data_4KZN # _entry.id 4KZN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KZN pdb_00004kzn 10.2210/pdb4kzn/pdb RCSB RCSB079995 ? ? WWPDB D_1000079995 ? ? # _pdbx_database_status.entry_id 4KZN _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-05-30 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Liaw, Y.C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structural Basis for the Bivalent Glycosylated Human VEGF-A121 and VEGF-A165 in recruiment of Receptor and Co-receptor' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shen, S.T.' 1 ? primary 'Huang, P.T.' 2 ? primary 'Shuau, Y.S.' 3 ? primary 'Lee, Y.M.' 4 ? primary 'Chen, Y.J.' 5 ? primary 'Liaw, Y.C.' 6 ? primary 'Lou, K.L.' 7 ? # _cell.length_a 87.573 _cell.length_b 32.014 _cell.length_c 42.981 _cell.angle_alpha 90.000 _cell.angle_beta 92.990 _cell.angle_gamma 90.000 _cell.entry_id 4KZN _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4KZN _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vascular endothelial growth factor A' 12289.062 1 ? ? 'receptor binding domain, UNP residues 39-135' ? 2 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 1056.964 1 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 63 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VEGF-A, Vascular permeability factor, VPF' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SHHHHHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKP HQGQHIGEMSFLQHNKCECRPKKD ; _entity_poly.pdbx_seq_one_letter_code_can ;SHHHHHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKP HQGQHIGEMSFLQHNKCECRPKKD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLU n 1 9 VAL n 1 10 VAL n 1 11 LYS n 1 12 PHE n 1 13 MET n 1 14 ASP n 1 15 VAL n 1 16 TYR n 1 17 GLN n 1 18 ARG n 1 19 SER n 1 20 TYR n 1 21 CYS n 1 22 HIS n 1 23 PRO n 1 24 ILE n 1 25 GLU n 1 26 THR n 1 27 LEU n 1 28 VAL n 1 29 ASP n 1 30 ILE n 1 31 PHE n 1 32 GLN n 1 33 GLU n 1 34 TYR n 1 35 PRO n 1 36 ASP n 1 37 GLU n 1 38 ILE n 1 39 GLU n 1 40 TYR n 1 41 ILE n 1 42 PHE n 1 43 LYS n 1 44 PRO n 1 45 SER n 1 46 CYS n 1 47 VAL n 1 48 PRO n 1 49 LEU n 1 50 MET n 1 51 ARG n 1 52 CYS n 1 53 GLY n 1 54 GLY n 1 55 CYS n 1 56 CYS n 1 57 ASN n 1 58 ASP n 1 59 GLU n 1 60 GLY n 1 61 LEU n 1 62 GLU n 1 63 CYS n 1 64 VAL n 1 65 PRO n 1 66 THR n 1 67 GLU n 1 68 GLU n 1 69 SER n 1 70 ASN n 1 71 ILE n 1 72 THR n 1 73 MET n 1 74 GLN n 1 75 ILE n 1 76 MET n 1 77 ARG n 1 78 ILE n 1 79 LYS n 1 80 PRO n 1 81 HIS n 1 82 GLN n 1 83 GLY n 1 84 GLN n 1 85 HIS n 1 86 ILE n 1 87 GLY n 1 88 GLU n 1 89 MET n 1 90 SER n 1 91 PHE n 1 92 LEU n 1 93 GLN n 1 94 HIS n 1 95 ASN n 1 96 LYS n 1 97 CYS n 1 98 GLU n 1 99 CYS n 1 100 ARG n 1 101 PRO n 1 102 LYS n 1 103 LYS n 1 104 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VEGFA, VEGF' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7227 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain S2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMT/V5-His _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VEGFA_HUMAN _struct_ref.pdbx_db_accession P15692 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIG EMSFLQHNKCECRPKKD ; _struct_ref.pdbx_align_begin 39 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4KZN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15692 _struct_ref_seq.db_align_beg 39 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 135 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4KZN SER A 1 ? UNP P15692 ? ? 'expression tag' 6 1 1 4KZN HIS A 2 ? UNP P15692 ? ? 'expression tag' 7 2 1 4KZN HIS A 3 ? UNP P15692 ? ? 'expression tag' 8 3 1 4KZN HIS A 4 ? UNP P15692 ? ? 'expression tag' 9 4 1 4KZN HIS A 5 ? UNP P15692 ? ? 'expression tag' 10 5 1 4KZN HIS A 6 ? UNP P15692 ? ? 'expression tag' 11 6 1 4KZN HIS A 7 ? UNP P15692 ? ? 'expression tag' 12 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4KZN _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 54.2 _exptl_crystal.density_Matthews 2.7 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pdbx_details 'Li2SO4, PEG200, Tris buffer, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2009-02-04 monochromator 2 CCD 'ADSC QUANTUM 315' 2008-12-23 mirror # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' GRAPHITE 1 M x-ray 2 'SINGLE WAVELENGTH' GRAPHITE 1 M x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'NSRRC BEAMLINE BL13B1' 1.0 ? NSRRC BL13B1 2 SYNCHROTRON 'NSRRC BEAMLINE BL13C1' 1.0 ? NSRRC BL13C1 # _reflns.entry_id 4KZN _reflns.d_resolution_high 1.710 _reflns.d_resolution_low 30.000 _reflns.number_obs 12694 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_netI_over_sigmaI 17.700 _reflns.pdbx_chi_squared 1.163 _reflns.pdbx_redundancy 3.500 _reflns.percent_possible_obs 97.400 _reflns.B_iso_Wilson_estimate 19.7817489644 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.710 1.770 ? ? ? ? 0.271 ? ? 1.004 3.200 ? ? ? 1223 ? ? ? ? 96.400 ? ? 1 1,2 1.770 1.840 ? ? ? ? 0.225 ? ? 1.049 3.600 ? ? ? 1252 ? ? ? ? 97.500 ? ? 2 1,2 1.840 1.930 ? ? ? ? 0.153 ? ? 1.146 3.700 ? ? ? 1275 ? ? ? ? 97.800 ? ? 3 1,2 1.930 2.030 ? ? ? ? 0.118 ? ? 1.207 3.700 ? ? ? 1268 ? ? ? ? 97.700 ? ? 4 1,2 2.030 2.150 ? ? ? ? 0.088 ? ? 1.214 3.700 ? ? ? 1256 ? ? ? ? 97.900 ? ? 5 1,2 2.150 2.320 ? ? ? ? 0.068 ? ? 1.223 3.600 ? ? ? 1290 ? ? ? ? 97.800 ? ? 6 1,2 2.320 2.550 ? ? ? ? 0.060 ? ? 1.132 3.600 ? ? ? 1268 ? ? ? ? 98.300 ? ? 7 1,2 2.550 2.920 ? ? ? ? 0.053 ? ? 1.214 3.600 ? ? ? 1288 ? ? ? ? 98.000 ? ? 8 1,2 2.920 3.680 ? ? ? ? 0.037 ? ? 1.131 3.400 ? ? ? 1260 ? ? ? ? 97.100 ? ? 9 1,2 3.680 30.000 ? ? ? ? 0.026 ? ? 1.287 3.300 ? ? ? 1314 ? ? ? ? 95.800 ? ? 10 1,2 # _refine.ls_d_res_low 24.8338014786 _refine.ls_d_res_high 1.7114 _refine.pdbx_ls_sigma_F 1.38318867874 _refine.ls_percent_reflns_obs 97.0691766146 _refine.ls_number_reflns_obs 12685 _refine.ls_number_reflns_R_free 1275 _refine.ls_R_factor_obs 0.182783276428 _refine.ls_R_factor_R_work 0.178919069691 _refine.ls_R_factor_R_free 0.218229685236 _refine.ls_percent_reflns_R_free 10.051241624 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_shrinkage_radii 0.9 _refine.overall_SU_ML 0.159239421364 _refine.pdbx_overall_phase_error 22.7181138622 _refine.B_iso_mean 5.51618585435 _refine.entry_id 4KZN _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 12685 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'pdb 1vpf' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model isotropic _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details 'MATTHEWS COEFFICIENT is calculated from both complete sequence and PDB.' _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_ion_probe_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 770 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 86 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 919 _refine_hist.d_res_high 1.7114 _refine_hist.d_res_low 24.8338014786 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.dev_ideal_target _refine_ls_restr.pdbx_refine_id f_bond_d 891 0.0117018840049 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1203 1.55912244699 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 141 0.0983048194363 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 145 0.00608210773817 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 380 32.619799158 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 1.7114 1.7799 1211 0.224161388965 93.8633193863 0.285420315725 135 . . . . . . . 'X-RAY DIFFRACTION' 1.7799 1.8609 1266 0.187196016367 97.4982626824 0.212609360967 137 . . . . . . . 'X-RAY DIFFRACTION' 1.8609 1.9589 1247 0.169523741619 97.1988795518 0.210661719918 141 . . . . . . . 'X-RAY DIFFRACTION' 1.9589 2.0816 1269 0.170973256516 97.8546712803 0.221062232026 145 . . . . . . . 'X-RAY DIFFRACTION' 2.0816 2.2423 1266 0.168277444266 97.8457261987 0.218604290113 142 . . . . . . . 'X-RAY DIFFRACTION' 2.2423 2.4677 1281 0.174789667283 98.0756013746 0.22433126165 146 . . . . . . . 'X-RAY DIFFRACTION' 2.4677 2.8244 1284 0.179130687603 98.2167352538 0.233270092393 148 . . . . . . . 'X-RAY DIFFRACTION' 2.8244 3.5567 1286 0.188157423318 97.1937029432 0.20471447533 134 . . . . . . . 'X-RAY DIFFRACTION' 3.5567 24.8364 1300 0.174810001796 95.8913187541 0.212432509622 147 . . . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4KZN _struct.title 'crystal structure of human VEGF-A receptor binding domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KZN _struct_keywords.text 'VEGF A, PDGF family, receptor binding, HORMONE' _struct_keywords.pdbx_keywords HORMONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is a dimer. Half biological unit in the asym.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 11 ? TYR A 20 ? LYS A 16 TYR A 25 1 ? 10 HELX_P HELX_P2 2 ILE A 30 ? TYR A 34 ? ILE A 35 TYR A 39 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 26 A CYS 68 1_555 ? ? ? ? ? ? ? 2.070 ? ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 51 A CYS 60 2_555 ? ? ? ? ? ? ? 2.118 ? ? disulf3 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 57 A CYS 102 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 61 A CYS 104 1_555 ? ? ? ? ? ? ? 2.058 ? ? covale1 covale one ? A ASN 70 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 75 B NAG 1 1_555 ? ? ? ? ? ? ? 1.420 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale3 covale both ? B NAG . O6 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 6 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale5 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale6 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 5 1_555 ? ? ? ? ? ? ? 1.439 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 43 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 48 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 44 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 49 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.38 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 22 ? ASP A 29 ? HIS A 27 ASP A 34 A 2 CYS A 46 ? GLY A 53 ? CYS A 51 GLY A 58 B 1 ILE A 41 ? LYS A 43 ? ILE A 46 LYS A 48 B 2 LEU A 61 ? LYS A 79 ? LEU A 66 LYS A 84 B 3 GLY A 83 ? PRO A 101 ? GLY A 88 PRO A 106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 24 ? N ILE A 29 O ARG A 51 ? O ARG A 56 B 1 2 N ILE A 41 ? N ILE A 46 O ILE A 78 ? O ILE A 83 B 2 3 N ARG A 77 ? N ARG A 82 O HIS A 85 ? O HIS A 90 # _atom_sites.entry_id 4KZN _atom_sites.fract_transf_matrix[1][1] 0.011419 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000596 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031236 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023298 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 1.23737 29.19336 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 6 ? ? ? A . n A 1 2 HIS 2 7 ? ? ? A . n A 1 3 HIS 3 8 ? ? ? A . n A 1 4 HIS 4 9 ? ? ? A . n A 1 5 HIS 5 10 ? ? ? A . n A 1 6 HIS 6 11 ? ? ? A . n A 1 7 HIS 7 12 ? ? ? A . n A 1 8 GLU 8 13 13 GLU GLU A . n A 1 9 VAL 9 14 14 VAL VAL A . n A 1 10 VAL 10 15 15 VAL VAL A . n A 1 11 LYS 11 16 16 LYS LYS A . n A 1 12 PHE 12 17 17 PHE PHE A . n A 1 13 MET 13 18 18 MET MET A . n A 1 14 ASP 14 19 19 ASP ASP A . n A 1 15 VAL 15 20 20 VAL VAL A . n A 1 16 TYR 16 21 21 TYR TYR A . n A 1 17 GLN 17 22 22 GLN GLN A . n A 1 18 ARG 18 23 23 ARG ARG A . n A 1 19 SER 19 24 24 SER SER A . n A 1 20 TYR 20 25 25 TYR TYR A . n A 1 21 CYS 21 26 26 CYS CYS A . n A 1 22 HIS 22 27 27 HIS HIS A . n A 1 23 PRO 23 28 28 PRO PRO A . n A 1 24 ILE 24 29 29 ILE ILE A . n A 1 25 GLU 25 30 30 GLU GLU A . n A 1 26 THR 26 31 31 THR THR A . n A 1 27 LEU 27 32 32 LEU LEU A . n A 1 28 VAL 28 33 33 VAL VAL A . n A 1 29 ASP 29 34 34 ASP ASP A . n A 1 30 ILE 30 35 35 ILE ILE A . n A 1 31 PHE 31 36 36 PHE PHE A . n A 1 32 GLN 32 37 37 GLN GLN A . n A 1 33 GLU 33 38 38 GLU GLU A . n A 1 34 TYR 34 39 39 TYR TYR A . n A 1 35 PRO 35 40 40 PRO PRO A . n A 1 36 ASP 36 41 41 ASP ASP A . n A 1 37 GLU 37 42 42 GLU GLU A . n A 1 38 ILE 38 43 43 ILE ILE A . n A 1 39 GLU 39 44 44 GLU GLU A . n A 1 40 TYR 40 45 45 TYR TYR A . n A 1 41 ILE 41 46 46 ILE ILE A . n A 1 42 PHE 42 47 47 PHE PHE A . n A 1 43 LYS 43 48 48 LYS LYS A . n A 1 44 PRO 44 49 49 PRO PRO A . n A 1 45 SER 45 50 50 SER SER A . n A 1 46 CYS 46 51 51 CYS CYS A . n A 1 47 VAL 47 52 52 VAL VAL A . n A 1 48 PRO 48 53 53 PRO PRO A . n A 1 49 LEU 49 54 54 LEU LEU A . n A 1 50 MET 50 55 55 MET MET A . n A 1 51 ARG 51 56 56 ARG ARG A . n A 1 52 CYS 52 57 57 CYS CYS A . n A 1 53 GLY 53 58 58 GLY GLY A . n A 1 54 GLY 54 59 59 GLY GLY A . n A 1 55 CYS 55 60 60 CYS CYS A . n A 1 56 CYS 56 61 61 CYS CYS A . n A 1 57 ASN 57 62 62 ASN ASN A . n A 1 58 ASP 58 63 63 ASP ASP A . n A 1 59 GLU 59 64 64 GLU GLU A . n A 1 60 GLY 60 65 65 GLY GLY A . n A 1 61 LEU 61 66 66 LEU LEU A . n A 1 62 GLU 62 67 67 GLU GLU A . n A 1 63 CYS 63 68 68 CYS CYS A . n A 1 64 VAL 64 69 69 VAL VAL A . n A 1 65 PRO 65 70 70 PRO PRO A . n A 1 66 THR 66 71 71 THR THR A . n A 1 67 GLU 67 72 72 GLU GLU A . n A 1 68 GLU 68 73 73 GLU GLU A . n A 1 69 SER 69 74 74 SER SER A . n A 1 70 ASN 70 75 75 ASN ASN A . n A 1 71 ILE 71 76 76 ILE ILE A . n A 1 72 THR 72 77 77 THR THR A . n A 1 73 MET 73 78 78 MET MET A . n A 1 74 GLN 74 79 79 GLN GLN A . n A 1 75 ILE 75 80 80 ILE ILE A . n A 1 76 MET 76 81 81 MET MET A . n A 1 77 ARG 77 82 82 ARG ARG A . n A 1 78 ILE 78 83 83 ILE ILE A . n A 1 79 LYS 79 84 84 LYS LYS A . n A 1 80 PRO 80 85 85 PRO PRO A . n A 1 81 HIS 81 86 86 HIS HIS A . n A 1 82 GLN 82 87 87 GLN GLN A . n A 1 83 GLY 83 88 88 GLY GLY A . n A 1 84 GLN 84 89 89 GLN GLN A . n A 1 85 HIS 85 90 90 HIS HIS A . n A 1 86 ILE 86 91 91 ILE ILE A . n A 1 87 GLY 87 92 92 GLY GLY A . n A 1 88 GLU 88 93 93 GLU GLU A . n A 1 89 MET 89 94 94 MET MET A . n A 1 90 SER 90 95 95 SER SER A . n A 1 91 PHE 91 96 96 PHE PHE A . n A 1 92 LEU 92 97 97 LEU LEU A . n A 1 93 GLN 93 98 98 GLN GLN A . n A 1 94 HIS 94 99 99 HIS HIS A . n A 1 95 ASN 95 100 100 ASN ASN A . n A 1 96 LYS 96 101 101 LYS LYS A . n A 1 97 CYS 97 102 102 CYS CYS A . n A 1 98 GLU 98 103 103 GLU GLU A . n A 1 99 CYS 99 104 104 CYS CYS A . n A 1 100 ARG 100 105 105 ARG ARG A . n A 1 101 PRO 101 106 106 PRO PRO A . n A 1 102 LYS 102 107 107 LYS LYS A . n A 1 103 LYS 103 108 ? ? ? A . n A 1 104 ASP 104 109 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGE 1 207 1 PGE PGE A . D 4 SO4 1 208 1 SO4 SO4 A . E 5 HOH 1 301 1 HOH HOH A . E 5 HOH 2 302 2 HOH HOH A . E 5 HOH 3 303 3 HOH HOH A . E 5 HOH 4 304 4 HOH HOH A . E 5 HOH 5 305 5 HOH HOH A . E 5 HOH 6 306 6 HOH HOH A . E 5 HOH 7 307 7 HOH HOH A . E 5 HOH 8 308 8 HOH HOH A . E 5 HOH 9 309 9 HOH HOH A . E 5 HOH 10 310 10 HOH HOH A . E 5 HOH 11 311 11 HOH HOH A . E 5 HOH 12 312 12 HOH HOH A . E 5 HOH 13 313 13 HOH HOH A . E 5 HOH 14 314 14 HOH HOH A . E 5 HOH 15 315 15 HOH HOH A . E 5 HOH 16 316 16 HOH HOH A . E 5 HOH 17 317 17 HOH HOH A . E 5 HOH 18 318 18 HOH HOH A . E 5 HOH 19 319 19 HOH HOH A . E 5 HOH 20 320 20 HOH HOH A . E 5 HOH 21 321 21 HOH HOH A . E 5 HOH 22 322 23 HOH HOH A . E 5 HOH 23 323 24 HOH HOH A . E 5 HOH 24 324 25 HOH HOH A . E 5 HOH 25 325 26 HOH HOH A . E 5 HOH 26 326 27 HOH HOH A . E 5 HOH 27 327 28 HOH HOH A . E 5 HOH 28 328 29 HOH HOH A . E 5 HOH 29 329 30 HOH HOH A . E 5 HOH 30 330 31 HOH HOH A . E 5 HOH 31 331 32 HOH HOH A . E 5 HOH 32 332 33 HOH HOH A . E 5 HOH 33 333 34 HOH HOH A . E 5 HOH 34 334 35 HOH HOH A . E 5 HOH 35 335 36 HOH HOH A . E 5 HOH 36 336 37 HOH HOH A . E 5 HOH 37 337 38 HOH HOH A . E 5 HOH 38 338 39 HOH HOH A . E 5 HOH 39 339 40 HOH HOH A . E 5 HOH 40 340 41 HOH HOH A . E 5 HOH 41 341 42 HOH HOH A . E 5 HOH 42 342 43 HOH HOH A . E 5 HOH 43 343 44 HOH HOH A . E 5 HOH 44 344 45 HOH HOH A . E 5 HOH 45 345 46 HOH HOH A . E 5 HOH 46 346 47 HOH HOH A . E 5 HOH 47 347 48 HOH HOH A . E 5 HOH 48 348 49 HOH HOH A . E 5 HOH 49 349 50 HOH HOH A . E 5 HOH 50 350 51 HOH HOH A . E 5 HOH 51 351 52 HOH HOH A . E 5 HOH 52 352 53 HOH HOH A . E 5 HOH 53 353 54 HOH HOH A . E 5 HOH 54 354 55 HOH HOH A . E 5 HOH 55 355 56 HOH HOH A . E 5 HOH 56 356 57 HOH HOH A . E 5 HOH 57 357 58 HOH HOH A . E 5 HOH 58 358 60 HOH HOH A . E 5 HOH 59 359 61 HOH HOH A . E 5 HOH 60 360 63 HOH HOH A . E 5 HOH 61 361 65 HOH HOH A . E 5 HOH 62 362 66 HOH HOH A . E 5 HOH 63 363 67 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 70 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 75 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5690 ? 1 MORE -20 ? 1 'SSA (A^2)' 12930 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-04 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' atom_site 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' struct_asym 15 3 'Structure model' struct_conn 16 3 'Structure model' struct_ref_seq_dif 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen 19 4 'Structure model' chem_comp 20 4 'Structure model' chem_comp_atom 21 4 'Structure model' chem_comp_bond 22 4 'Structure model' database_2 23 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.pdbx_role' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_chem_comp.pdbx_synonyms' 33 4 'Structure model' '_database_2.pdbx_DOI' 34 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -5.62740541872 -8.32925757354 0.0906865831187 0.182558509393 0.127017255424 0.166342436206 0.0233004719676 0.0243304532162 -0.00279739757722 7.15721618121 0.600258639556 4.02551536502 1.18793403216 3.7686198841 0.226148946317 0.0172720147214 -0.0605715697749 0.0399825755467 -0.0203662969681 -0.0362686222322 -0.0432702975427 0.148328653 0.0662122915342 0.0226297632744 'X-RAY DIFFRACTION' 2 ? refined 5.92251044567 -2.84964276085 10.090001549 0.189091179617 0.165604715074 0.170963973445 -0.0135769873791 -0.00705390412042 -0.0193965298153 6.12898117435 0.336249511023 0.95989339231 -0.739616507382 -0.847712474125 -0.0261540257439 0.0202455179545 -0.175897568465 0.418181223113 0.00748574804669 -0.0222171493001 -0.043592737203 -0.158084254297 0.0459323265202 0.0321432868093 'X-RAY DIFFRACTION' 3 ? refined 6.80820862886 -4.62873043144 12.4166485487 0.196589665005 0.19178413382 0.112389085088 0.0174141295069 0.00127347027918 -0.0432871370961 6.12070084559 1.01764322476 0.467794585063 0.574607268239 0.290825633964 -0.49290747458 0.179113224777 -0.326952441177 -0.322708492248 -0.000606189059136 -0.0849050577616 -0.0862430747332 -0.0797833043266 0.00434717658487 -0.103935203936 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id 1 1 ? '(chain A and resid 13:38)' 'X-RAY DIFFRACTION' ? ? ? ? ? ? ? ? 2 2 ? '(chain A and resid 39:84)' 'X-RAY DIFFRACTION' ? ? ? ? ? ? ? ? 3 3 ? '(chain A and resid 85:107)' 'X-RAY DIFFRACTION' ? ? ? ? ? ? ? ? # _pdbx_phasing_MR.entry_id 4KZN _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 24.830 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 24.830 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.4.0 'Tue Dec 6 04:17:27 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 RESOLVE 2.15 20-Mar-2010 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.11 'August 3, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 8 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 26 ? ? -33.76 120.86 2 1 ASP A 63 ? ? -160.57 114.23 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 6 ? A SER 1 2 1 Y 1 A HIS 7 ? A HIS 2 3 1 Y 1 A HIS 8 ? A HIS 3 4 1 Y 1 A HIS 9 ? A HIS 4 5 1 Y 1 A HIS 10 ? A HIS 5 6 1 Y 1 A HIS 11 ? A HIS 6 7 1 Y 1 A HIS 12 ? A HIS 7 8 1 Y 1 A LYS 108 ? A LYS 103 9 1 Y 1 A ASP 109 ? A ASP 104 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 ASP N N N N 45 ASP CA C N S 46 ASP C C N N 47 ASP O O N N 48 ASP CB C N N 49 ASP CG C N N 50 ASP OD1 O N N 51 ASP OD2 O N N 52 ASP OXT O N N 53 ASP H H N N 54 ASP H2 H N N 55 ASP HA H N N 56 ASP HB2 H N N 57 ASP HB3 H N N 58 ASP HD2 H N N 59 ASP HXT H N N 60 BMA C1 C N R 61 BMA C2 C N S 62 BMA C3 C N S 63 BMA C4 C N S 64 BMA C5 C N R 65 BMA C6 C N N 66 BMA O1 O N N 67 BMA O2 O N N 68 BMA O3 O N N 69 BMA O4 O N N 70 BMA O5 O N N 71 BMA O6 O N N 72 BMA H1 H N N 73 BMA H2 H N N 74 BMA H3 H N N 75 BMA H4 H N N 76 BMA H5 H N N 77 BMA H61 H N N 78 BMA H62 H N N 79 BMA HO1 H N N 80 BMA HO2 H N N 81 BMA HO3 H N N 82 BMA HO4 H N N 83 BMA HO6 H N N 84 CYS N N N N 85 CYS CA C N R 86 CYS C C N N 87 CYS O O N N 88 CYS CB C N N 89 CYS SG S N N 90 CYS OXT O N N 91 CYS H H N N 92 CYS H2 H N N 93 CYS HA H N N 94 CYS HB2 H N N 95 CYS HB3 H N N 96 CYS HG H N N 97 CYS HXT H N N 98 FUC C1 C N R 99 FUC C2 C N S 100 FUC C3 C N R 101 FUC C4 C N S 102 FUC C5 C N S 103 FUC C6 C N N 104 FUC O1 O N N 105 FUC O2 O N N 106 FUC O3 O N N 107 FUC O4 O N N 108 FUC O5 O N N 109 FUC H1 H N N 110 FUC H2 H N N 111 FUC H3 H N N 112 FUC H4 H N N 113 FUC H5 H N N 114 FUC H61 H N N 115 FUC H62 H N N 116 FUC H63 H N N 117 FUC HO1 H N N 118 FUC HO2 H N N 119 FUC HO3 H N N 120 FUC HO4 H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 HIS N N N N 171 HIS CA C N S 172 HIS C C N N 173 HIS O O N N 174 HIS CB C N N 175 HIS CG C Y N 176 HIS ND1 N Y N 177 HIS CD2 C Y N 178 HIS CE1 C Y N 179 HIS NE2 N Y N 180 HIS OXT O N N 181 HIS H H N N 182 HIS H2 H N N 183 HIS HA H N N 184 HIS HB2 H N N 185 HIS HB3 H N N 186 HIS HD1 H N N 187 HIS HD2 H N N 188 HIS HE1 H N N 189 HIS HE2 H N N 190 HIS HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MAN C1 C N S 264 MAN C2 C N S 265 MAN C3 C N S 266 MAN C4 C N S 267 MAN C5 C N R 268 MAN C6 C N N 269 MAN O1 O N N 270 MAN O2 O N N 271 MAN O3 O N N 272 MAN O4 O N N 273 MAN O5 O N N 274 MAN O6 O N N 275 MAN H1 H N N 276 MAN H2 H N N 277 MAN H3 H N N 278 MAN H4 H N N 279 MAN H5 H N N 280 MAN H61 H N N 281 MAN H62 H N N 282 MAN HO1 H N N 283 MAN HO2 H N N 284 MAN HO3 H N N 285 MAN HO4 H N N 286 MAN HO6 H N N 287 MET N N N N 288 MET CA C N S 289 MET C C N N 290 MET O O N N 291 MET CB C N N 292 MET CG C N N 293 MET SD S N N 294 MET CE C N N 295 MET OXT O N N 296 MET H H N N 297 MET H2 H N N 298 MET HA H N N 299 MET HB2 H N N 300 MET HB3 H N N 301 MET HG2 H N N 302 MET HG3 H N N 303 MET HE1 H N N 304 MET HE2 H N N 305 MET HE3 H N N 306 MET HXT H N N 307 NAG C1 C N R 308 NAG C2 C N R 309 NAG C3 C N R 310 NAG C4 C N S 311 NAG C5 C N R 312 NAG C6 C N N 313 NAG C7 C N N 314 NAG C8 C N N 315 NAG N2 N N N 316 NAG O1 O N N 317 NAG O3 O N N 318 NAG O4 O N N 319 NAG O5 O N N 320 NAG O6 O N N 321 NAG O7 O N N 322 NAG H1 H N N 323 NAG H2 H N N 324 NAG H3 H N N 325 NAG H4 H N N 326 NAG H5 H N N 327 NAG H61 H N N 328 NAG H62 H N N 329 NAG H81 H N N 330 NAG H82 H N N 331 NAG H83 H N N 332 NAG HN2 H N N 333 NAG HO1 H N N 334 NAG HO3 H N N 335 NAG HO4 H N N 336 NAG HO6 H N N 337 PGE C1 C N N 338 PGE O1 O N N 339 PGE C2 C N N 340 PGE O2 O N N 341 PGE C3 C N N 342 PGE C4 C N N 343 PGE O4 O N N 344 PGE C6 C N N 345 PGE C5 C N N 346 PGE O3 O N N 347 PGE H1 H N N 348 PGE H12 H N N 349 PGE HO1 H N N 350 PGE H2 H N N 351 PGE H22 H N N 352 PGE H3 H N N 353 PGE H32 H N N 354 PGE H4 H N N 355 PGE H42 H N N 356 PGE HO4 H N N 357 PGE H6 H N N 358 PGE H62 H N N 359 PGE H5 H N N 360 PGE H52 H N N 361 PHE N N N N 362 PHE CA C N S 363 PHE C C N N 364 PHE O O N N 365 PHE CB C N N 366 PHE CG C Y N 367 PHE CD1 C Y N 368 PHE CD2 C Y N 369 PHE CE1 C Y N 370 PHE CE2 C Y N 371 PHE CZ C Y N 372 PHE OXT O N N 373 PHE H H N N 374 PHE H2 H N N 375 PHE HA H N N 376 PHE HB2 H N N 377 PHE HB3 H N N 378 PHE HD1 H N N 379 PHE HD2 H N N 380 PHE HE1 H N N 381 PHE HE2 H N N 382 PHE HZ H N N 383 PHE HXT H N N 384 PRO N N N N 385 PRO CA C N S 386 PRO C C N N 387 PRO O O N N 388 PRO CB C N N 389 PRO CG C N N 390 PRO CD C N N 391 PRO OXT O N N 392 PRO H H N N 393 PRO HA H N N 394 PRO HB2 H N N 395 PRO HB3 H N N 396 PRO HG2 H N N 397 PRO HG3 H N N 398 PRO HD2 H N N 399 PRO HD3 H N N 400 PRO HXT H N N 401 SER N N N N 402 SER CA C N S 403 SER C C N N 404 SER O O N N 405 SER CB C N N 406 SER OG O N N 407 SER OXT O N N 408 SER H H N N 409 SER H2 H N N 410 SER HA H N N 411 SER HB2 H N N 412 SER HB3 H N N 413 SER HG H N N 414 SER HXT H N N 415 SO4 S S N N 416 SO4 O1 O N N 417 SO4 O2 O N N 418 SO4 O3 O N N 419 SO4 O4 O N N 420 THR N N N N 421 THR CA C N S 422 THR C C N N 423 THR O O N N 424 THR CB C N R 425 THR OG1 O N N 426 THR CG2 C N N 427 THR OXT O N N 428 THR H H N N 429 THR H2 H N N 430 THR HA H N N 431 THR HB H N N 432 THR HG1 H N N 433 THR HG21 H N N 434 THR HG22 H N N 435 THR HG23 H N N 436 THR HXT H N N 437 TYR N N N N 438 TYR CA C N S 439 TYR C C N N 440 TYR O O N N 441 TYR CB C N N 442 TYR CG C Y N 443 TYR CD1 C Y N 444 TYR CD2 C Y N 445 TYR CE1 C Y N 446 TYR CE2 C Y N 447 TYR CZ C Y N 448 TYR OH O N N 449 TYR OXT O N N 450 TYR H H N N 451 TYR H2 H N N 452 TYR HA H N N 453 TYR HB2 H N N 454 TYR HB3 H N N 455 TYR HD1 H N N 456 TYR HD2 H N N 457 TYR HE1 H N N 458 TYR HE2 H N N 459 TYR HH H N N 460 TYR HXT H N N 461 VAL N N N N 462 VAL CA C N S 463 VAL C C N N 464 VAL O O N N 465 VAL CB C N N 466 VAL CG1 C N N 467 VAL CG2 C N N 468 VAL OXT O N N 469 VAL H H N N 470 VAL H2 H N N 471 VAL HA H N N 472 VAL HB H N N 473 VAL HG11 H N N 474 VAL HG12 H N N 475 VAL HG13 H N N 476 VAL HG21 H N N 477 VAL HG22 H N N 478 VAL HG23 H N N 479 VAL HXT H N N 480 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 ASP N CA sing N N 43 ASP N H sing N N 44 ASP N H2 sing N N 45 ASP CA C sing N N 46 ASP CA CB sing N N 47 ASP CA HA sing N N 48 ASP C O doub N N 49 ASP C OXT sing N N 50 ASP CB CG sing N N 51 ASP CB HB2 sing N N 52 ASP CB HB3 sing N N 53 ASP CG OD1 doub N N 54 ASP CG OD2 sing N N 55 ASP OD2 HD2 sing N N 56 ASP OXT HXT sing N N 57 BMA C1 C2 sing N N 58 BMA C1 O1 sing N N 59 BMA C1 O5 sing N N 60 BMA C1 H1 sing N N 61 BMA C2 C3 sing N N 62 BMA C2 O2 sing N N 63 BMA C2 H2 sing N N 64 BMA C3 C4 sing N N 65 BMA C3 O3 sing N N 66 BMA C3 H3 sing N N 67 BMA C4 C5 sing N N 68 BMA C4 O4 sing N N 69 BMA C4 H4 sing N N 70 BMA C5 C6 sing N N 71 BMA C5 O5 sing N N 72 BMA C5 H5 sing N N 73 BMA C6 O6 sing N N 74 BMA C6 H61 sing N N 75 BMA C6 H62 sing N N 76 BMA O1 HO1 sing N N 77 BMA O2 HO2 sing N N 78 BMA O3 HO3 sing N N 79 BMA O4 HO4 sing N N 80 BMA O6 HO6 sing N N 81 CYS N CA sing N N 82 CYS N H sing N N 83 CYS N H2 sing N N 84 CYS CA C sing N N 85 CYS CA CB sing N N 86 CYS CA HA sing N N 87 CYS C O doub N N 88 CYS C OXT sing N N 89 CYS CB SG sing N N 90 CYS CB HB2 sing N N 91 CYS CB HB3 sing N N 92 CYS SG HG sing N N 93 CYS OXT HXT sing N N 94 FUC C1 C2 sing N N 95 FUC C1 O1 sing N N 96 FUC C1 O5 sing N N 97 FUC C1 H1 sing N N 98 FUC C2 C3 sing N N 99 FUC C2 O2 sing N N 100 FUC C2 H2 sing N N 101 FUC C3 C4 sing N N 102 FUC C3 O3 sing N N 103 FUC C3 H3 sing N N 104 FUC C4 C5 sing N N 105 FUC C4 O4 sing N N 106 FUC C4 H4 sing N N 107 FUC C5 C6 sing N N 108 FUC C5 O5 sing N N 109 FUC C5 H5 sing N N 110 FUC C6 H61 sing N N 111 FUC C6 H62 sing N N 112 FUC C6 H63 sing N N 113 FUC O1 HO1 sing N N 114 FUC O2 HO2 sing N N 115 FUC O3 HO3 sing N N 116 FUC O4 HO4 sing N N 117 GLN N CA sing N N 118 GLN N H sing N N 119 GLN N H2 sing N N 120 GLN CA C sing N N 121 GLN CA CB sing N N 122 GLN CA HA sing N N 123 GLN C O doub N N 124 GLN C OXT sing N N 125 GLN CB CG sing N N 126 GLN CB HB2 sing N N 127 GLN CB HB3 sing N N 128 GLN CG CD sing N N 129 GLN CG HG2 sing N N 130 GLN CG HG3 sing N N 131 GLN CD OE1 doub N N 132 GLN CD NE2 sing N N 133 GLN NE2 HE21 sing N N 134 GLN NE2 HE22 sing N N 135 GLN OXT HXT sing N N 136 GLU N CA sing N N 137 GLU N H sing N N 138 GLU N H2 sing N N 139 GLU CA C sing N N 140 GLU CA CB sing N N 141 GLU CA HA sing N N 142 GLU C O doub N N 143 GLU C OXT sing N N 144 GLU CB CG sing N N 145 GLU CB HB2 sing N N 146 GLU CB HB3 sing N N 147 GLU CG CD sing N N 148 GLU CG HG2 sing N N 149 GLU CG HG3 sing N N 150 GLU CD OE1 doub N N 151 GLU CD OE2 sing N N 152 GLU OE2 HE2 sing N N 153 GLU OXT HXT sing N N 154 GLY N CA sing N N 155 GLY N H sing N N 156 GLY N H2 sing N N 157 GLY CA C sing N N 158 GLY CA HA2 sing N N 159 GLY CA HA3 sing N N 160 GLY C O doub N N 161 GLY C OXT sing N N 162 GLY OXT HXT sing N N 163 HIS N CA sing N N 164 HIS N H sing N N 165 HIS N H2 sing N N 166 HIS CA C sing N N 167 HIS CA CB sing N N 168 HIS CA HA sing N N 169 HIS C O doub N N 170 HIS C OXT sing N N 171 HIS CB CG sing N N 172 HIS CB HB2 sing N N 173 HIS CB HB3 sing N N 174 HIS CG ND1 sing Y N 175 HIS CG CD2 doub Y N 176 HIS ND1 CE1 doub Y N 177 HIS ND1 HD1 sing N N 178 HIS CD2 NE2 sing Y N 179 HIS CD2 HD2 sing N N 180 HIS CE1 NE2 sing Y N 181 HIS CE1 HE1 sing N N 182 HIS NE2 HE2 sing N N 183 HIS OXT HXT sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 ILE N CA sing N N 187 ILE N H sing N N 188 ILE N H2 sing N N 189 ILE CA C sing N N 190 ILE CA CB sing N N 191 ILE CA HA sing N N 192 ILE C O doub N N 193 ILE C OXT sing N N 194 ILE CB CG1 sing N N 195 ILE CB CG2 sing N N 196 ILE CB HB sing N N 197 ILE CG1 CD1 sing N N 198 ILE CG1 HG12 sing N N 199 ILE CG1 HG13 sing N N 200 ILE CG2 HG21 sing N N 201 ILE CG2 HG22 sing N N 202 ILE CG2 HG23 sing N N 203 ILE CD1 HD11 sing N N 204 ILE CD1 HD12 sing N N 205 ILE CD1 HD13 sing N N 206 ILE OXT HXT sing N N 207 LEU N CA sing N N 208 LEU N H sing N N 209 LEU N H2 sing N N 210 LEU CA C sing N N 211 LEU CA CB sing N N 212 LEU CA HA sing N N 213 LEU C O doub N N 214 LEU C OXT sing N N 215 LEU CB CG sing N N 216 LEU CB HB2 sing N N 217 LEU CB HB3 sing N N 218 LEU CG CD1 sing N N 219 LEU CG CD2 sing N N 220 LEU CG HG sing N N 221 LEU CD1 HD11 sing N N 222 LEU CD1 HD12 sing N N 223 LEU CD1 HD13 sing N N 224 LEU CD2 HD21 sing N N 225 LEU CD2 HD22 sing N N 226 LEU CD2 HD23 sing N N 227 LEU OXT HXT sing N N 228 LYS N CA sing N N 229 LYS N H sing N N 230 LYS N H2 sing N N 231 LYS CA C sing N N 232 LYS CA CB sing N N 233 LYS CA HA sing N N 234 LYS C O doub N N 235 LYS C OXT sing N N 236 LYS CB CG sing N N 237 LYS CB HB2 sing N N 238 LYS CB HB3 sing N N 239 LYS CG CD sing N N 240 LYS CG HG2 sing N N 241 LYS CG HG3 sing N N 242 LYS CD CE sing N N 243 LYS CD HD2 sing N N 244 LYS CD HD3 sing N N 245 LYS CE NZ sing N N 246 LYS CE HE2 sing N N 247 LYS CE HE3 sing N N 248 LYS NZ HZ1 sing N N 249 LYS NZ HZ2 sing N N 250 LYS NZ HZ3 sing N N 251 LYS OXT HXT sing N N 252 MAN C1 C2 sing N N 253 MAN C1 O1 sing N N 254 MAN C1 O5 sing N N 255 MAN C1 H1 sing N N 256 MAN C2 C3 sing N N 257 MAN C2 O2 sing N N 258 MAN C2 H2 sing N N 259 MAN C3 C4 sing N N 260 MAN C3 O3 sing N N 261 MAN C3 H3 sing N N 262 MAN C4 C5 sing N N 263 MAN C4 O4 sing N N 264 MAN C4 H4 sing N N 265 MAN C5 C6 sing N N 266 MAN C5 O5 sing N N 267 MAN C5 H5 sing N N 268 MAN C6 O6 sing N N 269 MAN C6 H61 sing N N 270 MAN C6 H62 sing N N 271 MAN O1 HO1 sing N N 272 MAN O2 HO2 sing N N 273 MAN O3 HO3 sing N N 274 MAN O4 HO4 sing N N 275 MAN O6 HO6 sing N N 276 MET N CA sing N N 277 MET N H sing N N 278 MET N H2 sing N N 279 MET CA C sing N N 280 MET CA CB sing N N 281 MET CA HA sing N N 282 MET C O doub N N 283 MET C OXT sing N N 284 MET CB CG sing N N 285 MET CB HB2 sing N N 286 MET CB HB3 sing N N 287 MET CG SD sing N N 288 MET CG HG2 sing N N 289 MET CG HG3 sing N N 290 MET SD CE sing N N 291 MET CE HE1 sing N N 292 MET CE HE2 sing N N 293 MET CE HE3 sing N N 294 MET OXT HXT sing N N 295 NAG C1 C2 sing N N 296 NAG C1 O1 sing N N 297 NAG C1 O5 sing N N 298 NAG C1 H1 sing N N 299 NAG C2 C3 sing N N 300 NAG C2 N2 sing N N 301 NAG C2 H2 sing N N 302 NAG C3 C4 sing N N 303 NAG C3 O3 sing N N 304 NAG C3 H3 sing N N 305 NAG C4 C5 sing N N 306 NAG C4 O4 sing N N 307 NAG C4 H4 sing N N 308 NAG C5 C6 sing N N 309 NAG C5 O5 sing N N 310 NAG C5 H5 sing N N 311 NAG C6 O6 sing N N 312 NAG C6 H61 sing N N 313 NAG C6 H62 sing N N 314 NAG C7 C8 sing N N 315 NAG C7 N2 sing N N 316 NAG C7 O7 doub N N 317 NAG C8 H81 sing N N 318 NAG C8 H82 sing N N 319 NAG C8 H83 sing N N 320 NAG N2 HN2 sing N N 321 NAG O1 HO1 sing N N 322 NAG O3 HO3 sing N N 323 NAG O4 HO4 sing N N 324 NAG O6 HO6 sing N N 325 PGE C1 O1 sing N N 326 PGE C1 C2 sing N N 327 PGE C1 H1 sing N N 328 PGE C1 H12 sing N N 329 PGE O1 HO1 sing N N 330 PGE C2 O2 sing N N 331 PGE C2 H2 sing N N 332 PGE C2 H22 sing N N 333 PGE O2 C3 sing N N 334 PGE C3 C4 sing N N 335 PGE C3 H3 sing N N 336 PGE C3 H32 sing N N 337 PGE C4 O3 sing N N 338 PGE C4 H4 sing N N 339 PGE C4 H42 sing N N 340 PGE O4 C6 sing N N 341 PGE O4 HO4 sing N N 342 PGE C6 C5 sing N N 343 PGE C6 H6 sing N N 344 PGE C6 H62 sing N N 345 PGE C5 O3 sing N N 346 PGE C5 H5 sing N N 347 PGE C5 H52 sing N N 348 PHE N CA sing N N 349 PHE N H sing N N 350 PHE N H2 sing N N 351 PHE CA C sing N N 352 PHE CA CB sing N N 353 PHE CA HA sing N N 354 PHE C O doub N N 355 PHE C OXT sing N N 356 PHE CB CG sing N N 357 PHE CB HB2 sing N N 358 PHE CB HB3 sing N N 359 PHE CG CD1 doub Y N 360 PHE CG CD2 sing Y N 361 PHE CD1 CE1 sing Y N 362 PHE CD1 HD1 sing N N 363 PHE CD2 CE2 doub Y N 364 PHE CD2 HD2 sing N N 365 PHE CE1 CZ doub Y N 366 PHE CE1 HE1 sing N N 367 PHE CE2 CZ sing Y N 368 PHE CE2 HE2 sing N N 369 PHE CZ HZ sing N N 370 PHE OXT HXT sing N N 371 PRO N CA sing N N 372 PRO N CD sing N N 373 PRO N H sing N N 374 PRO CA C sing N N 375 PRO CA CB sing N N 376 PRO CA HA sing N N 377 PRO C O doub N N 378 PRO C OXT sing N N 379 PRO CB CG sing N N 380 PRO CB HB2 sing N N 381 PRO CB HB3 sing N N 382 PRO CG CD sing N N 383 PRO CG HG2 sing N N 384 PRO CG HG3 sing N N 385 PRO CD HD2 sing N N 386 PRO CD HD3 sing N N 387 PRO OXT HXT sing N N 388 SER N CA sing N N 389 SER N H sing N N 390 SER N H2 sing N N 391 SER CA C sing N N 392 SER CA CB sing N N 393 SER CA HA sing N N 394 SER C O doub N N 395 SER C OXT sing N N 396 SER CB OG sing N N 397 SER CB HB2 sing N N 398 SER CB HB3 sing N N 399 SER OG HG sing N N 400 SER OXT HXT sing N N 401 SO4 S O1 doub N N 402 SO4 S O2 doub N N 403 SO4 S O3 sing N N 404 SO4 S O4 sing N N 405 THR N CA sing N N 406 THR N H sing N N 407 THR N H2 sing N N 408 THR CA C sing N N 409 THR CA CB sing N N 410 THR CA HA sing N N 411 THR C O doub N N 412 THR C OXT sing N N 413 THR CB OG1 sing N N 414 THR CB CG2 sing N N 415 THR CB HB sing N N 416 THR OG1 HG1 sing N N 417 THR CG2 HG21 sing N N 418 THR CG2 HG22 sing N N 419 THR CG2 HG23 sing N N 420 THR OXT HXT sing N N 421 TYR N CA sing N N 422 TYR N H sing N N 423 TYR N H2 sing N N 424 TYR CA C sing N N 425 TYR CA CB sing N N 426 TYR CA HA sing N N 427 TYR C O doub N N 428 TYR C OXT sing N N 429 TYR CB CG sing N N 430 TYR CB HB2 sing N N 431 TYR CB HB3 sing N N 432 TYR CG CD1 doub Y N 433 TYR CG CD2 sing Y N 434 TYR CD1 CE1 sing Y N 435 TYR CD1 HD1 sing N N 436 TYR CD2 CE2 doub Y N 437 TYR CD2 HD2 sing N N 438 TYR CE1 CZ doub Y N 439 TYR CE1 HE1 sing N N 440 TYR CE2 CZ sing Y N 441 TYR CE2 HE2 sing N N 442 TYR CZ OH sing N N 443 TYR OH HH sing N N 444 TYR OXT HXT sing N N 445 VAL N CA sing N N 446 VAL N H sing N N 447 VAL N H2 sing N N 448 VAL CA C sing N N 449 VAL CA CB sing N N 450 VAL CA HA sing N N 451 VAL C O doub N N 452 VAL C OXT sing N N 453 VAL CB CG1 sing N N 454 VAL CB CG2 sing N N 455 VAL CB HB sing N N 456 VAL CG1 HG11 sing N N 457 VAL CG1 HG12 sing N N 458 VAL CG1 HG13 sing N N 459 VAL CG2 HG21 sing N N 460 VAL CG2 HG22 sing N N 461 VAL CG2 HG23 sing N N 462 VAL OXT HXT sing N N 463 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 B NAG 1 n B 2 NAG 2 B NAG 2 B NAG 2 n B 2 BMA 3 B BMA 3 B BMA 4 n B 2 MAN 4 B MAN 4 B MAN 5 n B 2 MAN 5 B MAN 5 B MAN 6 n B 2 FUC 6 B FUC 6 B FUC 3 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-3-4/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}[(6+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 MAN C1 O1 3 BMA O6 HO6 sing ? 5 2 6 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 MAN 5 n 2 FUC 6 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'TRIETHYLENE GLYCOL' PGE 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1VPF _pdbx_initial_refinement_model.details 'pdb 1vpf' #