HEADER HYDROLASE 27-APR-13 4KFR TITLE STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS TURRETED TITLE 2 ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME PACKAGING NTPASE B204; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2; SOURCE 3 ORGANISM_COMMON: STIV2; SOURCE 4 ORGANISM_TAXID: 754004; SOURCE 5 GENE: B204, STIV2_B204; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566/PTF16; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS FTSK-HERA SUPERFAMILY, P-LOOP ATPASE, GENOME PACKAGING NTPASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.HAPPONEN,E.OKSANEN,A.GOLDMAN,T.KAJANDER,S.BUTCHER REVDAT 4 28-FEB-24 4KFR 1 REMARK SEQADV LINK REVDAT 3 24-JUL-13 4KFR 1 JRNL REVDAT 2 05-JUN-13 4KFR 1 JRNL REVDAT 1 22-MAY-13 4KFR 0 JRNL AUTH L.J.HAPPONEN,E.OKSANEN,L.LILJEROOS,A.GOLDMAN,T.KAJANDER, JRNL AUTH 2 S.J.BUTCHER JRNL TITL THE STRUCTURE OF THE NTPASE THAT POWERS DNA PACKAGING INTO JRNL TITL 2 SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2. JRNL REF J.VIROL. V. 87 8388 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23698307 JRNL DOI 10.1128/JVI.00831-13 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 58755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6023 - 5.3944 0.98 2776 147 0.1778 0.2140 REMARK 3 2 5.3944 - 4.2825 0.99 2723 143 0.1389 0.1470 REMARK 3 3 4.2825 - 3.7414 0.99 2662 140 0.1427 0.1748 REMARK 3 4 3.7414 - 3.3994 0.99 2718 143 0.1513 0.1876 REMARK 3 5 3.3994 - 3.1558 0.99 2662 140 0.1751 0.2111 REMARK 3 6 3.1558 - 2.9698 0.99 2668 141 0.1908 0.2195 REMARK 3 7 2.9698 - 2.8211 0.99 2688 141 0.1967 0.2452 REMARK 3 8 2.8211 - 2.6983 0.99 2669 141 0.1988 0.2491 REMARK 3 9 2.6983 - 2.5944 0.99 2639 138 0.1953 0.2318 REMARK 3 10 2.5944 - 2.5049 0.98 2673 141 0.1923 0.2353 REMARK 3 11 2.5049 - 2.4266 0.99 2663 140 0.1960 0.2457 REMARK 3 12 2.4266 - 2.3572 0.98 2630 139 0.1886 0.2440 REMARK 3 13 2.3572 - 2.2951 0.98 2649 139 0.1910 0.2261 REMARK 3 14 2.2951 - 2.2391 0.98 2670 141 0.1842 0.2398 REMARK 3 15 2.2391 - 2.1882 0.98 2629 138 0.1891 0.2725 REMARK 3 16 2.1882 - 2.1417 0.98 2661 140 0.1968 0.2378 REMARK 3 17 2.1417 - 2.0988 0.98 2623 138 0.2142 0.2619 REMARK 3 18 2.0988 - 2.0592 0.98 2605 137 0.2266 0.2965 REMARK 3 19 2.0592 - 2.0224 0.98 2661 140 0.2261 0.2706 REMARK 3 20 2.0224 - 1.9882 0.98 2594 137 0.2428 0.3176 REMARK 3 21 1.9882 - 1.9560 0.94 2554 134 0.2511 0.2808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5127 REMARK 3 ANGLE : 1.142 6963 REMARK 3 CHIRALITY : 0.088 773 REMARK 3 PLANARITY : 0.005 849 REMARK 3 DIHEDRAL : 13.847 1833 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979790,0.979860,0.979110 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58758 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.956 REMARK 200 RESOLUTION RANGE LOW (A) : 48.587 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.170 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.17 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 0.21 M REMARK 280 AMMONIUM SULFATE, 0.05 M MAGNESIUM CHLORIDE, PROTEIN IN 50 MM REMARK 280 SODIUM CITRATE, 35% PEG6000, PH 6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.78550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.80200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.78550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.80200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 44 REMARK 465 ARG A 45 REMARK 465 SER A 46 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 LEU C 44 REMARK 465 ARG C 45 REMARK 465 SER C 46 REMARK 465 ARG C 74 REMARK 465 ALA C 75 REMARK 465 LYS C 76 REMARK 465 ASN C 77 REMARK 465 HIS C 208 REMARK 465 HIS C 209 REMARK 465 HIS C 210 REMARK 465 HIS C 211 REMARK 465 HIS C 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 N CA CB CG SD CE REMARK 470 LYS A 33 CD CE NZ REMARK 470 ASN A 42 CG OD1 ND2 REMARK 470 LEU A 43 CG CD1 CD2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 LYS A 149 CE NZ REMARK 470 ARG A 160 CD NE CZ NH1 NH2 REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 LYS A 202 CE NZ REMARK 470 HIS A 208 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 13 NZ REMARK 470 LYS B 33 NZ REMARK 470 ARG B 45 CZ NH1 NH2 REMARK 470 LYS B 112 CE NZ REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 LYS B 149 CE NZ REMARK 470 GLU B 161 CD OE1 OE2 REMARK 470 ARG B 166 CZ NH1 NH2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 HIS B 208 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 33 CD CE NZ REMARK 470 LEU C 43 CG CD1 CD2 REMARK 470 SER C 48 OG REMARK 470 LYS C 52 CG CD CE NZ REMARK 470 TYR C 72 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 78 CG OD1 OD2 REMARK 470 TYR C 106 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN C 113 CD OE1 NE2 REMARK 470 LYS C 114 CG CD CE NZ REMARK 470 LYS C 149 CG CD CE NZ REMARK 470 LYS C 199 CG CD CE NZ REMARK 470 LYS C 202 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 508 O HOH C 509 2.13 REMARK 500 OG1 THR A 182 O HOH A 456 2.15 REMARK 500 O3 SO4 B 304 O HOH B 510 2.15 REMARK 500 O ASN A 77 O HOH A 477 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 -49.20 160.26 REMARK 500 TYR A 24 -53.24 -127.07 REMARK 500 SER A 48 124.53 65.23 REMARK 500 ASP A 79 31.26 -97.65 REMARK 500 LYS A 112 -3.15 80.54 REMARK 500 ALA A 125 32.22 -141.62 REMARK 500 ILE A 172 -74.75 -125.10 REMARK 500 TYR A 186 -11.72 76.06 REMARK 500 ASN B 2 -76.51 -0.50 REMARK 500 TYR B 24 -53.60 -127.34 REMARK 500 THR B 97 115.42 -37.89 REMARK 500 ILE B 172 -70.07 -123.90 REMARK 500 SER B 173 136.69 -175.05 REMARK 500 TYR B 186 -8.71 76.24 REMARK 500 LEU B 205 -63.09 -106.65 REMARK 500 ASN C 2 101.95 93.12 REMARK 500 TYR C 24 -52.17 -120.23 REMARK 500 ALA C 125 33.46 -151.14 REMARK 500 ILE C 172 -75.56 -125.11 REMARK 500 TYR C 186 -10.83 79.21 REMARK 500 LEU C 205 -62.85 -106.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 487 O REMARK 620 2 HOH B 494 O 91.0 REMARK 620 3 HOH B 495 O 88.9 84.4 REMARK 620 4 HOH B 496 O 82.8 93.7 171.4 REMARK 620 5 HOH B 522 O 170.7 84.7 98.9 89.2 REMARK 620 6 HOH B 539 O 93.6 170.7 87.7 94.9 91.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KFS RELATED DB: PDB REMARK 900 STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS REMARK 900 TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH AMP REMARK 900 RELATED ID: 4KFT RELATED DB: PDB REMARK 900 STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS REMARK 900 TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH ATPGAMMAS REMARK 900 RELATED ID: 4KFU RELATED DB: PDB REMARK 900 STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS REMARK 900 TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH AMPPCP DBREF 4KFR A 1 204 UNP D5IEZ9 D5IEZ9_9VIRU 1 204 DBREF 4KFR B 1 204 UNP D5IEZ9 D5IEZ9_9VIRU 1 204 DBREF 4KFR C 1 204 UNP D5IEZ9 D5IEZ9_9VIRU 1 204 SEQADV 4KFR LEU A 205 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR GLU A 206 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS A 207 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS A 208 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS A 209 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS A 210 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS A 211 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS A 212 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR LEU B 205 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR GLU B 206 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS B 207 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS B 208 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS B 209 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS B 210 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS B 211 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS B 212 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR LEU C 205 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR GLU C 206 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS C 207 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS C 208 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS C 209 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS C 210 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS C 211 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFR HIS C 212 UNP D5IEZ9 EXPRESSION TAG SEQRES 1 A 212 MET ASN PRO ASP ASP ILE VAL VAL LEU VAL GLY ARG LYS SEQRES 2 A 212 LYS SER GLY LYS SER TYR LEU ILE LYS HIS TYR PHE ILE SEQRES 3 A 212 PRO VAL LEU LYS ALA HIS LYS ILE SER TYR ILE ILE ASP SEQRES 4 A 212 ASP HIS ASN LEU LEU ARG SER GLY SER GLU TYR SER LYS SEQRES 5 A 212 PHE GLY TYR ASN ALA THR SER LEU SER ASP ILE VAL SER SEQRES 6 A 212 LYS GLN TYR VAL VAL VAL TYR ASP ARG ALA LYS ASN ASP SEQRES 7 A 212 ASP PHE PHE GLU LYS LEU TRP GLN ALA SER LYS LEU HIS SEQRES 8 A 212 SER LYS LYS TYR GLY THR THR VAL LEU ILE ILE ASP GLU SEQRES 9 A 212 ALA TYR TYR HIS PHE LYS TYR LYS GLN LYS VAL THR PRO SEQRES 10 A 212 ALA ILE ASP GLU ALA LEU HIS ALA ASN ARG HIS ALA GLY SEQRES 11 A 212 LEU GLY LEU ILE LEU SER THR GLN ARG VAL TYR ASP LEU SEQRES 12 A 212 MET PRO ILE VAL TYR LYS GLN ALA ASP LEU ILE ILE MET SEQRES 13 A 212 PHE TYR THR ARG GLU PRO ASN GLU LEU ARG TRP ILE SER SEQRES 14 A 212 LYS TYR ILE SER ALA GLU ALA ALA GLU LYS VAL LYS THR SEQRES 15 A 212 LEU LYS GLN TYR HIS PHE LEU ILE TYR ASP VAL ASN SER SEQRES 16 A 212 GLN THR ILE LYS ILE HIS LYS PRO ILE LEU GLU HIS HIS SEQRES 17 A 212 HIS HIS HIS HIS SEQRES 1 B 212 MET ASN PRO ASP ASP ILE VAL VAL LEU VAL GLY ARG LYS SEQRES 2 B 212 LYS SER GLY LYS SER TYR LEU ILE LYS HIS TYR PHE ILE SEQRES 3 B 212 PRO VAL LEU LYS ALA HIS LYS ILE SER TYR ILE ILE ASP SEQRES 4 B 212 ASP HIS ASN LEU LEU ARG SER GLY SER GLU TYR SER LYS SEQRES 5 B 212 PHE GLY TYR ASN ALA THR SER LEU SER ASP ILE VAL SER SEQRES 6 B 212 LYS GLN TYR VAL VAL VAL TYR ASP ARG ALA LYS ASN ASP SEQRES 7 B 212 ASP PHE PHE GLU LYS LEU TRP GLN ALA SER LYS LEU HIS SEQRES 8 B 212 SER LYS LYS TYR GLY THR THR VAL LEU ILE ILE ASP GLU SEQRES 9 B 212 ALA TYR TYR HIS PHE LYS TYR LYS GLN LYS VAL THR PRO SEQRES 10 B 212 ALA ILE ASP GLU ALA LEU HIS ALA ASN ARG HIS ALA GLY SEQRES 11 B 212 LEU GLY LEU ILE LEU SER THR GLN ARG VAL TYR ASP LEU SEQRES 12 B 212 MET PRO ILE VAL TYR LYS GLN ALA ASP LEU ILE ILE MET SEQRES 13 B 212 PHE TYR THR ARG GLU PRO ASN GLU LEU ARG TRP ILE SER SEQRES 14 B 212 LYS TYR ILE SER ALA GLU ALA ALA GLU LYS VAL LYS THR SEQRES 15 B 212 LEU LYS GLN TYR HIS PHE LEU ILE TYR ASP VAL ASN SER SEQRES 16 B 212 GLN THR ILE LYS ILE HIS LYS PRO ILE LEU GLU HIS HIS SEQRES 17 B 212 HIS HIS HIS HIS SEQRES 1 C 212 MET ASN PRO ASP ASP ILE VAL VAL LEU VAL GLY ARG LYS SEQRES 2 C 212 LYS SER GLY LYS SER TYR LEU ILE LYS HIS TYR PHE ILE SEQRES 3 C 212 PRO VAL LEU LYS ALA HIS LYS ILE SER TYR ILE ILE ASP SEQRES 4 C 212 ASP HIS ASN LEU LEU ARG SER GLY SER GLU TYR SER LYS SEQRES 5 C 212 PHE GLY TYR ASN ALA THR SER LEU SER ASP ILE VAL SER SEQRES 6 C 212 LYS GLN TYR VAL VAL VAL TYR ASP ARG ALA LYS ASN ASP SEQRES 7 C 212 ASP PHE PHE GLU LYS LEU TRP GLN ALA SER LYS LEU HIS SEQRES 8 C 212 SER LYS LYS TYR GLY THR THR VAL LEU ILE ILE ASP GLU SEQRES 9 C 212 ALA TYR TYR HIS PHE LYS TYR LYS GLN LYS VAL THR PRO SEQRES 10 C 212 ALA ILE ASP GLU ALA LEU HIS ALA ASN ARG HIS ALA GLY SEQRES 11 C 212 LEU GLY LEU ILE LEU SER THR GLN ARG VAL TYR ASP LEU SEQRES 12 C 212 MET PRO ILE VAL TYR LYS GLN ALA ASP LEU ILE ILE MET SEQRES 13 C 212 PHE TYR THR ARG GLU PRO ASN GLU LEU ARG TRP ILE SER SEQRES 14 C 212 LYS TYR ILE SER ALA GLU ALA ALA GLU LYS VAL LYS THR SEQRES 15 C 212 LEU LYS GLN TYR HIS PHE LEU ILE TYR ASP VAL ASN SER SEQRES 16 C 212 GLN THR ILE LYS ILE HIS LYS PRO ILE LEU GLU HIS HIS SEQRES 17 C 212 HIS HIS HIS HIS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET MG B 305 1 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 4 SO4 9(O4 S 2-) FORMUL 10 MG MG 2+ FORMUL 14 HOH *450(H2 O) HELIX 1 1 GLY A 16 TYR A 24 1 9 HELIX 2 2 TYR A 24 HIS A 32 1 9 HELIX 3 3 TYR A 50 GLY A 54 5 5 HELIX 4 4 SER A 59 LYS A 66 1 8 HELIX 5 5 ASP A 79 GLY A 96 1 18 HELIX 6 6 GLU A 104 HIS A 108 5 5 HELIX 7 7 THR A 116 ALA A 125 1 10 HELIX 8 8 ALA A 125 GLY A 130 1 6 HELIX 9 9 ARG A 139 LEU A 143 5 5 HELIX 10 10 MET A 144 ALA A 151 1 8 HELIX 11 11 GLU A 161 ILE A 172 1 12 HELIX 12 12 SER A 173 LYS A 181 1 9 HELIX 13 13 MET B 1 ASP B 4 5 4 HELIX 14 14 GLY B 16 TYR B 24 1 9 HELIX 15 15 TYR B 24 HIS B 32 1 9 HELIX 16 16 LEU B 43 GLY B 47 5 5 HELIX 17 17 TYR B 50 GLY B 54 5 5 HELIX 18 18 SER B 59 LYS B 66 1 8 HELIX 19 19 ASP B 79 GLY B 96 1 18 HELIX 20 20 ALA B 105 LYS B 110 1 6 HELIX 21 21 THR B 116 ALA B 125 1 10 HELIX 22 22 ALA B 125 GLY B 130 1 6 HELIX 23 23 ARG B 139 MET B 144 5 6 HELIX 24 24 PRO B 145 ALA B 151 1 7 HELIX 25 25 GLU B 161 ILE B 172 1 12 HELIX 26 26 SER B 173 LYS B 181 1 9 HELIX 27 27 GLY C 16 TYR C 24 1 9 HELIX 28 28 TYR C 24 HIS C 32 1 9 HELIX 29 29 TYR C 50 GLY C 54 5 5 HELIX 30 30 SER C 59 LYS C 66 1 8 HELIX 31 31 ASP C 79 GLY C 96 1 18 HELIX 32 32 ALA C 105 LYS C 110 1 6 HELIX 33 33 THR C 116 ALA C 125 1 10 HELIX 34 34 ALA C 125 GLY C 130 1 6 HELIX 35 35 ARG C 139 MET C 144 5 6 HELIX 36 36 PRO C 145 ALA C 151 1 7 HELIX 37 37 GLU C 161 ILE C 172 1 12 HELIX 38 38 SER C 173 VAL C 180 1 8 HELIX 39 39 LYS C 181 LEU C 183 5 3 SHEET 1 A 9 TYR A 55 ALA A 57 0 SHEET 2 A 9 TYR A 68 TYR A 72 1 O TYR A 68 N TYR A 55 SHEET 3 A 9 SER A 35 ASP A 40 1 N ILE A 38 O VAL A 71 SHEET 4 A 9 THR A 98 ILE A 102 1 O ILE A 101 N ASP A 39 SHEET 5 A 9 LEU A 131 THR A 137 1 O ILE A 134 N ILE A 102 SHEET 6 A 9 ILE A 6 VAL A 10 1 N VAL A 7 O LEU A 133 SHEET 7 A 9 LEU A 153 MET A 156 1 O ILE A 155 N VAL A 8 SHEET 8 A 9 PHE A 188 ASP A 192 -1 O TYR A 191 N ILE A 154 SHEET 9 A 9 THR A 197 HIS A 201 -1 O LYS A 199 N ILE A 190 SHEET 1 B 9 TYR B 55 ASN B 56 0 SHEET 2 B 9 TYR B 68 TYR B 72 1 O VAL B 70 N TYR B 55 SHEET 3 B 9 SER B 35 ASP B 40 1 N ILE B 38 O VAL B 71 SHEET 4 B 9 THR B 98 ILE B 102 1 O ILE B 101 N ASP B 39 SHEET 5 B 9 LEU B 131 THR B 137 1 O ILE B 134 N ILE B 102 SHEET 6 B 9 ILE B 6 VAL B 10 1 N VAL B 7 O LEU B 133 SHEET 7 B 9 LEU B 153 MET B 156 1 O ILE B 155 N VAL B 8 SHEET 8 B 9 PHE B 188 ASP B 192 -1 O LEU B 189 N MET B 156 SHEET 9 B 9 THR B 197 HIS B 201 -1 O LYS B 199 N ILE B 190 SHEET 1 C 9 TYR C 55 ALA C 57 0 SHEET 2 C 9 TYR C 68 TYR C 72 1 O VAL C 70 N TYR C 55 SHEET 3 C 9 SER C 35 ASP C 40 1 N ILE C 38 O VAL C 71 SHEET 4 C 9 THR C 98 ILE C 102 1 O ILE C 101 N ILE C 37 SHEET 5 C 9 LEU C 131 THR C 137 1 O ILE C 134 N ILE C 102 SHEET 6 C 9 ILE C 6 VAL C 10 1 N VAL C 7 O LEU C 135 SHEET 7 C 9 LEU C 153 MET C 156 1 O ILE C 155 N VAL C 8 SHEET 8 C 9 PHE C 188 ASP C 192 -1 O TYR C 191 N ILE C 154 SHEET 9 C 9 ILE C 198 HIS C 201 -1 O HIS C 201 N PHE C 188 LINK MG MG B 305 O HOH B 487 1555 1555 2.24 LINK MG MG B 305 O HOH B 494 1555 1555 2.19 LINK MG MG B 305 O HOH B 495 1555 1555 2.16 LINK MG MG B 305 O HOH B 496 1555 1555 2.12 LINK MG MG B 305 O HOH B 522 1555 1555 2.14 LINK MG MG B 305 O HOH B 539 1555 1555 2.11 CISPEP 1 HIS B 207 HIS B 208 0 -7.16 CISPEP 2 MET C 1 ASN C 2 0 -6.31 SITE 1 AC1 8 LYS A 13 LYS A 14 SER A 15 GLY A 16 SITE 2 AC1 8 LYS A 17 SER A 18 HOH A 402 HOH A 414 SITE 1 AC2 5 HIS A 23 PRO A 27 GLU A 206 HIS A 207 SITE 2 AC2 5 LYS C 83 SITE 1 AC3 10 LYS B 13 LYS B 14 SER B 15 GLY B 16 SITE 2 AC3 10 LYS B 17 SER B 18 HOH B 488 HOH B 494 SITE 3 AC3 10 HOH B 495 HOH B 516 SITE 1 AC4 5 LYS A 83 HIS B 23 PRO B 27 GLU B 206 SITE 2 AC4 5 HIS B 207 SITE 1 AC5 4 LYS B 93 HOH B 441 LYS C 184 GLN C 185 SITE 1 AC6 9 HIS A 124 SER B 173 ALA B 174 GLU B 175 SITE 2 AC6 9 HOH B 510 HOH B 511 HOH B 531 HOH B 534 SITE 3 AC6 9 HOH B 574 SITE 1 AC7 6 HOH B 487 HOH B 494 HOH B 495 HOH B 496 SITE 2 AC7 6 HOH B 522 HOH B 539 SITE 1 AC8 5 TYR C 111 ARG C 166 TRP C 167 LYS C 170 SITE 2 AC8 5 TYR C 171 SITE 1 AC9 10 ARG C 12 LYS C 13 LYS C 14 SER C 15 SITE 2 AC9 10 GLY C 16 LYS C 17 SER C 18 HOH C 487 SITE 3 AC9 10 HOH C 491 HOH C 493 SITE 1 BC1 9 LYS B 83 HIS C 23 PRO C 27 GLU C 206 SITE 2 BC1 9 HIS C 207 HOH C 445 HOH C 484 HOH C 516 SITE 3 BC1 9 HOH C 543 CRYST1 193.571 59.604 77.561 90.00 111.08 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005166 0.000000 0.001991 0.00000 SCALE2 0.000000 0.016777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013818 0.00000