data_4KYY # _entry.id 4KYY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KYY pdb_00004kyy 10.2210/pdb4kyy/pdb NDB NA2480 ? ? RCSB RCSB079970 ? ? WWPDB D_1000079970 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-12 2 'Structure model' 1 1 2024-02-28 3 'Structure model' 1 2 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_site 7 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.value' 21 2 'Structure model' '_struct_conn.pdbx_dist_value' 22 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4KYY _pdbx_database_status.recvd_initial_deposition_date 2013-05-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smith, P.C.' 1 'Shuman, S.' 2 # _citation.id primary _citation.title 'Crystal Structure of RNA 17-mer UUCGGUUUUGAUCCGGA duplex' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smith, P.C.' 1 ? primary 'Shuman, S.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA 17-mer' 5398.189 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 7 ? ? ? ? 3 water nat water 18.015 85 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUCGGUUUUGAUCCGGA _entity_poly.pdbx_seq_one_letter_code_can UUCGGUUUUGAUCCGGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 C n 1 4 G n 1 5 G n 1 6 U n 1 7 U n 1 8 U n 1 9 U n 1 10 G n 1 11 A n 1 12 U n 1 13 C n 1 14 C n 1 15 G n 1 16 G n 1 17 A n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n B 1 1 U 1 1 1 U U B . n B 1 2 U 2 2 2 U U B . n B 1 3 C 3 3 3 C C B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 U 6 6 6 U U B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 U 9 9 9 U U B . n B 1 10 G 10 10 10 G G B . n B 1 11 A 11 11 11 A A B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 C 14 14 14 C C B . n B 1 15 G 15 15 15 G G B . n B 1 16 G 16 16 16 G G B . n B 1 17 A 17 17 17 A A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 101 1 K K A . D 2 K 1 102 2 K K A . E 2 K 1 103 4 K K A . F 2 K 1 104 5 K K A . G 2 K 1 105 6 K K A . H 2 K 1 101 3 K K B . I 2 K 1 102 7 K K B . J 3 HOH 1 201 1 HOH HOH A . J 3 HOH 2 202 4 HOH HOH A . J 3 HOH 3 203 5 HOH HOH A . J 3 HOH 4 204 7 HOH HOH A . J 3 HOH 5 205 10 HOH HOH A . J 3 HOH 6 206 11 HOH HOH A . J 3 HOH 7 207 12 HOH HOH A . J 3 HOH 8 208 13 HOH HOH A . J 3 HOH 9 209 22 HOH HOH A . J 3 HOH 10 210 25 HOH HOH A . J 3 HOH 11 211 30 HOH HOH A . J 3 HOH 12 212 35 HOH HOH A . J 3 HOH 13 213 37 HOH HOH A . J 3 HOH 14 214 38 HOH HOH A . J 3 HOH 15 215 40 HOH HOH A . J 3 HOH 16 216 42 HOH HOH A . J 3 HOH 17 217 45 HOH HOH A . J 3 HOH 18 218 48 HOH HOH A . J 3 HOH 19 219 49 HOH HOH A . J 3 HOH 20 220 53 HOH HOH A . J 3 HOH 21 221 54 HOH HOH A . J 3 HOH 22 222 55 HOH HOH A . J 3 HOH 23 223 56 HOH HOH A . J 3 HOH 24 224 57 HOH HOH A . J 3 HOH 25 225 62 HOH HOH A . J 3 HOH 26 226 63 HOH HOH A . J 3 HOH 27 227 65 HOH HOH A . J 3 HOH 28 228 66 HOH HOH A . J 3 HOH 29 229 70 HOH HOH A . J 3 HOH 30 230 71 HOH HOH A . J 3 HOH 31 231 77 HOH HOH A . J 3 HOH 32 232 79 HOH HOH A . J 3 HOH 33 233 82 HOH HOH A . J 3 HOH 34 234 83 HOH HOH A . J 3 HOH 35 235 85 HOH HOH A . K 3 HOH 1 201 2 HOH HOH B . K 3 HOH 2 202 3 HOH HOH B . K 3 HOH 3 203 6 HOH HOH B . K 3 HOH 4 204 8 HOH HOH B . K 3 HOH 5 205 9 HOH HOH B . K 3 HOH 6 206 14 HOH HOH B . K 3 HOH 7 207 15 HOH HOH B . K 3 HOH 8 208 16 HOH HOH B . K 3 HOH 9 209 17 HOH HOH B . K 3 HOH 10 210 18 HOH HOH B . K 3 HOH 11 211 19 HOH HOH B . K 3 HOH 12 212 20 HOH HOH B . K 3 HOH 13 213 21 HOH HOH B . K 3 HOH 14 214 23 HOH HOH B . K 3 HOH 15 215 24 HOH HOH B . K 3 HOH 16 216 26 HOH HOH B . K 3 HOH 17 217 27 HOH HOH B . K 3 HOH 18 218 28 HOH HOH B . K 3 HOH 19 219 29 HOH HOH B . K 3 HOH 20 220 31 HOH HOH B . K 3 HOH 21 221 32 HOH HOH B . K 3 HOH 22 222 33 HOH HOH B . K 3 HOH 23 223 34 HOH HOH B . K 3 HOH 24 224 36 HOH HOH B . K 3 HOH 25 225 39 HOH HOH B . K 3 HOH 26 226 41 HOH HOH B . K 3 HOH 27 227 43 HOH HOH B . K 3 HOH 28 228 44 HOH HOH B . K 3 HOH 29 229 46 HOH HOH B . K 3 HOH 30 230 47 HOH HOH B . K 3 HOH 31 231 50 HOH HOH B . K 3 HOH 32 232 51 HOH HOH B . K 3 HOH 33 233 52 HOH HOH B . K 3 HOH 34 234 58 HOH HOH B . K 3 HOH 35 235 59 HOH HOH B . K 3 HOH 36 236 60 HOH HOH B . K 3 HOH 37 237 61 HOH HOH B . K 3 HOH 38 238 64 HOH HOH B . K 3 HOH 39 239 67 HOH HOH B . K 3 HOH 40 240 68 HOH HOH B . K 3 HOH 41 241 69 HOH HOH B . K 3 HOH 42 242 72 HOH HOH B . K 3 HOH 43 243 73 HOH HOH B . K 3 HOH 44 244 74 HOH HOH B . K 3 HOH 45 245 75 HOH HOH B . K 3 HOH 46 246 76 HOH HOH B . K 3 HOH 47 247 78 HOH HOH B . K 3 HOH 48 248 80 HOH HOH B . K 3 HOH 49 249 81 HOH HOH B . K 3 HOH 50 250 84 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.8.1_1168)' ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 4KYY _cell.length_a 44.010 _cell.length_b 44.010 _cell.length_c 91.670 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4KYY _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4KYY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.2M KF, 40%(w/v) hexelene glycol (MPD), pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 130 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-05-03 _diffrn_detector.details 'See Beamline Documendation (SI 111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 4KYY _reflns.observed_criterion_sigma_I -999 _reflns.observed_criterion_sigma_F -999 _reflns.d_resolution_low 99 _reflns.d_resolution_high 2.35 _reflns.number_obs 4651 _reflns.number_all 4659 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 20.81 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4KYY _refine.ls_number_reflns_obs 4621 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.193 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 99.23 _refine.ls_R_factor_obs 0.1994 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1949 _refine.ls_R_factor_R_free 0.2393 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.65 _refine.ls_number_reflns_R_free 446 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'UUCGG RNA duplex idealized structure' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.39 _refine.pdbx_overall_phase_error 29.41 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 712 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 804 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 35.193 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.004 ? ? 792 ? 'X-RAY DIFFRACTION' f_angle_d 0.776 ? ? 1230 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 10.568 ? ? 400 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.031 ? ? 168 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 34 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.35 2.6849 1347 0.3019 100.00 0.4170 . . 157 . . . . 'X-RAY DIFFRACTION' . 2.6849 3.3822 1374 0.2352 99.00 0.2716 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.3822 35.1971 1454 0.1517 99.00 0.1852 . . 151 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4KYY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4KYY _struct.title 'Crystal Structure of RNA 17-mer UUCGGUUUUGAUCCGGA duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KYY _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA duplex, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4KYY _struct_ref.pdbx_db_accession 4KYY _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4KYY A 1 ? 17 ? 4KYY 1 ? 17 ? 1 17 2 1 4KYY B 1 ? 17 ? 4KYY 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4070 ? 1 MORE -41 ? 1 'SSA (A^2)' 5260 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 1 O4 ? ? ? 1_555 D K . K ? ? A U 1 A K 102 1_555 ? ? ? ? ? ? ? 3.462 ? ? metalc2 metalc ? ? A U 2 O4 ? ? ? 1_555 D K . K ? ? A U 2 A K 102 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc3 metalc ? ? A G 5 O6 ? ? ? 1_555 G K . K ? ? A G 5 A K 105 1_555 ? ? ? ? ? ? ? 2.919 ? ? metalc4 metalc ? ? A U 6 O4 ? ? ? 1_555 G K . K ? ? A U 6 A K 105 1_555 ? ? ? ? ? ? ? 2.970 ? ? metalc5 metalc ? ? A U 7 O4 ? ? ? 1_555 C K . K ? ? A U 7 A K 101 1_555 ? ? ? ? ? ? ? 3.171 ? ? metalc6 metalc ? ? A U 8 O4 ? ? ? 1_555 C K . K ? ? A U 8 A K 101 1_555 ? ? ? ? ? ? ? 2.702 ? ? metalc7 metalc ? ? A U 9 O4 ? ? ? 1_555 E K . K ? ? A U 9 A K 103 1_555 ? ? ? ? ? ? ? 2.948 ? ? metalc8 metalc ? ? A G 10 O6 ? ? ? 1_555 E K . K ? ? A G 10 A K 103 1_555 ? ? ? ? ? ? ? 2.929 ? ? metalc9 metalc ? ? A U 12 O4 ? ? ? 1_555 H K . K ? ? A U 12 B K 101 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc10 metalc ? ? A G 15 O6 ? ? ? 1_555 F K . K ? ? A G 15 A K 104 1_555 ? ? ? ? ? ? ? 3.210 ? ? metalc11 metalc ? ? A G 16 O6 ? ? ? 1_555 F K . K ? ? A G 16 A K 104 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc12 metalc ? ? C K . K ? ? ? 1_555 B G 10 O6 ? ? A K 101 B G 10 1_555 ? ? ? ? ? ? ? 2.817 ? ? metalc13 metalc ? ? C K . K ? ? ? 1_555 K HOH . O ? ? A K 101 B HOH 207 1_555 ? ? ? ? ? ? ? 3.275 ? ? metalc14 metalc ? ? C K . K ? ? ? 1_555 K HOH . O ? ? A K 101 B HOH 236 1_555 ? ? ? ? ? ? ? 2.585 ? ? metalc15 metalc ? ? C K . K ? ? ? 1_555 K HOH . O ? ? A K 101 B HOH 238 1_555 ? ? ? ? ? ? ? 2.759 ? ? metalc16 metalc ? ? D K . K ? ? ? 1_555 J HOH . O ? ? A K 102 A HOH 222 1_555 ? ? ? ? ? ? ? 2.912 ? ? metalc17 metalc ? ? D K . K ? ? ? 1_555 B G 15 O6 ? ? A K 102 B G 15 1_555 ? ? ? ? ? ? ? 2.912 ? ? metalc18 metalc ? ? D K . K ? ? ? 1_555 B G 16 O6 ? ? A K 102 B G 16 1_555 ? ? ? ? ? ? ? 2.929 ? ? metalc19 metalc ? ? D K . K ? ? ? 1_555 K HOH . O ? ? A K 102 B HOH 241 1_555 ? ? ? ? ? ? ? 2.923 ? ? metalc20 metalc ? ? D K . K ? ? ? 1_555 K HOH . O ? ? A K 102 B HOH 242 1_555 ? ? ? ? ? ? ? 3.454 ? ? metalc21 metalc ? ? E K . K ? ? ? 1_555 J HOH . O ? ? A K 103 A HOH 201 1_555 ? ? ? ? ? ? ? 3.333 ? ? metalc22 metalc ? ? E K . K ? ? ? 1_555 J HOH . O ? ? A K 103 A HOH 205 1_555 ? ? ? ? ? ? ? 2.843 ? ? metalc23 metalc ? ? E K . K ? ? ? 1_555 J HOH . O ? ? A K 103 A HOH 226 1_555 ? ? ? ? ? ? ? 3.005 ? ? metalc24 metalc ? ? E K . K ? ? ? 1_555 B U 8 O4 ? ? A K 103 B U 8 1_555 ? ? ? ? ? ? ? 2.939 ? ? metalc25 metalc ? ? E K . K ? ? ? 1_555 K HOH . O ? ? A K 103 B HOH 217 1_555 ? ? ? ? ? ? ? 3.261 ? ? metalc26 metalc ? ? F K . K ? ? ? 1_555 J HOH . O ? ? A K 104 A HOH 227 1_555 ? ? ? ? ? ? ? 2.868 ? ? metalc27 metalc ? ? F K . K ? ? ? 1_555 J HOH . O ? ? A K 104 A HOH 230 1_555 ? ? ? ? ? ? ? 3.019 ? ? metalc28 metalc ? ? F K . K ? ? ? 1_555 B U 1 O4 ? ? A K 104 B U 1 1_555 ? ? ? ? ? ? ? 3.429 ? ? metalc29 metalc ? ? F K . K ? ? ? 1_555 B U 2 O4 ? ? A K 104 B U 2 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc30 metalc ? ? G K . K ? ? ? 1_555 J HOH . O ? ? A K 105 A HOH 207 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc31 metalc ? ? G K . K ? ? ? 1_555 J HOH . O ? ? A K 105 A HOH 208 1_555 ? ? ? ? ? ? ? 3.029 ? ? metalc32 metalc ? ? G K . K ? ? ? 1_555 J HOH . O ? ? A K 105 A HOH 217 1_555 ? ? ? ? ? ? ? 2.866 ? ? metalc33 metalc ? ? G K . K ? ? ? 1_555 B U 12 O4 ? ? A K 105 B U 12 1_555 ? ? ? ? ? ? ? 2.842 ? ? metalc34 metalc ? ? G K . K ? ? ? 1_555 K HOH . O ? ? A K 105 B HOH 223 1_555 ? ? ? ? ? ? ? 2.921 ? ? metalc35 metalc ? ? J HOH . O ? ? ? 1_555 H K . K ? ? A HOH 225 B K 101 1_555 ? ? ? ? ? ? ? 3.084 ? ? metalc36 metalc ? ? J HOH . O ? ? ? 1_555 H K . K ? ? A HOH 228 B K 101 1_555 ? ? ? ? ? ? ? 2.979 ? ? metalc37 metalc ? ? J HOH . O ? ? ? 1_555 I K . K ? ? A HOH 228 B K 102 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc38 metalc ? ? B G 4 O6 ? ? ? 1_555 I K . K ? ? B G 4 B K 102 1_555 ? ? ? ? ? ? ? 2.790 ? ? metalc39 metalc ? ? B G 5 O6 ? ? ? 1_555 H K . K ? ? B G 5 B K 101 1_555 ? ? ? ? ? ? ? 2.751 ? ? metalc40 metalc ? ? B G 5 O6 ? ? ? 1_555 I K . K ? ? B G 5 B K 102 1_555 ? ? ? ? ? ? ? 2.869 ? ? metalc41 metalc ? ? B U 6 O4 ? ? ? 1_555 H K . K ? ? B U 6 B K 101 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc42 metalc ? ? H K . K ? ? ? 1_555 K HOH . O ? ? B K 101 B HOH 237 1_555 ? ? ? ? ? ? ? 2.938 ? ? metalc43 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 102 B HOH 203 1_555 ? ? ? ? ? ? ? 3.177 ? ? metalc44 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 102 B HOH 216 1_555 ? ? ? ? ? ? ? 3.072 ? ? metalc45 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 102 B HOH 237 1_555 ? ? ? ? ? ? ? 3.440 ? ? metalc46 metalc ? ? I K . K ? ? ? 1_555 K HOH . O ? ? B K 102 B HOH 244 1_555 ? ? ? ? ? ? ? 2.864 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 B A 17 N1 ? ? A U 1 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 B A 17 N6 ? ? A U 1 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 B G 16 O6 ? ? A U 2 B G 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog4 hydrog ? ? A U 2 O2 ? ? ? 1_555 B G 16 N1 ? ? A U 2 B G 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 3 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 3 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 3 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 5 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 5 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 5 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 12 O2 ? ? A U 6 B U 12 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 12 N3 ? ? A U 6 B U 12 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 11 N1 ? ? A U 7 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 11 N6 ? ? A U 7 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 B G 10 O6 ? ? A U 8 B G 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A U 8 O2 ? ? ? 1_555 B G 10 N1 ? ? A U 8 B G 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A U 9 N3 ? ? ? 1_555 B U 9 O4 ? ? A U 9 B U 9 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 B U 8 O2 ? ? A G 10 B U 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 B U 8 N3 ? ? A G 10 B U 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 11 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 11 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 12 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 12 B U 6 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog26 hydrog ? ? A U 12 O2 ? ? ? 1_555 B U 6 N3 ? ? A U 12 B U 6 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 13 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 13 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 13 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 14 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 14 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 14 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 15 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 15 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 15 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N1 ? ? ? 1_555 B U 2 O2 ? ? A G 16 B U 2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A G 16 O6 ? ? ? 1_555 B U 2 N3 ? ? A G 16 B U 2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? A A 17 N1 ? ? ? 1_555 B U 1 N3 ? ? A A 17 B U 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 17 N6 ? ? ? 1_555 B U 1 O4 ? ? A A 17 B U 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 1 ? A U 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O4 ? A U 2 ? A U 2 ? 1_555 65.1 ? 2 O4 ? A U 1 ? A U 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? J HOH . ? A HOH 222 ? 1_555 55.8 ? 3 O4 ? A U 2 ? A U 2 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? J HOH . ? A HOH 222 ? 1_555 113.3 ? 4 O4 ? A U 1 ? A U 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B G 15 ? B G 15 ? 1_555 160.9 ? 5 O4 ? A U 2 ? A U 2 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B G 15 ? B G 15 ? 1_555 97.1 ? 6 O ? J HOH . ? A HOH 222 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B G 15 ? B G 15 ? 1_555 143.0 ? 7 O4 ? A U 1 ? A U 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B G 16 ? B G 16 ? 1_555 91.1 ? 8 O4 ? A U 2 ? A U 2 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B G 16 ? B G 16 ? 1_555 76.3 ? 9 O ? J HOH . ? A HOH 222 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B G 16 ? B G 16 ? 1_555 128.7 ? 10 O6 ? B G 15 ? B G 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B G 16 ? B G 16 ? 1_555 77.3 ? 11 O4 ? A U 1 ? A U 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 241 ? 1_555 111.2 ? 12 O4 ? A U 2 ? A U 2 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 241 ? 1_555 152.7 ? 13 O ? J HOH . ? A HOH 222 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 241 ? 1_555 80.7 ? 14 O6 ? B G 15 ? B G 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 241 ? 1_555 81.2 ? 15 O6 ? B G 16 ? B G 16 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 241 ? 1_555 76.8 ? 16 O4 ? A U 1 ? A U 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 242 ? 1_555 121.5 ? 17 O4 ? A U 2 ? A U 2 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 242 ? 1_555 139.8 ? 18 O ? J HOH . ? A HOH 222 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 242 ? 1_555 66.8 ? 19 O6 ? B G 15 ? B G 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 242 ? 1_555 76.4 ? 20 O6 ? B G 16 ? B G 16 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 242 ? 1_555 137.3 ? 21 O ? K HOH . ? B HOH 241 ? 1_555 K ? D K . ? A K 102 ? 1_555 O ? K HOH . ? B HOH 242 ? 1_555 66.5 ? 22 O6 ? A G 5 ? A G 5 ? 1_555 K ? G K . ? A K 105 ? 1_555 O4 ? A U 6 ? A U 6 ? 1_555 67.8 ? 23 O6 ? A G 5 ? A G 5 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 207 ? 1_555 101.6 ? 24 O4 ? A U 6 ? A U 6 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 207 ? 1_555 70.3 ? 25 O6 ? A G 5 ? A G 5 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 208 ? 1_555 95.4 ? 26 O4 ? A U 6 ? A U 6 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 208 ? 1_555 145.6 ? 27 O ? J HOH . ? A HOH 207 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 208 ? 1_555 144.1 ? 28 O6 ? A G 5 ? A G 5 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 217 ? 1_555 101.8 ? 29 O4 ? A U 6 ? A U 6 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 217 ? 1_555 131.1 ? 30 O ? J HOH . ? A HOH 207 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 217 ? 1_555 65.3 ? 31 O ? J HOH . ? A HOH 208 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? J HOH . ? A HOH 217 ? 1_555 80.4 ? 32 O6 ? A G 5 ? A G 5 ? 1_555 K ? G K . ? A K 105 ? 1_555 O4 ? B U 12 ? B U 12 ? 1_555 87.3 ? 33 O4 ? A U 6 ? A U 6 ? 1_555 K ? G K . ? A K 105 ? 1_555 O4 ? B U 12 ? B U 12 ? 1_555 73.3 ? 34 O ? J HOH . ? A HOH 207 ? 1_555 K ? G K . ? A K 105 ? 1_555 O4 ? B U 12 ? B U 12 ? 1_555 135.4 ? 35 O ? J HOH . ? A HOH 208 ? 1_555 K ? G K . ? A K 105 ? 1_555 O4 ? B U 12 ? B U 12 ? 1_555 76.3 ? 36 O ? J HOH . ? A HOH 217 ? 1_555 K ? G K . ? A K 105 ? 1_555 O4 ? B U 12 ? B U 12 ? 1_555 155.6 ? 37 O6 ? A G 5 ? A G 5 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 170.6 ? 38 O4 ? A U 6 ? A U 6 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 115.6 ? 39 O ? J HOH . ? A HOH 207 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 87.8 ? 40 O ? J HOH . ? A HOH 208 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 77.0 ? 41 O ? J HOH . ? A HOH 217 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 82.6 ? 42 O4 ? B U 12 ? B U 12 ? 1_555 K ? G K . ? A K 105 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 85.4 ? 43 O4 ? A U 7 ? A U 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O4 ? A U 8 ? A U 8 ? 1_555 63.5 ? 44 O4 ? A U 7 ? A U 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B G 10 ? B G 10 ? 1_555 89.2 ? 45 O4 ? A U 8 ? A U 8 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B G 10 ? B G 10 ? 1_555 79.7 ? 46 O4 ? A U 7 ? A U 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 207 ? 1_555 98.1 ? 47 O4 ? A U 8 ? A U 8 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 207 ? 1_555 91.6 ? 48 O6 ? B G 10 ? B G 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 207 ? 1_555 164.9 ? 49 O4 ? A U 7 ? A U 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 236 ? 1_555 150.0 ? 50 O4 ? A U 8 ? A U 8 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 236 ? 1_555 86.7 ? 51 O6 ? B G 10 ? B G 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 236 ? 1_555 89.1 ? 52 O ? K HOH . ? B HOH 207 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 236 ? 1_555 77.9 ? 53 O4 ? A U 7 ? A U 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 238 ? 1_555 111.9 ? 54 O4 ? A U 8 ? A U 8 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 238 ? 1_555 164.4 ? 55 O6 ? B G 10 ? B G 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 238 ? 1_555 85.4 ? 56 O ? K HOH . ? B HOH 207 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 238 ? 1_555 103.9 ? 57 O ? K HOH . ? B HOH 236 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? K HOH . ? B HOH 238 ? 1_555 97.8 ? 58 O4 ? A U 9 ? A U 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A G 10 ? A G 10 ? 1_555 71.2 ? 59 O4 ? A U 9 ? A U 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 201 ? 1_555 83.1 ? 60 O6 ? A G 10 ? A G 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 201 ? 1_555 78.1 ? 61 O4 ? A U 9 ? A U 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 205 ? 1_555 89.7 ? 62 O6 ? A G 10 ? A G 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 205 ? 1_555 145.2 ? 63 O ? J HOH . ? A HOH 201 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 205 ? 1_555 70.8 ? 64 O4 ? A U 9 ? A U 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 226 ? 1_555 87.4 ? 65 O6 ? A G 10 ? A G 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 226 ? 1_555 122.2 ? 66 O ? J HOH . ? A HOH 201 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 226 ? 1_555 153.2 ? 67 O ? J HOH . ? A HOH 205 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? A HOH 226 ? 1_555 84.2 ? 68 O4 ? A U 9 ? A U 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O4 ? B U 8 ? B U 8 ? 1_555 117.8 ? 69 O6 ? A G 10 ? A G 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O4 ? B U 8 ? B U 8 ? 1_555 79.2 ? 70 O ? J HOH . ? A HOH 201 ? 1_555 K ? E K . ? A K 103 ? 1_555 O4 ? B U 8 ? B U 8 ? 1_555 141.6 ? 71 O ? J HOH . ? A HOH 205 ? 1_555 K ? E K . ? A K 103 ? 1_555 O4 ? B U 8 ? B U 8 ? 1_555 135.4 ? 72 O ? J HOH . ? A HOH 226 ? 1_555 K ? E K . ? A K 103 ? 1_555 O4 ? B U 8 ? B U 8 ? 1_555 64.4 ? 73 O4 ? A U 9 ? A U 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 1_555 166.8 ? 74 O6 ? A G 10 ? A G 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 1_555 113.5 ? 75 O ? J HOH . ? A HOH 201 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 1_555 85.9 ? 76 O ? J HOH . ? A HOH 205 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 1_555 79.8 ? 77 O ? J HOH . ? A HOH 226 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 1_555 99.3 ? 78 O4 ? B U 8 ? B U 8 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? K HOH . ? B HOH 217 ? 1_555 75.4 ? 79 O4 ? A U 12 ? A U 12 ? 1_555 K ? H K . ? B K 101 ? 1_555 O ? J HOH . ? A HOH 225 ? 1_555 81.7 ? 80 O4 ? A U 12 ? A U 12 ? 1_555 K ? H K . ? B K 101 ? 1_555 O ? J HOH . ? A HOH 228 ? 1_555 72.8 ? 81 O ? J HOH . ? A HOH 225 ? 1_555 K ? H K . ? B K 101 ? 1_555 O ? J HOH . ? A HOH 228 ? 1_555 83.1 ? 82 O4 ? A U 12 ? A U 12 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B G 5 ? B G 5 ? 1_555 86.5 ? 83 O ? J HOH . ? A HOH 225 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B G 5 ? B G 5 ? 1_555 165.8 ? 84 O ? J HOH . ? A HOH 228 ? 1_555 K ? H K . ? B K 101 ? 1_555 O6 ? B G 5 ? B G 5 ? 1_555 85.8 ? 85 O4 ? A U 12 ? A U 12 ? 1_555 K ? H K . ? B K 101 ? 1_555 O4 ? B U 6 ? B U 6 ? 1_555 77.5 ? 86 O ? J HOH . ? A HOH 225 ? 1_555 K ? H K . ? B K 101 ? 1_555 O4 ? B U 6 ? B U 6 ? 1_555 117.3 ? 87 O ? J HOH . ? A HOH 228 ? 1_555 K ? H K . ? B K 101 ? 1_555 O4 ? B U 6 ? B U 6 ? 1_555 140.9 ? 88 O6 ? B G 5 ? B G 5 ? 1_555 K ? H K . ? B K 101 ? 1_555 O4 ? B U 6 ? B U 6 ? 1_555 67.4 ? 89 O4 ? A U 12 ? A U 12 ? 1_555 K ? H K . ? B K 101 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 145.4 ? 90 O ? J HOH . ? A HOH 225 ? 1_555 K ? H K . ? B K 101 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 103.9 ? 91 O ? J HOH . ? A HOH 228 ? 1_555 K ? H K . ? B K 101 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 74.1 ? 92 O6 ? B G 5 ? B G 5 ? 1_555 K ? H K . ? B K 101 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 81.4 ? 93 O4 ? B U 6 ? B U 6 ? 1_555 K ? H K . ? B K 101 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 125.7 ? 94 O6 ? A G 15 ? A G 15 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A G 16 ? A G 16 ? 1_555 71.2 ? 95 O6 ? A G 15 ? A G 15 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? J HOH . ? A HOH 227 ? 1_555 88.8 ? 96 O6 ? A G 16 ? A G 16 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? J HOH . ? A HOH 227 ? 1_555 86.8 ? 97 O6 ? A G 15 ? A G 15 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? J HOH . ? A HOH 230 ? 1_555 106.9 ? 98 O6 ? A G 16 ? A G 16 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? J HOH . ? A HOH 230 ? 1_555 150.1 ? 99 O ? J HOH . ? A HOH 227 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? J HOH . ? A HOH 230 ? 1_555 63.3 ? 100 O6 ? A G 15 ? A G 15 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 1 ? B U 1 ? 1_555 141.2 ? 101 O6 ? A G 16 ? A G 16 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 1 ? B U 1 ? 1_555 79.2 ? 102 O ? J HOH . ? A HOH 227 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 1 ? B U 1 ? 1_555 114.5 ? 103 O ? J HOH . ? A HOH 230 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 1 ? B U 1 ? 1_555 111.2 ? 104 O6 ? A G 15 ? A G 15 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 2 ? B U 2 ? 1_555 86.4 ? 105 O6 ? A G 16 ? A G 16 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 2 ? B U 2 ? 1_555 73.9 ? 106 O ? J HOH . ? A HOH 227 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 2 ? B U 2 ? 1_555 160.6 ? 107 O ? J HOH . ? A HOH 230 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 2 ? B U 2 ? 1_555 135.9 ? 108 O4 ? B U 1 ? B U 1 ? 1_555 K ? F K . ? A K 104 ? 1_555 O4 ? B U 2 ? B U 2 ? 1_555 61.1 ? 109 O ? J HOH . ? A HOH 228 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 158.8 ? 110 O ? J HOH . ? A HOH 228 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B G 5 ? B G 5 ? 1_555 88.3 ? 111 O6 ? B G 4 ? B G 4 ? 1_555 K ? I K . ? B K 102 ? 1_555 O6 ? B G 5 ? B G 5 ? 1_555 70.5 ? 112 O ? J HOH . ? A HOH 228 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 203 ? 1_555 111.9 ? 113 O6 ? B G 4 ? B G 4 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 203 ? 1_555 79.1 ? 114 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 203 ? 1_555 114.3 ? 115 O ? J HOH . ? A HOH 228 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 216 ? 1_555 80.8 ? 116 O6 ? B G 4 ? B G 4 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 216 ? 1_555 120.0 ? 117 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 216 ? 1_555 162.9 ? 118 O ? K HOH . ? B HOH 203 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 216 ? 1_555 59.1 ? 119 O ? J HOH . ? A HOH 228 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 69.4 ? 120 O6 ? B G 4 ? B G 4 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 101.6 ? 121 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 71.5 ? 122 O ? K HOH . ? B HOH 203 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 173.9 ? 123 O ? K HOH . ? B HOH 216 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 237 ? 1_555 116.0 ? 124 O ? J HOH . ? A HOH 228 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 244 ? 1_555 105.0 ? 125 O6 ? B G 4 ? B G 4 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 244 ? 1_555 84.8 ? 126 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 244 ? 1_555 118.1 ? 127 O ? K HOH . ? B HOH 203 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 244 ? 1_555 115.2 ? 128 O ? K HOH . ? B HOH 216 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 244 ? 1_555 77.7 ? 129 O ? K HOH . ? B HOH 237 ? 1_555 K ? I K . ? B K 102 ? 1_555 O ? K HOH . ? B HOH 244 ? 1_555 59.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 6 'BINDING SITE FOR RESIDUE K A 101' AC2 Software A K 102 ? 7 'BINDING SITE FOR RESIDUE K A 102' AC3 Software A K 103 ? 5 'BINDING SITE FOR RESIDUE K A 103' AC4 Software A K 104 ? 6 'BINDING SITE FOR RESIDUE K A 104' AC5 Software A K 105 ? 7 'BINDING SITE FOR RESIDUE K A 105' AC6 Software B K 101 ? 7 'BINDING SITE FOR RESIDUE K B 101' AC7 Software B K 102 ? 6 'BINDING SITE FOR RESIDUE K B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 U A 7 ? U A 7 . ? 1_555 ? 2 AC1 6 U A 8 ? U A 8 . ? 1_555 ? 3 AC1 6 G B 10 ? G B 10 . ? 1_555 ? 4 AC1 6 A B 11 ? A B 11 . ? 1_555 ? 5 AC1 6 HOH K . ? HOH B 236 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH B 238 . ? 1_555 ? 7 AC2 7 U A 1 ? U A 1 . ? 1_555 ? 8 AC2 7 U A 2 ? U A 2 . ? 1_555 ? 9 AC2 7 HOH J . ? HOH A 222 . ? 1_555 ? 10 AC2 7 G B 15 ? G B 15 . ? 1_555 ? 11 AC2 7 G B 16 ? G B 16 . ? 1_555 ? 12 AC2 7 A B 17 ? A B 17 . ? 1_555 ? 13 AC2 7 HOH K . ? HOH B 241 . ? 1_555 ? 14 AC3 5 U A 9 ? U A 9 . ? 1_555 ? 15 AC3 5 G A 10 ? G A 10 . ? 1_555 ? 16 AC3 5 HOH J . ? HOH A 205 . ? 1_555 ? 17 AC3 5 HOH J . ? HOH A 226 . ? 1_555 ? 18 AC3 5 U B 8 ? U B 8 . ? 1_555 ? 19 AC4 6 G A 15 ? G A 15 . ? 1_555 ? 20 AC4 6 G A 16 ? G A 16 . ? 1_555 ? 21 AC4 6 HOH J . ? HOH A 227 . ? 1_555 ? 22 AC4 6 HOH J . ? HOH A 230 . ? 1_555 ? 23 AC4 6 U B 1 ? U B 1 . ? 1_555 ? 24 AC4 6 U B 2 ? U B 2 . ? 1_555 ? 25 AC5 7 G A 5 ? G A 5 . ? 1_555 ? 26 AC5 7 U A 6 ? U A 6 . ? 1_555 ? 27 AC5 7 HOH J . ? HOH A 207 . ? 1_555 ? 28 AC5 7 HOH J . ? HOH A 208 . ? 1_555 ? 29 AC5 7 HOH J . ? HOH A 217 . ? 1_555 ? 30 AC5 7 U B 12 ? U B 12 . ? 1_555 ? 31 AC5 7 HOH K . ? HOH B 223 . ? 1_555 ? 32 AC6 7 A A 11 ? A A 11 . ? 1_555 ? 33 AC6 7 U A 12 ? U A 12 . ? 1_555 ? 34 AC6 7 HOH J . ? HOH A 225 . ? 1_555 ? 35 AC6 7 HOH J . ? HOH A 228 . ? 1_555 ? 36 AC6 7 G B 5 ? G B 5 . ? 1_555 ? 37 AC6 7 U B 6 ? U B 6 . ? 1_555 ? 38 AC6 7 HOH K . ? HOH B 237 . ? 1_555 ? 39 AC7 6 HOH J . ? HOH A 228 . ? 1_555 ? 40 AC7 6 C B 3 ? C B 3 . ? 1_555 ? 41 AC7 6 G B 4 ? G B 4 . ? 1_555 ? 42 AC7 6 G B 5 ? G B 5 . ? 1_555 ? 43 AC7 6 HOH K . ? HOH B 216 . ? 1_555 ? 44 AC7 6 HOH K . ? HOH B 244 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 G _pdbx_validate_symm_contact.auth_seq_id_1 16 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP1 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 G _pdbx_validate_symm_contact.auth_seq_id_2 10 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_569 _pdbx_validate_symm_contact.dist 2.09 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 7.9401 18.6012 197.5694 0.3460 0.3824 0.3418 0.0613 0.0172 0.0252 0.3824 0.3011 0.4490 -0.1885 0.2627 0.1451 0.2652 -0.0888 -0.1887 0.4445 0.0227 0.0115 -0.5321 -0.4809 -0.0005 'X-RAY DIFFRACTION' 2 ? refined 8.3266 19.0245 221.0466 0.2515 0.6665 0.3757 0.0386 -0.0647 -0.0534 1.5921 1.8292 0.1172 -0.6312 -0.1765 -0.2771 -0.1005 -1.3760 0.1558 0.4705 0.7298 -0.3170 0.1607 0.2577 0.1197 'X-RAY DIFFRACTION' 3 ? refined 4.8206 17.4954 216.7623 0.4595 0.4216 0.4084 0.0553 -0.2056 0.1127 0.6496 0.5457 1.2208 -0.1574 0.3353 0.6532 0.9425 -0.8862 0.0534 -0.4039 0.1946 -0.0507 1.5174 0.1015 0.1050 'X-RAY DIFFRACTION' 4 ? refined 8.8481 16.3737 193.8340 0.3820 0.3566 0.3793 0.0911 -0.0200 0.0800 -0.0022 0.3450 0.3479 -0.0635 0.1271 -0.4082 0.4431 0.1606 -0.3146 -0.3035 -0.0616 0.2154 0.8809 0.3303 0.0007 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 9 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 10 through 17 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 8 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 9 through 17 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4KYY 'double helix' 4KYY 'a-form double helix' 4KYY 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 B A 17 1_555 -0.118 0.000 -0.015 5.328 -13.524 0.974 1 A_U1:A17_B A 1 ? B 17 ? 20 1 1 A U 2 1_555 B G 16 1_555 2.140 -0.586 0.392 -0.175 -18.682 -3.602 2 A_U2:G16_B A 2 ? B 16 ? 28 1 1 A C 3 1_555 B G 15 1_555 0.008 -0.087 0.059 4.037 -14.649 0.040 3 A_C3:G15_B A 3 ? B 15 ? 19 1 1 A G 4 1_555 B C 14 1_555 -0.460 -0.164 0.128 -2.121 -10.704 -0.571 4 A_G4:C14_B A 4 ? B 14 ? 19 1 1 A G 5 1_555 B C 13 1_555 -0.465 -0.142 -0.001 -3.848 -15.163 5.720 5 A_G5:C13_B A 5 ? B 13 ? 19 1 1 A U 6 1_555 B U 12 1_555 -2.329 -1.611 -0.135 4.164 -18.330 -3.222 6 A_U6:U12_B A 6 ? B 12 ? 16 1 1 A U 7 1_555 B A 11 1_555 -0.214 -0.098 0.115 -3.368 -15.412 1.398 7 A_U7:A11_B A 7 ? B 11 ? 20 1 1 A U 8 1_555 B G 10 1_555 2.257 -0.667 0.229 -5.685 -13.995 -5.650 8 A_U8:G10_B A 8 ? B 10 ? 28 1 1 A U 9 1_555 B U 9 1_555 2.581 -1.147 0.052 5.785 -5.312 -28.190 9 A_U9:U9_B A 9 ? B 9 ? ? ? 1 A G 10 1_555 B U 8 1_555 -2.568 -0.744 -0.172 2.399 -6.490 1.344 10 A_G10:U8_B A 10 ? B 8 ? 28 1 1 A A 11 1_555 B U 7 1_555 -0.014 -0.009 0.006 1.024 -14.287 4.671 11 A_A11:U7_B A 11 ? B 7 ? 20 1 1 A U 12 1_555 B U 6 1_555 2.114 -1.677 0.126 -4.488 -11.856 1.879 12 A_U12:U6_B A 12 ? B 6 ? 16 1 1 A C 13 1_555 B G 5 1_555 0.227 -0.249 -0.102 6.971 -19.593 3.382 13 A_C13:G5_B A 13 ? B 5 ? 19 1 1 A C 14 1_555 B G 4 1_555 0.089 -0.370 0.117 5.146 -13.793 -2.232 14 A_C14:G4_B A 14 ? B 4 ? 19 1 1 A G 15 1_555 B C 3 1_555 -0.574 -0.293 0.096 0.392 -13.613 0.897 15 A_G15:C3_B A 15 ? B 3 ? 19 1 1 A G 16 1_555 B U 2 1_555 -1.806 -0.516 -0.043 -6.357 -16.152 -8.309 16 A_G16:U2_B A 16 ? B 2 ? 28 1 1 A A 17 1_555 B U 1 1_555 0.526 0.181 -0.235 -3.066 -22.546 -12.548 17 A_A17:U1_B A 17 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 B A 17 1_555 A U 2 1_555 B G 16 1_555 -0.522 -1.404 3.423 -3.893 3.395 45.678 -2.102 0.320 3.347 4.357 4.996 45.954 1 AA_U1U2:G16A17_BB A 1 ? B 17 ? A 2 ? B 16 ? 1 A U 2 1_555 B G 16 1_555 A C 3 1_555 B G 15 1_555 0.081 -1.979 2.819 5.001 9.598 23.175 -6.524 0.884 1.843 22.391 -11.666 25.546 2 AA_U2C3:G15G16_BB A 2 ? B 16 ? A 3 ? B 15 ? 1 A C 3 1_555 B G 15 1_555 A G 4 1_555 B C 14 1_555 0.623 -2.081 3.313 0.827 12.149 24.620 -7.007 -1.136 2.090 26.518 -1.804 27.425 3 AA_C3G4:C14G15_BB A 3 ? B 15 ? A 4 ? B 14 ? 1 A G 4 1_555 B C 14 1_555 A G 5 1_555 B C 13 1_555 0.313 -1.754 3.288 1.211 4.101 30.433 -4.092 -0.360 3.041 7.764 -2.293 30.725 4 AA_G4G5:C13C14_BB A 4 ? B 14 ? A 5 ? B 13 ? 1 A G 5 1_555 B C 13 1_555 A U 6 1_555 B U 12 1_555 -0.414 -1.775 2.807 -2.011 6.569 25.504 -5.281 0.480 2.311 14.546 4.454 26.398 5 AA_G5U6:U12C13_BB A 5 ? B 13 ? A 6 ? B 12 ? 1 A U 6 1_555 B U 12 1_555 A U 7 1_555 B A 11 1_555 0.030 -1.245 3.534 -3.955 5.163 43.595 -2.174 -0.434 3.357 6.905 5.290 44.054 6 AA_U6U7:A11U12_BB A 6 ? B 12 ? A 7 ? B 11 ? 1 A U 7 1_555 B A 11 1_555 A U 8 1_555 B G 10 1_555 -0.354 -1.019 3.301 0.264 6.494 43.967 -1.941 0.492 3.125 8.617 -0.351 44.422 7 AA_U7U8:G10A11_BB A 7 ? B 11 ? A 8 ? B 10 ? 1 A U 8 1_555 B G 10 1_555 A U 9 1_555 B U 9 1_555 -1.548 -1.607 2.863 2.008 7.689 34.899 -3.516 2.756 2.376 12.619 -3.295 35.765 8 AA_U8U9:U9G10_BB A 8 ? B 10 ? A 9 ? B 9 ? 1 A U 9 1_555 B U 9 1_555 A G 10 1_555 B U 8 1_555 2.678 -1.811 3.303 4.551 10.268 12.667 -12.505 -6.292 2.101 38.133 -16.901 16.914 9 AA_U9G10:U8U9_BB A 9 ? B 9 ? A 10 ? B 8 ? 1 A G 10 1_555 B U 8 1_555 A A 11 1_555 B U 7 1_555 -0.017 -1.578 3.373 -1.950 4.458 41.235 -2.704 -0.185 3.190 6.303 2.758 41.508 10 AA_G10A11:U7U8_BB A 10 ? B 8 ? A 11 ? B 7 ? 1 A A 11 1_555 B U 7 1_555 A U 12 1_555 B U 6 1_555 -0.242 -1.305 3.373 -0.427 4.705 42.092 -2.292 0.290 3.218 6.526 0.593 42.345 11 AA_A11U12:U6U7_BB A 11 ? B 7 ? A 12 ? B 6 ? 1 A U 12 1_555 B U 6 1_555 A C 13 1_555 B G 5 1_555 0.150 -1.502 2.769 6.472 7.005 25.474 -4.595 0.971 2.253 15.223 -14.063 27.173 12 AA_U12C13:G5U6_BB A 12 ? B 6 ? A 13 ? B 5 ? 1 A C 13 1_555 B G 5 1_555 A C 14 1_555 B G 4 1_555 -1.175 -1.889 3.284 -3.462 11.966 25.841 -6.267 1.667 2.333 24.992 7.231 28.641 13 AA_C13C14:G4G5_BB A 13 ? B 5 ? A 14 ? B 4 ? 1 A C 14 1_555 B G 4 1_555 A G 15 1_555 B C 3 1_555 0.445 -1.759 3.170 0.381 16.440 27.021 -5.764 -0.759 1.830 31.729 -0.736 31.552 14 AA_C14G15:C3G4_BB A 14 ? B 4 ? A 15 ? B 3 ? 1 A G 15 1_555 B C 3 1_555 A G 16 1_555 B U 2 1_555 -0.179 -1.654 3.238 -1.659 8.935 30.741 -4.485 0.049 2.670 16.410 3.046 32.025 15 AA_G15G16:U2C3_BB A 15 ? B 3 ? A 16 ? B 2 ? 1 A G 16 1_555 B U 2 1_555 A A 17 1_555 B U 1 1_555 -0.244 -1.078 3.293 4.085 0.545 43.818 -1.491 0.711 3.245 0.729 -5.460 44.002 16 AA_G16A17:U1U2_BB A 16 ? B 2 ? A 17 ? B 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'UUCGG RNA duplex idealized structure' # _atom_sites.entry_id 4KYY _atom_sites.fract_transf_matrix[1][1] 0.022722 _atom_sites.fract_transf_matrix[1][2] 0.013119 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026237 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010909 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_