data_4KQI # _entry.id 4KQI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4KQI RCSB RCSB079667 WWPDB D_1000079667 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4KQH 'Crystal structure of CobT E317A' unspecified PDB 4KQF 'Crystal structure of CobT E174A complexed with adenine' unspecified PDB 4KQG 'Crystal structure of CobT E174A complexed with DMB' unspecified PDB 1D0V 'Crystal structure of wild type CobT complexed with its reaction products' unspecified PDB 4KQJ . unspecified PDB 4KQK . unspecified # _pdbx_database_status.entry_id 4KQI _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chan, C.H.' 1 'Newmister, S.A.' 2 'Taylor, K.C.' 3 'Claas, K.R.' 4 'Rayment, I.' 5 'Escalante-Semerena, J.C.' 6 # _citation.id primary _citation.title 'Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.' _citation.journal_abbrev Biochim.Biophys.Acta _citation.journal_volume 1840 _citation.page_first 464 _citation.page_last 475 _citation.year 2014 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24121107 _citation.pdbx_database_id_DOI 10.1016/j.bbagen.2013.09.038 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chan, C.H.' 1 primary 'Newmister, S.A.' 2 primary 'Talyor, K.' 3 primary 'Claas, K.R.' 4 primary 'Rayment, I.' 5 primary 'Escalante-Semerena, J.C.' 6 # _cell.length_a 46.753 _cell.length_b 71.278 _cell.length_c 89.444 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4KQI _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.entry_id 4KQI _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase' 36587.531 1 2.4.2.21 E317A ? ? 2 non-polymer syn "ALPHA-RIBAZOLE-5'-PHOSPHATE" 358.284 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 non-polymer syn 'NICOTINIC ACID' 123.109 1 ? ? ? ? 5 water nat water 18.015 231 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NN:DBI PRT, N(1)-alpha-phosphoribosyltransferase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQTLHALLRDIPAPDAEAMARAQQHIDGLLKPPGSLGRLETLAVQLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVS PKIVTAIQAANMTRGTTGVCVLAAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRLQAEALLLEVSRYTC DLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVRRAIAINQPNPRDGIDVLSKVGG FDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQIAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGAGSG AALAMPIVEAACAMFHNMGELAASNIVLPEGNANAT ; _entity_poly.pdbx_seq_one_letter_code_can ;MQTLHALLRDIPAPDAEAMARAQQHIDGLLKPPGSLGRLETLAVQLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVS PKIVTAIQAANMTRGTTGVCVLAAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRLQAEALLLEVSRYTC DLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVRRAIAINQPNPRDGIDVLSKVGG FDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQIAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGAGSG AALAMPIVEAACAMFHNMGELAASNIVLPEGNANAT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 THR n 1 4 LEU n 1 5 HIS n 1 6 ALA n 1 7 LEU n 1 8 LEU n 1 9 ARG n 1 10 ASP n 1 11 ILE n 1 12 PRO n 1 13 ALA n 1 14 PRO n 1 15 ASP n 1 16 ALA n 1 17 GLU n 1 18 ALA n 1 19 MET n 1 20 ALA n 1 21 ARG n 1 22 ALA n 1 23 GLN n 1 24 GLN n 1 25 HIS n 1 26 ILE n 1 27 ASP n 1 28 GLY n 1 29 LEU n 1 30 LEU n 1 31 LYS n 1 32 PRO n 1 33 PRO n 1 34 GLY n 1 35 SER n 1 36 LEU n 1 37 GLY n 1 38 ARG n 1 39 LEU n 1 40 GLU n 1 41 THR n 1 42 LEU n 1 43 ALA n 1 44 VAL n 1 45 GLN n 1 46 LEU n 1 47 ALA n 1 48 GLY n 1 49 MET n 1 50 PRO n 1 51 GLY n 1 52 LEU n 1 53 ASN n 1 54 GLY n 1 55 THR n 1 56 PRO n 1 57 GLN n 1 58 VAL n 1 59 GLY n 1 60 GLU n 1 61 LYS n 1 62 ALA n 1 63 VAL n 1 64 LEU n 1 65 VAL n 1 66 MET n 1 67 CYS n 1 68 ALA n 1 69 ASP n 1 70 HIS n 1 71 GLY n 1 72 VAL n 1 73 TRP n 1 74 ASP n 1 75 GLU n 1 76 GLY n 1 77 VAL n 1 78 ALA n 1 79 VAL n 1 80 SER n 1 81 PRO n 1 82 LYS n 1 83 ILE n 1 84 VAL n 1 85 THR n 1 86 ALA n 1 87 ILE n 1 88 GLN n 1 89 ALA n 1 90 ALA n 1 91 ASN n 1 92 MET n 1 93 THR n 1 94 ARG n 1 95 GLY n 1 96 THR n 1 97 THR n 1 98 GLY n 1 99 VAL n 1 100 CYS n 1 101 VAL n 1 102 LEU n 1 103 ALA n 1 104 ALA n 1 105 GLN n 1 106 ALA n 1 107 GLY n 1 108 ALA n 1 109 LYS n 1 110 VAL n 1 111 HIS n 1 112 VAL n 1 113 ILE n 1 114 ASP n 1 115 VAL n 1 116 GLY n 1 117 ILE n 1 118 ASP n 1 119 ALA n 1 120 GLU n 1 121 PRO n 1 122 ILE n 1 123 PRO n 1 124 GLY n 1 125 VAL n 1 126 VAL n 1 127 ASN n 1 128 MET n 1 129 ARG n 1 130 VAL n 1 131 ALA n 1 132 ARG n 1 133 GLY n 1 134 CYS n 1 135 GLY n 1 136 ASN n 1 137 ILE n 1 138 ALA n 1 139 VAL n 1 140 GLY n 1 141 PRO n 1 142 ALA n 1 143 MET n 1 144 SER n 1 145 ARG n 1 146 LEU n 1 147 GLN n 1 148 ALA n 1 149 GLU n 1 150 ALA n 1 151 LEU n 1 152 LEU n 1 153 LEU n 1 154 GLU n 1 155 VAL n 1 156 SER n 1 157 ARG n 1 158 TYR n 1 159 THR n 1 160 CYS n 1 161 ASP n 1 162 LEU n 1 163 ALA n 1 164 GLN n 1 165 ARG n 1 166 GLY n 1 167 VAL n 1 168 THR n 1 169 LEU n 1 170 PHE n 1 171 GLY n 1 172 VAL n 1 173 GLY n 1 174 GLU n 1 175 LEU n 1 176 GLY n 1 177 MET n 1 178 ALA n 1 179 ASN n 1 180 THR n 1 181 THR n 1 182 PRO n 1 183 ALA n 1 184 ALA n 1 185 ALA n 1 186 MET n 1 187 VAL n 1 188 SER n 1 189 VAL n 1 190 PHE n 1 191 THR n 1 192 GLY n 1 193 SER n 1 194 ASP n 1 195 ALA n 1 196 LYS n 1 197 GLU n 1 198 VAL n 1 199 VAL n 1 200 GLY n 1 201 ILE n 1 202 GLY n 1 203 ALA n 1 204 ASN n 1 205 LEU n 1 206 PRO n 1 207 PRO n 1 208 SER n 1 209 ARG n 1 210 ILE n 1 211 ASP n 1 212 ASN n 1 213 LYS n 1 214 VAL n 1 215 ASP n 1 216 VAL n 1 217 VAL n 1 218 ARG n 1 219 ARG n 1 220 ALA n 1 221 ILE n 1 222 ALA n 1 223 ILE n 1 224 ASN n 1 225 GLN n 1 226 PRO n 1 227 ASN n 1 228 PRO n 1 229 ARG n 1 230 ASP n 1 231 GLY n 1 232 ILE n 1 233 ASP n 1 234 VAL n 1 235 LEU n 1 236 SER n 1 237 LYS n 1 238 VAL n 1 239 GLY n 1 240 GLY n 1 241 PHE n 1 242 ASP n 1 243 LEU n 1 244 VAL n 1 245 GLY n 1 246 MET n 1 247 THR n 1 248 GLY n 1 249 VAL n 1 250 MET n 1 251 LEU n 1 252 GLY n 1 253 ALA n 1 254 ALA n 1 255 ARG n 1 256 CYS n 1 257 GLY n 1 258 LEU n 1 259 PRO n 1 260 VAL n 1 261 LEU n 1 262 LEU n 1 263 ASP n 1 264 GLY n 1 265 PHE n 1 266 LEU n 1 267 SER n 1 268 TYR n 1 269 SER n 1 270 ALA n 1 271 ALA n 1 272 LEU n 1 273 ALA n 1 274 ALA n 1 275 CYS n 1 276 GLN n 1 277 ILE n 1 278 ALA n 1 279 PRO n 1 280 ALA n 1 281 VAL n 1 282 ARG n 1 283 PRO n 1 284 TYR n 1 285 LEU n 1 286 ILE n 1 287 PRO n 1 288 SER n 1 289 HIS n 1 290 PHE n 1 291 SER n 1 292 ALA n 1 293 GLU n 1 294 LYS n 1 295 GLY n 1 296 ALA n 1 297 ARG n 1 298 ILE n 1 299 ALA n 1 300 LEU n 1 301 ALA n 1 302 HIS n 1 303 LEU n 1 304 SER n 1 305 MET n 1 306 GLU n 1 307 PRO n 1 308 TYR n 1 309 LEU n 1 310 HIS n 1 311 MET n 1 312 ALA n 1 313 MET n 1 314 ARG n 1 315 LEU n 1 316 GLY n 1 317 ALA n 1 318 GLY n 1 319 SER n 1 320 GLY n 1 321 ALA n 1 322 ALA n 1 323 LEU n 1 324 ALA n 1 325 MET n 1 326 PRO n 1 327 ILE n 1 328 VAL n 1 329 GLU n 1 330 ALA n 1 331 ALA n 1 332 CYS n 1 333 ALA n 1 334 MET n 1 335 PHE n 1 336 HIS n 1 337 ASN n 1 338 MET n 1 339 GLY n 1 340 GLU n 1 341 LEU n 1 342 ALA n 1 343 ALA n 1 344 SER n 1 345 ASN n 1 346 ILE n 1 347 VAL n 1 348 LEU n 1 349 PRO n 1 350 GLU n 1 351 GLY n 1 352 ASN n 1 353 ALA n 1 354 ASN n 1 355 ALA n 1 356 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'cobT, STM2016' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain LT2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella enterica subsp. enterica serovar Typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 99287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JE2017 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCOBT19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code COBT_SALTY _struct_ref.pdbx_db_accession Q05603 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQTLHALLRDIPAPDAEAMARAQQHIDGLLKPPGSLGRLETLAVQLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVS PKIVTAIQAANMTRGTTGVCVLAAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRLQAEALLLEVSRYTC DLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVRRAIAINQPNPRDGIDVLSKVGG FDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQIAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGEGSG AALAMPIVEAACAMFHNMGELAASNIVLPEGNANAT ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4KQI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 356 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q05603 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 356 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 356 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4KQI _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 317 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q05603 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 317 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 317 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NIO non-polymer . 'NICOTINIC ACID' ? 'C6 H5 N O2' 123.109 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RBZ non-polymer . "ALPHA-RIBAZOLE-5'-PHOSPHATE" ? 'C14 H19 N2 O7 P' 358.284 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4KQI _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '20% PEG 1500, 0.1 M MES, 0.05 M lithium sulfate, 2.5% ethylene glycol, pH 6.0, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2012-08-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.entry_id 4KQI _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.4 _reflns.d_resolution_low 50 _reflns.number_all 59605 _reflns.number_obs 59605 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 78 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.4 _reflns_shell.d_res_low 1.42 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs .17 _reflns_shell.meanI_over_sigI_obs 9.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4KQI _refine.ls_d_res_high 1.4000 _refine.ls_d_res_low 35.8500 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_number_reflns_obs 59422 _refine.ls_number_reflns_all 59422 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all 0.1743 _refine.ls_R_factor_obs 0.1743 _refine.ls_R_factor_R_work 0.1732 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1946 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 2999 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.3136 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.5700 _refine.aniso_B[2][2] -0.9300 _refine.aniso_B[3][3] 0.3600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9560 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0600 _refine.pdbx_overall_ESU_R_Free 0.0610 _refine.overall_SU_ML 0.0340 _refine.overall_SU_B 0.8310 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 58.650 _refine.B_iso_min 4.480 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2428 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 231 _refine_hist.number_atoms_total 2696 _refine_hist.d_res_high 1.4000 _refine_hist.d_res_low 35.8500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2537 0.019 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 2523 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3464 2.839 1.999 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 5793 1.142 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 351 5.653 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 82 31.670 23.780 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 397 14.017 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 16 21.350 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 414 0.165 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2899 0.014 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 519 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.4010 _refine_ls_shell.d_res_low 1.4370 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.6300 _refine_ls_shell.number_reflns_R_work 4130 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2010 _refine_ls_shell.R_factor_R_free 0.2070 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 200 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 4330 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4KQI _struct.title 'Crystal structure of CobT E317A complexed with its reaction products' _struct.pdbx_descriptor 'Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (E.C.2.4.2.21)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KQI _struct_keywords.text transferase _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details 'the biological unit is a dimer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? ASP A 10 ? THR A 3 ASP A 10 1 ? 8 HELX_P HELX_P2 2 ASP A 15 ? GLY A 28 ? ASP A 15 GLY A 28 1 ? 14 HELX_P HELX_P3 3 LEU A 36 ? GLY A 48 ? LEU A 36 GLY A 48 1 ? 13 HELX_P HELX_P4 4 MET A 49 ? ASN A 53 ? MET A 49 ASN A 53 5 ? 5 HELX_P HELX_P5 5 HIS A 70 ? GLY A 76 ? HIS A 70 GLY A 76 5 ? 7 HELX_P HELX_P6 6 ILE A 83 ? ARG A 94 ? ILE A 83 ARG A 94 1 ? 12 HELX_P HELX_P7 7 THR A 97 ? GLY A 107 ? THR A 97 GLY A 107 1 ? 11 HELX_P HELX_P8 8 SER A 144 ? ARG A 165 ? SER A 144 ARG A 165 1 ? 22 HELX_P HELX_P9 9 ASN A 179 ? GLY A 192 ? ASN A 179 GLY A 192 1 ? 14 HELX_P HELX_P10 10 ASP A 194 ? VAL A 199 ? ASP A 194 VAL A 199 1 ? 6 HELX_P HELX_P11 11 PRO A 206 ? SER A 208 ? PRO A 206 SER A 208 5 ? 3 HELX_P HELX_P12 12 ARG A 209 ? GLN A 225 ? ARG A 209 GLN A 225 1 ? 17 HELX_P HELX_P13 13 ASP A 230 ? GLY A 239 ? ASP A 230 GLY A 239 1 ? 10 HELX_P HELX_P14 14 GLY A 240 ? CYS A 256 ? GLY A 240 CYS A 256 1 ? 17 HELX_P HELX_P15 15 GLY A 264 ? ALA A 278 ? GLY A 264 ALA A 278 1 ? 15 HELX_P HELX_P16 16 PRO A 279 ? PRO A 283 ? PRO A 279 PRO A 283 5 ? 5 HELX_P HELX_P17 17 GLY A 295 ? LEU A 303 ? GLY A 295 LEU A 303 1 ? 9 HELX_P HELX_P18 18 GLY A 318 ? MET A 338 ? GLY A 318 MET A 338 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 160 SG B ? ? 1_555 A CYS 256 SG ? ? A CYS 160 A CYS 256 1_555 ? ? ? ? ? ? ? 1.981 ? disulf2 disulf ? ? A CYS 160 SG A ? ? 1_555 A CYS 256 SG ? ? A CYS 160 A CYS 256 1_555 ? ? ? ? ? ? ? 2.063 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 126 ? ASN A 127 ? VAL A 126 ASN A 127 A 2 LYS A 109 ? GLY A 116 ? LYS A 109 GLY A 116 A 3 GLU A 60 ? ALA A 68 ? GLU A 60 ALA A 68 A 4 VAL A 167 ? LEU A 175 ? VAL A 167 LEU A 175 A 5 VAL A 260 ? LEU A 261 ? VAL A 260 LEU A 261 A 6 LEU A 285 ? ILE A 286 ? LEU A 285 ILE A 286 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 126 ? O VAL A 126 N ASP A 114 ? N ASP A 114 A 2 3 O ILE A 113 ? O ILE A 113 N CYS A 67 ? N CYS A 67 A 3 4 N LEU A 64 ? N LEU A 64 O GLY A 171 ? O GLY A 171 A 4 5 N PHE A 170 ? N PHE A 170 O LEU A 261 ? O LEU A 261 A 5 6 N VAL A 260 ? N VAL A 260 O ILE A 286 ? O ILE A 286 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 21 'BINDING SITE FOR RESIDUE RBZ A 401' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 402' AC3 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE NIO A 403' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 PRO A 32 ? PRO A 32 . ? 2_565 ? 2 AC1 21 ALA A 78 ? ALA A 78 . ? 1_555 ? 3 AC1 21 SER A 80 ? SER A 80 . ? 1_555 ? 4 AC1 21 GLU A 174 ? GLU A 174 . ? 1_555 ? 5 AC1 21 LEU A 175 ? LEU A 175 . ? 1_555 ? 6 AC1 21 GLY A 176 ? GLY A 176 . ? 1_555 ? 7 AC1 21 MET A 177 ? MET A 177 . ? 1_555 ? 8 AC1 21 ALA A 178 ? ALA A 178 . ? 1_555 ? 9 AC1 21 ASN A 179 ? ASN A 179 . ? 1_555 ? 10 AC1 21 THR A 180 ? THR A 180 . ? 1_555 ? 11 AC1 21 GLY A 202 ? GLY A 202 . ? 1_555 ? 12 AC1 21 ALA A 203 ? ALA A 203 . ? 1_555 ? 13 AC1 21 LEU A 315 ? LEU A 315 . ? 1_555 ? 14 AC1 21 NIO D . ? NIO A 403 . ? 1_555 ? 15 AC1 21 HOH E . ? HOH A 513 . ? 1_555 ? 16 AC1 21 HOH E . ? HOH A 534 . ? 1_555 ? 17 AC1 21 HOH E . ? HOH A 544 . ? 1_555 ? 18 AC1 21 HOH E . ? HOH A 583 . ? 1_555 ? 19 AC1 21 HOH E . ? HOH A 647 . ? 1_555 ? 20 AC1 21 HOH E . ? HOH A 649 . ? 1_555 ? 21 AC1 21 HOH E . ? HOH A 680 . ? 1_555 ? 22 AC2 5 CYS A 100 ? CYS A 100 . ? 1_555 ? 23 AC2 5 ALA A 108 ? ALA A 108 . ? 1_555 ? 24 AC2 5 LYS A 109 ? LYS A 109 . ? 1_555 ? 25 AC2 5 VAL A 110 ? VAL A 110 . ? 1_555 ? 26 AC2 5 HOH E . ? HOH A 713 . ? 1_555 ? 27 AC3 13 GLY A 202 ? GLY A 202 . ? 1_555 ? 28 AC3 13 GLY A 264 ? GLY A 264 . ? 1_555 ? 29 AC3 13 PHE A 265 ? PHE A 265 . ? 1_555 ? 30 AC3 13 LEU A 266 ? LEU A 266 . ? 1_555 ? 31 AC3 13 SER A 291 ? SER A 291 . ? 1_555 ? 32 AC3 13 GLU A 293 ? GLU A 293 . ? 1_555 ? 33 AC3 13 ARG A 314 ? ARG A 314 . ? 1_555 ? 34 AC3 13 GLY A 316 ? GLY A 316 . ? 1_555 ? 35 AC3 13 RBZ B . ? RBZ A 401 . ? 1_555 ? 36 AC3 13 HOH E . ? HOH A 633 . ? 1_555 ? 37 AC3 13 HOH E . ? HOH A 635 . ? 1_555 ? 38 AC3 13 HOH E . ? HOH A 649 . ? 1_555 ? 39 AC3 13 HOH E . ? HOH A 680 . ? 1_555 ? # _atom_sites.entry_id 4KQI _atom_sites.fract_transf_matrix[1][1] 0.021389 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014030 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011180 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _database_PDB_caveat.text 'SEVERAL COVALENT BOND ANGLES DEVIATION' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLN 2 2 ? ? ? A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 MET 66 66 66 MET MET A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 TRP 73 73 73 TRP TRP A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 CYS 100 100 100 CYS CYS A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 MET 128 128 128 MET MET A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 CYS 134 134 134 CYS CYS A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 MET 143 143 143 MET MET A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 THR 159 159 159 THR THR A . n A 1 160 CYS 160 160 160 CYS CYS A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 GLN 164 164 164 GLN GLN A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 PHE 170 170 170 PHE PHE A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 MET 177 177 177 MET MET A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 THR 180 180 180 THR THR A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 MET 186 186 186 MET MET A . n A 1 187 VAL 187 187 187 VAL VAL A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 PHE 190 190 190 PHE PHE A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 ASN 204 204 204 ASN ASN A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 PRO 206 206 206 PRO PRO A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 ARG 209 209 209 ARG ARG A . n A 1 210 ILE 210 210 210 ILE ILE A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 ASN 212 212 212 ASN ASN A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 VAL 214 214 214 VAL VAL A . n A 1 215 ASP 215 215 215 ASP ASP A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 ARG 219 219 219 ARG ARG A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 ILE 221 221 221 ILE ILE A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 ILE 223 223 223 ILE ILE A . n A 1 224 ASN 224 224 224 ASN ASN A . n A 1 225 GLN 225 225 225 GLN GLN A . n A 1 226 PRO 226 226 226 PRO PRO A . n A 1 227 ASN 227 227 227 ASN ASN A . n A 1 228 PRO 228 228 228 PRO PRO A . n A 1 229 ARG 229 229 229 ARG ARG A . n A 1 230 ASP 230 230 230 ASP ASP A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 ASP 233 233 233 ASP ASP A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 LYS 237 237 237 LYS LYS A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 GLY 239 239 239 GLY GLY A . n A 1 240 GLY 240 240 240 GLY GLY A . n A 1 241 PHE 241 241 241 PHE PHE A . n A 1 242 ASP 242 242 242 ASP ASP A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 VAL 244 244 244 VAL VAL A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 MET 246 246 246 MET MET A . n A 1 247 THR 247 247 247 THR THR A . n A 1 248 GLY 248 248 248 GLY GLY A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 MET 250 250 250 MET MET A . n A 1 251 LEU 251 251 251 LEU LEU A . n A 1 252 GLY 252 252 252 GLY GLY A . n A 1 253 ALA 253 253 253 ALA ALA A . n A 1 254 ALA 254 254 254 ALA ALA A . n A 1 255 ARG 255 255 255 ARG ARG A . n A 1 256 CYS 256 256 256 CYS CYS A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 PRO 259 259 259 PRO PRO A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 ASP 263 263 263 ASP ASP A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 PHE 265 265 265 PHE PHE A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 TYR 268 268 268 TYR TYR A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 ALA 270 270 270 ALA ALA A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 ALA 273 273 273 ALA ALA A . n A 1 274 ALA 274 274 274 ALA ALA A . n A 1 275 CYS 275 275 275 CYS CYS A . n A 1 276 GLN 276 276 276 GLN GLN A . n A 1 277 ILE 277 277 277 ILE ILE A . n A 1 278 ALA 278 278 278 ALA ALA A . n A 1 279 PRO 279 279 279 PRO PRO A . n A 1 280 ALA 280 280 280 ALA ALA A . n A 1 281 VAL 281 281 281 VAL VAL A . n A 1 282 ARG 282 282 282 ARG ARG A . n A 1 283 PRO 283 283 283 PRO PRO A . n A 1 284 TYR 284 284 284 TYR TYR A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 ILE 286 286 286 ILE ILE A . n A 1 287 PRO 287 287 287 PRO PRO A . n A 1 288 SER 288 288 288 SER SER A . n A 1 289 HIS 289 289 289 HIS HIS A . n A 1 290 PHE 290 290 290 PHE PHE A . n A 1 291 SER 291 291 291 SER SER A . n A 1 292 ALA 292 292 292 ALA ALA A . n A 1 293 GLU 293 293 293 GLU GLU A . n A 1 294 LYS 294 294 294 LYS LYS A . n A 1 295 GLY 295 295 295 GLY GLY A . n A 1 296 ALA 296 296 296 ALA ALA A . n A 1 297 ARG 297 297 297 ARG ARG A . n A 1 298 ILE 298 298 298 ILE ILE A . n A 1 299 ALA 299 299 299 ALA ALA A . n A 1 300 LEU 300 300 300 LEU LEU A . n A 1 301 ALA 301 301 301 ALA ALA A . n A 1 302 HIS 302 302 302 HIS HIS A . n A 1 303 LEU 303 303 303 LEU LEU A . n A 1 304 SER 304 304 304 SER SER A . n A 1 305 MET 305 305 305 MET MET A . n A 1 306 GLU 306 306 306 GLU GLU A . n A 1 307 PRO 307 307 307 PRO PRO A . n A 1 308 TYR 308 308 308 TYR TYR A . n A 1 309 LEU 309 309 309 LEU LEU A . n A 1 310 HIS 310 310 310 HIS HIS A . n A 1 311 MET 311 311 311 MET MET A . n A 1 312 ALA 312 312 312 ALA ALA A . n A 1 313 MET 313 313 313 MET MET A . n A 1 314 ARG 314 314 314 ARG ARG A . n A 1 315 LEU 315 315 315 LEU LEU A . n A 1 316 GLY 316 316 316 GLY GLY A . n A 1 317 ALA 317 317 317 ALA ALA A . n A 1 318 GLY 318 318 318 GLY GLY A . n A 1 319 SER 319 319 319 SER SER A . n A 1 320 GLY 320 320 320 GLY GLY A . n A 1 321 ALA 321 321 321 ALA ALA A . n A 1 322 ALA 322 322 322 ALA ALA A . n A 1 323 LEU 323 323 323 LEU LEU A . n A 1 324 ALA 324 324 324 ALA ALA A . n A 1 325 MET 325 325 325 MET MET A . n A 1 326 PRO 326 326 326 PRO PRO A . n A 1 327 ILE 327 327 327 ILE ILE A . n A 1 328 VAL 328 328 328 VAL VAL A . n A 1 329 GLU 329 329 329 GLU GLU A . n A 1 330 ALA 330 330 330 ALA ALA A . n A 1 331 ALA 331 331 331 ALA ALA A . n A 1 332 CYS 332 332 332 CYS CYS A . n A 1 333 ALA 333 333 333 ALA ALA A . n A 1 334 MET 334 334 334 MET MET A . n A 1 335 PHE 335 335 335 PHE PHE A . n A 1 336 HIS 336 336 336 HIS HIS A . n A 1 337 ASN 337 337 337 ASN ASN A . n A 1 338 MET 338 338 338 MET MET A . n A 1 339 GLY 339 339 339 GLY GLY A . n A 1 340 GLU 340 340 340 GLU GLU A . n A 1 341 LEU 341 341 341 LEU LEU A . n A 1 342 ALA 342 342 342 ALA ALA A . n A 1 343 ALA 343 343 ? ? ? A . n A 1 344 SER 344 344 ? ? ? A . n A 1 345 ASN 345 345 ? ? ? A . n A 1 346 ILE 346 346 ? ? ? A . n A 1 347 VAL 347 347 ? ? ? A . n A 1 348 LEU 348 348 ? ? ? A . n A 1 349 PRO 349 349 ? ? ? A . n A 1 350 GLU 350 350 ? ? ? A . n A 1 351 GLY 351 351 ? ? ? A . n A 1 352 ASN 352 352 ? ? ? A . n A 1 353 ALA 353 353 ? ? ? A . n A 1 354 ASN 354 354 ? ? ? A . n A 1 355 ALA 355 355 ? ? ? A . n A 1 356 THR 356 356 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6070 ? 1 MORE -14 ? 1 'SSA (A^2)' 21330 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 71.2780000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-03-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-3000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 SADABS . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 82 ? ? O A HOH 700 ? ? 1.90 2 1 CA A GLY 316 ? ? O A HOH 649 ? ? 1.93 3 1 C1 A EDO 402 ? ? O A HOH 713 ? ? 1.94 4 1 OD1 A ASP 27 ? ? O A HOH 577 ? ? 1.96 5 1 SD A MET 313 ? B O A HOH 636 ? ? 2.03 6 1 CG A MET 313 ? B O A HOH 636 ? ? 2.04 7 1 CG A LEU 36 ? ? O A HOH 682 ? ? 2.11 8 1 CD2 A LEU 36 ? ? O A HOH 682 ? ? 2.11 9 1 OE2 A GLU 174 ? ? O A HOH 634 ? ? 2.13 10 1 O A HOH 696 ? ? O A HOH 697 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 658 ? ? 1_555 O A HOH 658 ? ? 2_565 1.05 2 1 OG A SER 35 ? ? 1_555 O A HOH 678 ? ? 2_565 1.95 3 1 OE2 A GLU 154 ? ? 1_555 O A HOH 665 ? ? 3_845 2.08 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ALA _pdbx_validate_rmsd_bond.auth_seq_id_1 317 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CA _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ALA _pdbx_validate_rmsd_bond.auth_seq_id_2 317 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.332 _pdbx_validate_rmsd_bond.bond_target_value 1.459 _pdbx_validate_rmsd_bond.bond_deviation -0.127 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.020 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 15 ? ? CG A ASP 15 ? ? OD1 A ASP 15 ? ? 112.60 118.30 -5.70 0.90 N 2 1 NE A ARG 38 ? ? CZ A ARG 38 ? ? NH1 A ARG 38 ? ? 113.20 120.30 -7.10 0.50 N 3 1 CB A MET 66 ? ? CG A MET 66 ? ? SD A MET 66 ? ? 90.59 112.40 -21.81 3.00 N 4 1 CG A MET 66 ? ? SD A MET 66 ? ? CE A MET 66 ? ? 67.10 100.20 -33.10 1.60 N 5 1 CD A LYS 109 ? ? CE A LYS 109 ? ? NZ A LYS 109 ? ? 137.07 111.70 25.37 2.30 N 6 1 NE A ARG 129 ? ? CZ A ARG 129 ? ? NH1 A ARG 129 ? ? 125.84 120.30 5.54 0.50 N 7 1 NE A ARG 129 ? ? CZ A ARG 129 ? ? NH2 A ARG 129 ? ? 111.33 120.30 -8.97 0.50 N 8 1 NE A ARG 132 ? ? CZ A ARG 132 ? ? NH1 A ARG 132 ? ? 126.39 120.30 6.09 0.50 N 9 1 NE A ARG 132 ? ? CZ A ARG 132 ? ? NH2 A ARG 132 ? ? 110.87 120.30 -9.43 0.50 N 10 1 CB A TYR 158 ? ? CG A TYR 158 ? ? CD2 A TYR 158 ? ? 124.93 121.00 3.93 0.60 N 11 1 CB A CYS 160 ? B CA A CYS 160 ? B C A CYS 160 ? ? 125.17 111.50 13.67 1.20 N 12 1 CB A ASP 242 ? ? CG A ASP 242 ? ? OD1 A ASP 242 ? ? 111.86 118.30 -6.44 0.90 N 13 1 NE A ARG 255 ? ? CZ A ARG 255 ? ? NH1 A ARG 255 ? ? 125.48 120.30 5.18 0.50 N 14 1 NE A ARG 255 ? ? CZ A ARG 255 ? ? NH2 A ARG 255 ? ? 116.00 120.30 -4.30 0.50 N 15 1 CB A TYR 268 ? ? CG A TYR 268 ? ? CD2 A TYR 268 ? ? 124.82 121.00 3.82 0.60 N 16 1 CG A MET 305 ? ? SD A MET 305 ? ? CE A MET 305 ? ? 87.90 100.20 -12.30 1.60 N 17 1 OE1 A GLU 329 ? ? CD A GLU 329 ? ? OE2 A GLU 329 ? ? 130.76 123.30 7.46 1.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 30 ? ? -66.69 67.33 2 1 ASP A 263 ? ? -113.34 -111.37 3 1 SER A 288 ? ? -107.35 -80.66 4 1 ARG A 314 ? ? -157.46 38.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 165 ? CG ? A ARG 165 CG 2 1 Y 1 A ARG 165 ? CD ? A ARG 165 CD 3 1 Y 1 A ARG 165 ? NE ? A ARG 165 NE 4 1 Y 1 A ARG 165 ? CZ ? A ARG 165 CZ 5 1 Y 1 A ARG 165 ? NH1 ? A ARG 165 NH1 6 1 Y 1 A ARG 165 ? NH2 ? A ARG 165 NH2 7 1 Y 1 A GLU 197 ? CG ? A GLU 197 CG 8 1 Y 1 A GLU 197 ? CD ? A GLU 197 CD 9 1 Y 1 A GLU 197 ? OE1 ? A GLU 197 OE1 10 1 Y 1 A GLU 197 ? OE2 ? A GLU 197 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLN 2 ? A GLN 2 3 1 Y 1 A ALA 343 ? A ALA 343 4 1 Y 1 A SER 344 ? A SER 344 5 1 Y 1 A ASN 345 ? A ASN 345 6 1 Y 1 A ILE 346 ? A ILE 346 7 1 Y 1 A VAL 347 ? A VAL 347 8 1 Y 1 A LEU 348 ? A LEU 348 9 1 Y 1 A PRO 349 ? A PRO 349 10 1 Y 1 A GLU 350 ? A GLU 350 11 1 Y 1 A GLY 351 ? A GLY 351 12 1 Y 1 A ASN 352 ? A ASN 352 13 1 Y 1 A ALA 353 ? A ALA 353 14 1 Y 1 A ASN 354 ? A ASN 354 15 1 Y 1 A ALA 355 ? A ALA 355 16 1 Y 1 A THR 356 ? A THR 356 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ALPHA-RIBAZOLE-5'-PHOSPHATE" RBZ 3 1,2-ETHANEDIOL EDO 4 'NICOTINIC ACID' NIO 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBZ 1 401 990 RBZ RBZ A . C 3 EDO 1 402 801 EDO EDO A . D 4 NIO 1 403 901 NIO NIO A . E 5 HOH 1 501 1 HOH HOH A . E 5 HOH 2 502 2 HOH HOH A . E 5 HOH 3 503 3 HOH HOH A . E 5 HOH 4 504 4 HOH HOH A . E 5 HOH 5 505 5 HOH HOH A . E 5 HOH 6 506 6 HOH HOH A . E 5 HOH 7 507 7 HOH HOH A . E 5 HOH 8 508 8 HOH HOH A . E 5 HOH 9 509 9 HOH HOH A . E 5 HOH 10 510 10 HOH HOH A . E 5 HOH 11 511 11 HOH HOH A . E 5 HOH 12 512 12 HOH HOH A . E 5 HOH 13 513 13 HOH HOH A . E 5 HOH 14 514 14 HOH HOH A . E 5 HOH 15 515 15 HOH HOH A . E 5 HOH 16 516 16 HOH HOH A . E 5 HOH 17 517 17 HOH HOH A . E 5 HOH 18 518 18 HOH HOH A . E 5 HOH 19 519 19 HOH HOH A . E 5 HOH 20 520 20 HOH HOH A . E 5 HOH 21 521 21 HOH HOH A . E 5 HOH 22 522 22 HOH HOH A . E 5 HOH 23 523 23 HOH HOH A . E 5 HOH 24 524 24 HOH HOH A . E 5 HOH 25 525 25 HOH HOH A . E 5 HOH 26 526 26 HOH HOH A . E 5 HOH 27 527 27 HOH HOH A . E 5 HOH 28 528 28 HOH HOH A . E 5 HOH 29 529 29 HOH HOH A . E 5 HOH 30 530 30 HOH HOH A . E 5 HOH 31 531 31 HOH HOH A . E 5 HOH 32 532 32 HOH HOH A . E 5 HOH 33 533 33 HOH HOH A . E 5 HOH 34 534 34 HOH HOH A . E 5 HOH 35 535 35 HOH HOH A . E 5 HOH 36 536 36 HOH HOH A . E 5 HOH 37 537 37 HOH HOH A . E 5 HOH 38 538 38 HOH HOH A . E 5 HOH 39 539 39 HOH HOH A . E 5 HOH 40 540 41 HOH HOH A . E 5 HOH 41 541 42 HOH HOH A . E 5 HOH 42 542 43 HOH HOH A . E 5 HOH 43 543 44 HOH HOH A . E 5 HOH 44 544 45 HOH HOH A . E 5 HOH 45 545 46 HOH HOH A . E 5 HOH 46 546 47 HOH HOH A . E 5 HOH 47 547 48 HOH HOH A . E 5 HOH 48 548 49 HOH HOH A . E 5 HOH 49 549 50 HOH HOH A . E 5 HOH 50 550 51 HOH HOH A . E 5 HOH 51 551 52 HOH HOH A . E 5 HOH 52 552 53 HOH HOH A . E 5 HOH 53 553 54 HOH HOH A . E 5 HOH 54 554 55 HOH HOH A . E 5 HOH 55 555 56 HOH HOH A . E 5 HOH 56 556 57 HOH HOH A . E 5 HOH 57 557 58 HOH HOH A . E 5 HOH 58 558 59 HOH HOH A . E 5 HOH 59 559 61 HOH HOH A . E 5 HOH 60 560 62 HOH HOH A . E 5 HOH 61 561 63 HOH HOH A . E 5 HOH 62 562 64 HOH HOH A . E 5 HOH 63 563 65 HOH HOH A . E 5 HOH 64 564 66 HOH HOH A . E 5 HOH 65 565 68 HOH HOH A . E 5 HOH 66 566 69 HOH HOH A . E 5 HOH 67 567 70 HOH HOH A . E 5 HOH 68 568 71 HOH HOH A . E 5 HOH 69 569 72 HOH HOH A . E 5 HOH 70 570 73 HOH HOH A . E 5 HOH 71 571 74 HOH HOH A . E 5 HOH 72 572 75 HOH HOH A . E 5 HOH 73 573 76 HOH HOH A . E 5 HOH 74 574 78 HOH HOH A . E 5 HOH 75 575 79 HOH HOH A . E 5 HOH 76 576 80 HOH HOH A . E 5 HOH 77 577 82 HOH HOH A . E 5 HOH 78 578 83 HOH HOH A . E 5 HOH 79 579 84 HOH HOH A . E 5 HOH 80 580 85 HOH HOH A . E 5 HOH 81 581 87 HOH HOH A . E 5 HOH 82 582 89 HOH HOH A . E 5 HOH 83 583 90 HOH HOH A . E 5 HOH 84 584 91 HOH HOH A . E 5 HOH 85 585 92 HOH HOH A . E 5 HOH 86 586 93 HOH HOH A . E 5 HOH 87 587 94 HOH HOH A . E 5 HOH 88 588 95 HOH HOH A . E 5 HOH 89 589 96 HOH HOH A . E 5 HOH 90 590 97 HOH HOH A . E 5 HOH 91 591 98 HOH HOH A . E 5 HOH 92 592 99 HOH HOH A . E 5 HOH 93 593 100 HOH HOH A . E 5 HOH 94 594 102 HOH HOH A . E 5 HOH 95 595 103 HOH HOH A . E 5 HOH 96 596 104 HOH HOH A . E 5 HOH 97 597 105 HOH HOH A . E 5 HOH 98 598 108 HOH HOH A . E 5 HOH 99 599 109 HOH HOH A . E 5 HOH 100 600 115 HOH HOH A . E 5 HOH 101 601 116 HOH HOH A . E 5 HOH 102 602 117 HOH HOH A . E 5 HOH 103 603 118 HOH HOH A . E 5 HOH 104 604 119 HOH HOH A . E 5 HOH 105 605 120 HOH HOH A . E 5 HOH 106 606 122 HOH HOH A . E 5 HOH 107 607 123 HOH HOH A . E 5 HOH 108 608 124 HOH HOH A . E 5 HOH 109 609 125 HOH HOH A . E 5 HOH 110 610 126 HOH HOH A . E 5 HOH 111 611 127 HOH HOH A . E 5 HOH 112 612 128 HOH HOH A . E 5 HOH 113 613 129 HOH HOH A . E 5 HOH 114 614 130 HOH HOH A . E 5 HOH 115 615 132 HOH HOH A . E 5 HOH 116 616 133 HOH HOH A . E 5 HOH 117 617 134 HOH HOH A . E 5 HOH 118 618 135 HOH HOH A . E 5 HOH 119 619 136 HOH HOH A . E 5 HOH 120 620 137 HOH HOH A . E 5 HOH 121 621 138 HOH HOH A . E 5 HOH 122 622 140 HOH HOH A . E 5 HOH 123 623 143 HOH HOH A . E 5 HOH 124 624 144 HOH HOH A . E 5 HOH 125 625 145 HOH HOH A . E 5 HOH 126 626 147 HOH HOH A . E 5 HOH 127 627 148 HOH HOH A . E 5 HOH 128 628 149 HOH HOH A . E 5 HOH 129 629 150 HOH HOH A . E 5 HOH 130 630 151 HOH HOH A . E 5 HOH 131 631 152 HOH HOH A . E 5 HOH 132 632 153 HOH HOH A . E 5 HOH 133 633 154 HOH HOH A . E 5 HOH 134 634 155 HOH HOH A . E 5 HOH 135 635 156 HOH HOH A . E 5 HOH 136 636 157 HOH HOH A . E 5 HOH 137 637 158 HOH HOH A . E 5 HOH 138 638 159 HOH HOH A . E 5 HOH 139 639 160 HOH HOH A . E 5 HOH 140 640 161 HOH HOH A . E 5 HOH 141 641 162 HOH HOH A . E 5 HOH 142 642 163 HOH HOH A . E 5 HOH 143 643 164 HOH HOH A . E 5 HOH 144 644 165 HOH HOH A . E 5 HOH 145 645 166 HOH HOH A . E 5 HOH 146 646 167 HOH HOH A . E 5 HOH 147 647 168 HOH HOH A . E 5 HOH 148 648 169 HOH HOH A . E 5 HOH 149 649 170 HOH HOH A . E 5 HOH 150 650 171 HOH HOH A . E 5 HOH 151 651 172 HOH HOH A . E 5 HOH 152 652 173 HOH HOH A . E 5 HOH 153 653 174 HOH HOH A . E 5 HOH 154 654 175 HOH HOH A . E 5 HOH 155 655 176 HOH HOH A . E 5 HOH 156 656 177 HOH HOH A . E 5 HOH 157 657 178 HOH HOH A . E 5 HOH 158 658 179 HOH HOH A . E 5 HOH 159 659 180 HOH HOH A . E 5 HOH 160 660 181 HOH HOH A . E 5 HOH 161 661 182 HOH HOH A . E 5 HOH 162 662 183 HOH HOH A . E 5 HOH 163 663 184 HOH HOH A . E 5 HOH 164 664 185 HOH HOH A . E 5 HOH 165 665 186 HOH HOH A . E 5 HOH 166 666 187 HOH HOH A . E 5 HOH 167 667 188 HOH HOH A . E 5 HOH 168 668 189 HOH HOH A . E 5 HOH 169 669 190 HOH HOH A . E 5 HOH 170 670 191 HOH HOH A . E 5 HOH 171 671 192 HOH HOH A . E 5 HOH 172 672 193 HOH HOH A . E 5 HOH 173 673 194 HOH HOH A . E 5 HOH 174 674 195 HOH HOH A . E 5 HOH 175 675 196 HOH HOH A . E 5 HOH 176 676 197 HOH HOH A . E 5 HOH 177 677 198 HOH HOH A . E 5 HOH 178 678 199 HOH HOH A . E 5 HOH 179 679 200 HOH HOH A . E 5 HOH 180 680 201 HOH HOH A . E 5 HOH 181 681 202 HOH HOH A . E 5 HOH 182 682 203 HOH HOH A . E 5 HOH 183 683 204 HOH HOH A . E 5 HOH 184 684 205 HOH HOH A . E 5 HOH 185 685 206 HOH HOH A . E 5 HOH 186 686 207 HOH HOH A . E 5 HOH 187 687 208 HOH HOH A . E 5 HOH 188 688 209 HOH HOH A . E 5 HOH 189 689 210 HOH HOH A . E 5 HOH 190 690 211 HOH HOH A . E 5 HOH 191 691 212 HOH HOH A . E 5 HOH 192 692 213 HOH HOH A . E 5 HOH 193 693 214 HOH HOH A . E 5 HOH 194 694 215 HOH HOH A . E 5 HOH 195 695 216 HOH HOH A . E 5 HOH 196 696 217 HOH HOH A . E 5 HOH 197 697 218 HOH HOH A . E 5 HOH 198 698 219 HOH HOH A . E 5 HOH 199 699 220 HOH HOH A . E 5 HOH 200 700 221 HOH HOH A . E 5 HOH 201 701 222 HOH HOH A . E 5 HOH 202 702 223 HOH HOH A . E 5 HOH 203 703 224 HOH HOH A . E 5 HOH 204 704 225 HOH HOH A . E 5 HOH 205 705 226 HOH HOH A . E 5 HOH 206 706 227 HOH HOH A . E 5 HOH 207 707 228 HOH HOH A . E 5 HOH 208 708 229 HOH HOH A . E 5 HOH 209 709 230 HOH HOH A . E 5 HOH 210 710 231 HOH HOH A . E 5 HOH 211 711 232 HOH HOH A . E 5 HOH 212 712 233 HOH HOH A . E 5 HOH 213 713 234 HOH HOH A . E 5 HOH 214 714 235 HOH HOH A . E 5 HOH 215 715 236 HOH HOH A . E 5 HOH 216 716 237 HOH HOH A . E 5 HOH 217 717 238 HOH HOH A . E 5 HOH 218 718 239 HOH HOH A . E 5 HOH 219 719 240 HOH HOH A . E 5 HOH 220 720 241 HOH HOH A . E 5 HOH 221 721 242 HOH HOH A . E 5 HOH 222 722 243 HOH HOH A . E 5 HOH 223 723 244 HOH HOH A . E 5 HOH 224 724 245 HOH HOH A . E 5 HOH 225 725 246 HOH HOH A . E 5 HOH 226 726 247 HOH HOH A . E 5 HOH 227 727 248 HOH HOH A . E 5 HOH 228 728 249 HOH HOH A . E 5 HOH 229 729 250 HOH HOH A . E 5 HOH 230 730 251 HOH HOH A . E 5 HOH 231 731 252 HOH HOH A . #