HEADER OXIDOREDUCTASE 17-APR-13 4K7V TITLE OYE1-W116A COMPLEXED WITH (R)-CARVONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OLD YELLOW ENZYME 1; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_COMMON: LAGER YEAST; SOURCE 4 ORGANISM_TAXID: 27292; SOURCE 5 GENE: OYE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3B KEYWDS OLD YELLOW ENZYME, CARVONE, OXIDOREDUCTASE, TIM BARREL, NADPH KEYWDS 2 DEHYDROGENASE 1 EXPDTA X-RAY DIFFRACTION AUTHOR B.SULLIVAN,Y.A.POMPEU,J.D.STEWART REVDAT 2 28-FEB-24 4K7V 1 REMARK SEQADV LINK REVDAT 1 09-OCT-13 4K7V 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,J.D.STEWART JRNL TITL X‑RAY CRYSTALLOGRAPHY REVEALS HOW SUBTLE CHANGES JRNL TITL 2 CONTROL THE ORIENTATION OF SUBSTRATE BINDING IN AN ALKENE JRNL TITL 3 REDUCTASE JRNL REF ACS CATALYSIS V. 3 2376 2013 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS400622E REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 66347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4342 - 4.7069 0.98 2181 243 0.1765 0.1821 REMARK 3 2 4.7069 - 3.7373 0.95 1996 222 0.1369 0.1622 REMARK 3 3 3.7373 - 3.2652 1.00 2063 229 0.1525 0.1751 REMARK 3 4 3.2652 - 2.9669 1.00 2067 230 0.1498 0.1741 REMARK 3 5 2.9669 - 2.7543 1.00 2046 227 0.1363 0.1485 REMARK 3 6 2.7543 - 2.5920 1.00 2037 227 0.1166 0.1381 REMARK 3 7 2.5920 - 2.4622 1.00 2011 223 0.1163 0.1476 REMARK 3 8 2.4622 - 2.3550 1.00 2030 225 0.1117 0.1496 REMARK 3 9 2.3550 - 2.2644 0.98 1968 219 0.1227 0.1599 REMARK 3 10 2.2644 - 2.1863 0.94 1923 213 0.1849 0.2656 REMARK 3 11 2.1863 - 2.1179 1.00 1999 222 0.1268 0.1478 REMARK 3 12 2.1179 - 2.0574 0.99 1993 221 0.1308 0.1857 REMARK 3 13 2.0574 - 2.0032 0.99 1995 223 0.1305 0.1795 REMARK 3 14 2.0032 - 1.9544 0.99 1955 218 0.1429 0.1828 REMARK 3 15 1.9544 - 1.9099 0.91 1837 208 0.2832 0.3597 REMARK 3 16 1.9099 - 1.8693 0.91 1799 205 0.2159 0.2831 REMARK 3 17 1.8693 - 1.8319 0.98 1974 220 0.1516 0.1939 REMARK 3 18 1.8319 - 1.7973 0.98 1957 218 0.1295 0.2034 REMARK 3 19 1.7973 - 1.7652 0.98 1972 218 0.1161 0.1914 REMARK 3 20 1.7652 - 1.7353 0.98 1947 216 0.1101 0.1739 REMARK 3 21 1.7353 - 1.7073 0.98 1968 219 0.1128 0.2002 REMARK 3 22 1.7073 - 1.6810 0.99 1966 219 0.1143 0.1883 REMARK 3 23 1.6810 - 1.6563 0.99 1937 215 0.1234 0.2129 REMARK 3 24 1.6563 - 1.6330 0.98 1974 220 0.1199 0.2102 REMARK 3 25 1.6330 - 1.6109 0.99 2004 223 0.1209 0.1932 REMARK 3 26 1.6109 - 1.5900 0.99 1945 215 0.1219 0.2111 REMARK 3 27 1.5900 - 1.5701 0.99 1977 219 0.1254 0.1993 REMARK 3 28 1.5701 - 1.5512 0.99 1977 221 0.1348 0.2143 REMARK 3 29 1.5512 - 1.5332 1.00 1956 216 0.1522 0.2321 REMARK 3 30 1.5332 - 1.5160 0.95 1909 213 0.1753 0.2638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3350 REMARK 3 ANGLE : 1.242 4547 REMARK 3 CHIRALITY : 0.076 470 REMARK 3 PLANARITY : 0.006 594 REMARK 3 DIHEDRAL : 13.706 1251 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88560 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66347 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.516 REMARK 200 RESOLUTION RANGE LOW (A) : 35.425 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M HEPES, 30-40% PEG400, REMARK 280 PH 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.42050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.42650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.42650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.13075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.42650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.42650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.71025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.42650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.42650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.13075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.42650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.42650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.71025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.42050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 873 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 939 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 956 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 977 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 156 57.86 -144.11 REMARK 500 GLN A 376 148.59 -172.73 REMARK 500 TYR A 382 -57.88 -130.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 O REMARK 620 2 TYR A 375 O 106.8 REMARK 620 3 GLN A 376 OE1 73.6 99.0 REMARK 620 4 HOH A 703 O 95.5 94.7 164.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 931 O REMARK 620 2 HOH A 932 O 92.2 REMARK 620 3 HOH A 939 O 88.4 92.2 REMARK 620 4 HOH A 956 O 91.6 87.9 179.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 406 OH3 REMARK 620 2 1PE A 406 OH4 59.6 REMARK 620 3 1PE A 406 OH6 137.9 105.5 REMARK 620 4 1PE A 406 OH2 72.6 132.1 111.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 07V A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GE8 RELATED DB: PDB REMARK 900 OYE1-W116I COMPLEXED WITH (S)-CARVONE REMARK 900 RELATED ID: 4GXM RELATED DB: PDB REMARK 900 OYE1-W116L COMPLEXED WITH THE AROMATIC PRODUCT OF (R)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4GWE RELATED DB: PDB REMARK 900 OYE1-W116L COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 4H4I RELATED DB: PDB REMARK 900 OYE1-W116V COMPLEXED WITH THE AROMATIC PRODUCT OF (S)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4GBU RELATED DB: PDB REMARK 900 OYE1-W116A COMPLEXED WITH THE AROMATIC PRODUCT OF (S)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4H6K RELATED DB: PDB REMARK 900 OYE1-W116I REMARK 900 RELATED ID: 3TXZ RELATED DB: PDB REMARK 900 OYE1-W116Q COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 4K7Y RELATED DB: PDB REMARK 900 OYE1-W116T REMARK 900 RELATED ID: 4K8E RELATED DB: PDB REMARK 900 OYE1-W116V COMPLEXED WITH THE AROMATIC PRODUCT OF (R)-CARVONE REMARK 900 DISMUTATION REMARK 900 RELATED ID: 4K8H RELATED DB: PDB REMARK 900 OYE1-W116V COMPLEXED WITH (R)-CARVONE REMARK 900 RELATED ID: 3RND RELATED DB: PDB REMARK 900 RELATED ID: 3TX9 RELATED DB: PDB DBREF 4K7V A 0 399 UNP Q02899 OYE1_SACPS 1 400 SEQADV 4K7V ALA A 116 UNP Q02899 TRP 117 ENGINEERED MUTATION SEQRES 1 A 400 MET SER PHE VAL LYS ASP PHE LYS PRO GLN ALA LEU GLY SEQRES 2 A 400 ASP THR ASN LEU PHE LYS PRO ILE LYS ILE GLY ASN ASN SEQRES 3 A 400 GLU LEU LEU HIS ARG ALA VAL ILE PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA LEU HIS PRO GLY ASN ILE PRO ASN ARG ASP SEQRES 5 A 400 TRP ALA VAL GLU TYR TYR THR GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY ALA PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY VAL TRP SER SEQRES 8 A 400 GLU GLU GLN MET VAL GLU TRP THR LYS ILE PHE ASN ALA SEQRES 9 A 400 ILE HIS GLU LYS LYS SER PHE VAL TRP VAL GLN LEU ALA SEQRES 10 A 400 VAL LEU GLY TRP ALA ALA PHE PRO ASP ASN LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP SER ALA SER ASP ASN VAL PHE SEQRES 12 A 400 MET ASP ALA GLU GLN GLU ALA LYS ALA LYS LYS ALA ASN SEQRES 13 A 400 ASN PRO GLN HIS SER LEU THR LYS ASP GLU ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS GLU TYR VAL GLN ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 THR ARG THR ASP GLU TYR GLY GLY SER ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU VAL GLU SEQRES 19 A 400 ALA ILE GLY HIS GLU LYS VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY VAL PHE ASN SER MET SER GLY GLY ALA GLU THR SEQRES 21 A 400 GLY ILE VAL ALA GLN TYR ALA TYR VAL ALA GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASN PRO PHE LEU THR SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR GLU GLY GLY SER ASN ASP PHE SEQRES 25 A 400 VAL TYR SER ILE TRP LYS GLY PRO VAL ILE ARG ALA GLY SEQRES 26 A 400 ASN PHE ALA LEU HIS PRO GLU VAL VAL ARG GLU GLU VAL SEQRES 27 A 400 LYS ASP LYS ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL ASP ARG LEU GLU LYS GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG ASP THR PHE TYR GLN SEQRES 30 A 400 MET SER ALA HIS GLY TYR ILE ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA LEU LYS LEU GLY TRP ASP LYS LYS HET FMN A 401 50 HET MG A 402 1 HET CL A 403 1 HET 07V A 404 25 HET NA A 405 1 HET 1PE A 406 16 HET NA A 407 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM 07V (5R)-2-METHYL-5-(PROP-1-EN-2-YL)CYCLOHEX-2-EN-1-ONE HETNAM NA SODIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN 07V R-CARVONE HETSYN 1PE PEG400 FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MG MG 2+ FORMUL 4 CL CL 1- FORMUL 5 07V C10 H14 O FORMUL 6 NA 2(NA 1+) FORMUL 7 1PE C10 H22 O6 FORMUL 9 HOH *500(H2 O) HELIX 1 1 THR A 14 LYS A 18 5 5 HELIX 2 2 TRP A 52 ALA A 61 1 10 HELIX 3 3 SER A 76 GLY A 80 5 5 HELIX 4 4 SER A 90 LYS A 107 1 18 HELIX 5 5 LEU A 118 ALA A 122 5 5 HELIX 6 6 PHE A 123 ASP A 130 1 8 HELIX 7 7 ASP A 144 ALA A 154 1 11 HELIX 8 8 THR A 162 ALA A 183 1 22 HELIX 9 9 TYR A 196 ASP A 203 1 8 HELIX 10 10 SER A 216 ALA A 221 1 6 HELIX 11 11 ALA A 221 GLY A 236 1 16 HELIX 12 12 SER A 254 GLU A 258 5 5 HELIX 13 13 GLY A 260 ALA A 278 1 19 HELIX 14 14 ASP A 310 TRP A 316 1 7 HELIX 15 15 HIS A 329 VAL A 337 1 9 HELIX 16 16 GLY A 347 ASN A 353 1 7 HELIX 17 17 ASP A 355 GLY A 363 1 9 HELIX 18 18 ASP A 370 PHE A 374 5 5 HELIX 19 19 THR A 387 LEU A 394 1 8 HELIX 20 20 GLY A 395 LYS A 399 5 5 SHEET 1 A 2 ILE A 20 ILE A 22 0 SHEET 2 A 2 ASN A 25 LEU A 27 -1 O ASN A 25 N ILE A 22 SHEET 1 B 8 ALA A 31 VAL A 32 0 SHEET 2 B 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 B 8 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 B 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 B 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 B 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 B 8 PHE A 110 ALA A 116 1 N LEU A 115 O GLU A 189 SHEET 8 B 8 MET A 67 ILE A 69 1 N ILE A 68 O TRP A 112 SHEET 1 C 8 ALA A 31 VAL A 32 0 SHEET 2 C 8 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 C 8 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 C 8 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 C 8 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 C 8 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 C 8 PHE A 110 ALA A 116 1 N LEU A 115 O GLU A 189 SHEET 8 C 8 ALA A 73 PHE A 74 1 N ALA A 73 O ALA A 116 SHEET 1 D 2 ASP A 135 SER A 136 0 SHEET 2 D 2 HIS A 159 SER A 160 1 O HIS A 159 N SER A 136 LINK O ASP A 372 NA NA A 407 1555 1555 2.41 LINK O ATYR A 375 NA NA A 407 1555 1555 2.22 LINK OE1 GLN A 376 NA NA A 407 1555 1555 2.27 LINK MG MG A 402 O HOH A 931 1555 1555 2.16 LINK MG MG A 402 O HOH A 932 1555 1555 2.14 LINK MG MG A 402 O HOH A 939 1555 1555 2.17 LINK MG MG A 402 O HOH A 956 1555 1555 2.09 LINK NA NA A 405 OH3 1PE A 406 1555 1555 2.40 LINK NA NA A 405 OH4 1PE A 406 1555 1555 2.81 LINK NA NA A 405 OH6 1PE A 406 1555 1555 2.84 LINK NA NA A 405 OH2 1PE A 406 1555 1555 2.97 LINK NA NA A 407 O HOH A 703 1555 1555 2.40 CISPEP 1 HIS A 43 PRO A 44 0 1.86 SITE 1 AC1 19 PRO A 34 PRO A 35 LEU A 36 THR A 37 SITE 2 AC1 19 GLY A 72 GLN A 114 HIS A 191 ASN A 194 SITE 3 AC1 19 ARG A 243 PRO A 295 GLY A 324 ASN A 325 SITE 4 AC1 19 GLY A 347 ARG A 348 07V A 404 HOH A 506 SITE 5 AC1 19 HOH A 512 HOH A 517 HOH A 823 SITE 1 AC2 4 HOH A 931 HOH A 932 HOH A 939 HOH A 956 SITE 1 AC3 2 ASP A 83 ASN A 126 SITE 1 AC4 8 THR A 37 TYR A 82 ALA A 116 HIS A 191 SITE 2 AC4 8 ASN A 194 TYR A 196 TYR A 375 FMN A 401 SITE 1 AC5 2 TYR A 375 1PE A 406 SITE 1 AC6 4 MET A 39 PHE A 123 TYR A 375 NA A 405 SITE 1 AC7 4 ASP A 372 TYR A 375 GLN A 376 HOH A 703 CRYST1 140.853 140.853 42.841 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023342 0.00000