HEADER OXIDOREDUCTASE 30-MAY-13 4KZO TITLE CRYSTAL STRUCTURE ANALYSIS OF HUMAN IDH1 MUTANTS IN COMPLEX WITH NADP+ TITLE 2 AND CA2+/ALPHA-KETOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: IDH, CYTOSOLIC NADP-ISOCITRATE DEHYDROGENASE, IDP, NADP(+)- COMPND 5 SPECIFIC ICDH, OXALOSUCCINATE DECARBOXYLASE; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDH1, PICD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET41A KEYWDS CYTOSOLIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.O.CONCHA,A.M.SMALLWOOD REVDAT 2 21-DEC-22 4KZO 1 REMARK SEQADV LINK REVDAT 1 17-JUL-13 4KZO 0 JRNL AUTH A.R.RENDINA,B.PIETRAK,A.SMALLWOOD,H.ZHAO,H.QI,C.QUINN, JRNL AUTH 2 N.D.ADAMS,N.CONCHA,C.DURAISWAMI,S.H.THRALL,S.SWEITZER, JRNL AUTH 3 B.SCHWARTZ JRNL TITL MUTANT IDH1 ENHANCES THE PRODUCTION OF 2-HYDROXYGLUTARATE JRNL TITL 2 DUE TO ITS KINETIC MECHANISM. JRNL REF BIOCHEMISTRY V. 52 4563 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23731180 JRNL DOI 10.1021/BI400514K REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 77583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7760 - 6.6874 1.00 2815 161 0.1651 0.1941 REMARK 3 2 6.6874 - 5.3105 1.00 2718 135 0.1756 0.1922 REMARK 3 3 5.3105 - 4.6400 1.00 2675 147 0.1392 0.1698 REMARK 3 4 4.6400 - 4.2161 1.00 2679 154 0.1306 0.1536 REMARK 3 5 4.2161 - 3.9141 1.00 2646 143 0.1465 0.1938 REMARK 3 6 3.9141 - 3.6834 1.00 2664 130 0.1622 0.2181 REMARK 3 7 3.6834 - 3.4990 1.00 2643 141 0.1679 0.1891 REMARK 3 8 3.4990 - 3.3467 1.00 2634 146 0.1828 0.2426 REMARK 3 9 3.3467 - 3.2179 1.00 2619 143 0.1941 0.2677 REMARK 3 10 3.2179 - 3.1069 1.00 2640 143 0.1966 0.2591 REMARK 3 11 3.1069 - 3.0098 1.00 2630 138 0.2043 0.2432 REMARK 3 12 3.0098 - 2.9238 1.00 2626 146 0.2111 0.2790 REMARK 3 13 2.9238 - 2.8468 1.00 2624 138 0.2084 0.2610 REMARK 3 14 2.8468 - 2.7774 1.00 2630 137 0.1987 0.2454 REMARK 3 15 2.7774 - 2.7142 1.00 2653 133 0.2032 0.2626 REMARK 3 16 2.7142 - 2.6565 1.00 2607 137 0.2018 0.2774 REMARK 3 17 2.6565 - 2.6033 1.00 2614 148 0.2048 0.2661 REMARK 3 18 2.6033 - 2.5542 1.00 2603 145 0.2048 0.2803 REMARK 3 19 2.5542 - 2.5086 1.00 2611 145 0.2008 0.2524 REMARK 3 20 2.5086 - 2.4661 1.00 2611 121 0.2038 0.2805 REMARK 3 21 2.4661 - 2.4263 1.00 2630 134 0.2200 0.2479 REMARK 3 22 2.4263 - 2.3890 1.00 2657 121 0.2149 0.2615 REMARK 3 23 2.3890 - 2.3539 1.00 2579 143 0.2251 0.3278 REMARK 3 24 2.3539 - 2.3207 1.00 2618 137 0.2135 0.2433 REMARK 3 25 2.3207 - 2.2893 1.00 2607 150 0.2190 0.2873 REMARK 3 26 2.2893 - 2.2596 1.00 2632 129 0.2285 0.2949 REMARK 3 27 2.2596 - 2.2314 1.00 2601 143 0.2281 0.2893 REMARK 3 28 2.2314 - 2.2040 0.92 2407 122 0.2348 0.2562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 10130 REMARK 3 ANGLE : 0.830 13702 REMARK 3 CHIRALITY : 0.074 1479 REMARK 3 PLANARITY : 0.005 1746 REMARK 3 DIHEDRAL : 16.393 3750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 3:416 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6064 42.6351 -18.7545 REMARK 3 T TENSOR REMARK 3 T11: 0.3035 T22: 0.2322 REMARK 3 T33: 0.1964 T12: -0.1324 REMARK 3 T13: 0.0023 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6412 L22: 1.0410 REMARK 3 L33: 1.0163 L12: -0.2118 REMARK 3 L13: 0.1178 L23: -0.3289 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.1083 S13: 0.0258 REMARK 3 S21: -0.0852 S22: -0.0964 S23: -0.1417 REMARK 3 S31: -0.2986 S32: 0.2901 S33: 0.0743 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 3:414 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6999 38.6656 11.9398 REMARK 3 T TENSOR REMARK 3 T11: 0.4149 T22: 0.2937 REMARK 3 T33: 0.2116 T12: -0.0847 REMARK 3 T13: 0.0273 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.7640 L22: 1.3073 REMARK 3 L33: 1.2222 L12: -0.1683 REMARK 3 L13: 0.1088 L23: 0.4414 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: -0.3118 S13: -0.0276 REMARK 3 S21: 0.4284 S22: -0.0081 S23: -0.0109 REMARK 3 S31: -0.1188 S32: 0.1150 S33: 0.0391 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C AND RESID 4:413 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1654 1.5049 -42.8623 REMARK 3 T TENSOR REMARK 3 T11: 0.2338 T22: 0.4085 REMARK 3 T33: 0.4002 T12: -0.1049 REMARK 3 T13: 0.0824 T23: -0.2165 REMARK 3 L TENSOR REMARK 3 L11: 1.4432 L22: 0.7013 REMARK 3 L33: 1.2689 L12: -0.0209 REMARK 3 L13: -0.3518 L23: 0.2088 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.3947 S13: 0.0252 REMARK 3 S21: 0.2749 S22: -0.2751 S23: 0.2516 REMARK 3 S31: 0.0131 S32: 0.0053 S33: 0.0671 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77612 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.204 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% PEG MME 2000, 100MM MES, PH REMARK 280 6.9, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.99500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.99500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.18000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 137.29900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.18000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 137.29900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.99500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.18000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 137.29900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.99500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.18000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 137.29900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -115.99000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 625 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 415 REMARK 465 LEU B 416 REMARK 465 GLU B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 LEU C 414 REMARK 465 SER C 415 REMARK 465 LEU C 416 REMARK 465 GLU C 417 REMARK 465 HIS C 418 REMARK 465 HIS C 419 REMARK 465 HIS C 420 REMARK 465 HIS C 421 REMARK 465 HIS C 422 REMARK 465 HIS C 423 REMARK 465 HIS C 424 REMARK 465 HIS C 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 GLN B 411 CG CD OE1 NE2 REMARK 470 LYS B 413 CG CD CE NZ REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 LYS C 65 CG CD CE NZ REMARK 470 LYS C 345 CG CD CE NZ REMARK 470 LYS C 350 CG CD CE NZ REMARK 470 LYS C 381 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 29 OD1 ASP C 399 2.09 REMARK 500 N LYS B 3 O PRO B 33 2.17 REMARK 500 O HOH C 671 O HOH C 678 2.18 REMARK 500 OE1 GLU A 247 O HOH A 738 2.18 REMARK 500 OE1 GLN C 185 O HOH C 673 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 620 O HOH C 692 4554 2.00 REMARK 500 O HOH C 666 O HOH C 678 4554 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 4 -61.02 -129.08 REMARK 500 GLU A 17 -135.31 58.86 REMARK 500 LEU A 30 -55.40 -121.18 REMARK 500 ASN A 68 -3.96 77.67 REMARK 500 ASP A 137 -138.09 52.54 REMARK 500 GLU B 17 -135.29 54.13 REMARK 500 LEU B 30 -57.22 -122.47 REMARK 500 ASP B 54 -1.83 74.65 REMARK 500 ASN B 68 -5.96 73.73 REMARK 500 ASP B 137 -135.23 59.43 REMARK 500 GLN B 234 -60.83 -129.35 REMARK 500 LYS B 301 -56.90 -127.70 REMARK 500 GLU C 17 -134.01 54.09 REMARK 500 ASP C 54 -1.59 75.45 REMARK 500 ASN C 68 -6.85 83.01 REMARK 500 ASP C 137 -133.97 56.18 REMARK 500 LYS C 321 -169.78 -73.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 262 GLY C 263 -122.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 252 OD2 REMARK 620 2 ASP B 275 OD1 68.4 REMARK 620 3 ASP B 275 O 95.1 71.2 REMARK 620 4 ASP B 279 OD2 72.8 128.5 80.1 REMARK 620 5 AKG B 503 O2 126.2 69.4 101.4 160.2 REMARK 620 6 AKG B 503 O5 71.7 68.6 139.8 127.7 62.8 REMARK 620 7 HOH B 601 O 155.8 126.3 75.2 83.6 77.9 129.6 REMARK 620 8 HOH B 602 O 100.2 137.7 150.8 80.9 89.4 69.2 80.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 275 OD1 REMARK 620 2 ASP A 275 O 68.9 REMARK 620 3 ASP A 279 OD2 129.9 76.6 REMARK 620 4 AKG A 503 O2 70.4 101.0 153.6 REMARK 620 5 AKG A 503 O5 72.0 141.0 133.0 64.0 REMARK 620 6 HOH A 601 O 143.2 147.4 79.8 90.4 71.4 REMARK 620 7 HOH A 602 O 121.1 75.4 81.6 72.4 126.1 79.2 REMARK 620 8 ASP B 252 OD2 71.2 98.3 79.3 126.7 69.9 99.1 160.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 275 OD1 REMARK 620 2 ASP C 275 O 69.5 REMARK 620 3 ASP C 279 OD2 128.7 81.6 REMARK 620 4 AKG C 503 O2 74.2 103.1 155.8 REMARK 620 5 AKG C 503 O5 71.6 140.8 128.6 60.7 REMARK 620 6 HOH C 601 O 138.6 151.8 76.0 91.0 67.4 REMARK 620 7 HOH C 602 O 133.6 79.3 76.9 80.6 126.8 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG C 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L03 RELATED DB: PDB REMARK 900 RELATED ID: 4L04 RELATED DB: PDB REMARK 900 RELATED ID: 4L06 RELATED DB: PDB DBREF 4KZO A 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 4KZO B 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 4KZO C 1 414 UNP O75874 IDHC_HUMAN 1 414 SEQADV 4KZO HIS A 132 UNP O75874 ARG 132 VARIANT SEQADV 4KZO SER A 415 UNP O75874 EXPRESSION TAG SEQADV 4KZO LEU A 416 UNP O75874 EXPRESSION TAG SEQADV 4KZO GLU A 417 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS A 418 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS A 419 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS A 420 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS A 421 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS A 422 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS A 423 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS A 424 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS A 425 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 132 UNP O75874 ARG 132 VARIANT SEQADV 4KZO SER B 415 UNP O75874 EXPRESSION TAG SEQADV 4KZO LEU B 416 UNP O75874 EXPRESSION TAG SEQADV 4KZO GLU B 417 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 418 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 419 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 420 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 421 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 422 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 423 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 424 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS B 425 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 132 UNP O75874 ARG 132 VARIANT SEQADV 4KZO SER C 415 UNP O75874 EXPRESSION TAG SEQADV 4KZO LEU C 416 UNP O75874 EXPRESSION TAG SEQADV 4KZO GLU C 417 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 418 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 419 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 420 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 421 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 422 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 423 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 424 UNP O75874 EXPRESSION TAG SEQADV 4KZO HIS C 425 UNP O75874 EXPRESSION TAG SEQRES 1 A 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 A 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 A 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 A 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 A 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 A 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 A 425 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 A 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 A 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 A 425 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 A 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 A 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 A 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 A 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 A 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 A 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 A 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 A 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 A 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 A 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 A 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 A 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 A 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 A 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 A 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 A 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 A 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 A 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 A 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 A 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 A 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 A 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 B 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 B 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 B 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 B 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 B 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 B 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 B 425 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 B 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 B 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 B 425 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 B 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 B 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 B 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 B 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 B 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 B 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 B 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 B 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 B 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 B 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 B 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 B 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 B 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 B 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 B 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 B 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 B 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 B 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 B 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 B 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 B 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 B 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 C 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 C 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 C 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 C 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 C 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 C 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 C 425 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 C 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 C 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 C 425 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 C 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 C 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 C 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 C 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 C 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 C 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 C 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 C 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 C 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 C 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 C 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 C 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 C 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 C 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 C 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 C 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 C 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 C 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 C 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 C 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 C 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 C 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS HET CA A 501 1 HET NAP A 502 48 HET AKG A 503 10 HET EDO A 504 4 HET CA B 501 1 HET NAP B 502 48 HET AKG B 503 10 HET CA C 501 1 HET NAP C 502 48 HET AKG C 503 10 HETNAM CA CALCIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM AKG 2-OXOGLUTARIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 CA 3(CA 2+) FORMUL 5 NAP 3(C21 H28 N7 O17 P3) FORMUL 6 AKG 3(C5 H6 O5) FORMUL 7 EDO C2 H6 O2 FORMUL 14 HOH *356(H2 O) HELIX 1 1 ASP A 16 LEU A 30 1 15 HELIX 2 2 GLY A 45 THR A 52 1 8 HELIX 3 3 ASP A 54 ASN A 68 1 15 HELIX 4 4 ASP A 79 LYS A 87 1 9 HELIX 5 5 SER A 94 GLY A 104 1 11 HELIX 6 6 GLY A 136 ALA A 141 5 6 HELIX 7 7 ASP A 186 GLY A 204 1 19 HELIX 8 8 LYS A 218 GLN A 234 1 17 HELIX 9 9 TYR A 235 GLN A 242 1 8 HELIX 10 10 ILE A 251 SER A 261 1 11 HELIX 11 11 LYS A 270 TYR A 285 1 16 HELIX 12 12 VAL A 312 LYS A 321 1 10 HELIX 13 13 PRO A 329 ASN A 348 1 20 HELIX 14 14 ASN A 349 ALA A 369 1 21 HELIX 15 15 THR A 373 LYS A 381 1 9 HELIX 16 16 GLY A 382 VAL A 386 5 5 HELIX 17 17 GLN A 387 TYR A 391 5 5 HELIX 18 18 ASN A 393 SER A 415 1 23 HELIX 19 19 ASP B 16 LEU B 30 1 15 HELIX 20 20 GLY B 45 THR B 52 1 8 HELIX 21 21 ASP B 54 ASN B 68 1 15 HELIX 22 22 ASP B 79 LYS B 87 1 9 HELIX 23 23 SER B 94 GLY B 104 1 11 HELIX 24 24 GLY B 136 ALA B 141 5 6 HELIX 25 25 ASP B 186 GLY B 204 1 19 HELIX 26 26 LYS B 218 GLN B 234 1 17 HELIX 27 27 TYR B 235 GLN B 242 1 8 HELIX 28 28 ILE B 251 SER B 261 1 11 HELIX 29 29 LYS B 270 TYR B 285 1 16 HELIX 30 30 VAL B 312 LYS B 321 1 10 HELIX 31 31 PRO B 329 ASN B 348 1 20 HELIX 32 32 ASN B 349 ALA B 369 1 21 HELIX 33 33 THR B 373 GLY B 382 1 10 HELIX 34 34 LEU B 383 VAL B 386 5 4 HELIX 35 35 GLN B 387 TYR B 391 5 5 HELIX 36 36 ASN B 393 LEU B 414 1 22 HELIX 37 37 ASP C 16 LEU C 30 1 15 HELIX 38 38 GLY C 45 THR C 52 1 8 HELIX 39 39 ASP C 54 ASN C 68 1 15 HELIX 40 40 ASP C 79 LYS C 87 1 9 HELIX 41 41 SER C 94 GLY C 104 1 11 HELIX 42 42 GLY C 136 ALA C 141 5 6 HELIX 43 43 GLN C 185 GLY C 204 1 20 HELIX 44 44 LYS C 218 GLN C 234 1 17 HELIX 45 45 TYR C 235 GLN C 242 1 8 HELIX 46 46 ILE C 251 SER C 261 1 11 HELIX 47 47 LYS C 270 TYR C 285 1 16 HELIX 48 48 VAL C 312 LYS C 321 1 10 HELIX 49 49 PRO C 329 ASN C 348 1 20 HELIX 50 50 ASN C 349 ALA C 369 1 21 HELIX 51 51 THR C 373 GLY C 382 1 10 HELIX 52 52 LEU C 383 VAL C 386 5 4 HELIX 53 53 GLN C 387 TYR C 391 5 5 HELIX 54 54 ASN C 393 LYS C 413 1 21 SHEET 1 A10 VAL A 35 ASP A 43 0 SHEET 2 A10 ILE A 5 GLN A 14 1 N GLY A 7 O GLU A 36 SHEET 3 A10 VAL A 69 LYS A 72 1 O VAL A 71 N MET A 13 SHEET 4 A10 VAL A 303 GLU A 306 1 O ALA A 305 N GLY A 70 SHEET 5 A10 MET A 291 VAL A 296 -1 N LEU A 295 O GLU A 304 SHEET 6 A10 THR A 106 ALA A 111 -1 N THR A 106 O VAL A 296 SHEET 7 A10 ILE A 128 HIS A 133 -1 O HIS A 132 N VAL A 107 SHEET 8 A10 PHE A 265 CYS A 269 1 O TRP A 267 N ILE A 129 SHEET 9 A10 LEU A 207 THR A 211 1 N TYR A 208 O ALA A 268 SHEET 10 A10 TYR A 246 LEU A 250 1 O ARG A 249 N LEU A 209 SHEET 1 B 4 THR A 142 VAL A 146 0 SHEET 2 B 4 GLY A 177 GLN A 185 -1 O GLY A 177 N VAL A 146 SHEET 3 B 4 GLY B 177 GLN B 185 -1 O MET B 180 N MET A 182 SHEET 4 B 4 THR B 142 VAL B 146 -1 N VAL B 146 O GLY B 177 SHEET 1 C 4 VAL A 165 PHE A 172 0 SHEET 2 C 4 GLY A 150 PRO A 158 -1 N GLY A 150 O PHE A 172 SHEET 3 C 4 GLY B 150 PRO B 158 -1 O THR B 155 N GLU A 153 SHEET 4 C 4 VAL B 165 PHE B 172 -1 O PHE B 172 N GLY B 150 SHEET 1 D10 VAL B 35 ASP B 43 0 SHEET 2 D10 ILE B 5 GLN B 14 1 N GLY B 7 O GLU B 36 SHEET 3 D10 VAL B 69 LYS B 72 1 O VAL B 71 N VAL B 11 SHEET 4 D10 VAL B 303 GLU B 306 1 O ALA B 305 N GLY B 70 SHEET 5 D10 MET B 291 VAL B 296 -1 N LEU B 295 O GLU B 304 SHEET 6 D10 THR B 106 ALA B 111 -1 N GLU B 110 O THR B 292 SHEET 7 D10 ILE B 128 HIS B 133 -1 O HIS B 132 N VAL B 107 SHEET 8 D10 PHE B 265 CYS B 269 1 O TRP B 267 N ILE B 129 SHEET 9 D10 LEU B 207 THR B 211 1 N TYR B 208 O ALA B 268 SHEET 10 D10 TYR B 246 LEU B 250 1 O ARG B 249 N LEU B 209 SHEET 1 E10 VAL C 35 ASP C 43 0 SHEET 2 E10 ILE C 5 GLN C 14 1 N ILE C 5 O GLU C 36 SHEET 3 E10 VAL C 69 LYS C 72 1 O VAL C 71 N VAL C 11 SHEET 4 E10 VAL C 303 GLU C 306 1 O ALA C 305 N GLY C 70 SHEET 5 E10 MET C 291 VAL C 296 -1 N LEU C 295 O GLU C 304 SHEET 6 E10 THR C 106 ALA C 111 -1 N THR C 106 O VAL C 296 SHEET 7 E10 ILE C 128 HIS C 133 -1 O HIS C 132 N VAL C 107 SHEET 8 E10 PHE C 265 CYS C 269 1 O TRP C 267 N ILE C 129 SHEET 9 E10 LEU C 207 THR C 211 1 N TYR C 208 O ALA C 268 SHEET 10 E10 TYR C 246 LEU C 250 1 O ARG C 249 N LEU C 209 SHEET 1 F 2 THR C 142 VAL C 146 0 SHEET 2 F 2 GLY C 177 GLY C 181 -1 O GLY C 177 N VAL C 146 SHEET 1 G 2 GLY C 150 TYR C 156 0 SHEET 2 G 2 VAL C 165 PHE C 172 -1 O PHE C 172 N GLY C 150 LINK OD2 ASP A 252 CA CA B 501 1555 1555 2.35 LINK OD1 ASP A 275 CA CA A 501 1555 1555 2.22 LINK O ASP A 275 CA CA A 501 1555 1555 2.64 LINK OD2 ASP A 279 CA CA A 501 1555 1555 2.37 LINK CA CA A 501 O2 AKG A 503 1555 1555 2.36 LINK CA CA A 501 O5 AKG A 503 1555 1555 2.79 LINK CA CA A 501 O HOH A 601 1555 1555 2.42 LINK CA CA A 501 O HOH A 602 1555 1555 2.52 LINK CA CA A 501 OD2 ASP B 252 1555 1555 2.31 LINK OD1 ASP B 275 CA CA B 501 1555 1555 2.27 LINK O ASP B 275 CA CA B 501 1555 1555 2.68 LINK OD2 ASP B 279 CA CA B 501 1555 1555 2.49 LINK CA CA B 501 O2 AKG B 503 1555 1555 2.42 LINK CA CA B 501 O5 AKG B 503 1555 1555 2.81 LINK CA CA B 501 O HOH B 601 1555 1555 2.41 LINK CA CA B 501 O HOH B 602 1555 1555 2.45 LINK OD1 ASP C 275 CA CA C 501 1555 1555 2.32 LINK O ASP C 275 CA CA C 501 1555 1555 2.54 LINK OD2 ASP C 279 CA CA C 501 1555 1555 2.33 LINK CA CA C 501 O2 AKG C 503 1555 1555 2.22 LINK CA CA C 501 O5 AKG C 503 1555 1555 3.01 LINK CA CA C 501 O HOH C 601 1555 1555 2.55 LINK CA CA C 501 O HOH C 602 1555 1555 2.49 SITE 1 AC1 6 ASP A 275 ASP A 279 AKG A 503 HOH A 601 SITE 2 AC1 6 HOH A 602 ASP B 252 SITE 1 AC2 35 LYS A 72 ALA A 74 THR A 75 ILE A 76 SITE 2 AC2 35 THR A 77 ARG A 82 ASN A 96 LEU A 288 SITE 3 AC2 35 ALA A 307 ALA A 308 HIS A 309 GLY A 310 SITE 4 AC2 35 THR A 311 VAL A 312 THR A 313 ARG A 314 SITE 5 AC2 35 HIS A 315 THR A 327 ASN A 328 AKG A 503 SITE 6 AC2 35 HOH A 608 HOH A 611 HOH A 613 HOH A 614 SITE 7 AC2 35 HOH A 615 HOH A 620 HOH A 636 HOH A 657 SITE 8 AC2 35 HOH A 736 LEU B 250 ASP B 253 GLN B 257 SITE 9 AC2 35 LYS B 260 HOH B 638 HOH B 676 SITE 1 AC3 15 THR A 77 SER A 94 ASN A 96 ARG A 100 SITE 2 AC3 15 ARG A 109 TYR A 139 ASP A 275 CA A 501 SITE 3 AC3 15 NAP A 502 HOH A 601 HOH A 602 HOH A 615 SITE 4 AC3 15 LYS B 212 ILE B 215 ASP B 252 SITE 1 AC4 4 ASP A 273 GLN A 277 ASP B 273 GLN B 277 SITE 1 AC5 6 ASP A 252 ASP B 275 ASP B 279 AKG B 503 SITE 2 AC5 6 HOH B 601 HOH B 602 SITE 1 AC6 30 LEU A 250 ASP A 253 GLN A 257 LYS A 260 SITE 2 AC6 30 HOH A 706 LYS B 72 ALA B 74 THR B 75 SITE 3 AC6 30 THR B 77 ARG B 82 ASN B 96 LEU B 288 SITE 4 AC6 30 ALA B 307 ALA B 308 HIS B 309 GLY B 310 SITE 5 AC6 30 THR B 311 VAL B 312 THR B 313 ARG B 314 SITE 6 AC6 30 HIS B 315 ASN B 328 AKG B 503 HOH B 610 SITE 7 AC6 30 HOH B 617 HOH B 620 HOH B 644 HOH B 658 SITE 8 AC6 30 HOH B 664 HOH B 668 SITE 1 AC7 13 ASP A 252 THR B 77 SER B 94 ASN B 96 SITE 2 AC7 13 ARG B 100 ARG B 109 TYR B 139 ASP B 275 SITE 3 AC7 13 CA B 501 NAP B 502 HOH B 601 HOH B 602 SITE 4 AC7 13 HOH B 617 SITE 1 AC8 6 ASP C 252 ASP C 275 ASP C 279 AKG C 503 SITE 2 AC8 6 HOH C 601 HOH C 602 SITE 1 AC9 33 LYS C 72 ALA C 74 THR C 75 ILE C 76 SITE 2 AC9 33 THR C 77 ARG C 82 ASN C 96 LEU C 250 SITE 3 AC9 33 ASP C 253 GLN C 257 LYS C 260 LEU C 288 SITE 4 AC9 33 ALA C 307 ALA C 308 HIS C 309 GLY C 310 SITE 5 AC9 33 THR C 311 VAL C 312 THR C 313 ARG C 314 SITE 6 AC9 33 HIS C 315 ASN C 328 AKG C 503 HOH C 610 SITE 7 AC9 33 HOH C 614 HOH C 618 HOH C 620 HOH C 622 SITE 8 AC9 33 HOH C 630 HOH C 644 HOH C 656 HOH C 658 SITE 9 AC9 33 HOH C 676 SITE 1 BC1 14 THR C 77 SER C 94 ASN C 96 ARG C 100 SITE 2 BC1 14 ARG C 109 TYR C 139 LYS C 212 ILE C 215 SITE 3 BC1 14 ASP C 252 ASP C 275 CA C 501 NAP C 502 SITE 4 BC1 14 HOH C 602 HOH C 610 CRYST1 96.360 274.598 115.990 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008621 0.00000