1_555 ? 10 AC1 16 GLU A 114 ? GLU A 966 . ? 1_555 ? 11 AC1 16 ARG A 155 ? ARG A 1007 . ? 1_555 ? 12 AC1 16 ASN A 156 ? ASN A 1008 . ? 1_555 ? 13 AC1 16 LEU A 158 ? LEU A 1010 . ? 1_555 ? 14 AC1 16 GLY A 168 ? GLY A 1020 . ? 1_555 ? 15 AC1 16 ASP A 169 ? ASP A 1021 . ? 1_555 ? 16 AC1 16 HOH C . ? HOH A 1305 . ? 1_555 ? # _database_PDB_matrix.entry_id 4K6Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4K6Z _atom_sites.fract_transf_matrix[1][1] 0.005932 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023419 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022573 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 853 ? ? ? A . n A 1 2 ASP 2 854 ? ? ? A . n A 1 3 ILE 3 855 ? ? ? A . n A 1 4 VAL 4 856 ? ? ? A . n A 1 5 SER 5 857 ? ? ? A . n A 1 6 GLU 6 858 ? ? ? A . n A 1 7 LYS 7 859 ? ? ? A . n A 1 8 LYS 8 860 ? ? ? A . n A 1 9 PRO 9 861 ? ? ? A . n A 1 10 ALA 10 862 ? ? ? A . n A 1 11 THR 11 863 ? ? ? A . n A 1 12 GLU 12 864 ? ? ? A . n A 1 13 VAL 13 865 865 VAL VAL A . n A 1 14 ASP 14 866 866 ASP ASP A . n A 1 15 PRO 15 867 867 PRO PRO A . n A 1 16 THR 16 868 868 THR THR A . n A 1 17 HIS 17 869 869 HIS HIS A . n A 1 18 PHE 18 870 870 PHE PHE A . n A 1 19 GLU 19 871 871 GLU GLU A . n A 1 20 LYS 20 872 872 LYS LYS A . n A 1 21 ARG 21 873 873 ARG ARG A . n A 1 22 PHE 22 874 874 PHE PHE A . n A 1 23 LEU 23 875 875 LEU LEU A . n A 1 24 LYS 24 876 876 LYS LYS A . n A 1 25 ARG 25 877 877 ARG ARG A . n A 1 26 ILE 26 878 878 ILE ILE A . n A 1 27 ARG 27 879 879 ARG ARG A . n A 1 28 ASP 28 880 880 ASP ASP A . n A 1 29 LEU 29 881 881 LEU LEU A . n A 1 30 GLY 30 882 882 GLY GLY A . n A 1 31 GLU 31 883 883 GLU GLU A . n A 1 32 GLY 32 884 884 GLY GLY A . n A 1 33 HIS 33 885 885 HIS HIS A . n A 1 34 PHE 34 886 886 PHE PHE A . n A 1 35 GLY 35 887 887 GLY GLY A . n A 1 36 LYS 36 888 888 LYS LYS A . n A 1 37 VAL 37 889 889 VAL VAL A . n A 1 38 GLU 38 890 890 GLU GLU A . n A 1 39 LEU 39 891 891 LEU LEU A . n A 1 40 CYS 40 892 892 CYS CYS A . n A 1 41 ARG 41 893 893 ARG ARG A . n A 1 42 TYR 42 894 894 TYR TYR A . n A 1 43 ASP 43 895 895 ASP ASP A . n A 1 44 PRO 44 896 896 PRO PRO A . n A 1 45 GLU 45 897 897 GLU GLU A . n A 1 46 GLY 46 898 898 GLY GLY A . n A 1 47 ASP 47 899 899 ASP ASP A . n A 1 48 ASN 48 900 900 ASN ASN A . n A 1 49 THR 49 901 901 THR THR A . n A 1 50 GLY 50 902 902 GLY GLY A . n A 1 51 GLU 51 903 903 GLU GLU A . n A 1 52 GLN 52 904 904 GLN GLN A . n A 1 53 VAL 53 905 905 VAL VAL A . n A 1 54 ALA 54 906 906 ALA ALA A . n A 1 55 VAL 55 907 907 VAL VAL A . n A 1 56 LYS 56 908 908 LYS LYS A . n A 1 57 SER 57 909 909 SER SER A . n A 1 58 LEU 58 910 910 LEU LEU A . n A 1 59 LYS 59 911 911 LYS LYS A . n A 1 60 PRO 60 912 912 PRO PRO A . n A 1 61 GLU 61 913 ? ? ? A . n A 1 62 SER 62 914 ? ? ? A . n A 1 63 GLY 63 915 ? ? ? A . n A 1 64 GLY 64 916 ? ? ? A . n A 1 65 ASN 65 917 ? ? ? A . n A 1 66 HIS 66 918 918 HIS HIS A . n A 1 67 ILE 67 919 919 ILE ILE A . n A 1 68 ALA 68 920 920 ALA ALA A . n A 1 69 ASP 69 921 921 ASP ASP A . n A 1 70 LEU 70 922 922 LEU LEU A . n A 1 71 LYS 71 923 923 LYS LYS A . n A 1 72 LYS 72 924 924 LYS LYS A . n A 1 73 GLU 73 925 925 GLU GLU A . n A 1 74 ILE 74 926 926 ILE ILE A . n A 1 75 GLU 75 927 927 GLU GLU A . n A 1 76 ILE 76 928 928 ILE ILE A . n A 1 77 LEU 77 929 929 LEU LEU A . n A 1 78 ARG 78 930 930 ARG ARG A . n A 1 79 ASN 79 931 931 ASN ASN A . n A 1 80 LEU 80 932 932 LEU LEU A . n A 1 81 TYR 81 933 933 TYR TYR A . n A 1 82 HIS 82 934 934 HIS HIS A . n A 1 83 GLU 83 935 935 GLU GLU A . n A 1 84 ASN 84 936 936 ASN ASN A . n A 1 85 ILE 85 937 937 ILE ILE A . n A 1 86 VAL 86 938 938 VAL VAL A . n A 1 87 LYS 87 939 939 LYS LYS A . n A 1 88 TYR 88 940 940 TYR TYR A . n A 1 89 LYS 89 941 941 LYS LYS A . n A 1 90 GLY 90 942 942 GLY GLY A . n A 1 91 ILE 91 943 943 ILE ILE A . n A 1 92 CYS 92 944 944 CYS CYS A . n A 1 93 THR 93 945 945 THR THR A . n A 1 94 GLU 94 946 946 GLU GLU A . n A 1 95 ASP 95 947 ? ? ? A . n A 1 96 GLY 96 948 ? ? ? A . n A 1 97 GLY 97 949 ? ? ? A . n A 1 98 ASN 98 950 ? ? ? A . n A 1 99 GLY 99 951 951 GLY GLY A . n A 1 100 ILE 100 952 952 ILE ILE A . n A 1 101 LYS 101 953 953 LYS LYS A . n A 1 102 LEU 102 954 954 LEU LEU A . n A 1 103 ILE 103 955 955 ILE ILE A . n A 1 104 MET 104 956 956 MET MET A . n A 1 105 GLU 105 957 957 GLU GLU A . n A 1 106 PHE 106 958 958 PHE PHE A . n A 1 107 LEU 107 959 959 LEU LEU A . n A 1 108 PRO 108 960 960 PRO PRO A . n A 1 109 SER 109 961 961 SER SER A . n A 1 110 GLY 110 962 962 GLY GLY A . n A 1 111 SER 111 963 963 SER SER A . n A 1 112 LEU 112 964 964 LEU LEU A . n A 1 113 LYS 113 965 965 LYS LYS A . n A 1 114 GLU 114 966 966 GLU GLU A . n A 1 115 TYR 115 967 967 TYR TYR A . n A 1 116 LEU 116 968 968 LEU LEU A . n A 1 117 PRO 117 969 969 PRO PRO A . n A 1 118 LYS 118 970 970 LYS LYS A . n A 1 119 ASN 119 971 971 ASN ASN A . n A 1 120 LYS 120 972 972 LYS LYS A . n A 1 121 ASN 121 973 973 ASN ASN A . n A 1 122 LYS 122 974 974 LYS LYS A . n A 1 123 ILE 123 975 975 ILE ILE A . n A 1 124 ASN 124 976 976 ASN ASN A . n A 1 125 LEU 125 977 977 LEU LEU A . n A 1 126 LYS 126 978 978 LYS LYS A . n A 1 127 GLN 127 979 979 GLN GLN A . n A 1 128 GLN 128 980 980 GLN GLN A . n A 1 129 LEU 129 981 981 LEU LEU A . n A 1 130 LYS 130 982 982 LYS LYS A . n A 1 131 TYR 131 983 983 TYR TYR A . n A 1 132 ALA 132 984 984 ALA ALA A . n A 1 133 VAL 133 985 985 VAL VAL A . n A 1 134 GLN 134 986 986 GLN GLN A . n A 1 135 ILE 135 987 987 ILE ILE A . n A 1 136 CYS 136 988 988 CYS CYS A . n A 1 137 LYS 137 989 989 LYS LYS A . n A 1 138 GLY 138 990 990 GLY GLY A . n A 1 139 MET 139 991 991 MET MET A . n A 1 140 ASP 140 992 992 ASP ASP A . n A 1 141 TYR 141 993 993 TYR TYR A . n A 1 142 LEU 142 994 994 LEU LEU A . n A 1 143 GLY 143 995 995 GLY GLY A . n A 1 144 SER 144 996 996 SER SER A . n A 1 145 ARG 145 997 997 ARG ARG A . n A 1 146 GLN 146 998 998 GLN GLN A . n A 1 147 TYR 147 999 999 TYR TYR A . n A 1 148 VAL 148 1000 1000 VAL VAL A . n A 1 149 HIS 149 1001 1001 HIS HIS A . n A 1 150 ARG 150 1002 1002 ARG ARG A . n A 1 151 ASP 151 1003 1003 ASP ASP A . n A 1 152 LEU 152 1004 1004 LEU LEU A . n A 1 153 ALA 153 1005 1005 ALA ALA A . n A 1 154 ALA 154 1006 1006 ALA ALA A . n A 1 155 ARG 155 1007 1007 ARG ARG A . n A 1 156 ASN 156 1008 1008 ASN ASN A . n A 1 157 VAL 157 1009 1009 VAL VAL A . n A 1 158 LEU 158 1010 1010 LEU LEU A . n A 1 159 VAL 159 1011 1011 VAL VAL A . n A 1 160 GLU 160 1012 1012 GLU GLU A . n A 1 161 SER 161 1013 1013 SER SER A . n A 1 162 GLU 162 1014 1014 GLU GLU A . n A 1 163 HIS 163 1015 1015 HIS HIS A . n A 1 164 GLN 164 1016 1016 GLN GLN A . n A 1 165 VAL 165 1017 1017 VAL VAL A . n A 1 166 LYS 166 1018 1018 LYS LYS A . n A 1 167 ILE 167 1019 1019 ILE ILE A . n A 1 168 GLY 168 1020 1020 GLY GLY A . n A 1 169 ASP 169 1021 1021 ASP ASP A . n A 1 170 PHE 170 1022 1022 PHE PHE A . n A 1 171 GLY 171 1023 1023 GLY GLY A . n A 1 172 LEU 172 1024 1024 LEU LEU A . n A 1 173 THR 173 1025 1025 THR THR A . n A 1 174 LYS 174 1026 1026 LYS LYS A . n A 1 175 ALA 175 1027 1027 ALA ALA A . n A 1 176 ILE 176 1028 1028 ILE ILE A . n A 1 177 GLU 177 1029 1029 GLU GLU A . n A 1 178 THR 178 1030 1030 THR THR A . n A 1 179 ASP 179 1031 1031 ASP ASP A . n A 1 180 LYS 180 1032 1032 LYS LYS A . n A 1 181 GLU 181 1033 1033 GLU GLU A . n A 1 182 PTR 182 1034 1034 PTR PTR A . n A 1 183 PTR 183 1035 1035 PTR PTR A . n A 1 184 THR 184 1036 1036 THR THR A . n A 1 185 VAL 185 1037 1037 VAL VAL A . n A 1 186 LYS 186 1038 1038 LYS LYS A . n A 1 187 ASP 187 1039 1039 ASP ASP A . n A 1 188 ASP 188 1040 1040 ASP ASP A . n A 1 189 ARG 189 1041 1041 ARG ARG A . n A 1 190 ASP 190 1042 1042 ASP ASP A . n A 1 191 SER 191 1043 1043 SER SER A . n A 1 192 PRO 192 1044 1044 PRO PRO A . n A 1 193 VAL 193 1045 1045 VAL VAL A . n A 1 194 PHE 194 1046 1046 PHE PHE A . n A 1 195 TRP 195 1047 1047 TRP TRP A . n A 1 196 TYR 196 1048 1048 TYR TYR A . n A 1 197 ALA 197 1049 1049 ALA ALA A . n A 1 198 PRO 198 1050 1050 PRO PRO A . n A 1 199 GLU 199 1051 1051 GLU GLU A . n A 1 200 CYS 200 1052 1052 CYS CYS A . n A 1 201 LEU 201 1053 1053 LEU LEU A . n A 1 202 MET 202 1054 1054 MET MET A . n A 1 203 GLN 203 1055 1055 GLN GLN A . n A 1 204 SER 204 1056 1056 SER SER A . n A 1 205 LYS 205 1057 1057 LYS LYS A . n A 1 206 PHE 206 1058 1058 PHE PHE A . n A 1 207 TYR 207 1059 1059 TYR TYR A . n A 1 208 ILE 208 1060 1060 ILE ILE A . n A 1 209 ALA 209 1061 1061 ALA ALA A . n A 1 210 SER 210 1062 1062 SER SER A . n A 1 211 ASP 211 1063 1063 ASP ASP A . n A 1 212 VAL 212 1064 1064 VAL VAL A . n A 1 213 TRP 213 1065 1065 TRP TRP A . n A 1 214 SER 214 1066 1066 SER SER A . n A 1 215 PHE 215 1067 1067 PHE PHE A . n A 1 216 GLY 216 1068 1068 GLY GLY A . n A 1 217 VAL 217 1069 1069 VAL VAL A . n A 1 218 THR 218 1070 1070 THR THR A . n A 1 219 LEU 219 1071 1071 LEU LEU A . n A 1 220 HIS 220 1072 1072 HIS HIS A . n A 1 221 GLU 221 1073 1073 GLU GLU A . n A 1 222 LEU 222 1074 1074 LEU LEU A . n A 1 223 LEU 223 1075 1075 LEU LEU A . n A 1 224 THR 224 1076 1076 THR THR A . n A 1 225 TYR 225 1077 1077 TYR TYR A . n A 1 226 CYS 226 1078 1078 CYS CYS A . n A 1 227 ASP 227 1079 1079 ASP ASP A . n A 1 228 SER 228 1080 1080 SER SER A . n A 1 229 ASP 229 1081 1081 ASP ASP A . n A 1 230 SER 230 1082 1082 SER SER A . n A 1 231 SER 231 1083 1083 SER SER A . n A 1 232 PRO 232 1084 1084 PRO PRO A . n A 1 233 MET 233 1085 1085 MET MET A . n A 1 234 ALA 234 1086 1086 ALA ALA A . n A 1 235 LEU 235 1087 1087 LEU LEU A . n A 1 236 PHE 236 1088 1088 PHE PHE A . n A 1 237 LEU 237 1089 1089 LEU LEU A . n A 1 238 LYS 238 1090 1090 LYS LYS A . n A 1 239 MET 239 1091 1091 MET MET A . n A 1 240 ILE 240 1092 1092 ILE ILE A . n A 1 241 GLY 241 1093 1093 GLY GLY A . n A 1 242 PRO 242 1094 1094 PRO PRO A . n A 1 243 THR 243 1095 1095 THR THR A . n A 1 244 HIS 244 1096 1096 HIS HIS A . n A 1 245 GLY 245 1097 1097 GLY GLY A . n A 1 246 GLN 246 1098 1098 GLN GLN A . n A 1 247 MET 247 1099 1099 MET MET A . n A 1 248 THR 248 1100 1100 THR THR A . n A 1 249 VAL 249 1101 1101 VAL VAL A . n A 1 250 THR 250 1102 1102 THR THR A . n A 1 251 ARG 251 1103 1103 ARG ARG A . n A 1 252 LEU 252 1104 1104 LEU LEU A . n A 1 253 VAL 253 1105 1105 VAL VAL A . n A 1 254 ASN 254 1106 1106 ASN ASN A . n A 1 255 THR 255 1107 1107 THR THR A . n A 1 256 LEU 256 1108 1108 LEU LEU A . n A 1 257 LYS 257 1109 1109 LYS LYS A . n A 1 258 GLU 258 1110 1110 GLU GLU A . n A 1 259 GLY 259 1111 1111 GLY GLY A . n A 1 260 LYS 260 1112 1112 LYS LYS A . n A 1 261 ARG 261 1113 1113 ARG ARG A . n A 1 262 LEU 262 1114 1114 LEU LEU A . n A 1 263 PRO 263 1115 1115 PRO PRO A . n A 1 264 CYS 264 1116 1116 CYS CYS A . n A 1 265 PRO 265 1117 1117 PRO PRO A . n A 1 266 PRO 266 1118 1118 PRO PRO A . n A 1 267 ASN 267 1119 1119 ASN ASN A . n A 1 268 CYS 268 1120 1120 CYS CYS A . n A 1 269 PRO 269 1121 1121 PRO PRO A . n A 1 270 ASP 270 1122 1122 ASP ASP A . n A 1 271 GLU 271 1123 1123 GLU GLU A . n A 1 272 VAL 272 1124 1124 VAL VAL A . n A 1 273 TYR 273 1125 1125 TYR TYR A . n A 1 274 GLN 274 1126 1126 GLN GLN A . n A 1 275 LEU 275 1127 1127 LEU LEU A . n A 1 276 MET 276 1128 1128 MET MET A . n A 1 277 ARG 277 1129 1129 ARG ARG A . n A 1 278 LYS 278 1130 1130 LYS LYS A . n A 1 279 CYS 279 1131 1131 CYS CYS A . n A 1 280 TRP 280 1132 1132 TRP TRP A . n A 1 281 GLU 281 1133 1133 GLU GLU A . n A 1 282 PHE 282 1134 1134 PHE PHE A . n A 1 283 GLN 283 1135 1135 GLN GLN A . n A 1 284 PRO 284 1136 1136 PRO PRO A . n A 1 285 SER 285 1137 1137 SER SER A . n A 1 286 ASN 286 1138 1138 ASN ASN A . n A 1 287 ARG 287 1139 1139 ARG ARG A . n A 1 288 THR 288 1140 1140 THR THR A . n A 1 289 SER 289 1141 1141 SER SER A . n A 1 290 PHE 290 1142 1142 PHE PHE A . n A 1 291 GLN 291 1143 1143 GLN GLN A . n A 1 292 ASN 292 1144 1144 ASN ASN A . n A 1 293 LEU 293 1145 1145 LEU LEU A . n A 1 294 ILE 294 1146 1146 ILE ILE A . n A 1 295 GLU 295 1147 1147 GLU GLU A . n A 1 296 GLY 296 1148 1148 GLY GLY A . n A 1 297 PHE 297 1149 1149 PHE PHE A . n A 1 298 GLU 298 1150 1150 GLU GLU A . n A 1 299 ALA 299 1151 1151 ALA ALA A . n A 1 300 LEU 300 1152 1152 LEU LEU A . n A 1 301 LEU 301 1153 1153 LEU LEU A . n A 1 302 LYS 302 1154 1154 LYS LYS A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A PTR 182 A PTR 1034 ? TYR O-PHOSPHOTYROSINE 2 A PTR 183 A PTR 1035 ? TYR O-PHOSPHOTYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-02 2 'Structure model' 1 1 2013-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 PHASER phasing . ? 2 BUSTER refinement 2.11.4 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 878 ? ? -125.55 -59.05 2 1 ASP A 899 ? ? -158.78 34.13 3 1 GLN A 998 ? ? 46.10 72.23 4 1 ASP A 1003 ? ? -150.75 38.10 5 1 ASP A 1031 ? ? 62.71 -7.14 6 1 LYS A 1038 ? ? -84.42 -95.81 7 1 ASP A 1040 ? ? -145.65 42.14 8 1 MET A 1054 ? ? -96.03 -62.06 9 1 SER A 1082 ? ? -140.75 27.92 10 1 ILE A 1092 ? ? -133.22 -37.10 11 1 PRO A 1094 ? ? -92.87 44.13 12 1 THR A 1095 ? ? -144.09 27.88 13 1 ASN A 1119 ? ? 85.08 26.38 14 1 PHE A 1134 ? ? -32.67 -31.05 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 853 ? A GLY 1 2 1 Y 1 A ASP 854 ? A ASP 2 3 1 Y 1 A ILE 855 ? A ILE 3 4 1 Y 1 A VAL 856 ? A VAL 4 5 1 Y 1 A SER 857 ? A SER 5 6 1 Y 1 A GLU 858 ? A GLU 6 7 1 Y 1 A LYS 859 ? A LYS 7 8 1 Y 1 A LYS 860 ? A LYS 8 9 1 Y 1 A PRO 861 ? A PRO 9 10 1 Y 1 A ALA 862 ? A ALA 10 11 1 Y 1 A THR 863 ? A THR 11 12 1 Y 1 A GLU 864 ? A GLU 12 13 1 Y 1 A GLU 913 ? A GLU 61 14 1 Y 1 A SER 914 ? A SER 62 15 1 Y 1 A GLY 915 ? A GLY 63 16 1 Y 1 A GLY 916 ? A GLY 64 17 1 Y 1 A ASN 917 ? A ASN 65 18 1 Y 1 A ASP 947 ? A ASP 95 19 1 Y 1 A GLY 948 ? A GLY 96 20 1 Y 1 A GLY 949 ? A GLY 97 21 1 Y 1 A ASN 950 ? A ASN 98 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(1R,2S)-2-{[8-oxo-2-(1H-pyrazol-4-yl)-5,8-dihydropyrido[3,4-d]pyrimidin-4-yl]amino}cyclopentanecarbonitrile' 1Q3 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1Q3 1 1201 1 1Q3 DRG A . C 3 HOH 1 1301 1 HOH HOH A . C 3 HOH 2 1302 2 HOH HOH A . C 3 HOH 3 1303 3 HOH HOH A . C 3 HOH 4 1304 4 HOH HOH A . C 3 HOH 5 1305 5 HOH HOH A . C 3 HOH 6 1306 6 HOH HOH A . C 3 HOH 7 1307 7 HOH HOH A . C 3 HOH 8 1308 8 HOH HOH A . C 3 HOH 9 1309 9 HOH HOH A . C 3 HOH 10 1310 10 HOH HOH A . C 3 HOH 11 1311 11 HOH HOH A . C 3 HOH 12 1312 12 HOH HOH A . C 3 HOH 13 1313 13 HOH HOH A . C 3 HOH 14 1314 14 HOH HOH A . C 3 HOH 15 1315 15 HOH HOH A . C 3 HOH 16 1316 16 HOH HOH A . C 3 HOH 17 1317 17 HOH HOH A . C 3 HOH 18 1318 18 HOH HOH A . C 3 HOH 19 1319 19 HOH HOH A . C 3 HOH 20 1320 20 HOH HOH A . C 3 HOH 21 1321 21 HOH HOH A . C 3 HOH 22 1322 22 HOH HOH A . C 3 HOH 23 1323 23 HOH HOH A . C 3 HOH 24 1324 24 HOH HOH A . C 3 HOH 25 1325 25 HOH HOH A . C 3 HOH 26 1326 26 HOH HOH A . C 3 HOH 27 1327 27 HOH HOH A . C 3 HOH 28 1328 28 HOH HOH A . #