HEADER HYDROLASE 27-APR-13 4KFS TITLE STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS TURRETED TITLE 2 ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME PACKAGING NTPASE B204; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2; SOURCE 3 ORGANISM_COMMON: STIV2; SOURCE 4 ORGANISM_TAXID: 754004; SOURCE 5 GENE: B204, STIV2_B204; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566/PTF16; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS FTSK-HERA SUPERFAMILY, P-LOOP ATPASE, GENOME PACKAGING NTPASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.HAPPONEN,E.OKSANEN,T.KAJANDER,A.GOLDMAN,S.BUTCHER REVDAT 4 20-SEP-23 4KFS 1 REMARK SEQADV LINK REVDAT 3 24-JUL-13 4KFS 1 JRNL REVDAT 2 05-JUN-13 4KFS 1 JRNL REVDAT 1 22-MAY-13 4KFS 0 JRNL AUTH L.J.HAPPONEN,E.OKSANEN,L.LILJEROOS,A.GOLDMAN,T.KAJANDER, JRNL AUTH 2 S.J.BUTCHER JRNL TITL THE STRUCTURE OF THE NTPASE THAT POWERS DNA PACKAGING INTO JRNL TITL 2 SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2. JRNL REF J.VIROL. V. 87 8388 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23698307 JRNL DOI 10.1128/JVI.00831-13 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 28038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3070 - 4.1916 0.99 2789 146 0.1814 0.1963 REMARK 3 2 4.1916 - 3.3273 1.00 2729 144 0.1755 0.2013 REMARK 3 3 3.3273 - 2.9068 1.00 2748 145 0.1984 0.2656 REMARK 3 4 2.9068 - 2.6411 1.00 2726 144 0.2135 0.2514 REMARK 3 5 2.6411 - 2.4518 1.00 2707 142 0.2033 0.2804 REMARK 3 6 2.4518 - 2.3072 1.00 2741 144 0.1941 0.2696 REMARK 3 7 2.3072 - 2.1917 1.00 2691 142 0.2099 0.2410 REMARK 3 8 2.1917 - 2.0963 1.00 2717 143 0.2114 0.3108 REMARK 3 9 2.0963 - 2.0156 1.00 2691 142 0.2380 0.2636 REMARK 3 10 2.0156 - 1.9460 0.77 2097 110 0.2620 0.2898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 54.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.70560 REMARK 3 B22 (A**2) : 11.41510 REMARK 3 B33 (A**2) : -6.70950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.02180 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3360 REMARK 3 ANGLE : 1.125 4589 REMARK 3 CHIRALITY : 0.076 510 REMARK 3 PLANARITY : 0.005 551 REMARK 3 DIHEDRAL : 14.277 1190 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97372 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.946 REMARK 200 RESOLUTION RANGE LOW (A) : 46.294 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 5.360 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.96 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: PDB ENTRY 4KFR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 30% PEG4000, 5 MM AMP, PROTEIN IN 50 MM SODIUM CITRATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.50750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 44 REMARK 465 ARG A 45 REMARK 465 LYS A 76 REMARK 465 GLU A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 LEU B 44 REMARK 465 ARG B 45 REMARK 465 SER B 46 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 LEU B 205 REMARK 465 GLU B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 SER A 46 OG REMARK 470 TYR A 72 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 77 CG OD1 ND2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 ASP A 79 CG OD1 OD2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 110 CD CE NZ REMARK 470 GLN A 113 OE1 NE2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 13 CD CE NZ REMARK 470 LYS B 14 CD CE NZ REMARK 470 LYS B 30 CE NZ REMARK 470 LEU B 43 CG CD1 CD2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 78 CG OD1 OD2 REMARK 470 ASP B 79 CG OD1 OD2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 LYS B 83 CE NZ REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 112 NZ REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 413 O HOH B 455 2.12 REMARK 500 O HOH B 405 O HOH B 462 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 24 -74.12 -118.45 REMARK 500 GLU A 104 74.95 -119.61 REMARK 500 LYS A 112 -1.26 77.36 REMARK 500 ILE A 172 -77.54 -121.88 REMARK 500 TYR A 186 -1.46 72.06 REMARK 500 TYR B 24 -64.65 -108.56 REMARK 500 LYS B 112 -2.54 77.73 REMARK 500 ALA B 125 31.38 -142.98 REMARK 500 ILE B 172 -75.96 -116.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FLC B 303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 39 OD2 REMARK 620 2 ASP A 39 OD1 58.6 REMARK 620 3 HIS A 41 NE2 94.7 100.8 REMARK 620 4 ASP A 73 OD2 167.0 110.2 80.5 REMARK 620 5 HIS A 108 NE2 84.5 138.3 101.1 108.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC B 303 OB1 REMARK 620 2 FLC B 303 OHB 76.1 REMARK 620 3 FLC B 303 OA2 73.7 63.6 REMARK 620 4 HOH B 428 O 158.9 103.9 87.3 REMARK 620 5 HOH B 429 O 92.9 93.1 155.0 108.1 REMARK 620 6 HOH B 458 O 80.7 154.4 99.7 93.9 98.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC B 304 OA1 REMARK 620 2 FLC B 304 OB1 91.6 REMARK 620 3 FLC B 304 OHB 76.9 73.8 REMARK 620 4 HOH B 448 O 85.3 170.3 96.5 REMARK 620 5 HOH B 449 O 90.1 90.4 159.0 98.8 REMARK 620 6 HOH B 450 O 174.8 83.2 102.2 99.9 89.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KFR RELATED DB: PDB REMARK 900 STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS REMARK 900 TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH SULFATE REMARK 900 RELATED ID: 4KFT RELATED DB: PDB REMARK 900 STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS REMARK 900 TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH ATPGAMMAS REMARK 900 RELATED ID: 4KFU RELATED DB: PDB REMARK 900 STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS REMARK 900 TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH AMPPCP DBREF 4KFS A 1 204 UNP D5IEZ9 D5IEZ9_9VIRU 1 204 DBREF 4KFS B 1 204 UNP D5IEZ9 D5IEZ9_9VIRU 1 204 SEQADV 4KFS LEU A 205 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS GLU A 206 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS A 207 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS A 208 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS A 209 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS A 210 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS A 211 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS A 212 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS LEU B 205 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS GLU B 206 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS B 207 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS B 208 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS B 209 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS B 210 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS B 211 UNP D5IEZ9 EXPRESSION TAG SEQADV 4KFS HIS B 212 UNP D5IEZ9 EXPRESSION TAG SEQRES 1 A 212 MET ASN PRO ASP ASP ILE VAL VAL LEU VAL GLY ARG LYS SEQRES 2 A 212 LYS SER GLY LYS SER TYR LEU ILE LYS HIS TYR PHE ILE SEQRES 3 A 212 PRO VAL LEU LYS ALA HIS LYS ILE SER TYR ILE ILE ASP SEQRES 4 A 212 ASP HIS ASN LEU LEU ARG SER GLY SER GLU TYR SER LYS SEQRES 5 A 212 PHE GLY TYR ASN ALA THR SER LEU SER ASP ILE VAL SER SEQRES 6 A 212 LYS GLN TYR VAL VAL VAL TYR ASP ARG ALA LYS ASN ASP SEQRES 7 A 212 ASP PHE PHE GLU LYS LEU TRP GLN ALA SER LYS LEU HIS SEQRES 8 A 212 SER LYS LYS TYR GLY THR THR VAL LEU ILE ILE ASP GLU SEQRES 9 A 212 ALA TYR TYR HIS PHE LYS TYR LYS GLN LYS VAL THR PRO SEQRES 10 A 212 ALA ILE ASP GLU ALA LEU HIS ALA ASN ARG HIS ALA GLY SEQRES 11 A 212 LEU GLY LEU ILE LEU SER THR GLN ARG VAL TYR ASP LEU SEQRES 12 A 212 MET PRO ILE VAL TYR LYS GLN ALA ASP LEU ILE ILE MET SEQRES 13 A 212 PHE TYR THR ARG GLU PRO ASN GLU LEU ARG TRP ILE SER SEQRES 14 A 212 LYS TYR ILE SER ALA GLU ALA ALA GLU LYS VAL LYS THR SEQRES 15 A 212 LEU LYS GLN TYR HIS PHE LEU ILE TYR ASP VAL ASN SER SEQRES 16 A 212 GLN THR ILE LYS ILE HIS LYS PRO ILE LEU GLU HIS HIS SEQRES 17 A 212 HIS HIS HIS HIS SEQRES 1 B 212 MET ASN PRO ASP ASP ILE VAL VAL LEU VAL GLY ARG LYS SEQRES 2 B 212 LYS SER GLY LYS SER TYR LEU ILE LYS HIS TYR PHE ILE SEQRES 3 B 212 PRO VAL LEU LYS ALA HIS LYS ILE SER TYR ILE ILE ASP SEQRES 4 B 212 ASP HIS ASN LEU LEU ARG SER GLY SER GLU TYR SER LYS SEQRES 5 B 212 PHE GLY TYR ASN ALA THR SER LEU SER ASP ILE VAL SER SEQRES 6 B 212 LYS GLN TYR VAL VAL VAL TYR ASP ARG ALA LYS ASN ASP SEQRES 7 B 212 ASP PHE PHE GLU LYS LEU TRP GLN ALA SER LYS LEU HIS SEQRES 8 B 212 SER LYS LYS TYR GLY THR THR VAL LEU ILE ILE ASP GLU SEQRES 9 B 212 ALA TYR TYR HIS PHE LYS TYR LYS GLN LYS VAL THR PRO SEQRES 10 B 212 ALA ILE ASP GLU ALA LEU HIS ALA ASN ARG HIS ALA GLY SEQRES 11 B 212 LEU GLY LEU ILE LEU SER THR GLN ARG VAL TYR ASP LEU SEQRES 12 B 212 MET PRO ILE VAL TYR LYS GLN ALA ASP LEU ILE ILE MET SEQRES 13 B 212 PHE TYR THR ARG GLU PRO ASN GLU LEU ARG TRP ILE SER SEQRES 14 B 212 LYS TYR ILE SER ALA GLU ALA ALA GLU LYS VAL LYS THR SEQRES 15 B 212 LEU LYS GLN TYR HIS PHE LEU ILE TYR ASP VAL ASN SER SEQRES 16 B 212 GLN THR ILE LYS ILE HIS LYS PRO ILE LEU GLU HIS HIS SEQRES 17 B 212 HIS HIS HIS HIS HET AMP A 301 23 HET ZN A 302 1 HET SO4 A 303 5 HET MG B 301 1 HET MG B 302 1 HET FLC B 303 9 HET FLC B 304 13 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM FLC CITRATE ANION FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 ZN ZN 2+ FORMUL 5 SO4 O4 S 2- FORMUL 6 MG 2(MG 2+) FORMUL 8 FLC 2(C6 H5 O7 3-) FORMUL 10 HOH *128(H2 O) HELIX 1 1 GLY A 16 TYR A 24 1 9 HELIX 2 2 TYR A 24 HIS A 32 1 9 HELIX 3 3 TYR A 50 GLY A 54 5 5 HELIX 4 4 SER A 59 LYS A 66 1 8 HELIX 5 5 ASP A 79 GLY A 96 1 18 HELIX 6 6 ALA A 105 LYS A 110 1 6 HELIX 7 7 THR A 116 ALA A 125 1 10 HELIX 8 8 ARG A 139 LEU A 143 5 5 HELIX 9 9 MET A 144 ALA A 151 1 8 HELIX 10 10 GLU A 161 ILE A 172 1 12 HELIX 11 11 SER A 173 LYS A 181 1 9 HELIX 12 12 GLY B 16 TYR B 24 1 9 HELIX 13 13 TYR B 24 HIS B 32 1 9 HELIX 14 14 TYR B 50 GLY B 54 5 5 HELIX 15 15 SER B 59 LYS B 66 1 8 HELIX 16 16 ASP B 79 GLY B 96 1 18 HELIX 17 17 ALA B 105 LYS B 110 1 6 HELIX 18 18 THR B 116 ALA B 125 1 10 HELIX 19 19 ARG B 139 MET B 144 5 6 HELIX 20 20 PRO B 145 ALA B 151 1 7 HELIX 21 21 GLU B 161 ILE B 172 1 12 HELIX 22 22 SER B 173 LYS B 181 1 9 SHEET 1 A 9 TYR A 55 ASN A 56 0 SHEET 2 A 9 TYR A 68 TYR A 72 1 O VAL A 70 N TYR A 55 SHEET 3 A 9 SER A 35 ASP A 40 1 N ILE A 38 O VAL A 71 SHEET 4 A 9 THR A 98 ILE A 102 1 O ILE A 101 N ASP A 39 SHEET 5 A 9 LEU A 131 THR A 137 1 O ILE A 134 N ILE A 102 SHEET 6 A 9 ILE A 6 VAL A 10 1 N VAL A 7 O LEU A 133 SHEET 7 A 9 LEU A 153 MET A 156 1 O ILE A 155 N VAL A 8 SHEET 8 A 9 PHE A 188 ASP A 192 -1 O TYR A 191 N ILE A 154 SHEET 9 A 9 THR A 197 HIS A 201 -1 O THR A 197 N ASP A 192 SHEET 1 B 9 TYR B 55 ALA B 57 0 SHEET 2 B 9 TYR B 68 TYR B 72 1 O VAL B 70 N TYR B 55 SHEET 3 B 9 SER B 35 ASP B 40 1 N ILE B 38 O VAL B 71 SHEET 4 B 9 THR B 98 ILE B 102 1 O ILE B 101 N ILE B 37 SHEET 5 B 9 LEU B 131 THR B 137 1 O ILE B 134 N ILE B 102 SHEET 6 B 9 ILE B 6 VAL B 10 1 N LEU B 9 O LEU B 135 SHEET 7 B 9 LEU B 153 MET B 156 1 O ILE B 155 N VAL B 8 SHEET 8 B 9 LEU B 189 ASP B 192 -1 O TYR B 191 N ILE B 154 SHEET 9 B 9 THR B 197 ILE B 198 -1 O THR B 197 N ASP B 192 LINK OD2 ASP A 39 ZN ZN A 302 1555 1555 2.15 LINK OD1 ASP A 39 ZN ZN A 302 1555 1555 2.30 LINK NE2 HIS A 41 ZN ZN A 302 1555 1555 2.17 LINK OD2 ASP A 73 ZN ZN A 302 1555 1555 2.03 LINK NE2 HIS A 108 ZN ZN A 302 1555 1555 2.26 LINK MG MG B 301 OB1 FLC B 303 1555 1555 2.11 LINK MG MG B 301 OHB FLC B 303 1555 1555 2.21 LINK MG MG B 301 OA2 FLC B 303 1555 1555 2.56 LINK MG MG B 301 O HOH B 428 1555 1555 2.07 LINK MG MG B 301 O HOH B 429 1555 1555 2.07 LINK MG MG B 301 O HOH B 458 1555 1555 2.11 LINK MG MG B 302 OA1 FLC B 304 1555 1555 1.87 LINK MG MG B 302 OB1 FLC B 304 1555 1555 2.08 LINK MG MG B 302 OHB FLC B 304 1555 1555 2.26 LINK MG MG B 302 O HOH B 448 1555 1555 2.07 LINK MG MG B 302 O HOH B 449 1555 1555 2.07 LINK MG MG B 302 O HOH B 450 1555 1555 2.11 SITE 1 AC1 10 LYS A 14 SER A 15 GLY A 16 LYS A 17 SITE 2 AC1 10 SER A 18 TYR A 19 TYR A 186 ILE A 204 SITE 3 AC1 10 HOH A 429 HOH A 452 SITE 1 AC2 4 ASP A 39 HIS A 41 ASP A 73 HIS A 108 SITE 1 AC3 6 LEU A 123 ASN A 126 ARG A 127 GLN A 150 SITE 2 AC3 6 ASP A 152 HOH A 449 SITE 1 AC4 5 ASN B 194 FLC B 303 HOH B 428 HOH B 429 SITE 2 AC4 5 HOH B 458 SITE 1 AC5 4 FLC B 304 HOH B 448 HOH B 449 HOH B 450 SITE 1 AC6 5 ASP B 192 ASN B 194 MG B 301 HOH B 429 SITE 2 AC6 5 HOH B 458 SITE 1 AC7 13 HIS B 124 ALA B 125 ASN B 126 ARG B 127 SITE 2 AC7 13 HIS B 128 GLN B 150 MG B 302 HOH B 418 SITE 3 AC7 13 HOH B 448 HOH B 449 HOH B 450 HOH B 451 SITE 4 AC7 13 HOH B 454 CRYST1 46.600 61.015 70.004 90.00 96.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021459 0.000000 0.002472 0.00000 SCALE2 0.000000 0.016389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014379 0.00000