data_4KLK # _entry.id 4KLK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4KLK RCSB RCSB079490 WWPDB D_1000079490 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id MCSG-APC110537 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4KLK _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-07 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Wu, R.' 2 'Endres, M.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Phage-related protein DUF2815 from Enterococcus faecalis' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Wu, R.' 2 primary 'Endres, M.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 40.527 _cell.length_b 68.133 _cell.length_c 86.807 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4KLK _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4KLK _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phage-related protein DUF2815' 20098.926 1 ? ? 'UNP residues 4-180' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn ETHANOL 46.068 1 ? ? ? ? 4 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAVTGTKVITNQVRLSFVHVLEPHA(MSE)EEGQEKKYSC(MSE)LIIPKDDKETLKA(MSE)KEAIKTAYEGAKGDKL KGVKFERLKTTLRDGDEE(MSE)DTEERPEFENA(MSE)FINVSSKTKPQVVKREDGVLVKTDDPDEVYSGVYAIASINF YAYSTAGNKGVTAGLNNILTLCKGDFLGGRANAESDFGDL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAVTGTKVITNQVRLSFVHVLEPHAMEEGQEKKYSCMLIIPKDDKETLKAMKEAIKTAYEGAKGDKLKGVKFERLKTTL RDGDEEMDTEERPEFENAMFINVSSKTKPQVVKREDGVLVKTDDPDEVYSGVYAIASINFYAYSTAGNKGVTAGLNNILT LCKGDFLGGRANAESDFGDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC110537 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 VAL n 1 5 THR n 1 6 GLY n 1 7 THR n 1 8 LYS n 1 9 VAL n 1 10 ILE n 1 11 THR n 1 12 ASN n 1 13 GLN n 1 14 VAL n 1 15 ARG n 1 16 LEU n 1 17 SER n 1 18 PHE n 1 19 VAL n 1 20 HIS n 1 21 VAL n 1 22 LEU n 1 23 GLU n 1 24 PRO n 1 25 HIS n 1 26 ALA n 1 27 MSE n 1 28 GLU n 1 29 GLU n 1 30 GLY n 1 31 GLN n 1 32 GLU n 1 33 LYS n 1 34 LYS n 1 35 TYR n 1 36 SER n 1 37 CYS n 1 38 MSE n 1 39 LEU n 1 40 ILE n 1 41 ILE n 1 42 PRO n 1 43 LYS n 1 44 ASP n 1 45 ASP n 1 46 LYS n 1 47 GLU n 1 48 THR n 1 49 LEU n 1 50 LYS n 1 51 ALA n 1 52 MSE n 1 53 LYS n 1 54 GLU n 1 55 ALA n 1 56 ILE n 1 57 LYS n 1 58 THR n 1 59 ALA n 1 60 TYR n 1 61 GLU n 1 62 GLY n 1 63 ALA n 1 64 LYS n 1 65 GLY n 1 66 ASP n 1 67 LYS n 1 68 LEU n 1 69 LYS n 1 70 GLY n 1 71 VAL n 1 72 LYS n 1 73 PHE n 1 74 GLU n 1 75 ARG n 1 76 LEU n 1 77 LYS n 1 78 THR n 1 79 THR n 1 80 LEU n 1 81 ARG n 1 82 ASP n 1 83 GLY n 1 84 ASP n 1 85 GLU n 1 86 GLU n 1 87 MSE n 1 88 ASP n 1 89 THR n 1 90 GLU n 1 91 GLU n 1 92 ARG n 1 93 PRO n 1 94 GLU n 1 95 PHE n 1 96 GLU n 1 97 ASN n 1 98 ALA n 1 99 MSE n 1 100 PHE n 1 101 ILE n 1 102 ASN n 1 103 VAL n 1 104 SER n 1 105 SER n 1 106 LYS n 1 107 THR n 1 108 LYS n 1 109 PRO n 1 110 GLN n 1 111 VAL n 1 112 VAL n 1 113 LYS n 1 114 ARG n 1 115 GLU n 1 116 ASP n 1 117 GLY n 1 118 VAL n 1 119 LEU n 1 120 VAL n 1 121 LYS n 1 122 THR n 1 123 ASP n 1 124 ASP n 1 125 PRO n 1 126 ASP n 1 127 GLU n 1 128 VAL n 1 129 TYR n 1 130 SER n 1 131 GLY n 1 132 VAL n 1 133 TYR n 1 134 ALA n 1 135 ILE n 1 136 ALA n 1 137 SER n 1 138 ILE n 1 139 ASN n 1 140 PHE n 1 141 TYR n 1 142 ALA n 1 143 TYR n 1 144 SER n 1 145 THR n 1 146 ALA n 1 147 GLY n 1 148 ASN n 1 149 LYS n 1 150 GLY n 1 151 VAL n 1 152 THR n 1 153 ALA n 1 154 GLY n 1 155 LEU n 1 156 ASN n 1 157 ASN n 1 158 ILE n 1 159 LEU n 1 160 THR n 1 161 LEU n 1 162 CYS n 1 163 LYS n 1 164 GLY n 1 165 ASP n 1 166 PHE n 1 167 LEU n 1 168 GLY n 1 169 GLY n 1 170 ARG n 1 171 ALA n 1 172 ASN n 1 173 ALA n 1 174 GLU n 1 175 SER n 1 176 ASP n 1 177 PHE n 1 178 GLY n 1 179 ASP n 1 180 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene EF_0322 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain V583 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterococcus faecalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226185 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG68 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q838W1_ENTFA _struct_ref.pdbx_db_accession Q838W1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VTGTKVITNQVRLSFVHVLEPHAMEEGQEKKYSCMLIIPKDDKETLKAMKEAIKTAYEGAKGDKLKGVKFERLKTTLRDG DEEMDTEERPEFENAMFINVSSKTKPQVVKREDGVLVKTDDPDEVYSGVYAIASINFYAYSTAGNKGVTAGLNNILTLCK GDFLGGRANAESDFGDL ; _struct_ref.pdbx_align_begin 4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4KLK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 180 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q838W1 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 180 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 180 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KLK SER A 1 ? UNP Q838W1 ? ? 'EXPRESSION TAG' -2 1 1 4KLK ASN A 2 ? UNP Q838W1 ? ? 'EXPRESSION TAG' -1 2 1 4KLK ALA A 3 ? UNP Q838W1 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4KLK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details '0.1 M Tris buffer, 15% ethanol, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-10-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 4KLK _reflns.d_resolution_high 1.930 _reflns.d_resolution_low 36.6 _reflns.number_obs 18291 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_netI_over_sigmaI 12.400 _reflns.pdbx_chi_squared 4.645 _reflns.pdbx_redundancy 6.400 _reflns.percent_possible_obs 98.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 18291 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 46.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.930 1.960 ? ? ? 0.681 2.02 ? 0.870 5.300 ? 791 88.500 1 1 1.960 2.000 ? ? ? 0.544 ? ? 0.926 5.600 ? 834 90.600 2 1 2.000 2.040 ? ? ? 0.500 ? ? 0.953 5.900 ? 848 92.000 3 1 2.040 2.080 ? ? ? 0.446 ? ? 1.094 5.900 ? 857 95.500 4 1 2.080 2.120 ? ? ? 0.414 ? ? 1.267 6.100 ? 918 99.500 5 1 2.120 2.170 ? ? ? 0.354 ? ? 1.273 6.600 ? 907 99.600 6 1 2.170 2.230 ? ? ? 0.326 ? ? 1.391 6.700 ? 905 99.700 7 1 2.230 2.290 ? ? ? 0.275 ? ? 1.640 6.800 ? 919 99.500 8 1 2.290 2.360 ? ? ? 0.242 ? ? 1.807 6.800 ? 926 99.800 9 1 2.360 2.430 ? ? ? 0.211 ? ? 2.067 6.800 ? 912 99.900 10 1 2.430 2.520 ? ? ? 0.178 ? ? 2.467 6.800 ? 935 99.900 11 1 2.520 2.620 ? ? ? 0.171 ? ? 2.929 6.800 ? 919 99.900 12 1 2.620 2.740 ? ? ? 0.155 ? ? 3.506 6.800 ? 944 100.000 13 1 2.740 2.880 ? ? ? 0.129 ? ? 3.974 6.900 ? 927 100.000 14 1 2.880 3.060 ? ? ? 0.120 ? ? 5.741 6.800 ? 926 99.900 15 1 3.060 3.300 ? ? ? 0.104 ? ? 7.193 6.500 ? 935 100.000 16 1 3.300 3.630 ? ? ? 0.089 ? ? 8.268 6.300 ? 948 99.800 17 1 3.630 4.160 ? ? ? 0.079 ? ? 9.660 6.300 ? 957 99.600 18 1 4.160 5.240 ? ? ? 0.074 ? ? 10.777 6.500 ? 967 99.600 19 1 5.240 50.000 ? ? ? 0.080 ? ? 20.936 6.300 ? 1016 96.800 20 1 # _refine.entry_id 4KLK _refine.ls_d_res_high 1.9300 _refine.ls_d_res_low 36.6 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.3200 _refine.ls_number_reflns_obs 18248 _refine.ls_number_reflns_all 18248 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.2080 _refine.ls_R_factor_obs 0.2080 _refine.ls_R_factor_R_work 0.2060 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2501 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 936 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 59.7512 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.3300 _refine.aniso_B[2][2] -4.8400 _refine.aniso_B[3][3] 7.1700 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9620 _refine.correlation_coeff_Fo_to_Fc_free 0.9390 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1410 _refine.pdbx_overall_ESU_R_Free 0.1410 _refine.overall_SU_ML 0.1470 _refine.overall_SU_B 11.2260 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 146.750 _refine.B_iso_min 31.450 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1295 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 1382 _refine_hist.d_res_high 1.9300 _refine_hist.d_res_low 36.6 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1348 0.016 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1304 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1812 1.762 1.994 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3028 0.801 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 171 7.737 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 63 35.601 25.714 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 243 16.660 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 22.638 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 203 0.104 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1507 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 275 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9280 _refine_ls_shell.d_res_low 1.9780 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 80.3500 _refine_ls_shell.number_reflns_R_work 1012 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3460 _refine_ls_shell.R_factor_R_free 0.3330 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 55 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1067 _refine_ls_shell.number_reflns_obs 1067 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4KLK _struct.title 'Phage-related protein DUF2815 from Enterococcus faecalis' _struct.pdbx_descriptor 'Phage-related protein DUF2815' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KLK _struct_keywords.text ;structural genomics, phage-related protein, DUF2815, pfam10991, PSI-Biology, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 45 ? ALA A 63 ? ASP A 45 ALA A 63 1 ? 19 HELX_P HELX_P2 2 LYS A 72 ? LEU A 76 ? LYS A 72 LEU A 76 5 ? 5 HELX_P HELX_P3 3 GLY A 83 ? MSE A 87 ? GLY A 83 MSE A 87 1 ? 5 HELX_P HELX_P4 4 ARG A 92 ? GLU A 96 ? ARG A 92 GLU A 96 5 ? 5 HELX_P HELX_P5 5 ASN A 172 ? GLY A 178 ? ASN A 172 GLY A 178 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 26 C ? ? ? 1_555 A MSE 27 N ? ? A ALA 26 A MSE 27 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale ? ? A MSE 27 C ? ? ? 1_555 A GLU 28 N ? ? A MSE 27 A GLU 28 1_555 ? ? ? ? ? ? ? 1.346 ? covale3 covale ? ? A CYS 37 C ? ? ? 1_555 A MSE 38 N ? ? A CYS 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.312 ? covale4 covale ? ? A MSE 38 C ? ? ? 1_555 A LEU 39 N ? ? A MSE 38 A LEU 39 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A ALA 51 C ? ? ? 1_555 A MSE 52 N ? ? A ALA 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 52 C ? ? ? 1_555 A LYS 53 N ? ? A MSE 52 A LYS 53 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A GLU 86 C ? ? ? 1_555 A MSE 87 N ? ? A GLU 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.323 ? covale8 covale ? ? A MSE 87 C ? ? ? 1_555 A ASP 88 N ? ? A MSE 87 A ASP 88 1_555 ? ? ? ? ? ? ? 1.325 ? covale9 covale ? ? A ALA 98 C ? ? ? 1_555 A MSE 99 N ? ? A ALA 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? A MSE 99 C ? ? ? 1_555 A PHE 100 N ? ? A MSE 99 A PHE 100 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 8 ? ILE A 10 ? LYS A 8 ILE A 10 A 2 TYR A 133 ? SER A 144 ? TYR A 133 SER A 144 A 3 VAL A 14 ? HIS A 25 ? VAL A 14 HIS A 25 A 4 LYS A 34 ? PRO A 42 ? LYS A 34 PRO A 42 A 5 ALA A 98 ? SER A 105 ? ALA A 98 SER A 105 A 6 LYS A 149 ? THR A 160 ? LYS A 149 THR A 160 A 7 TYR A 133 ? SER A 144 ? TYR A 133 SER A 144 B 1 ARG A 81 ? ASP A 82 ? ARG A 81 ASP A 82 B 2 ALA A 98 ? SER A 105 ? ALA A 98 SER A 105 B 3 LYS A 149 ? THR A 160 ? LYS A 149 THR A 160 B 4 GLN A 110 ? GLU A 115 ? GLN A 110 GLU A 115 B 5 VAL A 118 ? LYS A 121 ? VAL A 118 LYS A 121 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 9 ? N VAL A 9 O ILE A 138 ? O ILE A 138 A 2 3 O ALA A 134 ? O ALA A 134 N VAL A 14 ? N VAL A 14 A 3 4 N SER A 17 ? N SER A 17 O MSE A 38 ? O MSE A 38 A 4 5 N CYS A 37 ? N CYS A 37 O VAL A 103 ? O VAL A 103 A 5 6 N SER A 104 ? N SER A 104 O LEU A 155 ? O LEU A 155 A 6 7 O LEU A 159 ? O LEU A 159 N ILE A 135 ? N ILE A 135 B 1 2 N ARG A 81 ? N ARG A 81 O PHE A 100 ? O PHE A 100 B 2 3 N SER A 104 ? N SER A 104 O LEU A 155 ? O LEU A 155 B 3 4 O ILE A 158 ? O ILE A 158 N GLN A 110 ? N GLN A 110 B 4 5 N GLU A 115 ? N GLU A 115 O VAL A 118 ? O VAL A 118 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL A 401' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EOH A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ASP A 126 ? ASP A 126 . ? 1_555 ? 2 AC1 2 GLY A 164 ? GLY A 164 . ? 1_555 ? 3 AC2 3 ASP A 88 ? ASP A 88 . ? 1_555 ? 4 AC2 3 THR A 89 ? THR A 89 . ? 1_555 ? 5 AC2 3 HOH D . ? HOH A 568 . ? 1_555 ? # _atom_sites.entry_id 4KLK _atom_sites.fract_transf_matrix[1][1] 0.024675 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014677 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011520 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 VAL 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 GLY 6 6 ? ? ? A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 MSE 27 27 27 MSE MSE A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 MSE 38 38 38 MSE MSE A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 MSE 52 52 52 MSE MSE A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 LYS 64 64 ? ? ? A . n A 1 65 GLY 65 65 ? ? ? A . n A 1 66 ASP 66 66 ? ? ? A . n A 1 67 LYS 67 67 ? ? ? A . n A 1 68 LEU 68 68 ? ? ? A . n A 1 69 LYS 69 69 ? ? ? A . n A 1 70 GLY 70 70 ? ? ? A . n A 1 71 VAL 71 71 ? ? ? A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 MSE 87 87 87 MSE MSE A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 MSE 99 99 99 MSE MSE A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 CYS 162 162 162 CYS CYS A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 ARG 170 170 170 ARG ARG A . n A 1 171 ALA 171 171 171 ALA ALA A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ASP 176 176 176 ASP ASP A . n A 1 177 PHE 177 177 177 PHE PHE A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 LEU 180 180 180 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 401 401 GOL GOL A . C 3 EOH 1 402 402 EOH EOH A . D 4 HOH 1 501 1 HOH HOH A . D 4 HOH 2 502 2 HOH HOH A . D 4 HOH 3 503 3 HOH HOH A . D 4 HOH 4 504 4 HOH HOH A . D 4 HOH 5 505 5 HOH HOH A . D 4 HOH 6 506 6 HOH HOH A . D 4 HOH 7 507 7 HOH HOH A . D 4 HOH 8 508 8 HOH HOH A . D 4 HOH 9 509 9 HOH HOH A . D 4 HOH 10 510 10 HOH HOH A . D 4 HOH 11 511 11 HOH HOH A . D 4 HOH 12 512 12 HOH HOH A . D 4 HOH 13 513 13 HOH HOH A . D 4 HOH 14 514 14 HOH HOH A . D 4 HOH 15 515 15 HOH HOH A . D 4 HOH 16 516 16 HOH HOH A . D 4 HOH 17 517 17 HOH HOH A . D 4 HOH 18 518 18 HOH HOH A . D 4 HOH 19 519 19 HOH HOH A . D 4 HOH 20 520 20 HOH HOH A . D 4 HOH 21 521 21 HOH HOH A . D 4 HOH 22 522 22 HOH HOH A . D 4 HOH 23 523 23 HOH HOH A . D 4 HOH 24 524 24 HOH HOH A . D 4 HOH 25 525 25 HOH HOH A . D 4 HOH 26 526 26 HOH HOH A . D 4 HOH 27 527 27 HOH HOH A . D 4 HOH 28 528 28 HOH HOH A . D 4 HOH 29 529 29 HOH HOH A . D 4 HOH 30 530 30 HOH HOH A . D 4 HOH 31 531 31 HOH HOH A . D 4 HOH 32 532 32 HOH HOH A . D 4 HOH 33 533 33 HOH HOH A . D 4 HOH 34 534 34 HOH HOH A . D 4 HOH 35 535 35 HOH HOH A . D 4 HOH 36 536 36 HOH HOH A . D 4 HOH 37 537 37 HOH HOH A . D 4 HOH 38 538 38 HOH HOH A . D 4 HOH 39 539 39 HOH HOH A . D 4 HOH 40 540 40 HOH HOH A . D 4 HOH 41 541 41 HOH HOH A . D 4 HOH 42 542 42 HOH HOH A . D 4 HOH 43 543 43 HOH HOH A . D 4 HOH 44 544 44 HOH HOH A . D 4 HOH 45 545 45 HOH HOH A . D 4 HOH 46 546 46 HOH HOH A . D 4 HOH 47 547 47 HOH HOH A . D 4 HOH 48 548 48 HOH HOH A . D 4 HOH 49 549 49 HOH HOH A . D 4 HOH 50 550 50 HOH HOH A . D 4 HOH 51 551 51 HOH HOH A . D 4 HOH 52 552 52 HOH HOH A . D 4 HOH 53 553 53 HOH HOH A . D 4 HOH 54 554 54 HOH HOH A . D 4 HOH 55 555 55 HOH HOH A . D 4 HOH 56 556 56 HOH HOH A . D 4 HOH 57 557 57 HOH HOH A . D 4 HOH 58 558 58 HOH HOH A . D 4 HOH 59 559 59 HOH HOH A . D 4 HOH 60 560 60 HOH HOH A . D 4 HOH 61 561 61 HOH HOH A . D 4 HOH 62 562 62 HOH HOH A . D 4 HOH 63 563 63 HOH HOH A . D 4 HOH 64 564 64 HOH HOH A . D 4 HOH 65 565 65 HOH HOH A . D 4 HOH 66 566 66 HOH HOH A . D 4 HOH 67 567 67 HOH HOH A . D 4 HOH 68 568 68 HOH HOH A . D 4 HOH 69 569 69 HOH HOH A . D 4 HOH 70 570 70 HOH HOH A . D 4 HOH 71 571 71 HOH HOH A . D 4 HOH 72 572 72 HOH HOH A . D 4 HOH 73 573 73 HOH HOH A . D 4 HOH 74 574 74 HOH HOH A . D 4 HOH 75 575 75 HOH HOH A . D 4 HOH 76 576 76 HOH HOH A . D 4 HOH 77 577 77 HOH HOH A . D 4 HOH 78 578 78 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 27 A MSE 27 ? MET SELENOMETHIONINE 2 A MSE 38 A MSE 38 ? MET SELENOMETHIONINE 3 A MSE 52 A MSE 52 ? MET SELENOMETHIONINE 4 A MSE 87 A MSE 87 ? MET SELENOMETHIONINE 5 A MSE 99 A MSE 99 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 1 1 2016-04-20 3 'Structure model' 1 2 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 19.0239 _pdbx_refine_tls.origin_y 58.5566 _pdbx_refine_tls.origin_z 15.9590 _pdbx_refine_tls.T[1][1] 0.3003 _pdbx_refine_tls.T[2][2] 0.2670 _pdbx_refine_tls.T[3][3] 0.0462 _pdbx_refine_tls.T[1][2] 0.0225 _pdbx_refine_tls.T[1][3] 0.0273 _pdbx_refine_tls.T[2][3] 0.0318 _pdbx_refine_tls.L[1][1] 0.8658 _pdbx_refine_tls.L[2][2] 5.8892 _pdbx_refine_tls.L[3][3] 0.3673 _pdbx_refine_tls.L[1][2] -0.0442 _pdbx_refine_tls.L[1][3] -0.1183 _pdbx_refine_tls.L[2][3] 1.2936 _pdbx_refine_tls.S[1][1] 0.0017 _pdbx_refine_tls.S[2][2] 0.0814 _pdbx_refine_tls.S[3][3] -0.0832 _pdbx_refine_tls.S[1][2] 0.0698 _pdbx_refine_tls.S[1][3] 0.1206 _pdbx_refine_tls.S[2][3] -0.3599 _pdbx_refine_tls.S[2][1] -0.8809 _pdbx_refine_tls.S[3][1] -0.1527 _pdbx_refine_tls.S[3][2] 0.1404 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 7 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 180 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 6 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 MLPHARE . ? ? ? ? phasing ? ? ? 10 DM . ? ? ? ? phasing ? ? ? 11 SOLVE . ? ? ? ? phasing ? ? ? 12 RESOLVE . ? ? ? ? phasing ? ? ? 13 HKL-3000 . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 12 ? ? -78.12 -164.22 2 1 SER A 144 ? ? -160.70 93.39 3 1 ASN A 156 ? ? -105.61 -73.29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A VAL 4 ? A VAL 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A GLY 6 ? A GLY 6 7 1 Y 1 A LYS 64 ? A LYS 64 8 1 Y 1 A GLY 65 ? A GLY 65 9 1 Y 1 A ASP 66 ? A ASP 66 10 1 Y 1 A LYS 67 ? A LYS 67 11 1 Y 1 A LEU 68 ? A LEU 68 12 1 Y 1 A LYS 69 ? A LYS 69 13 1 Y 1 A GLY 70 ? A GLY 70 14 1 Y 1 A VAL 71 ? A VAL 71 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 ETHANOL EOH 4 water HOH #