HEADER TRANSFERASE/DNA 23-APR-13 4KB6 TITLE STRUCTURE OF PORCINE CYCLIC GMP AMP SYNTHASE (CGAS) IN COMPLEX WITH TITLE 2 DNA, ATP AND GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 135-495; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*CP*GP*AP*CP*GP*CP*TP*AP*GP*CP*GP*TP*CP*G)-3'); COMPND 8 CHAIN: B, C; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: 14MER DS DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIGS,SWINE,WILD BOAR; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC DNA; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS OAS-LIKE FOLD, RECEPTOR, IMMUNITY, CGAS, DOUBLE STRANDED DNA, GTP, KEYWDS 2 CYTOSOL, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.DEIMLING,K.-P.HOPFNER REVDAT 5 20-SEP-23 4KB6 1 REMARK SEQADV LINK REVDAT 4 07-MAR-18 4KB6 1 REMARK REVDAT 3 03-JUL-13 4KB6 1 JRNL REVDAT 2 12-JUN-13 4KB6 1 JRNL TITLE REVDAT 1 05-JUN-13 4KB6 0 JRNL AUTH F.CIVRIL,T.DEIMLING,C.C.DE OLIVEIRA MANN,A.ABLASSER,M.MOLDT, JRNL AUTH 2 G.WITTE,V.HORNUNG,K.P.HOPFNER JRNL TITL STRUCTURAL MECHANISM OF CYTOSOLIC DNA SENSING BY CGAS. JRNL REF NATURE V. 498 332 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23722159 JRNL DOI 10.1038/NATURE12305 REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 10739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.3422 - 4.8815 1.00 2683 142 0.2345 0.2327 REMARK 3 2 4.8815 - 3.8747 1.00 2578 136 0.2528 0.2502 REMARK 3 3 3.8747 - 3.3849 1.00 2544 134 0.2853 0.3046 REMARK 3 4 3.3849 - 3.0754 0.95 2396 126 0.3143 0.3338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3652 REMARK 3 ANGLE : 0.888 5042 REMARK 3 CHIRALITY : 0.058 544 REMARK 3 PLANARITY : 0.003 530 REMARK 3 DIHEDRAL : 24.454 1399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10762 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.070 REMARK 200 RESOLUTION RANGE LOW (A) : 999.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JLX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M NA-CACODYLATE, 2.5 MM SPERMINE, REMARK 280 60 MM MAGNESIUM CHLORIDE, 3 % PEG 400, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.89000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.89000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.14000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.94500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.14000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.94500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.89000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.14000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.94500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.89000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.14000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.94500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 132 REMARK 465 ALA A 133 REMARK 465 MET A 134 REMARK 465 LYS A 229 REMARK 465 ARG A 230 REMARK 465 ASN A 231 REMARK 465 PRO A 232 REMARK 465 GLY A 233 REMARK 465 GLY A 234 REMARK 465 ASN A 235 REMARK 465 GLU A 343 REMARK 465 GLY A 344 REMARK 465 SER A 345 REMARK 465 DC C 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 140 CD OE1 NE2 REMARK 480 LYS A 145 CG CD CE NZ REMARK 480 HIS A 151 ND1 CD2 CE1 NE2 REMARK 480 GLU A 155 CG CD OE1 OE2 REMARK 480 GLU A 165 CG CD OE1 OE2 REMARK 480 LEU A 168 CG CD1 CD2 REMARK 480 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 175 CG CD OE1 OE2 REMARK 480 LYS A 179 CG CD CE NZ REMARK 480 LYS A 206 CE NZ REMARK 480 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 480 ILE A 212 CD1 REMARK 480 GLN A 213 CG CD OE1 NE2 REMARK 480 LEU A 214 CG CD1 CD2 REMARK 480 GLU A 215 CG CD OE1 OE2 REMARK 480 GLU A 216 CG CD OE1 OE2 REMARK 480 ASN A 219 OD1 ND2 REMARK 480 LYS A 227 CD CE NZ REMARK 480 PHE A 228 CE1 CE2 CZ REMARK 480 PRO A 236 N CA CB CG CD REMARK 480 GLU A 238 CG CD OE1 OE2 REMARK 480 GLN A 239 CD OE1 NE2 REMARK 480 LEU A 241 CD1 CD2 REMARK 480 LYS A 243 CG CD CE NZ REMARK 480 GLU A 244 CG CD OE1 OE2 REMARK 480 LYS A 250 CB CG CD CE NZ REMARK 480 MET A 251 CG SD CE REMARK 480 LYS A 254 CG CD CE NZ REMARK 480 LYS A 257 CG CD CE NZ REMARK 480 ILE A 259 CD1 REMARK 480 LYS A 260 CD CE NZ REMARK 480 GLU A 261 CD OE1 OE2 REMARK 480 GLU A 262 OE1 OE2 REMARK 480 ILE A 263 CD1 REMARK 480 LYS A 264 CG CD CE NZ REMARK 480 ASN A 265 CG OD1 ND2 REMARK 480 ILE A 266 CD1 REMARK 480 GLU A 267 CB CG CD OE1 OE2 REMARK 480 ASP A 268 OD1 OD2 REMARK 480 ARG A 275 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 276 CG CD CE NZ REMARK 480 ARG A 277 CD NE CZ NH1 NH2 REMARK 480 ARG A 278 CD NE CZ NH1 NH2 REMARK 480 LEU A 286 CD1 CD2 REMARK 480 LYS A 289 CD CE NZ REMARK 480 LYS A 291 CB CG CD CE NZ REMARK 480 GLU A 292 CB CG CD OE1 OE2 REMARK 480 LEU A 299 CD1 CD2 REMARK 480 LYS A 313 CG CD CE NZ REMARK 480 GLN A 319 CG CD OE1 NE2 REMARK 480 LYS A 330 CD CE NZ REMARK 480 ARG A 331 CD NE CZ NH1 NH2 REMARK 480 LYS A 339 CE NZ REMARK 480 LYS A 342 CB CG CD CE NZ REMARK 480 GLU A 349 CB CG CD OE1 OE2 REMARK 480 GLU A 350 CG CD OE1 OE2 REMARK 480 LYS A 365 CD CE NZ REMARK 480 GLU A 395 CG CD OE1 OE2 REMARK 480 LYS A 398 CD CE NZ REMARK 480 LYS A 399 CG CD CE NZ REMARK 480 LYS A 400 CE NZ REMARK 480 ARG A 404 CD NE CZ NH1 NH2 REMARK 480 ARG A 405 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 406 CG CD OE1 OE2 REMARK 480 LYS A 409 CD CE NZ REMARK 480 LYS A 435 CG CD CE NZ REMARK 480 LYS A 453 CD CE NZ REMARK 480 GLU A 455 CG CD OE1 OE2 REMARK 480 GLN A 456 CG CD OE1 NE2 REMARK 480 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 475 CD CE NZ REMARK 480 GLU A 479 CG CD OE1 OE2 REMARK 480 PHE A 480 CE2 REMARK 480 LYS A 483 CG CD CE NZ REMARK 480 TYR A 487 CD2 CE2 CZ OH REMARK 480 DC B 1 P OP1 OP2 O5' C5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 175 48.43 -73.29 REMARK 500 ARG A 192 27.21 80.24 REMARK 500 SER A 196 -58.82 65.70 REMARK 500 PRO A 198 59.87 -67.54 REMARK 500 CYS A 218 55.30 -154.06 REMARK 500 GLU A 244 -0.19 71.31 REMARK 500 GLU A 267 49.57 39.79 REMARK 500 ASN A 366 64.27 -119.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 188 OG REMARK 620 2 GLN A 200 OE1 147.2 REMARK 620 3 ASN A 202 OD1 133.9 74.1 REMARK 620 4 ATP A 503 O3B 55.8 114.4 144.3 REMARK 620 5 ATP A 503 O3A 112.4 78.3 90.2 60.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 373 SG REMARK 620 2 CYS A 374 SG 136.8 REMARK 620 3 CYS A 381 SG 103.2 105.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JLX RELATED DB: PDB REMARK 900 RELATED ID: 4JLZ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 137 AND 138 ARE POLYMORPHIC CHANGES IN THE SEQUENCE DBREF 4KB6 A 135 497 UNP I3LM39 I3LM39_PIG 135 495 DBREF 4KB6 B 1 14 PDB 4KB6 4KB6 1 14 DBREF 4KB6 C 1 14 PDB 4KB6 4KB6 1 14 SEQADV 4KB6 GLY A 132 UNP I3LM39 EXPRESSION TAG SEQADV 4KB6 ALA A 133 UNP I3LM39 EXPRESSION TAG SEQADV 4KB6 MET A 134 UNP I3LM39 EXPRESSION TAG SEQADV 4KB6 GLN A 200 UNP I3LM39 GLU 200 ENGINEERED MUTATION SEQADV 4KB6 ASN A 202 UNP I3LM39 ASP 202 ENGINEERED MUTATION SEQADV 4KB6 ASP A 268 UNP I3LM39 SEE REMARK 999 SEQADV 4KB6 THR A 269 UNP I3LM39 SEE REMARK 999 SEQRES 1 A 366 GLY ALA MET GLY ALA TRP LYS LEU GLN THR VAL LEU GLU SEQRES 2 A 366 LYS VAL ARG LEU SER ARG HIS GLU ILE SER GLU ALA ALA SEQRES 3 A 366 GLU VAL VAL ASN TRP VAL VAL GLU HIS LEU LEU ARG ARG SEQRES 4 A 366 LEU GLN GLY GLY GLU SER GLU PHE LYS GLY VAL ALA LEU SEQRES 5 A 366 LEU ARG THR GLY SER TYR TYR GLU ARG VAL LYS ILE SER SEQRES 6 A 366 ALA PRO ASN GLN PHE ASN VAL MET PHE LYS LEU GLU VAL SEQRES 7 A 366 PRO ARG ILE GLN LEU GLU GLU TYR CYS ASN SER GLY ALA SEQRES 8 A 366 HIS TYR PHE VAL LYS PHE LYS ARG ASN PRO GLY GLY ASN SEQRES 9 A 366 PRO LEU GLU GLN PHE LEU GLU LYS GLU ILE LEU SER ALA SEQRES 10 A 366 SER LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU SEQRES 11 A 366 GLU ILE LYS ASN ILE GLU ASP THR GLY VAL THR VAL GLU SEQRES 12 A 366 ARG LYS ARG ARG GLY SER PRO ALA VAL THR LEU LEU ILE SEQRES 13 A 366 SER LYS PRO LYS GLU ILE SER VAL ASP ILE ILE LEU ALA SEQRES 14 A 366 LEU GLU SER LYS SER SER TRP PRO ALA SER THR GLN LYS SEQRES 15 A 366 GLY LEU PRO ILE SER GLN TRP LEU GLY ALA LYS VAL LYS SEQRES 16 A 366 ASN ASN LEU LYS ARG GLN PRO PHE TYR LEU VAL PRO LYS SEQRES 17 A 366 HIS ALA LYS GLU GLY SER GLY PHE GLN GLU GLU THR TRP SEQRES 18 A 366 ARG LEU SER PHE SER HIS ILE GLU LYS ASP ILE LEU LYS SEQRES 19 A 366 ASN HIS GLY GLN SER LYS THR CYS CYS GLU ILE ASP GLY SEQRES 20 A 366 VAL LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS SEQRES 21 A 366 TYR LEU LEU GLU GLN LEU LYS LYS LYS PHE GLY ASN ARG SEQRES 22 A 366 ARG GLU LEU ALA LYS PHE CYS SER TYR HIS VAL LYS THR SEQRES 23 A 366 ALA PHE PHE HIS VAL CYS THR GLN ASP PRO HIS ASP ASN SEQRES 24 A 366 GLN TRP HIS LEU LYS ASN LEU GLU CYS CYS PHE ASP ASN SEQRES 25 A 366 CYS VAL ALA TYR PHE LEU GLN CYS LEU LYS THR GLU GLN SEQRES 26 A 366 LEU ALA ASN TYR PHE ILE PRO GLY VAL ASN LEU PHE SER SEQRES 27 A 366 ARG ASP LEU ILE ASP LYS PRO SER LYS GLU PHE LEU SER SEQRES 28 A 366 LYS GLN ILE GLU TYR GLU ARG ASN ASN GLY PHE PRO VAL SEQRES 29 A 366 PHE TRP SEQRES 1 B 14 DC DG DA DC DG DC DT DA DG DC DG DT DC SEQRES 2 B 14 DG SEQRES 1 C 14 DC DG DA DC DG DC DT DA DG DC DG DT DC SEQRES 2 C 14 DG HET ZN A 501 1 HET GTP A 502 36 HET ATP A 503 35 HET MG A 504 1 HETNAM ZN ZINC ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 ZN ZN 2+ FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 7 MG MG 2+ FORMUL 8 HOH *2(H2 O) HELIX 1 1 LYS A 138 ARG A 147 1 10 HELIX 2 2 SER A 149 GLY A 174 1 26 HELIX 3 3 SER A 176 VAL A 181 5 6 HELIX 4 4 GLY A 187 ARG A 192 1 6 HELIX 5 5 SER A 247 GLU A 267 1 21 HELIX 6 6 PRO A 308 GLN A 312 5 5 HELIX 7 7 ILE A 317 GLY A 322 1 6 HELIX 8 8 GLY A 322 GLN A 332 1 11 HELIX 9 9 PHE A 356 ASN A 366 1 11 HELIX 10 10 CYS A 382 LYS A 400 1 19 HELIX 11 11 ARG A 404 PHE A 410 1 7 HELIX 12 12 CYS A 411 ASP A 426 1 16 HELIX 13 13 HIS A 428 LYS A 435 5 8 HELIX 14 14 ASN A 436 GLU A 455 1 20 HELIX 15 15 ASP A 474 GLY A 492 1 19 HELIX 16 16 PHE A 493 TRP A 497 5 5 SHEET 1 A 7 ALA A 182 THR A 186 0 SHEET 2 A 7 GLN A 200 GLU A 208 -1 O MET A 204 N LEU A 184 SHEET 3 A 7 ILE A 293 SER A 303 1 O ALA A 300 N LEU A 207 SHEET 4 A 7 PHE A 334 VAL A 337 -1 O LEU A 336 N LEU A 301 SHEET 5 A 7 TRP A 352 SER A 355 -1 O ARG A 353 N VAL A 337 SHEET 6 A 7 HIS A 223 LYS A 227 -1 N TYR A 224 O TRP A 352 SHEET 7 A 7 GLN A 213 GLU A 216 -1 N GLU A 215 O PHE A 225 SHEET 1 B 5 ALA A 182 THR A 186 0 SHEET 2 B 5 GLN A 200 GLU A 208 -1 O MET A 204 N LEU A 184 SHEET 3 B 5 ILE A 293 SER A 303 1 O ALA A 300 N LEU A 207 SHEET 4 B 5 ALA A 282 ILE A 287 -1 N VAL A 283 O ILE A 297 SHEET 5 B 5 VAL A 271 VAL A 273 -1 N THR A 272 O LEU A 286 SHEET 1 C 2 LEU A 241 GLU A 242 0 SHEET 2 C 2 ILE A 245 LEU A 246 -1 O ILE A 245 N GLU A 242 LINK OG SER A 188 MG MG A 504 1555 1555 2.76 LINK OE1 GLN A 200 MG MG A 504 1555 1555 2.48 LINK OD1 ASN A 202 MG MG A 504 1555 1555 2.14 LINK SG CYS A 373 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 374 ZN ZN A 501 1555 1555 2.29 LINK SG CYS A 381 ZN ZN A 501 1555 1555 2.23 LINK O3B ATP A 503 MG MG A 504 1555 1555 2.33 LINK O3A ATP A 503 MG MG A 504 1555 1555 2.79 CISPEP 1 TRP A 137 LYS A 138 0 -0.58 CISPEP 2 LYS A 289 PRO A 290 0 -1.82 SITE 1 AC1 4 HIS A 367 CYS A 373 CYS A 374 CYS A 381 SITE 1 AC2 11 THR A 186 MET A 204 GLY A 279 SER A 280 SITE 2 AC2 11 PRO A 281 ASP A 296 ILE A 298 ARG A 353 SITE 3 AC2 11 SER A 355 SER A 357 ATP A 503 SITE 1 AC3 14 GLY A 187 SER A 188 GLU A 191 GLN A 200 SITE 2 AC3 14 ASN A 202 ARG A 353 SER A 357 GLU A 360 SITE 3 AC3 14 LYS A 391 SER A 412 TYR A 413 LYS A 416 SITE 4 AC3 14 GTP A 502 MG A 504 SITE 1 AC4 4 SER A 188 GLN A 200 ASN A 202 ATP A 503 CRYST1 86.280 111.890 117.780 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011590 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008490 0.00000