data_4KKN # _entry.id 4KKN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KKN pdb_00004kkn 10.2210/pdb4kkn/pdb RCSB RCSB079457 ? ? WWPDB D_1000079457 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-012704 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4KKN _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-06 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, P.R.' 1 'Ahmed, M.' 2 'Banu, R.' 3 'Bhosle, R.' 4 'Bonanno, J.' 5 'Calarese, D.A.' 6 'Celikgil, A.' 7 'Chamala, S.' 8 'Chan, M.K.' 9 'Chowdhury, S.' 10 'Fiser, A.' 11 'Garforth, S.J.' 12 'Scott Glenn, A.' 13 'Hammonds, J.' 14 'Hillerich, B.' 15 'Khafizov, K.' 16 'Lafleur, J.' 17 'Attonito, J.' 18 'Love, J.D.' 19 'Patel, H.' 20 'Patel, R.' 21 'Seidel, R.D.' 22 'Smith, B.' 23 'Stead, M.' 24 'Toro, R.' 25 'Casadevall, A.' 26 'Almo, S.C.' 27 'New York Structural Genomics Research Consortium (NYSGRC)' 28 'Atoms-to-Animals: The Immune Function Network (IFN)' 29 # _citation.id primary _citation.title 'Crystal structure of bovine CTLA-4, PSI-NYSGRC-012704' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, P.R.' 1 ? primary 'Casadevall, A.' 2 ? primary 'Almo, S.C.' 3 ? # _cell.entry_id 4KKN _cell.length_a 80.875 _cell.length_b 87.831 _cell.length_c 52.250 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4KKN _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytotoxic T-lymphocyte associated protein 4' 14446.169 1 ? ? 'UNP residues 34-160' ? 2 branched man ;alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 748.682 1 ? ? ? ? 3 water nat water 18.015 41 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CTLA-4 protein, Uncharacterized protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QDYGGKGMNVTQPPVVLASSRGVASFSCEYESSGKADEVRVTVLREAGSQVTEVCAGTYMVEDELTFLDDSTCIGTSRGN KVNLTIQGLRAMDTGLYVCKVELMYPPPYYVGIGNGTQIYVIDPEPAENLYFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;QDYGGKGMNVTQPPVVLASSRGVASFSCEYESSGKADEVRVTVLREAGSQVTEVCAGTYMVEDELTFLDDSTCIGTSRGN KVNLTIQGLRAMDTGLYVCKVELMYPPPYYVGIGNGTQIYVIDPEPAENLYFQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-012704 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ASP n 1 3 TYR n 1 4 GLY n 1 5 GLY n 1 6 LYS n 1 7 GLY n 1 8 MET n 1 9 ASN n 1 10 VAL n 1 11 THR n 1 12 GLN n 1 13 PRO n 1 14 PRO n 1 15 VAL n 1 16 VAL n 1 17 LEU n 1 18 ALA n 1 19 SER n 1 20 SER n 1 21 ARG n 1 22 GLY n 1 23 VAL n 1 24 ALA n 1 25 SER n 1 26 PHE n 1 27 SER n 1 28 CYS n 1 29 GLU n 1 30 TYR n 1 31 GLU n 1 32 SER n 1 33 SER n 1 34 GLY n 1 35 LYS n 1 36 ALA n 1 37 ASP n 1 38 GLU n 1 39 VAL n 1 40 ARG n 1 41 VAL n 1 42 THR n 1 43 VAL n 1 44 LEU n 1 45 ARG n 1 46 GLU n 1 47 ALA n 1 48 GLY n 1 49 SER n 1 50 GLN n 1 51 VAL n 1 52 THR n 1 53 GLU n 1 54 VAL n 1 55 CYS n 1 56 ALA n 1 57 GLY n 1 58 THR n 1 59 TYR n 1 60 MET n 1 61 VAL n 1 62 GLU n 1 63 ASP n 1 64 GLU n 1 65 LEU n 1 66 THR n 1 67 PHE n 1 68 LEU n 1 69 ASP n 1 70 ASP n 1 71 SER n 1 72 THR n 1 73 CYS n 1 74 ILE n 1 75 GLY n 1 76 THR n 1 77 SER n 1 78 ARG n 1 79 GLY n 1 80 ASN n 1 81 LYS n 1 82 VAL n 1 83 ASN n 1 84 LEU n 1 85 THR n 1 86 ILE n 1 87 GLN n 1 88 GLY n 1 89 LEU n 1 90 ARG n 1 91 ALA n 1 92 MET n 1 93 ASP n 1 94 THR n 1 95 GLY n 1 96 LEU n 1 97 TYR n 1 98 VAL n 1 99 CYS n 1 100 LYS n 1 101 VAL n 1 102 GLU n 1 103 LEU n 1 104 MET n 1 105 TYR n 1 106 PRO n 1 107 PRO n 1 108 PRO n 1 109 TYR n 1 110 TYR n 1 111 VAL n 1 112 GLY n 1 113 ILE n 1 114 GLY n 1 115 ASN n 1 116 GLY n 1 117 THR n 1 118 GLN n 1 119 ILE n 1 120 TYR n 1 121 VAL n 1 122 ILE n 1 123 ASP n 1 124 PRO n 1 125 GLU n 1 126 PRO n 1 127 ALA n 1 128 GLU n 1 129 ASN n 1 130 LEU n 1 131 TYR n 1 132 PHE n 1 133 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'bovine,cow,domestic cattle,domestic cow' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CTLA-4, CTLA4' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'cabbage looper' _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Hi5 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pIEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q28090_BOVIN _struct_ref.pdbx_db_accession Q28090 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KGMNVTQPPVVLASSRGVASFSCEYESSGKADEVRVTVLREAGSQVTEVCAGTYMVEDELTFLDDSTCIGTSRGNKVNLT IQGLRAMDTGLYVCKVELMYPPPYYVGIGNGTQIYVIDPEP ; _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4KKN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q28090 _struct_ref_seq.db_align_beg 34 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 34 _struct_ref_seq.pdbx_auth_seq_align_end 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KKN GLN A 1 ? UNP Q28090 ? ? 'expression tag' 29 1 1 4KKN ASP A 2 ? UNP Q28090 ? ? 'expression tag' 30 2 1 4KKN TYR A 3 ? UNP Q28090 ? ? 'expression tag' 31 3 1 4KKN GLY A 4 ? UNP Q28090 ? ? 'expression tag' 32 4 1 4KKN GLY A 5 ? UNP Q28090 ? ? 'expression tag' 33 5 1 4KKN ALA A 127 ? UNP Q28090 ? ? 'expression tag' 155 6 1 4KKN GLU A 128 ? UNP Q28090 ? ? 'expression tag' 156 7 1 4KKN ASN A 129 ? UNP Q28090 ? ? 'expression tag' 157 8 1 4KKN LEU A 130 ? UNP Q28090 ? ? 'expression tag' 158 9 1 4KKN TYR A 131 ? UNP Q28090 ? ? 'expression tag' 159 10 1 4KKN PHE A 132 ? UNP Q28090 ? ? 'expression tag' 160 11 1 4KKN GLN A 133 ? UNP Q28090 ? ? 'expression tag' 161 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4KKN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.21 _exptl_crystal.density_percent_sol 61.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein (20 mM Hepes, pH 7.5, 150 mM NaCl, 10% glycerol, Reservoir (30%(w/v) PEG1500, 10%(v/v) Isopropanol, 0.1M CaCl2, 0.1M Imidazole, pH 6.5), Cryoprotection (70%(v/v) Sucrose), Vapor Diffusion, Sitting Drop, temperature 298K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-04-12 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0750 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0750 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4KKN _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.250 _reflns.number_obs 9112 _reflns.number_all 9123 _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.700 _reflns.B_iso_Wilson_estimate 32.11 _reflns.pdbx_redundancy 13.600 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 2.250 2.290 98.900 0.677 ? ? 11.300 ? ? ? ? ? ? 1 2 2.290 2.330 99.300 0.724 ? ? 12.400 ? ? ? ? ? ? 1 3 2.330 2.380 100.000 0.689 ? ? 12.900 ? ? ? ? ? ? 1 4 2.380 2.420 100.000 0.674 ? ? 13.700 ? ? ? ? ? ? 1 5 2.420 2.480 100.000 0.526 ? ? 14.000 ? ? ? ? ? ? 1 6 2.480 2.530 100.000 0.460 ? ? 14.200 ? ? ? ? ? ? 1 7 2.530 2.600 100.000 0.403 ? ? 14.400 ? ? ? ? ? ? 1 8 2.600 2.670 100.000 0.313 ? ? 14.500 ? ? ? ? ? ? 1 9 2.670 2.750 100.000 0.289 ? ? 14.300 ? ? ? ? ? ? 1 10 2.750 2.830 100.000 0.231 ? ? 14.500 ? ? ? ? ? ? 1 11 2.830 2.940 100.000 0.172 ? ? 14.300 ? ? ? ? ? ? 1 12 2.940 3.050 100.000 0.121 ? ? 14.300 ? ? ? ? ? ? 1 13 3.050 3.190 100.000 0.113 ? ? 14.100 ? ? ? ? ? ? 1 14 3.190 3.360 100.000 0.091 ? ? 14.000 ? ? ? ? ? ? 1 15 3.360 3.570 100.000 0.073 ? ? 13.900 ? ? ? ? ? ? 1 16 3.570 3.850 100.000 0.063 ? ? 13.800 ? ? ? ? ? ? 1 17 3.850 4.230 100.000 0.059 ? ? 13.400 ? ? ? ? ? ? 1 18 4.230 4.850 100.000 0.053 ? ? 13.100 ? ? ? ? ? ? 1 19 4.850 6.100 100.000 0.047 ? ? 13.100 ? ? ? ? ? ? 1 20 6.100 50.000 100.000 0.037 ? ? 12.600 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4KKN _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8367 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.915 _refine.ls_d_res_high 2.253 _refine.ls_percent_reflns_obs 91.74 _refine.ls_R_factor_obs 0.1923 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1898 _refine.ls_R_factor_R_free 0.2409 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.77 _refine.ls_number_reflns_R_free 399 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.6296 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 2X44 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.26 _refine.pdbx_overall_phase_error 24.25 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 878 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 969 _refine_hist.d_res_high 2.253 _refine_hist.d_res_low 43.915 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 947 'X-RAY DIFFRACTION' ? f_angle_d 1.284 ? ? 1290 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 25.442 ? ? 362 'X-RAY DIFFRACTION' ? f_chiral_restr 0.076 ? ? 162 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 159 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.2533 2.5793 2127 0.2144 75.00 0.2792 . . 117 . . . . 'X-RAY DIFFRACTION' . 2.5793 3.2495 2861 0.2113 100.00 0.2916 . . 129 . . . . 'X-RAY DIFFRACTION' . 3.2495 43.9238 2980 0.1747 100.00 0.2100 . . 153 . . . . # _struct.entry_id 4KKN _struct.title 'Crystal structure of bovine CTLA-4, PSI-NYSGRC-012704' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KKN _struct_keywords.text ;Ig-like V-type domain, Ig superfamily, IMMUNE SYSTEM, extracellular, Structural genomics, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC, Atoms-to-Animals: The Immune Function Network, IFN ; _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly should be a dimer' # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ARG _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 90 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 94 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ARG _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 118 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 122 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 56 A CYS 127 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 73 SG ? ? A CYS 83 A CYS 101 1_555 ? ? ? ? ? ? ? 2.038 ? ? covale1 covale one ? A ASN 83 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 111 B NAG 1 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale4 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.437 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 105 A . ? TYR 133 A PRO 106 A ? PRO 134 A 1 4.35 2 PRO 107 A . ? PRO 135 A PRO 108 A ? PRO 136 A 1 2.30 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 8 ? THR A 11 ? MET A 36 THR A 39 A 2 ALA A 24 ? SER A 32 ? ALA A 52 SER A 60 A 3 LYS A 81 ? ILE A 86 ? LYS A 109 ILE A 114 A 4 CYS A 73 ? ARG A 78 ? CYS A 101 ARG A 106 A 5 GLU A 64 ? ASP A 69 ? GLU A 92 ASP A 97 B 1 VAL A 15 ? LEU A 17 ? VAL A 43 LEU A 45 B 2 THR A 117 ? TYR A 120 ? THR A 145 TYR A 148 B 3 GLY A 95 ? TYR A 105 ? GLY A 123 TYR A 133 B 4 GLU A 38 ? ALA A 47 ? GLU A 66 ALA A 75 B 5 GLN A 50 ? MET A 60 ? GLN A 78 MET A 88 C 1 VAL A 15 ? LEU A 17 ? VAL A 43 LEU A 45 C 2 THR A 117 ? TYR A 120 ? THR A 145 TYR A 148 C 3 GLY A 95 ? TYR A 105 ? GLY A 123 TYR A 133 C 4 TYR A 110 ? ILE A 113 ? TYR A 138 ILE A 141 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 11 ? N THR A 39 O GLU A 29 ? O GLU A 57 A 2 3 N PHE A 26 ? N PHE A 54 O LEU A 84 ? O LEU A 112 A 3 4 O LYS A 81 ? O LYS A 109 N ARG A 78 ? N ARG A 106 A 4 5 O GLY A 75 ? O GLY A 103 N LEU A 68 ? N LEU A 96 B 1 2 N VAL A 16 ? N VAL A 44 O GLN A 118 ? O GLN A 146 B 2 3 O ILE A 119 ? O ILE A 147 N GLY A 95 ? N GLY A 123 B 3 4 O VAL A 98 ? O VAL A 126 N LEU A 44 ? N LEU A 72 B 4 5 N ARG A 45 ? N ARG A 73 O THR A 52 ? O THR A 80 C 1 2 N VAL A 16 ? N VAL A 44 O GLN A 118 ? O GLN A 146 C 2 3 O ILE A 119 ? O ILE A 147 N GLY A 95 ? N GLY A 123 C 3 4 N VAL A 101 ? N VAL A 129 O GLY A 112 ? O GLY A 140 # _atom_sites.entry_id 4KKN _atom_sites.fract_transf_matrix[1][1] 0.012365 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011386 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019139 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 29 ? ? ? A . n A 1 2 ASP 2 30 ? ? ? A . n A 1 3 TYR 3 31 ? ? ? A . n A 1 4 GLY 4 32 ? ? ? A . n A 1 5 GLY 5 33 ? ? ? A . n A 1 6 LYS 6 34 ? ? ? A . n A 1 7 GLY 7 35 35 GLY GLY A . n A 1 8 MET 8 36 36 MET MET A . n A 1 9 ASN 9 37 37 ASN ASN A . n A 1 10 VAL 10 38 38 VAL VAL A . n A 1 11 THR 11 39 39 THR THR A . n A 1 12 GLN 12 40 40 GLN GLN A . n A 1 13 PRO 13 41 41 PRO PRO A . n A 1 14 PRO 14 42 42 PRO PRO A . n A 1 15 VAL 15 43 43 VAL VAL A . n A 1 16 VAL 16 44 44 VAL VAL A . n A 1 17 LEU 17 45 45 LEU LEU A . n A 1 18 ALA 18 46 46 ALA ALA A . n A 1 19 SER 19 47 47 SER SER A . n A 1 20 SER 20 48 48 SER SER A . n A 1 21 ARG 21 49 49 ARG ARG A . n A 1 22 GLY 22 50 50 GLY GLY A . n A 1 23 VAL 23 51 51 VAL VAL A . n A 1 24 ALA 24 52 52 ALA ALA A . n A 1 25 SER 25 53 53 SER SER A . n A 1 26 PHE 26 54 54 PHE PHE A . n A 1 27 SER 27 55 55 SER SER A . n A 1 28 CYS 28 56 56 CYS CYS A . n A 1 29 GLU 29 57 57 GLU GLU A . n A 1 30 TYR 30 58 58 TYR TYR A . n A 1 31 GLU 31 59 59 GLU GLU A . n A 1 32 SER 32 60 60 SER SER A . n A 1 33 SER 33 61 61 SER SER A . n A 1 34 GLY 34 62 62 GLY GLY A . n A 1 35 LYS 35 63 63 LYS LYS A . n A 1 36 ALA 36 64 64 ALA ALA A . n A 1 37 ASP 37 65 65 ASP ASP A . n A 1 38 GLU 38 66 66 GLU GLU A . n A 1 39 VAL 39 67 67 VAL VAL A . n A 1 40 ARG 40 68 68 ARG ARG A . n A 1 41 VAL 41 69 69 VAL VAL A . n A 1 42 THR 42 70 70 THR THR A . n A 1 43 VAL 43 71 71 VAL VAL A . n A 1 44 LEU 44 72 72 LEU LEU A . n A 1 45 ARG 45 73 73 ARG ARG A . n A 1 46 GLU 46 74 74 GLU GLU A . n A 1 47 ALA 47 75 75 ALA ALA A . n A 1 48 GLY 48 76 76 GLY GLY A . n A 1 49 SER 49 77 77 SER SER A . n A 1 50 GLN 50 78 78 GLN GLN A . n A 1 51 VAL 51 79 79 VAL VAL A . n A 1 52 THR 52 80 80 THR THR A . n A 1 53 GLU 53 81 81 GLU GLU A . n A 1 54 VAL 54 82 82 VAL VAL A . n A 1 55 CYS 55 83 83 CYS CYS A . n A 1 56 ALA 56 84 84 ALA ALA A . n A 1 57 GLY 57 85 85 GLY GLY A . n A 1 58 THR 58 86 86 THR THR A . n A 1 59 TYR 59 87 87 TYR TYR A . n A 1 60 MET 60 88 88 MET MET A . n A 1 61 VAL 61 89 89 VAL VAL A . n A 1 62 GLU 62 90 90 GLU GLU A . n A 1 63 ASP 63 91 91 ASP ASP A . n A 1 64 GLU 64 92 92 GLU GLU A . n A 1 65 LEU 65 93 93 LEU LEU A . n A 1 66 THR 66 94 94 THR THR A . n A 1 67 PHE 67 95 95 PHE PHE A . n A 1 68 LEU 68 96 96 LEU LEU A . n A 1 69 ASP 69 97 97 ASP ASP A . n A 1 70 ASP 70 98 98 ASP ASP A . n A 1 71 SER 71 99 99 SER SER A . n A 1 72 THR 72 100 100 THR THR A . n A 1 73 CYS 73 101 101 CYS CYS A . n A 1 74 ILE 74 102 102 ILE ILE A . n A 1 75 GLY 75 103 103 GLY GLY A . n A 1 76 THR 76 104 104 THR THR A . n A 1 77 SER 77 105 105 SER SER A . n A 1 78 ARG 78 106 106 ARG ARG A . n A 1 79 GLY 79 107 107 GLY GLY A . n A 1 80 ASN 80 108 108 ASN ASN A . n A 1 81 LYS 81 109 109 LYS LYS A . n A 1 82 VAL 82 110 110 VAL VAL A . n A 1 83 ASN 83 111 111 ASN ASN A . n A 1 84 LEU 84 112 112 LEU LEU A . n A 1 85 THR 85 113 113 THR THR A . n A 1 86 ILE 86 114 114 ILE ILE A . n A 1 87 GLN 87 115 115 GLN GLN A . n A 1 88 GLY 88 116 116 GLY GLY A . n A 1 89 LEU 89 117 117 LEU LEU A . n A 1 90 ARG 90 118 118 ARG ARG A . n A 1 91 ALA 91 119 119 ALA ALA A . n A 1 92 MET 92 120 120 MET MET A . n A 1 93 ASP 93 121 121 ASP ASP A . n A 1 94 THR 94 122 122 THR THR A . n A 1 95 GLY 95 123 123 GLY GLY A . n A 1 96 LEU 96 124 124 LEU LEU A . n A 1 97 TYR 97 125 125 TYR TYR A . n A 1 98 VAL 98 126 126 VAL VAL A . n A 1 99 CYS 99 127 127 CYS CYS A . n A 1 100 LYS 100 128 128 LYS LYS A . n A 1 101 VAL 101 129 129 VAL VAL A . n A 1 102 GLU 102 130 130 GLU GLU A . n A 1 103 LEU 103 131 131 LEU LEU A . n A 1 104 MET 104 132 132 MET MET A . n A 1 105 TYR 105 133 133 TYR TYR A . n A 1 106 PRO 106 134 134 PRO PRO A . n A 1 107 PRO 107 135 135 PRO PRO A . n A 1 108 PRO 108 136 136 PRO PRO A . n A 1 109 TYR 109 137 137 TYR TYR A . n A 1 110 TYR 110 138 138 TYR TYR A . n A 1 111 VAL 111 139 139 VAL VAL A . n A 1 112 GLY 112 140 140 GLY GLY A . n A 1 113 ILE 113 141 141 ILE ILE A . n A 1 114 GLY 114 142 142 GLY GLY A . n A 1 115 ASN 115 143 143 ASN ASN A . n A 1 116 GLY 116 144 144 GLY GLY A . n A 1 117 THR 117 145 145 THR THR A . n A 1 118 GLN 118 146 146 GLN GLN A . n A 1 119 ILE 119 147 147 ILE ILE A . n A 1 120 TYR 120 148 148 TYR TYR A . n A 1 121 VAL 121 149 149 VAL VAL A . n A 1 122 ILE 122 150 150 ILE ILE A . n A 1 123 ASP 123 151 151 ASP ASP A . n A 1 124 PRO 124 152 ? ? ? A . n A 1 125 GLU 125 153 ? ? ? A . n A 1 126 PRO 126 154 ? ? ? A . n A 1 127 ALA 127 155 ? ? ? A . n A 1 128 GLU 128 156 ? ? ? A . n A 1 129 ASN 129 157 ? ? ? A . n A 1 130 LEU 130 158 ? ? ? A . n A 1 131 TYR 131 159 ? ? ? A . n A 1 132 PHE 132 160 ? ? ? A . n A 1 133 GLN 133 161 ? ? ? A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'New York Structural Genomics Research Consortium' NYSGRC 2 PSI:Biology 'Atoms-to-Animals: The Immune Function Network' IFN # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 601 1 HOH HOH A . C 3 HOH 2 602 2 HOH HOH A . C 3 HOH 3 603 3 HOH HOH A . C 3 HOH 4 604 4 HOH HOH A . C 3 HOH 5 605 5 HOH HOH A . C 3 HOH 6 606 6 HOH HOH A . C 3 HOH 7 607 7 HOH HOH A . C 3 HOH 8 608 8 HOH HOH A . C 3 HOH 9 609 9 HOH HOH A . C 3 HOH 10 610 10 HOH HOH A . C 3 HOH 11 611 11 HOH HOH A . C 3 HOH 12 612 12 HOH HOH A . C 3 HOH 13 613 13 HOH HOH A . C 3 HOH 14 614 14 HOH HOH A . C 3 HOH 15 615 15 HOH HOH A . C 3 HOH 16 616 16 HOH HOH A . C 3 HOH 17 617 17 HOH HOH A . C 3 HOH 18 618 18 HOH HOH A . C 3 HOH 19 619 19 HOH HOH A . C 3 HOH 20 620 20 HOH HOH A . C 3 HOH 21 621 21 HOH HOH A . C 3 HOH 22 622 22 HOH HOH A . C 3 HOH 23 623 23 HOH HOH A . C 3 HOH 24 624 24 HOH HOH A . C 3 HOH 25 625 25 HOH HOH A . C 3 HOH 26 626 26 HOH HOH A . C 3 HOH 27 627 27 HOH HOH A . C 3 HOH 28 628 28 HOH HOH A . C 3 HOH 29 629 29 HOH HOH A . C 3 HOH 30 630 30 HOH HOH A . C 3 HOH 31 631 31 HOH HOH A . C 3 HOH 32 632 32 HOH HOH A . C 3 HOH 33 633 33 HOH HOH A . C 3 HOH 34 634 34 HOH HOH A . C 3 HOH 35 635 35 HOH HOH A . C 3 HOH 36 636 36 HOH HOH A . C 3 HOH 37 637 37 HOH HOH A . C 3 HOH 38 638 38 HOH HOH A . C 3 HOH 39 639 39 HOH HOH A . C 3 HOH 40 640 40 HOH HOH A . C 3 HOH 41 641 41 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 83 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 111 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-12 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-09-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' atom_site 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' struct_asym 15 3 'Structure model' struct_conn 16 3 'Structure model' struct_ref_seq_dif 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen 19 4 'Structure model' chem_comp 20 4 'Structure model' chem_comp_atom 21 4 'Structure model' chem_comp_bond 22 4 'Structure model' database_2 23 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_atom_site.auth_asym_id' 3 3 'Structure model' '_atom_site.auth_seq_id' 4 3 'Structure model' '_atom_site.label_asym_id' 5 3 'Structure model' '_atom_site.label_entity_id' 6 3 'Structure model' '_chem_comp.name' 7 3 'Structure model' '_chem_comp.type' 8 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 9 3 'Structure model' '_struct_conn.pdbx_dist_value' 10 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 3 'Structure model' '_struct_conn.pdbx_role' 12 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 3 'Structure model' '_struct_ref_seq_dif.details' 25 4 'Structure model' '_chem_comp.pdbx_synonyms' 26 4 'Structure model' '_database_2.pdbx_DOI' 27 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -15.8978 -11.2734 -2.8875 0.1368 0.2048 0.2021 0.0121 0.0693 -0.0801 3.3077 5.2487 6.2494 1.8437 0.5313 1.7043 0.0060 -0.3681 0.6280 0.1614 -0.1133 0.4220 -0.1519 -0.4541 0.0991 'X-RAY DIFFRACTION' 2 ? refined -14.0797 -21.9438 -8.1904 0.2772 0.2272 0.1879 -0.0851 0.0580 -0.0346 1.7345 2.3886 2.3650 0.3647 1.7290 -0.3258 -0.1575 -0.1111 -0.3102 -0.4598 0.0614 -0.0645 0.8149 -0.4575 -0.0212 'X-RAY DIFFRACTION' 3 ? refined -17.3326 -21.2059 2.7577 0.2750 0.4217 0.1491 -0.1176 0.0275 -0.0542 5.1515 6.6072 6.6941 2.2257 -3.0000 -2.2268 0.2674 -0.6600 -0.1222 0.0822 -0.4516 0.0488 0.4683 -0.4268 0.1526 'X-RAY DIFFRACTION' 4 ? refined -11.7022 -16.1112 -7.1221 0.2477 0.1673 0.0673 -0.0428 0.0362 -0.0401 4.7132 4.7196 4.9883 2.8662 1.1692 1.7237 -0.0787 -0.2305 -0.0128 -0.2100 0.1042 -0.2680 0.1484 -0.3184 -0.1292 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 35 through 60 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 61 through 88 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 89 through 114 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 115 through 151) ; # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 PHENIX . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 36 ? ? -164.18 90.39 2 1 ASP A 65 ? ? -135.18 -57.50 3 1 ASP A 97 ? ? -159.16 68.75 4 1 TYR A 133 ? ? -171.76 134.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 29 ? A GLN 1 2 1 Y 1 A ASP 30 ? A ASP 2 3 1 Y 1 A TYR 31 ? A TYR 3 4 1 Y 1 A GLY 32 ? A GLY 4 5 1 Y 1 A GLY 33 ? A GLY 5 6 1 Y 1 A LYS 34 ? A LYS 6 7 1 Y 1 A PRO 152 ? A PRO 124 8 1 Y 1 A GLU 153 ? A GLU 125 9 1 Y 1 A PRO 154 ? A PRO 126 10 1 Y 1 A ALA 155 ? A ALA 127 11 1 Y 1 A GLU 156 ? A GLU 128 12 1 Y 1 A ASN 157 ? A ASN 129 13 1 Y 1 A LEU 158 ? A LEU 130 14 1 Y 1 A TYR 159 ? A TYR 131 15 1 Y 1 A PHE 160 ? A PHE 132 16 1 Y 1 A GLN 161 ? A GLN 133 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HOH O O N N 161 HOH H1 H N N 162 HOH H2 H N N 163 ILE N N N N 164 ILE CA C N S 165 ILE C C N N 166 ILE O O N N 167 ILE CB C N S 168 ILE CG1 C N N 169 ILE CG2 C N N 170 ILE CD1 C N N 171 ILE OXT O N N 172 ILE H H N N 173 ILE H2 H N N 174 ILE HA H N N 175 ILE HB H N N 176 ILE HG12 H N N 177 ILE HG13 H N N 178 ILE HG21 H N N 179 ILE HG22 H N N 180 ILE HG23 H N N 181 ILE HD11 H N N 182 ILE HD12 H N N 183 ILE HD13 H N N 184 ILE HXT H N N 185 LEU N N N N 186 LEU CA C N S 187 LEU C C N N 188 LEU O O N N 189 LEU CB C N N 190 LEU CG C N N 191 LEU CD1 C N N 192 LEU CD2 C N N 193 LEU OXT O N N 194 LEU H H N N 195 LEU H2 H N N 196 LEU HA H N N 197 LEU HB2 H N N 198 LEU HB3 H N N 199 LEU HG H N N 200 LEU HD11 H N N 201 LEU HD12 H N N 202 LEU HD13 H N N 203 LEU HD21 H N N 204 LEU HD22 H N N 205 LEU HD23 H N N 206 LEU HXT H N N 207 LYS N N N N 208 LYS CA C N S 209 LYS C C N N 210 LYS O O N N 211 LYS CB C N N 212 LYS CG C N N 213 LYS CD C N N 214 LYS CE C N N 215 LYS NZ N N N 216 LYS OXT O N N 217 LYS H H N N 218 LYS H2 H N N 219 LYS HA H N N 220 LYS HB2 H N N 221 LYS HB3 H N N 222 LYS HG2 H N N 223 LYS HG3 H N N 224 LYS HD2 H N N 225 LYS HD3 H N N 226 LYS HE2 H N N 227 LYS HE3 H N N 228 LYS HZ1 H N N 229 LYS HZ2 H N N 230 LYS HZ3 H N N 231 LYS HXT H N N 232 MAN C1 C N S 233 MAN C2 C N S 234 MAN C3 C N S 235 MAN C4 C N S 236 MAN C5 C N R 237 MAN C6 C N N 238 MAN O1 O N N 239 MAN O2 O N N 240 MAN O3 O N N 241 MAN O4 O N N 242 MAN O5 O N N 243 MAN O6 O N N 244 MAN H1 H N N 245 MAN H2 H N N 246 MAN H3 H N N 247 MAN H4 H N N 248 MAN H5 H N N 249 MAN H61 H N N 250 MAN H62 H N N 251 MAN HO1 H N N 252 MAN HO2 H N N 253 MAN HO3 H N N 254 MAN HO4 H N N 255 MAN HO6 H N N 256 MET N N N N 257 MET CA C N S 258 MET C C N N 259 MET O O N N 260 MET CB C N N 261 MET CG C N N 262 MET SD S N N 263 MET CE C N N 264 MET OXT O N N 265 MET H H N N 266 MET H2 H N N 267 MET HA H N N 268 MET HB2 H N N 269 MET HB3 H N N 270 MET HG2 H N N 271 MET HG3 H N N 272 MET HE1 H N N 273 MET HE2 H N N 274 MET HE3 H N N 275 MET HXT H N N 276 NAG C1 C N R 277 NAG C2 C N R 278 NAG C3 C N R 279 NAG C4 C N S 280 NAG C5 C N R 281 NAG C6 C N N 282 NAG C7 C N N 283 NAG C8 C N N 284 NAG N2 N N N 285 NAG O1 O N N 286 NAG O3 O N N 287 NAG O4 O N N 288 NAG O5 O N N 289 NAG O6 O N N 290 NAG O7 O N N 291 NAG H1 H N N 292 NAG H2 H N N 293 NAG H3 H N N 294 NAG H4 H N N 295 NAG H5 H N N 296 NAG H61 H N N 297 NAG H62 H N N 298 NAG H81 H N N 299 NAG H82 H N N 300 NAG H83 H N N 301 NAG HN2 H N N 302 NAG HO1 H N N 303 NAG HO3 H N N 304 NAG HO4 H N N 305 NAG HO6 H N N 306 PHE N N N N 307 PHE CA C N S 308 PHE C C N N 309 PHE O O N N 310 PHE CB C N N 311 PHE CG C Y N 312 PHE CD1 C Y N 313 PHE CD2 C Y N 314 PHE CE1 C Y N 315 PHE CE2 C Y N 316 PHE CZ C Y N 317 PHE OXT O N N 318 PHE H H N N 319 PHE H2 H N N 320 PHE HA H N N 321 PHE HB2 H N N 322 PHE HB3 H N N 323 PHE HD1 H N N 324 PHE HD2 H N N 325 PHE HE1 H N N 326 PHE HE2 H N N 327 PHE HZ H N N 328 PHE HXT H N N 329 PRO N N N N 330 PRO CA C N S 331 PRO C C N N 332 PRO O O N N 333 PRO CB C N N 334 PRO CG C N N 335 PRO CD C N N 336 PRO OXT O N N 337 PRO H H N N 338 PRO HA H N N 339 PRO HB2 H N N 340 PRO HB3 H N N 341 PRO HG2 H N N 342 PRO HG3 H N N 343 PRO HD2 H N N 344 PRO HD3 H N N 345 PRO HXT H N N 346 SER N N N N 347 SER CA C N S 348 SER C C N N 349 SER O O N N 350 SER CB C N N 351 SER OG O N N 352 SER OXT O N N 353 SER H H N N 354 SER H2 H N N 355 SER HA H N N 356 SER HB2 H N N 357 SER HB3 H N N 358 SER HG H N N 359 SER HXT H N N 360 THR N N N N 361 THR CA C N S 362 THR C C N N 363 THR O O N N 364 THR CB C N R 365 THR OG1 O N N 366 THR CG2 C N N 367 THR OXT O N N 368 THR H H N N 369 THR H2 H N N 370 THR HA H N N 371 THR HB H N N 372 THR HG1 H N N 373 THR HG21 H N N 374 THR HG22 H N N 375 THR HG23 H N N 376 THR HXT H N N 377 TYR N N N N 378 TYR CA C N S 379 TYR C C N N 380 TYR O O N N 381 TYR CB C N N 382 TYR CG C Y N 383 TYR CD1 C Y N 384 TYR CD2 C Y N 385 TYR CE1 C Y N 386 TYR CE2 C Y N 387 TYR CZ C Y N 388 TYR OH O N N 389 TYR OXT O N N 390 TYR H H N N 391 TYR H2 H N N 392 TYR HA H N N 393 TYR HB2 H N N 394 TYR HB3 H N N 395 TYR HD1 H N N 396 TYR HD2 H N N 397 TYR HE1 H N N 398 TYR HE2 H N N 399 TYR HH H N N 400 TYR HXT H N N 401 VAL N N N N 402 VAL CA C N S 403 VAL C C N N 404 VAL O O N N 405 VAL CB C N N 406 VAL CG1 C N N 407 VAL CG2 C N N 408 VAL OXT O N N 409 VAL H H N N 410 VAL H2 H N N 411 VAL HA H N N 412 VAL HB H N N 413 VAL HG11 H N N 414 VAL HG12 H N N 415 VAL HG13 H N N 416 VAL HG21 H N N 417 VAL HG22 H N N 418 VAL HG23 H N N 419 VAL HXT H N N 420 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HOH O H1 sing N N 153 HOH O H2 sing N N 154 ILE N CA sing N N 155 ILE N H sing N N 156 ILE N H2 sing N N 157 ILE CA C sing N N 158 ILE CA CB sing N N 159 ILE CA HA sing N N 160 ILE C O doub N N 161 ILE C OXT sing N N 162 ILE CB CG1 sing N N 163 ILE CB CG2 sing N N 164 ILE CB HB sing N N 165 ILE CG1 CD1 sing N N 166 ILE CG1 HG12 sing N N 167 ILE CG1 HG13 sing N N 168 ILE CG2 HG21 sing N N 169 ILE CG2 HG22 sing N N 170 ILE CG2 HG23 sing N N 171 ILE CD1 HD11 sing N N 172 ILE CD1 HD12 sing N N 173 ILE CD1 HD13 sing N N 174 ILE OXT HXT sing N N 175 LEU N CA sing N N 176 LEU N H sing N N 177 LEU N H2 sing N N 178 LEU CA C sing N N 179 LEU CA CB sing N N 180 LEU CA HA sing N N 181 LEU C O doub N N 182 LEU C OXT sing N N 183 LEU CB CG sing N N 184 LEU CB HB2 sing N N 185 LEU CB HB3 sing N N 186 LEU CG CD1 sing N N 187 LEU CG CD2 sing N N 188 LEU CG HG sing N N 189 LEU CD1 HD11 sing N N 190 LEU CD1 HD12 sing N N 191 LEU CD1 HD13 sing N N 192 LEU CD2 HD21 sing N N 193 LEU CD2 HD22 sing N N 194 LEU CD2 HD23 sing N N 195 LEU OXT HXT sing N N 196 LYS N CA sing N N 197 LYS N H sing N N 198 LYS N H2 sing N N 199 LYS CA C sing N N 200 LYS CA CB sing N N 201 LYS CA HA sing N N 202 LYS C O doub N N 203 LYS C OXT sing N N 204 LYS CB CG sing N N 205 LYS CB HB2 sing N N 206 LYS CB HB3 sing N N 207 LYS CG CD sing N N 208 LYS CG HG2 sing N N 209 LYS CG HG3 sing N N 210 LYS CD CE sing N N 211 LYS CD HD2 sing N N 212 LYS CD HD3 sing N N 213 LYS CE NZ sing N N 214 LYS CE HE2 sing N N 215 LYS CE HE3 sing N N 216 LYS NZ HZ1 sing N N 217 LYS NZ HZ2 sing N N 218 LYS NZ HZ3 sing N N 219 LYS OXT HXT sing N N 220 MAN C1 C2 sing N N 221 MAN C1 O1 sing N N 222 MAN C1 O5 sing N N 223 MAN C1 H1 sing N N 224 MAN C2 C3 sing N N 225 MAN C2 O2 sing N N 226 MAN C2 H2 sing N N 227 MAN C3 C4 sing N N 228 MAN C3 O3 sing N N 229 MAN C3 H3 sing N N 230 MAN C4 C5 sing N N 231 MAN C4 O4 sing N N 232 MAN C4 H4 sing N N 233 MAN C5 C6 sing N N 234 MAN C5 O5 sing N N 235 MAN C5 H5 sing N N 236 MAN C6 O6 sing N N 237 MAN C6 H61 sing N N 238 MAN C6 H62 sing N N 239 MAN O1 HO1 sing N N 240 MAN O2 HO2 sing N N 241 MAN O3 HO3 sing N N 242 MAN O4 HO4 sing N N 243 MAN O6 HO6 sing N N 244 MET N CA sing N N 245 MET N H sing N N 246 MET N H2 sing N N 247 MET CA C sing N N 248 MET CA CB sing N N 249 MET CA HA sing N N 250 MET C O doub N N 251 MET C OXT sing N N 252 MET CB CG sing N N 253 MET CB HB2 sing N N 254 MET CB HB3 sing N N 255 MET CG SD sing N N 256 MET CG HG2 sing N N 257 MET CG HG3 sing N N 258 MET SD CE sing N N 259 MET CE HE1 sing N N 260 MET CE HE2 sing N N 261 MET CE HE3 sing N N 262 MET OXT HXT sing N N 263 NAG C1 C2 sing N N 264 NAG C1 O1 sing N N 265 NAG C1 O5 sing N N 266 NAG C1 H1 sing N N 267 NAG C2 C3 sing N N 268 NAG C2 N2 sing N N 269 NAG C2 H2 sing N N 270 NAG C3 C4 sing N N 271 NAG C3 O3 sing N N 272 NAG C3 H3 sing N N 273 NAG C4 C5 sing N N 274 NAG C4 O4 sing N N 275 NAG C4 H4 sing N N 276 NAG C5 C6 sing N N 277 NAG C5 O5 sing N N 278 NAG C5 H5 sing N N 279 NAG C6 O6 sing N N 280 NAG C6 H61 sing N N 281 NAG C6 H62 sing N N 282 NAG C7 C8 sing N N 283 NAG C7 N2 sing N N 284 NAG C7 O7 doub N N 285 NAG C8 H81 sing N N 286 NAG C8 H82 sing N N 287 NAG C8 H83 sing N N 288 NAG N2 HN2 sing N N 289 NAG O1 HO1 sing N N 290 NAG O3 HO3 sing N N 291 NAG O4 HO4 sing N N 292 NAG O6 HO6 sing N N 293 PHE N CA sing N N 294 PHE N H sing N N 295 PHE N H2 sing N N 296 PHE CA C sing N N 297 PHE CA CB sing N N 298 PHE CA HA sing N N 299 PHE C O doub N N 300 PHE C OXT sing N N 301 PHE CB CG sing N N 302 PHE CB HB2 sing N N 303 PHE CB HB3 sing N N 304 PHE CG CD1 doub Y N 305 PHE CG CD2 sing Y N 306 PHE CD1 CE1 sing Y N 307 PHE CD1 HD1 sing N N 308 PHE CD2 CE2 doub Y N 309 PHE CD2 HD2 sing N N 310 PHE CE1 CZ doub Y N 311 PHE CE1 HE1 sing N N 312 PHE CE2 CZ sing Y N 313 PHE CE2 HE2 sing N N 314 PHE CZ HZ sing N N 315 PHE OXT HXT sing N N 316 PRO N CA sing N N 317 PRO N CD sing N N 318 PRO N H sing N N 319 PRO CA C sing N N 320 PRO CA CB sing N N 321 PRO CA HA sing N N 322 PRO C O doub N N 323 PRO C OXT sing N N 324 PRO CB CG sing N N 325 PRO CB HB2 sing N N 326 PRO CB HB3 sing N N 327 PRO CG CD sing N N 328 PRO CG HG2 sing N N 329 PRO CG HG3 sing N N 330 PRO CD HD2 sing N N 331 PRO CD HD3 sing N N 332 PRO OXT HXT sing N N 333 SER N CA sing N N 334 SER N H sing N N 335 SER N H2 sing N N 336 SER CA C sing N N 337 SER CA CB sing N N 338 SER CA HA sing N N 339 SER C O doub N N 340 SER C OXT sing N N 341 SER CB OG sing N N 342 SER CB HB2 sing N N 343 SER CB HB3 sing N N 344 SER OG HG sing N N 345 SER OXT HXT sing N N 346 THR N CA sing N N 347 THR N H sing N N 348 THR N H2 sing N N 349 THR CA C sing N N 350 THR CA CB sing N N 351 THR CA HA sing N N 352 THR C O doub N N 353 THR C OXT sing N N 354 THR CB OG1 sing N N 355 THR CB CG2 sing N N 356 THR CB HB sing N N 357 THR OG1 HG1 sing N N 358 THR CG2 HG21 sing N N 359 THR CG2 HG22 sing N N 360 THR CG2 HG23 sing N N 361 THR OXT HXT sing N N 362 TYR N CA sing N N 363 TYR N H sing N N 364 TYR N H2 sing N N 365 TYR CA C sing N N 366 TYR CA CB sing N N 367 TYR CA HA sing N N 368 TYR C O doub N N 369 TYR C OXT sing N N 370 TYR CB CG sing N N 371 TYR CB HB2 sing N N 372 TYR CB HB3 sing N N 373 TYR CG CD1 doub Y N 374 TYR CG CD2 sing Y N 375 TYR CD1 CE1 sing Y N 376 TYR CD1 HD1 sing N N 377 TYR CD2 CE2 doub Y N 378 TYR CD2 HD2 sing N N 379 TYR CE1 CZ doub Y N 380 TYR CE1 HE1 sing N N 381 TYR CE2 CZ sing Y N 382 TYR CE2 HE2 sing N N 383 TYR CZ OH sing N N 384 TYR OH HH sing N N 385 TYR OXT HXT sing N N 386 VAL N CA sing N N 387 VAL N H sing N N 388 VAL N H2 sing N N 389 VAL CA C sing N N 390 VAL CA CB sing N N 391 VAL CA HA sing N N 392 VAL C O doub N N 393 VAL C OXT sing N N 394 VAL CB CG1 sing N N 395 VAL CB CG2 sing N N 396 VAL CB HB sing N N 397 VAL CG1 HG11 sing N N 398 VAL CG1 HG12 sing N N 399 VAL CG1 HG13 sing N N 400 VAL CG2 HG21 sing N N 401 VAL CG2 HG22 sing N N 402 VAL CG2 HG23 sing N N 403 VAL OXT HXT sing N N 404 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 501 n B 2 NAG 2 B NAG 2 A NAG 502 n B 2 BMA 3 B BMA 3 A BMA 503 n B 2 MAN 4 B MAN 4 A MAN 504 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-3DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c3-d1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2X44 _pdbx_initial_refinement_model.details ? #