HEADER IMMUNE SYSTEM/RNA 29-MAY-13 4KZD TITLE CRYSTAL STRUCTURE OF AN RNA APTAMER IN COMPLEX WITH FLUOROPHORE AND TITLE 2 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: BL3-6 FAB ANTIBODY, HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BL3-6 FAB ANTIBODY, LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RNA (84-MER); COMPND 11 CHAIN: R; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: SPINACH RNA APTAMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS G-QUADRUPLEX, FLUORESCENCE, FLUOROPHORE BINDING, IN VITRO, IMMUNE KEYWDS 2 SYSTEM-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HUANG,N.B.SUSLOV,N.LI,Y.KOLDOBSKAYA,P.A.RICE,J.A.PICCIRILLI REVDAT 6 20-SEP-23 4KZD 1 HETSYN REVDAT 5 29-JUL-20 4KZD 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 20-MAY-15 4KZD 1 REMARK REVDAT 3 30-JUL-14 4KZD 1 JRNL REVDAT 2 09-JUL-14 4KZD 1 JRNL REVDAT 1 18-JUN-14 4KZD 0 JRNL AUTH H.HUANG,N.B.SUSLOV,N.S.LI,S.A.SHELKE,M.E.EVANS, JRNL AUTH 2 Y.KOLDOBSKAYA,P.A.RICE,J.A.PICCIRILLI JRNL TITL A G-QUADRUPLEX-CONTAINING RNA ACTIVATES FLUORESCENCE IN A JRNL TITL 2 GFP-LIKE FLUOROPHORE. JRNL REF NAT.CHEM.BIOL. V. 10 686 2014 JRNL REFN ISSN 1552-4450 JRNL PMID 24952597 JRNL DOI 10.1038/NCHEMBIO.1561 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 52457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6978 - 5.2656 0.97 3656 145 0.1696 0.1806 REMARK 3 2 5.2656 - 4.1803 0.97 3608 143 0.1373 0.1518 REMARK 3 3 4.1803 - 3.6521 0.98 3597 142 0.1521 0.1734 REMARK 3 4 3.6521 - 3.3183 0.96 3566 141 0.1654 0.2309 REMARK 3 5 3.3183 - 3.0805 0.98 3584 143 0.1817 0.2284 REMARK 3 6 3.0805 - 2.8989 0.99 3601 143 0.1931 0.2346 REMARK 3 7 2.8989 - 2.7537 0.98 3594 142 0.2035 0.2413 REMARK 3 8 2.7537 - 2.6339 0.98 3614 144 0.2045 0.2409 REMARK 3 9 2.6339 - 2.5325 0.99 3655 144 0.2043 0.2519 REMARK 3 10 2.5325 - 2.4451 0.99 3611 143 0.2123 0.2502 REMARK 3 11 2.4451 - 2.3687 0.99 3614 143 0.2244 0.2770 REMARK 3 12 2.3687 - 2.3010 0.98 3595 144 0.2399 0.2871 REMARK 3 13 2.3010 - 2.2404 0.98 3573 141 0.2662 0.2912 REMARK 3 14 2.2404 - 2.1857 0.99 3589 142 0.2834 0.3520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5483 REMARK 3 ANGLE : 1.168 7864 REMARK 3 CHIRALITY : 0.068 946 REMARK 3 PLANARITY : 0.006 675 REMARK 3 DIHEDRAL : 13.123 2236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : RAPD REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 46.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: RAPD REMARK 200 STARTING MODEL: PDB ENTRY 3IVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMATE, 20% PEG 3,350, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.21250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.80100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.21250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.80100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, R, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -35.12638 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 88.49340 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 ILE H 2 REMARK 465 SER H 3 REMARK 465 ASP H 229 REMARK 465 LYS H 230 REMARK 465 THR H 231 REMARK 465 HIS H 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GDP R 1 C3' - O3' - P ANGL. DEV. = -20.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 57 -39.47 72.29 REMARK 500 ALA H 95 166.89 176.86 REMARK 500 SER H 108 18.93 -146.70 REMARK 500 LYS H 141 170.61 -57.55 REMARK 500 PHE H 158 138.47 -171.23 REMARK 500 SER L 31 -120.59 47.65 REMARK 500 ALA L 52 -42.16 77.34 REMARK 500 ALA L 85 -179.47 -179.03 REMARK 500 LYS L 127 4.82 -66.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K R 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G R 22 O6 REMARK 620 2 G R 23 O6 90.3 REMARK 620 3 G R 26 O6 62.2 106.1 REMARK 620 4 G R 27 O6 126.9 90.2 66.8 REMARK 620 5 G R 54 O6 107.1 82.4 165.7 125.6 REMARK 620 6 G R 57 O6 60.9 142.5 82.5 125.7 83.9 REMARK 620 7 G R 59 O6 130.3 135.9 108.0 78.5 70.9 69.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH R 201 O REMARK 620 2 HOH R 202 O 172.9 REMARK 620 3 HOH R 203 O 88.4 86.5 REMARK 620 4 HOH R 204 O 87.8 88.3 101.2 REMARK 620 5 HOH R 205 O 92.2 92.5 87.3 171.5 REMARK 620 6 HOH R 206 O 92.3 93.4 173.1 85.7 85.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IVK RELATED DB: PDB REMARK 900 BL3-6 FAB ANTIBODY GRAFT REMARK 900 RELATED ID: 4KZE RELATED DB: PDB DBREF 4KZD H 1 232 PDB 4KZD 4KZD 1 232 DBREF 4KZD L 1 215 PDB 4KZD 4KZD 1 215 DBREF 4KZD R 1 84 PDB 4KZD 4KZD 1 84 SEQRES 1 H 232 GLU ILE SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 H 232 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 H 232 ALA SER GLY PHE TYR ILE SER TYR SER SER ILE HIS TRP SEQRES 4 H 232 VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SEQRES 5 H 232 SER ILE SER PRO TYR SER GLY SER THR TYR TYR ALA ASP SEQRES 6 H 232 SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER SEQRES 7 H 232 LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG ALA SEQRES 8 H 232 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG GLN GLY TYR SEQRES 9 H 232 ARG ARG ARG SER GLY ARG GLY PHE ASP TYR TRP GLY GLN SEQRES 10 H 232 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 232 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 232 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 232 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 232 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 232 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 232 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 232 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 232 LYS VAL GLU PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 L 215 SER ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER SEQRES 2 L 215 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 L 215 SER GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SEQRES 5 L 215 SER SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 L 215 SER ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER SEQRES 7 L 215 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 215 SER TYR SER PHE PRO SER THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 R 84 GDP G A C G C G A C C G A A SEQRES 2 R 84 A U G G U G A A G G A C G SEQRES 3 R 84 G G U C C A G U G C G A A SEQRES 4 R 84 A C A C G C A C U G U U G SEQRES 5 R 84 A G U A G A G U G U G A G SEQRES 6 R 84 C U C C G U A A C U G G U SEQRES 7 R 84 C G C G U C MODRES 4KZD GDP R 1 G GUANOSINE-5'-DIPHOSPHATE HET GDP R 1 28 HET GLC A 1 11 HET FRU A 2 12 HET K R 101 1 HET MG R 102 1 HET 1TU R 103 18 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM 1TU 4-(3,5-DIFLUORO-4-HYDROXYBENZYL)-1,2-DIMETHYL-1H- HETNAM 2 1TU IMIDAZOL-5-OL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 GLC C6 H12 O6 FORMUL 4 FRU C6 H12 O6 FORMUL 5 K K 1+ FORMUL 6 MG MG 2+ FORMUL 7 1TU C12 H12 F2 N2 O2 FORMUL 8 HOH *466(H2 O) HELIX 1 1 TYR H 31 SER H 35 5 5 HELIX 2 2 THR H 77 LYS H 79 5 3 HELIX 3 3 ARG H 90 THR H 94 5 5 HELIX 4 4 TYR H 104 GLY H 109 1 6 HELIX 5 5 SER H 168 ALA H 170 5 3 HELIX 6 6 PRO H 197 LEU H 201 5 5 HELIX 7 7 LYS H 213 ASN H 216 5 4 HELIX 8 8 GLN L 80 PHE L 84 5 5 HELIX 9 9 SER L 122 LYS L 127 1 6 HELIX 10 10 LYS L 184 LYS L 189 1 6 SHEET 1 A 4 GLN H 6 SER H 10 0 SHEET 2 A 4 LEU H 21 SER H 28 -1 O SER H 28 N GLN H 6 SHEET 3 A 4 THR H 81 MET H 86 -1 O MET H 86 N LEU H 21 SHEET 4 A 4 PHE H 71 ASP H 76 -1 N ASP H 76 O THR H 81 SHEET 1 B 6 GLY H 13 VAL H 15 0 SHEET 2 B 6 THR H 119 VAL H 123 1 O THR H 122 N VAL H 15 SHEET 3 B 6 ALA H 95 GLN H 102 -1 N ALA H 95 O VAL H 121 SHEET 4 B 6 ILE H 37 GLN H 42 -1 N VAL H 40 O TYR H 98 SHEET 5 B 6 LEU H 48 ILE H 54 -1 O GLU H 49 N ARG H 41 SHEET 6 B 6 THR H 61 TYR H 63 -1 O TYR H 62 N SER H 53 SHEET 1 C 4 GLY H 13 VAL H 15 0 SHEET 2 C 4 THR H 119 VAL H 123 1 O THR H 122 N VAL H 15 SHEET 3 C 4 ALA H 95 GLN H 102 -1 N ALA H 95 O VAL H 121 SHEET 4 C 4 PHE H 112 TRP H 115 -1 O TYR H 114 N ARG H 101 SHEET 1 D 4 SER H 132 LEU H 136 0 SHEET 2 D 4 ALA H 148 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 D 4 TYR H 188 VAL H 196 -1 O LEU H 190 N VAL H 154 SHEET 4 D 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 E 4 SER H 132 LEU H 136 0 SHEET 2 E 4 ALA H 148 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 E 4 TYR H 188 VAL H 196 -1 O LEU H 190 N VAL H 154 SHEET 4 E 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 F 3 THR H 163 TRP H 166 0 SHEET 2 F 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 F 3 THR H 217 LYS H 222 -1 O THR H 217 N HIS H 212 SHEET 1 G 4 MET L 5 SER L 8 0 SHEET 2 G 4 VAL L 20 ALA L 26 -1 O ARG L 25 N THR L 6 SHEET 3 G 4 ASP L 71 ILE L 76 -1 O PHE L 72 N CYS L 24 SHEET 4 G 4 PHE L 63 SER L 68 -1 N SER L 68 O ASP L 71 SHEET 1 H 6 SER L 11 ALA L 14 0 SHEET 2 H 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 H 6 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 H 6 VAL L 34 GLN L 39 -1 N GLN L 39 O THR L 86 SHEET 5 H 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 H 6 SER L 54 LEU L 55 -1 O SER L 54 N TYR L 50 SHEET 1 I 4 SER L 11 ALA L 14 0 SHEET 2 I 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 I 4 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 I 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 J 4 SER L 115 PHE L 119 0 SHEET 2 J 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 J 4 TYR L 174 SER L 183 -1 O LEU L 176 N LEU L 137 SHEET 4 J 4 SER L 160 VAL L 164 -1 N SER L 163 O SER L 177 SHEET 1 K 4 ALA L 154 LEU L 155 0 SHEET 2 K 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 K 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 K 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 25 CYS H 99 1555 1555 2.05 SSBOND 2 CYS H 152 CYS H 208 1555 1555 2.04 SSBOND 3 CYS H 228 CYS L 215 1555 1555 2.04 SSBOND 4 CYS L 24 CYS L 89 1555 1555 2.02 SSBOND 5 CYS L 135 CYS L 195 1555 1555 2.03 LINK O3' GDP R 1 P G R 2 1555 1555 1.60 LINK C1 GLC A 1 O2 FRU A 2 1555 1555 1.42 LINK O6 G R 22 K K R 101 1555 1555 2.92 LINK O6 G R 23 K K R 101 1555 1555 2.65 LINK O6 G R 26 K K R 101 1555 1555 3.25 LINK O6 G R 27 K K R 101 1555 1555 2.70 LINK O6 G R 54 K K R 101 1555 1555 2.72 LINK O6 G R 57 K K R 101 1555 1555 3.38 LINK O6 G R 59 K K R 101 1555 1555 2.72 LINK MG MG R 102 O HOH R 201 1555 1555 2.19 LINK MG MG R 102 O HOH R 202 1555 1555 2.19 LINK MG MG R 102 O HOH R 203 1555 1555 2.21 LINK MG MG R 102 O HOH R 204 1555 1555 2.19 LINK MG MG R 102 O HOH R 205 1555 1555 2.19 LINK MG MG R 102 O HOH R 206 1555 1555 2.19 CISPEP 1 PHE H 158 PRO H 159 0 -5.43 CISPEP 2 GLU H 160 PRO H 161 0 -0.25 CISPEP 3 SER L 8 PRO L 9 0 -4.02 CISPEP 4 PHE L 95 PRO L 96 0 -2.51 CISPEP 5 TYR L 141 PRO L 142 0 3.32 CRYST1 148.425 79.602 95.210 90.00 111.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006737 0.000000 0.002674 0.00000 SCALE2 0.000000 0.012562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011300 0.00000