data_4KQT # _entry.id 4KQT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4KQT RCSB RCSB079678 WWPDB D_1000079678 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-423828 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4KQT _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category FoldIt _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of a putative outer membrane chaperone (OmpH-like) (CC_1914) from Caulobacter crescentus CB15 at 2.83 A resolution (PSI Community Target, Shapiro) ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 # _cell.entry_id 4KQT _cell.length_a 109.849 _cell.length_b 109.849 _cell.length_c 163.704 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4KQT _symmetry.Int_Tables_number 155 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative outer membrane chaperone (OmpH-like)' 21535.914 1 ? ? 'UNP residues 37-212' ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 2 ? ? ? ? 4 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQGTHGPALPGVCIFSSPRAVGSSLVGKAVDARLKTIIQQVNAELTGERTALDNEAKALD AKKTTIAQDALEQQAATLQAKANAWQRKGQLRQKEVEATEQKALSRVYQELNTPIQQVYQAQKCSVLLDREAV(MSE)LA NPA(MSE)DITDAVVAALDARIKTLTFDRERLDQQVPGAAALQPTNK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGTHGPALPGVCIFSSPRAVGSSLVGKAVDARLKTIIQQVNAELTGERTALDNEAKALDAKKT TIAQDALEQQAATLQAKANAWQRKGQLRQKEVEATEQKALSRVYQELNTPIQQVYQAQKCSVLLDREAVMLANPAMDITD AVVAALDARIKTLTFDRERLDQQVPGAAALQPTNK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-423828 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 THR n 1 21 HIS n 1 22 GLY n 1 23 PRO n 1 24 ALA n 1 25 LEU n 1 26 PRO n 1 27 GLY n 1 28 VAL n 1 29 CYS n 1 30 ILE n 1 31 PHE n 1 32 SER n 1 33 SER n 1 34 PRO n 1 35 ARG n 1 36 ALA n 1 37 VAL n 1 38 GLY n 1 39 SER n 1 40 SER n 1 41 LEU n 1 42 VAL n 1 43 GLY n 1 44 LYS n 1 45 ALA n 1 46 VAL n 1 47 ASP n 1 48 ALA n 1 49 ARG n 1 50 LEU n 1 51 LYS n 1 52 THR n 1 53 ILE n 1 54 ILE n 1 55 GLN n 1 56 GLN n 1 57 VAL n 1 58 ASN n 1 59 ALA n 1 60 GLU n 1 61 LEU n 1 62 THR n 1 63 GLY n 1 64 GLU n 1 65 ARG n 1 66 THR n 1 67 ALA n 1 68 LEU n 1 69 ASP n 1 70 ASN n 1 71 GLU n 1 72 ALA n 1 73 LYS n 1 74 ALA n 1 75 LEU n 1 76 ASP n 1 77 ALA n 1 78 LYS n 1 79 LYS n 1 80 THR n 1 81 THR n 1 82 ILE n 1 83 ALA n 1 84 GLN n 1 85 ASP n 1 86 ALA n 1 87 LEU n 1 88 GLU n 1 89 GLN n 1 90 GLN n 1 91 ALA n 1 92 ALA n 1 93 THR n 1 94 LEU n 1 95 GLN n 1 96 ALA n 1 97 LYS n 1 98 ALA n 1 99 ASN n 1 100 ALA n 1 101 TRP n 1 102 GLN n 1 103 ARG n 1 104 LYS n 1 105 GLY n 1 106 GLN n 1 107 LEU n 1 108 ARG n 1 109 GLN n 1 110 LYS n 1 111 GLU n 1 112 VAL n 1 113 GLU n 1 114 ALA n 1 115 THR n 1 116 GLU n 1 117 GLN n 1 118 LYS n 1 119 ALA n 1 120 LEU n 1 121 SER n 1 122 ARG n 1 123 VAL n 1 124 TYR n 1 125 GLN n 1 126 GLU n 1 127 LEU n 1 128 ASN n 1 129 THR n 1 130 PRO n 1 131 ILE n 1 132 GLN n 1 133 GLN n 1 134 VAL n 1 135 TYR n 1 136 GLN n 1 137 ALA n 1 138 GLN n 1 139 LYS n 1 140 CYS n 1 141 SER n 1 142 VAL n 1 143 LEU n 1 144 LEU n 1 145 ASP n 1 146 ARG n 1 147 GLU n 1 148 ALA n 1 149 VAL n 1 150 MSE n 1 151 LEU n 1 152 ALA n 1 153 ASN n 1 154 PRO n 1 155 ALA n 1 156 MSE n 1 157 ASP n 1 158 ILE n 1 159 THR n 1 160 ASP n 1 161 ALA n 1 162 VAL n 1 163 VAL n 1 164 ALA n 1 165 ALA n 1 166 LEU n 1 167 ASP n 1 168 ALA n 1 169 ARG n 1 170 ILE n 1 171 LYS n 1 172 THR n 1 173 LEU n 1 174 THR n 1 175 PHE n 1 176 ASP n 1 177 ARG n 1 178 GLU n 1 179 ARG n 1 180 LEU n 1 181 ASP n 1 182 GLN n 1 183 GLN n 1 184 VAL n 1 185 PRO n 1 186 GLY n 1 187 ALA n 1 188 ALA n 1 189 ALA n 1 190 LEU n 1 191 GLN n 1 192 PRO n 1 193 THR n 1 194 ASN n 1 195 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CC_1914 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 19089 / CB15' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caulobacter crescentus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 190650 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9A712_CAUCR _struct_ref.pdbx_db_accession Q9A712 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;THGPALPGVCIFSSPRAVGSSLVGKAVDARLKTIIQQVNAELTGERTALDNEAKALDAKKTTIAQDALEQQAATLQAKAN AWQRKGQLRQKEVEATEQKALSRVYQELNTPIQQVYQAQKCSVLLDREAVMLANPAMDITDAVVAALDARIKTLTFDRER LDQQVPGAAALQPTNK ; _struct_ref.pdbx_align_begin 37 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4KQT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 195 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9A712 _struct_ref_seq.db_align_beg 37 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 37 _struct_ref_seq.pdbx_auth_seq_align_end 212 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KQT MSE A 1 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -18 1 1 4KQT GLY A 2 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -17 2 1 4KQT SER A 3 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -16 3 1 4KQT ASP A 4 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -15 4 1 4KQT LYS A 5 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -14 5 1 4KQT ILE A 6 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -13 6 1 4KQT HIS A 7 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -12 7 1 4KQT HIS A 8 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -11 8 1 4KQT HIS A 9 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -10 9 1 4KQT HIS A 10 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -9 10 1 4KQT HIS A 11 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -8 11 1 4KQT HIS A 12 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -7 12 1 4KQT GLU A 13 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -6 13 1 4KQT ASN A 14 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -5 14 1 4KQT LEU A 15 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -4 15 1 4KQT TYR A 16 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -3 16 1 4KQT PHE A 17 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -2 17 1 4KQT GLN A 18 ? UNP Q9A712 ? ? 'EXPRESSION TAG' -1 18 1 4KQT GLY A 19 ? UNP Q9A712 ? ? 'EXPRESSION TAG' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4KQT # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.41 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 72.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;0.20M sodium chloride, 40.00% polyethylene glycol 400, 0.1M Na/K phosphate pH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2013-01-23 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97917 1.0 2 0.91837 1.0 3 0.97862 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97917,0.91837,0.97862 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4KQT _reflns.d_resolution_high 2.83 _reflns.d_resolution_low 45.677 _reflns.number_obs 9290 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_netI_over_sigmaI 16.650 _reflns.percent_possible_obs 99.700 _reflns.B_iso_Wilson_estimate 90.539 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.830 2.930 5054 ? 903 0.946 1.9 ? ? ? ? ? 99.800 1 1 2.930 3.050 4935 ? 934 0.687 2.4 ? ? ? ? ? 99.600 2 1 3.050 3.190 5041 ? 913 0.395 4.2 ? ? ? ? ? 99.700 3 1 3.190 3.350 5119 ? 886 0.278 5.9 ? ? ? ? ? 99.900 4 1 3.350 3.560 5265 ? 919 0.159 10.0 ? ? ? ? ? 100.000 5 1 3.560 3.840 5264 ? 946 0.099 15.4 ? ? ? ? ? 99.900 6 1 3.840 4.220 4851 ? 919 0.067 21.1 ? ? ? ? ? 99.500 7 1 4.220 4.820 5271 ? 913 0.049 29.0 ? ? ? ? ? 100.000 8 1 4.820 6.050 4997 ? 948 0.049 27.4 ? ? ? ? ? 99.700 9 1 6.050 45.677 5266 ? 1008 0.025 45.6 ? ? ? ? ? 99.300 10 1 # _refine.entry_id 4KQT _refine.ls_d_res_high 2.8300 _refine.ls_d_res_low 45.677 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7400 _refine.ls_number_reflns_obs 8849 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. PEG MODELED IS PRESENT IN CRYO/CRYSTALLIZATION CONDITIONS. 5. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 6. ZERO-OCCUPANCY ATOMS WERE PLACED NEAR THE THREE-FOLD AXIS TO EXCLUDE SOLVENT MASK NEAR THIS REGION. 7. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2101 _refine.ls_R_factor_R_work 0.2084 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2452 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_number_reflns_R_free 441 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 85.6935 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.9300 _refine.aniso_B[2][2] 2.9300 _refine.aniso_B[3][3] -9.5000 _refine.aniso_B[1][2] 2.9300 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9530 _refine.correlation_coeff_Fo_to_Fc_free 0.9220 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.3710 _refine.pdbx_overall_ESU_R_Free 0.2750 _refine.overall_SU_ML 0.2350 _refine.overall_SU_B 27.6790 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 157.790 _refine.B_iso_min 60.960 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1296 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 1334 _refine_hist.d_res_high 2.8300 _refine_hist.d_res_low 45.677 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1346 0.007 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1350 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1809 1.019 1.977 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3095 0.702 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 170 3.123 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 62 34.660 25.484 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 240 12.071 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10 12.197 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 211 0.052 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1523 0.004 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 288 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 677 2.581 7.067 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 676 2.507 7.059 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 845 4.161 10.587 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.8300 _refine_ls_shell.d_res_low 2.9040 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 660 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3570 _refine_ls_shell.R_factor_R_free 0.4390 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 686 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4KQT _struct.title ;Crystal structure of a putative outer membrane chaperone (OmpH-like) (CC_1914) from Caulobacter crescentus CB15 at 2.83 A resolution (PSI Community Target, Shapiro) ; _struct.pdbx_descriptor 'Putative outer membrane chaperone (OmpH-like)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PF03938 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, CHAPERONE ; _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.entry_id 4KQT # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 32 ? SER A 40 ? SER A 49 SER A 57 1 ? 9 HELX_P HELX_P2 2 SER A 40 ? LYS A 79 ? SER A 57 LYS A 96 1 ? 40 HELX_P HELX_P3 3 ALA A 83 ? GLN A 138 ? ALA A 100 GLN A 155 1 ? 56 HELX_P HELX_P4 4 GLU A 147 ? VAL A 149 ? GLU A 164 VAL A 166 5 ? 3 HELX_P HELX_P5 5 ASN A 153 ? ASP A 157 ? ASN A 170 ASP A 174 5 ? 5 HELX_P HELX_P6 6 ILE A 158 ? ILE A 170 ? ILE A 175 ILE A 187 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 140 SG ? ? A CYS 46 A CYS 157 1_555 ? ? ? ? ? ? ? 2.050 ? covale1 covale ? ? A VAL 149 C ? ? ? 1_555 A MSE 150 N ? ? A VAL 166 A MSE 167 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 150 C ? ? ? 1_555 A LEU 151 N ? ? A MSE 167 A LEU 168 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A ALA 155 C ? ? ? 1_555 A MSE 156 N ? ? A ALA 172 A MSE 173 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 156 C ? ? ? 1_555 A ASP 157 N ? ? A MSE 173 A ASP 174 1_555 ? ? ? ? ? ? ? 1.337 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 28 ? PHE A 31 ? VAL A 45 PHE A 48 A 2 VAL A 142 ? ASP A 145 ? VAL A 159 ASP A 162 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id CYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 29 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id CYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 46 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LEU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 144 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 161 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PEG A 501' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PEG A 502' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PGE A 503' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PGE A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 60 ? GLU A 77 . ? 1_555 ? 2 AC1 4 ARG A 108 ? ARG A 125 . ? 1_555 ? 3 AC1 4 ARG A 177 ? ARG A 194 . ? 1_555 ? 4 AC1 4 ARG A 179 ? ARG A 196 . ? 1_555 ? 5 AC2 2 GLN A 106 ? GLN A 123 . ? 1_555 ? 6 AC2 2 LYS A 110 ? LYS A 127 . ? 1_555 ? 7 AC3 3 ARG A 65 ? ARG A 82 . ? 1_555 ? 8 AC3 3 GLN A 95 ? GLN A 112 . ? 1_555 ? 9 AC3 3 ALA A 98 ? ALA A 115 . ? 1_555 ? 10 AC4 2 ALA A 137 ? ALA A 154 . ? 1_555 ? 11 AC4 2 GLN A 138 ? GLN A 155 . ? 1_555 ? # _atom_sites.entry_id 4KQT _atom_sites.fract_transf_matrix[1][1] 0.009103 _atom_sites.fract_transf_matrix[1][2] 0.005256 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010512 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006109 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 ? ? ? A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 THR 20 37 37 THR THR A . n A 1 21 HIS 21 38 38 HIS HIS A . n A 1 22 GLY 22 39 39 GLY GLY A . n A 1 23 PRO 23 40 40 PRO PRO A . n A 1 24 ALA 24 41 41 ALA ALA A . n A 1 25 LEU 25 42 42 LEU LEU A . n A 1 26 PRO 26 43 43 PRO PRO A . n A 1 27 GLY 27 44 44 GLY GLY A . n A 1 28 VAL 28 45 45 VAL VAL A . n A 1 29 CYS 29 46 46 CYS CYS A . n A 1 30 ILE 30 47 47 ILE ILE A . n A 1 31 PHE 31 48 48 PHE PHE A . n A 1 32 SER 32 49 49 SER SER A . n A 1 33 SER 33 50 50 SER SER A . n A 1 34 PRO 34 51 51 PRO PRO A . n A 1 35 ARG 35 52 52 ARG ARG A . n A 1 36 ALA 36 53 53 ALA ALA A . n A 1 37 VAL 37 54 54 VAL VAL A . n A 1 38 GLY 38 55 55 GLY GLY A . n A 1 39 SER 39 56 56 SER SER A . n A 1 40 SER 40 57 57 SER SER A . n A 1 41 LEU 41 58 58 LEU LEU A . n A 1 42 VAL 42 59 59 VAL VAL A . n A 1 43 GLY 43 60 60 GLY GLY A . n A 1 44 LYS 44 61 61 LYS LYS A . n A 1 45 ALA 45 62 62 ALA ALA A . n A 1 46 VAL 46 63 63 VAL VAL A . n A 1 47 ASP 47 64 64 ASP ASP A . n A 1 48 ALA 48 65 65 ALA ALA A . n A 1 49 ARG 49 66 66 ARG ARG A . n A 1 50 LEU 50 67 67 LEU LEU A . n A 1 51 LYS 51 68 68 LYS LYS A . n A 1 52 THR 52 69 69 THR THR A . n A 1 53 ILE 53 70 70 ILE ILE A . n A 1 54 ILE 54 71 71 ILE ILE A . n A 1 55 GLN 55 72 72 GLN GLN A . n A 1 56 GLN 56 73 73 GLN GLN A . n A 1 57 VAL 57 74 74 VAL VAL A . n A 1 58 ASN 58 75 75 ASN ASN A . n A 1 59 ALA 59 76 76 ALA ALA A . n A 1 60 GLU 60 77 77 GLU GLU A . n A 1 61 LEU 61 78 78 LEU LEU A . n A 1 62 THR 62 79 79 THR THR A . n A 1 63 GLY 63 80 80 GLY GLY A . n A 1 64 GLU 64 81 81 GLU GLU A . n A 1 65 ARG 65 82 82 ARG ARG A . n A 1 66 THR 66 83 83 THR THR A . n A 1 67 ALA 67 84 84 ALA ALA A . n A 1 68 LEU 68 85 85 LEU LEU A . n A 1 69 ASP 69 86 86 ASP ASP A . n A 1 70 ASN 70 87 87 ASN ASN A . n A 1 71 GLU 71 88 88 GLU GLU A . n A 1 72 ALA 72 89 89 ALA ALA A . n A 1 73 LYS 73 90 90 LYS LYS A . n A 1 74 ALA 74 91 91 ALA ALA A . n A 1 75 LEU 75 92 92 LEU LEU A . n A 1 76 ASP 76 93 93 ASP ASP A . n A 1 77 ALA 77 94 94 ALA ALA A . n A 1 78 LYS 78 95 95 LYS LYS A . n A 1 79 LYS 79 96 96 LYS LYS A . n A 1 80 THR 80 97 97 THR THR A . n A 1 81 THR 81 98 98 THR THR A . n A 1 82 ILE 82 99 99 ILE ILE A . n A 1 83 ALA 83 100 100 ALA ALA A . n A 1 84 GLN 84 101 101 GLN GLN A . n A 1 85 ASP 85 102 102 ASP ASP A . n A 1 86 ALA 86 103 103 ALA ALA A . n A 1 87 LEU 87 104 104 LEU LEU A . n A 1 88 GLU 88 105 105 GLU GLU A . n A 1 89 GLN 89 106 106 GLN GLN A . n A 1 90 GLN 90 107 107 GLN GLN A . n A 1 91 ALA 91 108 108 ALA ALA A . n A 1 92 ALA 92 109 109 ALA ALA A . n A 1 93 THR 93 110 110 THR THR A . n A 1 94 LEU 94 111 111 LEU LEU A . n A 1 95 GLN 95 112 112 GLN GLN A . n A 1 96 ALA 96 113 113 ALA ALA A . n A 1 97 LYS 97 114 114 LYS LYS A . n A 1 98 ALA 98 115 115 ALA ALA A . n A 1 99 ASN 99 116 116 ASN ASN A . n A 1 100 ALA 100 117 117 ALA ALA A . n A 1 101 TRP 101 118 118 TRP TRP A . n A 1 102 GLN 102 119 119 GLN GLN A . n A 1 103 ARG 103 120 120 ARG ARG A . n A 1 104 LYS 104 121 121 LYS LYS A . n A 1 105 GLY 105 122 122 GLY GLY A . n A 1 106 GLN 106 123 123 GLN GLN A . n A 1 107 LEU 107 124 124 LEU LEU A . n A 1 108 ARG 108 125 125 ARG ARG A . n A 1 109 GLN 109 126 126 GLN GLN A . n A 1 110 LYS 110 127 127 LYS LYS A . n A 1 111 GLU 111 128 128 GLU GLU A . n A 1 112 VAL 112 129 129 VAL VAL A . n A 1 113 GLU 113 130 130 GLU GLU A . n A 1 114 ALA 114 131 131 ALA ALA A . n A 1 115 THR 115 132 132 THR THR A . n A 1 116 GLU 116 133 133 GLU GLU A . n A 1 117 GLN 117 134 134 GLN GLN A . n A 1 118 LYS 118 135 135 LYS LYS A . n A 1 119 ALA 119 136 136 ALA ALA A . n A 1 120 LEU 120 137 137 LEU LEU A . n A 1 121 SER 121 138 138 SER SER A . n A 1 122 ARG 122 139 139 ARG ARG A . n A 1 123 VAL 123 140 140 VAL VAL A . n A 1 124 TYR 124 141 141 TYR TYR A . n A 1 125 GLN 125 142 142 GLN GLN A . n A 1 126 GLU 126 143 143 GLU GLU A . n A 1 127 LEU 127 144 144 LEU LEU A . n A 1 128 ASN 128 145 145 ASN ASN A . n A 1 129 THR 129 146 146 THR THR A . n A 1 130 PRO 130 147 147 PRO PRO A . n A 1 131 ILE 131 148 148 ILE ILE A . n A 1 132 GLN 132 149 149 GLN GLN A . n A 1 133 GLN 133 150 150 GLN GLN A . n A 1 134 VAL 134 151 151 VAL VAL A . n A 1 135 TYR 135 152 152 TYR TYR A . n A 1 136 GLN 136 153 153 GLN GLN A . n A 1 137 ALA 137 154 154 ALA ALA A . n A 1 138 GLN 138 155 155 GLN GLN A . n A 1 139 LYS 139 156 156 LYS LYS A . n A 1 140 CYS 140 157 157 CYS CYS A . n A 1 141 SER 141 158 158 SER SER A . n A 1 142 VAL 142 159 159 VAL VAL A . n A 1 143 LEU 143 160 160 LEU LEU A . n A 1 144 LEU 144 161 161 LEU LEU A . n A 1 145 ASP 145 162 162 ASP ASP A . n A 1 146 ARG 146 163 163 ARG ARG A . n A 1 147 GLU 147 164 164 GLU GLU A . n A 1 148 ALA 148 165 165 ALA ALA A . n A 1 149 VAL 149 166 166 VAL VAL A . n A 1 150 MSE 150 167 167 MSE MSE A . n A 1 151 LEU 151 168 168 LEU LEU A . n A 1 152 ALA 152 169 169 ALA ALA A . n A 1 153 ASN 153 170 170 ASN ASN A . n A 1 154 PRO 154 171 171 PRO PRO A . n A 1 155 ALA 155 172 172 ALA ALA A . n A 1 156 MSE 156 173 173 MSE MSE A . n A 1 157 ASP 157 174 174 ASP ASP A . n A 1 158 ILE 158 175 175 ILE ILE A . n A 1 159 THR 159 176 176 THR THR A . n A 1 160 ASP 160 177 177 ASP ASP A . n A 1 161 ALA 161 178 178 ALA ALA A . n A 1 162 VAL 162 179 179 VAL VAL A . n A 1 163 VAL 163 180 180 VAL VAL A . n A 1 164 ALA 164 181 181 ALA ALA A . n A 1 165 ALA 165 182 182 ALA ALA A . n A 1 166 LEU 166 183 183 LEU LEU A . n A 1 167 ASP 167 184 184 ASP ASP A . n A 1 168 ALA 168 185 185 ALA ALA A . n A 1 169 ARG 169 186 186 ARG ARG A . n A 1 170 ILE 170 187 187 ILE ILE A . n A 1 171 LYS 171 188 188 LYS LYS A . n A 1 172 THR 172 189 189 THR THR A . n A 1 173 LEU 173 190 190 LEU LEU A . n A 1 174 THR 174 191 191 THR THR A . n A 1 175 PHE 175 192 192 PHE PHE A . n A 1 176 ASP 176 193 193 ASP ASP A . n A 1 177 ARG 177 194 194 ARG ARG A . n A 1 178 GLU 178 195 195 GLU GLU A . n A 1 179 ARG 179 196 196 ARG ARG A . n A 1 180 LEU 180 197 197 LEU LEU A . n A 1 181 ASP 181 198 198 ASP ASP A . n A 1 182 GLN 182 199 199 GLN GLN A . n A 1 183 GLN 183 200 200 GLN GLN A . n A 1 184 VAL 184 201 ? ? ? A . n A 1 185 PRO 185 202 ? ? ? A . n A 1 186 GLY 186 203 ? ? ? A . n A 1 187 ALA 187 204 ? ? ? A . n A 1 188 ALA 188 205 ? ? ? A . n A 1 189 ALA 189 206 ? ? ? A . n A 1 190 LEU 190 207 ? ? ? A . n A 1 191 GLN 191 208 ? ? ? A . n A 1 192 PRO 192 209 ? ? ? A . n A 1 193 THR 193 210 ? ? ? A . n A 1 194 ASN 194 211 ? ? ? A . n A 1 195 LYS 195 212 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG 1 501 501 PEG PEG A . C 2 PEG 1 502 502 PEG PEG A . D 3 PGE 1 503 503 PGE PGE A . E 3 PGE 1 504 504 PGE PGE A . F 4 HOH 1 601 505 HOH HOH A . F 4 HOH 2 602 506 HOH HOH A . F 4 HOH 3 603 507 HOH HOH A . F 4 HOH 4 604 508 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 150 A MSE 167 ? MET SELENOMETHIONINE 2 A MSE 156 A MSE 173 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-12 2 'Structure model' 1 1 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 18.8879 _pdbx_refine_tls.origin_y 69.0939 _pdbx_refine_tls.origin_z 63.7845 _pdbx_refine_tls.T[1][1] 0.0699 _pdbx_refine_tls.T[2][2] 0.0656 _pdbx_refine_tls.T[3][3] 0.1457 _pdbx_refine_tls.T[1][2] -0.0302 _pdbx_refine_tls.T[1][3] 0.0014 _pdbx_refine_tls.T[2][3] -0.0523 _pdbx_refine_tls.L[1][1] 0.5340 _pdbx_refine_tls.L[2][2] 0.1805 _pdbx_refine_tls.L[3][3] 2.2485 _pdbx_refine_tls.L[1][2] 0.1527 _pdbx_refine_tls.L[1][3] -0.8475 _pdbx_refine_tls.L[2][3] -0.2228 _pdbx_refine_tls.S[1][1] -0.0693 _pdbx_refine_tls.S[2][2] 0.0331 _pdbx_refine_tls.S[3][3] 0.0362 _pdbx_refine_tls.S[1][2] -0.0420 _pdbx_refine_tls.S[1][3] 0.0065 _pdbx_refine_tls.S[2][3] -0.0474 _pdbx_refine_tls.S[2][1] -0.0289 _pdbx_refine_tls.S[3][1] -0.0400 _pdbx_refine_tls.S[3][2] 0.0373 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 200 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'July 4, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4KQT _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE CONSTRUCT (37-212) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG.' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 97 ? ? -89.12 41.00 2 1 THR A 98 ? ? -138.73 -49.85 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU -4 ? CG ? A LEU 15 CG 2 1 Y 1 A LEU -4 ? CD1 ? A LEU 15 CD1 3 1 Y 1 A LEU -4 ? CD2 ? A LEU 15 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A ASN -5 ? A ASN 14 15 1 Y 1 A VAL 201 ? A VAL 184 16 1 Y 1 A PRO 202 ? A PRO 185 17 1 Y 1 A GLY 203 ? A GLY 186 18 1 Y 1 A ALA 204 ? A ALA 187 19 1 Y 1 A ALA 205 ? A ALA 188 20 1 Y 1 A ALA 206 ? A ALA 189 21 1 Y 1 A LEU 207 ? A LEU 190 22 1 Y 1 A GLN 208 ? A GLN 191 23 1 Y 1 A PRO 209 ? A PRO 192 24 1 Y 1 A THR 210 ? A THR 193 25 1 Y 1 A ASN 211 ? A ASN 194 26 1 Y 1 A LYS 212 ? A LYS 195 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 'TRIETHYLENE GLYCOL' PGE 4 water HOH #