data_4L8P # _entry.id 4L8P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4L8P pdb_00004l8p 10.2210/pdb4l8p/pdb RCSB RCSB080321 ? ? WWPDB D_1000080321 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetTrack JCSG-421787 . unspecified PDB 4L8O ;Crystal structure of a bile-acid 7-alpha dehydratase (CLOHYLEM_06634) from Clostridium hylemonae DSM 15053 at 2.20 A resolution - Ortholog structure ; unspecified PDB 4LEH ;Crystal structure of a bile-acid 7-alpha dehydratase (CLOSCI_03134) from Clostridium scindens ATCC 35704 at 2.90 A resolution - Ortholog structure ; unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4L8P _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-06-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a bile-acid 7-alpha dehydratase (CLOHIR_00079) from Clostridium hiranonis DSM 13275 at 1.60 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4L8P _cell.length_a 58.905 _cell.length_b 58.905 _cell.length_c 91.340 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4L8P _symmetry.Int_Tables_number 173 _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bile acid 7a-dehydratase, BaiE' 22287.031 1 4.2.1.106 ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 5 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 1 ? ? ? ? 6 water nat water 18.015 124 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)TLEARIEALEKEIQRLNDIEAIKQLKAKYFRCLDGKLWDELETTLSPNIETS YSDGKLVFHSPKEVTEYLAAA(MSE)PKEEIS(MSE)H(MSE)GHTPEITIDSENTATGRWYLEDNLIFTDGKYKNVGIN GGAFYTDKYEKIDGQWYIKETGYVRIFEEHF(MSE)RDPKIHITSN(MSE)HKEK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMTLEARIEALEKEIQRLNDIEAIKQLKAKYFRCLDGKLWDELETTLSPNIETSYSDGKLVF HSPKEVTEYLAAAMPKEEISMHMGHTPEITIDSENTATGRWYLEDNLIFTDGKYKNVGINGGAFYTDKYEKIDGQWYIKE TGYVRIFEEHFMRDPKIHITSNMHKEK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-421787 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 THR n 1 22 LEU n 1 23 GLU n 1 24 ALA n 1 25 ARG n 1 26 ILE n 1 27 GLU n 1 28 ALA n 1 29 LEU n 1 30 GLU n 1 31 LYS n 1 32 GLU n 1 33 ILE n 1 34 GLN n 1 35 ARG n 1 36 LEU n 1 37 ASN n 1 38 ASP n 1 39 ILE n 1 40 GLU n 1 41 ALA n 1 42 ILE n 1 43 LYS n 1 44 GLN n 1 45 LEU n 1 46 LYS n 1 47 ALA n 1 48 LYS n 1 49 TYR n 1 50 PHE n 1 51 ARG n 1 52 CYS n 1 53 LEU n 1 54 ASP n 1 55 GLY n 1 56 LYS n 1 57 LEU n 1 58 TRP n 1 59 ASP n 1 60 GLU n 1 61 LEU n 1 62 GLU n 1 63 THR n 1 64 THR n 1 65 LEU n 1 66 SER n 1 67 PRO n 1 68 ASN n 1 69 ILE n 1 70 GLU n 1 71 THR n 1 72 SER n 1 73 TYR n 1 74 SER n 1 75 ASP n 1 76 GLY n 1 77 LYS n 1 78 LEU n 1 79 VAL n 1 80 PHE n 1 81 HIS n 1 82 SER n 1 83 PRO n 1 84 LYS n 1 85 GLU n 1 86 VAL n 1 87 THR n 1 88 GLU n 1 89 TYR n 1 90 LEU n 1 91 ALA n 1 92 ALA n 1 93 ALA n 1 94 MSE n 1 95 PRO n 1 96 LYS n 1 97 GLU n 1 98 GLU n 1 99 ILE n 1 100 SER n 1 101 MSE n 1 102 HIS n 1 103 MSE n 1 104 GLY n 1 105 HIS n 1 106 THR n 1 107 PRO n 1 108 GLU n 1 109 ILE n 1 110 THR n 1 111 ILE n 1 112 ASP n 1 113 SER n 1 114 GLU n 1 115 ASN n 1 116 THR n 1 117 ALA n 1 118 THR n 1 119 GLY n 1 120 ARG n 1 121 TRP n 1 122 TYR n 1 123 LEU n 1 124 GLU n 1 125 ASP n 1 126 ASN n 1 127 LEU n 1 128 ILE n 1 129 PHE n 1 130 THR n 1 131 ASP n 1 132 GLY n 1 133 LYS n 1 134 TYR n 1 135 LYS n 1 136 ASN n 1 137 VAL n 1 138 GLY n 1 139 ILE n 1 140 ASN n 1 141 GLY n 1 142 GLY n 1 143 ALA n 1 144 PHE n 1 145 TYR n 1 146 THR n 1 147 ASP n 1 148 LYS n 1 149 TYR n 1 150 GLU n 1 151 LYS n 1 152 ILE n 1 153 ASP n 1 154 GLY n 1 155 GLN n 1 156 TRP n 1 157 TYR n 1 158 ILE n 1 159 LYS n 1 160 GLU n 1 161 THR n 1 162 GLY n 1 163 TYR n 1 164 VAL n 1 165 ARG n 1 166 ILE n 1 167 PHE n 1 168 GLU n 1 169 GLU n 1 170 HIS n 1 171 PHE n 1 172 MSE n 1 173 ARG n 1 174 ASP n 1 175 PRO n 1 176 LYS n 1 177 ILE n 1 178 HIS n 1 179 ILE n 1 180 THR n 1 181 SER n 1 182 ASN n 1 183 MSE n 1 184 HIS n 1 185 LYS n 1 186 GLU n 1 187 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'baiE, CLOHIR_00079' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium hiranonis DSM 13275' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 500633 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9RB47_9FIRM _struct_ref.pdbx_db_accession Q9RB47 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTLEARIEALEKEIQRLNDIEAIKQLKAKYFRCLDGKLWDELETTLSPNIETSYSDGKLVFHSPKEVTEYLAAAMPKEEI SMHMGHTPEITIDSENTATGRWYLEDNLIFTDGKYKNVGINGGAFYTDKYEKIDGQWYIKETGYVRIFEEHFMRDPKIHI TSNMHKEK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4L8P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 187 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9RB47 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4L8P MSE A 1 ? UNP Q9RB47 ? ? 'expression tag' -18 1 1 4L8P GLY A 2 ? UNP Q9RB47 ? ? 'expression tag' -17 2 1 4L8P SER A 3 ? UNP Q9RB47 ? ? 'expression tag' -16 3 1 4L8P ASP A 4 ? UNP Q9RB47 ? ? 'expression tag' -15 4 1 4L8P LYS A 5 ? UNP Q9RB47 ? ? 'expression tag' -14 5 1 4L8P ILE A 6 ? UNP Q9RB47 ? ? 'expression tag' -13 6 1 4L8P HIS A 7 ? UNP Q9RB47 ? ? 'expression tag' -12 7 1 4L8P HIS A 8 ? UNP Q9RB47 ? ? 'expression tag' -11 8 1 4L8P HIS A 9 ? UNP Q9RB47 ? ? 'expression tag' -10 9 1 4L8P HIS A 10 ? UNP Q9RB47 ? ? 'expression tag' -9 10 1 4L8P HIS A 11 ? UNP Q9RB47 ? ? 'expression tag' -8 11 1 4L8P HIS A 12 ? UNP Q9RB47 ? ? 'expression tag' -7 12 1 4L8P GLU A 13 ? UNP Q9RB47 ? ? 'expression tag' -6 13 1 4L8P ASN A 14 ? UNP Q9RB47 ? ? 'expression tag' -5 14 1 4L8P LEU A 15 ? UNP Q9RB47 ? ? 'expression tag' -4 15 1 4L8P TYR A 16 ? UNP Q9RB47 ? ? 'expression tag' -3 16 1 4L8P PHE A 17 ? UNP Q9RB47 ? ? 'expression tag' -2 17 1 4L8P GLN A 18 ? UNP Q9RB47 ? ? 'expression tag' -1 18 1 4L8P GLY A 19 ? UNP Q9RB47 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4L8P # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '50.00% polyethylene glycol 200, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2010-11-23 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 0.97945 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4L8P _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 29.452 _reflns.number_all 23715 _reflns.number_obs 23715 _reflns.pdbx_netI_over_sigmaI 11.100 _reflns.pdbx_Rsym_value 0.095 _reflns.pdbx_redundancy 7.300 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 17.737 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.60 1.64 ? 12174 ? 0.651 2.7 0.651 ? 7.000 ? 1743 100.0 1 1 1.64 1.69 ? 11918 ? 0.578 3.0 0.578 ? 7.100 ? 1680 100.0 2 1 1.69 1.74 ? 11953 ? 0.470 3.6 0.470 ? 7.200 ? 1663 100.0 3 1 1.74 1.79 ? 11744 ? 0.383 4.3 0.383 ? 7.200 ? 1626 100.0 4 1 1.79 1.85 ? 11284 ? 0.318 5.0 0.318 ? 7.300 ? 1556 100.0 5 1 1.85 1.91 ? 10961 ? 0.276 5.8 0.276 ? 7.300 ? 1506 100.0 6 1 1.91 1.98 ? 10592 ? 0.200 7.4 0.200 ? 7.200 ? 1465 100.0 7 1 1.98 2.07 ? 10117 ? 0.163 9.2 0.163 ? 7.300 ? 1384 100.0 8 1 2.07 2.16 ? 9940 ? 0.155 10.8 0.155 ? 7.300 ? 1357 100.0 9 1 2.16 2.26 ? 9487 ? 0.141 12.1 0.141 ? 7.300 ? 1302 100.0 10 1 2.26 2.39 ? 8918 ? 0.124 13.7 0.124 ? 7.400 ? 1204 100.0 11 1 2.39 2.53 ? 8677 ? 0.121 14.2 0.121 ? 7.400 ? 1175 100.0 12 1 2.53 2.70 ? 8043 ? 0.107 15.8 0.107 ? 7.400 ? 1089 100.0 13 1 2.70 2.92 ? 7574 ? 0.087 18.2 0.087 ? 7.400 ? 1020 100.0 14 1 2.92 3.20 ? 6953 ? 0.067 20.7 0.067 ? 7.400 ? 934 100.0 15 1 3.20 3.58 ? 6232 ? 0.057 25.6 0.057 ? 7.400 ? 841 100.0 16 1 3.58 4.13 ? 5616 ? 0.058 28.4 0.058 ? 7.400 ? 758 100.0 17 1 4.13 5.06 ? 4739 ? 0.051 29.2 0.051 ? 7.400 ? 639 100.0 18 1 5.06 7.16 ? 3628 ? 0.061 24.9 0.061 ? 7.300 ? 495 100.0 19 1 7.16 29.452 ? 1963 ? 0.058 26.3 0.058 ? 7.100 ? 278 97.9 20 1 # _refine.entry_id 4L8P _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 29.452 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9300 _refine.ls_number_reflns_obs 23680 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. A NICKEL ION (NI+2) IS MODELED BASED ON A PEAK IN THE ANOMALOUS DIFFERENCE FOURIER. X-RAY FLUORESCENCE EMISSION SPECTRA SHOWED PEAKS CORRESPONDING TO THE NICKEL AND ZINC K-EDGES. DATA SETS WERE COLLECTED ABOVE AND BELOW THE ZINC AND NICKEL K-EDGES. COMPARING ANOMALOUS DIFFERENCE FOURIER MAPS FROM THESE 4 DATA SETS SUGGESTS A MIXTURE WITH MORE NICKEL THAN ZINC. 7. THE MODELED PEG 200 FRAGMENTS (1PE AND PGE) AND SODIUM IONS ARE PRESENT IN THE CRYSTALLIZATION SOLUTION AND PROTEIN BUFFER. 8. THE SCATTERING FACTORS FOR SULFUR, SELENIUM AND ZINC ATOMS WERE ADJUSTED BY REFMAC 5.7.0032 TO ACCOUNT FOR ANOMALOUS DISPERSION. THE SELENIUM CORRECTION WAS DERIVED FROM THE X-RAY FLUORESCENCE MAD SCAN WITH CHOOCH. THE CORRECTIONS FOR NICKEL AND SULFUR WERE BASED ON THE WAVELENGTH 0.97945 A (S F'= 0.18, SE F'= -7.60, NI F'= 0.06). THE CROMER MANN VALUES LISTED IN THE CIF VERSION OF THE FILE INCLUDE THIS CORRECTION. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1526 _refine.ls_R_factor_R_work 0.1512 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1808 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.2000 _refine.ls_number_reflns_R_free 1222 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.7923 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.7300 _refine.aniso_B[2][2] 0.7300 _refine.aniso_B[3][3] -2.3500 _refine.aniso_B[1][2] 0.7300 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9720 _refine.correlation_coeff_Fo_to_Fc_free 0.9640 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0760 _refine.pdbx_overall_ESU_R_Free 0.0780 _refine.overall_SU_ML 0.0520 _refine.overall_SU_B 3.0620 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 96.870 _refine.B_iso_min 12.290 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.150 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1366 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1518 _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 29.452 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1465 0.011 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1369 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1973 1.488 1.983 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3174 0.895 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 176 6.669 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 71 33.408 24.930 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 241 12.031 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 11.896 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 207 0.093 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1632 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 322 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 695 2.120 3.209 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 694 2.117 3.194 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 874 3.206 6.006 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.6000 _refine_ls_shell.d_res_low 1.6420 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.9400 _refine_ls_shell.number_reflns_R_work 1648 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2340 _refine_ls_shell.R_factor_R_free 0.2840 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1744 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4L8P _struct.title 'Crystal structure of a bile-acid 7-alpha dehydratase (CLOHIR_00079) from Clostridium hiranonis DSM 13275 at 1.60 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text 'Cystatin-like, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, LYASE' _struct_keywords.pdbx_keywords LYASE _struct_keywords.entry_id 4L8P # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 21 ? LYS A 56 ? THR A 2 LYS A 37 1 ? 36 HELX_P HELX_P2 2 LEU A 57 ? THR A 63 ? LEU A 38 THR A 44 1 ? 7 HELX_P HELX_P3 3 SER A 82 ? MSE A 94 ? SER A 63 MSE A 75 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A THR 21 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A ALA 93 C ? ? ? 1_555 A MSE 94 N A ? A ALA 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale4 covale both ? A ALA 93 C ? ? ? 1_555 A MSE 94 N B ? A ALA 74 A MSE 75 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? A MSE 94 C A ? ? 1_555 A PRO 95 N ? ? A MSE 75 A PRO 76 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale6 covale both ? A MSE 94 C B ? ? 1_555 A PRO 95 N ? ? A MSE 75 A PRO 76 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale7 covale both ? A SER 100 C ? ? ? 1_555 A MSE 101 N A ? A SER 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A SER 100 C ? ? ? 1_555 A MSE 101 N B ? A SER 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A MSE 101 C A ? ? 1_555 A HIS 102 N ? ? A MSE 82 A HIS 83 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale10 covale both ? A MSE 101 C B ? ? 1_555 A HIS 102 N ? ? A MSE 82 A HIS 83 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale11 covale both ? A HIS 102 C ? ? ? 1_555 A MSE 103 N ? ? A HIS 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? A MSE 103 C ? ? ? 1_555 A GLY 104 N ? ? A MSE 84 A GLY 85 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale13 covale both ? A PHE 171 C ? ? ? 1_555 A MSE 172 N ? ? A PHE 152 A MSE 153 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale14 covale both ? A MSE 172 C ? ? ? 1_555 A ARG 173 N ? ? A MSE 153 A ARG 154 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? A ASN 182 C ? ? ? 1_555 A MSE 183 N ? ? A ASN 163 A MSE 164 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale16 covale both ? A MSE 183 C ? ? ? 1_555 A HIS 184 N ? ? A MSE 164 A HIS 165 1_555 ? ? ? ? ? ? ? 1.331 ? ? metalc1 metalc ? ? A HIS 105 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 86 A NI 201 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc2 metalc ? ? A GLU 124 OE1 ? ? ? 1_555 C NA . NA ? ? A GLU 105 A NA 202 1_555 ? ? ? ? ? ? ? 2.592 ? ? metalc3 metalc ? ? B NI . NI ? ? ? 1_555 F HOH . O ? ? A NI 201 A HOH 321 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 202 A HOH 350 1_555 ? ? ? ? ? ? ? 2.558 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 73 ? SER A 74 ? TYR A 54 SER A 55 A 2 VAL A 79 ? PHE A 80 ? VAL A 60 PHE A 61 B 1 GLU A 98 ? ILE A 111 ? GLU A 79 ILE A 92 B 2 THR A 116 ? PHE A 129 ? THR A 97 PHE A 110 B 3 VAL A 137 ? ILE A 152 ? VAL A 118 ILE A 133 B 4 GLN A 155 ? MSE A 172 ? GLN A 136 MSE A 153 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 73 ? N TYR A 54 O PHE A 80 ? O PHE A 61 B 1 2 N ILE A 99 ? N ILE A 80 O ILE A 128 ? O ILE A 109 B 2 3 N GLY A 119 ? N GLY A 100 O ASP A 147 ? O ASP A 128 B 3 4 N LYS A 148 ? N LYS A 129 O GLU A 160 ? O GLU A 141 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 201 ? 6 'BINDING SITE FOR RESIDUE NI A 201' AC2 Software A NA 202 ? 6 'BINDING SITE FOR RESIDUE NA A 202' AC3 Software A PGE 203 ? 4 'BINDING SITE FOR RESIDUE PGE A 203' AC4 Software A 1PE 204 ? 10 'BINDING SITE FOR RESIDUE 1PE A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 105 ? HIS A 86 . ? 3_565 ? 2 AC1 6 HIS A 105 ? HIS A 86 . ? 2_665 ? 3 AC1 6 HIS A 105 ? HIS A 86 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 321 . ? 2_665 ? 5 AC1 6 HOH F . ? HOH A 321 . ? 3_565 ? 6 AC1 6 HOH F . ? HOH A 321 . ? 1_555 ? 7 AC2 6 GLU A 124 ? GLU A 105 . ? 3_565 ? 8 AC2 6 GLU A 124 ? GLU A 105 . ? 2_665 ? 9 AC2 6 GLU A 124 ? GLU A 105 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH A 350 . ? 2_665 ? 11 AC2 6 HOH F . ? HOH A 350 . ? 1_555 ? 12 AC2 6 HOH F . ? HOH A 350 . ? 3_565 ? 13 AC3 4 PHE A 171 ? PHE A 152 . ? 1_555 ? 14 AC3 4 MSE A 172 ? MSE A 153 . ? 1_555 ? 15 AC3 4 ASP A 174 ? ASP A 155 . ? 3_565 ? 16 AC3 4 LYS A 176 ? LYS A 157 . ? 3_565 ? 17 AC4 10 TYR A 49 ? TYR A 30 . ? 1_555 ? 18 AC4 10 SER A 74 ? SER A 55 . ? 1_555 ? 19 AC4 10 ASP A 75 ? ASP A 56 . ? 1_555 ? 20 AC4 10 LEU A 90 ? LEU A 71 . ? 1_555 ? 21 AC4 10 TYR A 145 ? TYR A 126 . ? 1_555 ? 22 AC4 10 THR A 161 ? THR A 142 . ? 1_555 ? 23 AC4 10 HOH F . ? HOH A 313 . ? 1_555 ? 24 AC4 10 HOH F . ? HOH A 323 . ? 1_555 ? 25 AC4 10 HOH F . ? HOH A 325 . ? 1_555 ? 26 AC4 10 HOH F . ? HOH A 351 . ? 1_555 ? # _atom_sites.entry_id 4L8P _atom_sites.fract_transf_matrix[1][1] 0.016977 _atom_sites.fract_transf_matrix[1][2] 0.009801 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019603 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010948 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag C 2.3100 20.8439 1.0200 10.2075 1.5886 0.5687 0.8650 51.6512 0.2156 ? ? H 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 ? ? N 12.2126 0.0057 3.1322 9.8933 2.0125 28.9975 1.1663 0.5826 -11.5290 ? ? NA 3.2565 2.6671 3.9362 6.1153 1.3998 0.2001 1.0032 14.0390 0.4609 0.0569 0.0490 NI 11.4166 3.6766 7.4005 0.2449 5.3442 8.8730 0.9773 22.1626 0.9202 0.0588 1.9499 O 3.0485 13.2771 2.2868 5.7011 1.5463 0.3239 0.8670 32.9089 0.2508 ? ? S 6.9053 1.4679 5.2034 22.2151 1.4379 0.2536 1.5863 56.1720 1.0496 0.1827 0.2341 SE 17.0006 2.4098 5.8196 0.2726 3.9731 15.2372 4.3543 43.8163 -4.7591 -7.60 4.92 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 ? ? ? A . n A 1 15 LEU 15 -4 ? ? ? A . n A 1 16 TYR 16 -3 ? ? ? A . n A 1 17 PHE 17 -2 ? ? ? A . n A 1 18 GLN 18 -1 ? ? ? A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 THR 21 2 2 THR THR A . n A 1 22 LEU 22 3 3 LEU LEU A . n A 1 23 GLU 23 4 4 GLU GLU A . n A 1 24 ALA 24 5 5 ALA ALA A . n A 1 25 ARG 25 6 6 ARG ARG A . n A 1 26 ILE 26 7 7 ILE ILE A . n A 1 27 GLU 27 8 8 GLU GLU A . n A 1 28 ALA 28 9 9 ALA ALA A . n A 1 29 LEU 29 10 10 LEU LEU A . n A 1 30 GLU 30 11 11 GLU GLU A . n A 1 31 LYS 31 12 12 LYS LYS A . n A 1 32 GLU 32 13 13 GLU GLU A . n A 1 33 ILE 33 14 14 ILE ILE A . n A 1 34 GLN 34 15 15 GLN GLN A . n A 1 35 ARG 35 16 16 ARG ARG A . n A 1 36 LEU 36 17 17 LEU LEU A . n A 1 37 ASN 37 18 18 ASN ASN A . n A 1 38 ASP 38 19 19 ASP ASP A . n A 1 39 ILE 39 20 20 ILE ILE A . n A 1 40 GLU 40 21 21 GLU GLU A . n A 1 41 ALA 41 22 22 ALA ALA A . n A 1 42 ILE 42 23 23 ILE ILE A . n A 1 43 LYS 43 24 24 LYS LYS A . n A 1 44 GLN 44 25 25 GLN GLN A . n A 1 45 LEU 45 26 26 LEU LEU A . n A 1 46 LYS 46 27 27 LYS LYS A . n A 1 47 ALA 47 28 28 ALA ALA A . n A 1 48 LYS 48 29 29 LYS LYS A . n A 1 49 TYR 49 30 30 TYR TYR A . n A 1 50 PHE 50 31 31 PHE PHE A . n A 1 51 ARG 51 32 32 ARG ARG A . n A 1 52 CYS 52 33 33 CYS CYS A . n A 1 53 LEU 53 34 34 LEU LEU A . n A 1 54 ASP 54 35 35 ASP ASP A . n A 1 55 GLY 55 36 36 GLY GLY A . n A 1 56 LYS 56 37 37 LYS LYS A . n A 1 57 LEU 57 38 38 LEU LEU A . n A 1 58 TRP 58 39 39 TRP TRP A . n A 1 59 ASP 59 40 40 ASP ASP A . n A 1 60 GLU 60 41 41 GLU GLU A . n A 1 61 LEU 61 42 42 LEU LEU A . n A 1 62 GLU 62 43 43 GLU GLU A . n A 1 63 THR 63 44 44 THR THR A . n A 1 64 THR 64 45 45 THR THR A . n A 1 65 LEU 65 46 46 LEU LEU A . n A 1 66 SER 66 47 47 SER SER A . n A 1 67 PRO 67 48 48 PRO PRO A . n A 1 68 ASN 68 49 49 ASN ASN A . n A 1 69 ILE 69 50 50 ILE ILE A . n A 1 70 GLU 70 51 51 GLU GLU A . n A 1 71 THR 71 52 52 THR THR A . n A 1 72 SER 72 53 53 SER SER A . n A 1 73 TYR 73 54 54 TYR TYR A . n A 1 74 SER 74 55 55 SER SER A . n A 1 75 ASP 75 56 56 ASP ASP A . n A 1 76 GLY 76 57 57 GLY GLY A . n A 1 77 LYS 77 58 58 LYS LYS A . n A 1 78 LEU 78 59 59 LEU LEU A . n A 1 79 VAL 79 60 60 VAL VAL A . n A 1 80 PHE 80 61 61 PHE PHE A . n A 1 81 HIS 81 62 62 HIS HIS A . n A 1 82 SER 82 63 63 SER SER A . n A 1 83 PRO 83 64 64 PRO PRO A . n A 1 84 LYS 84 65 65 LYS LYS A . n A 1 85 GLU 85 66 66 GLU GLU A . n A 1 86 VAL 86 67 67 VAL VAL A . n A 1 87 THR 87 68 68 THR THR A . n A 1 88 GLU 88 69 69 GLU GLU A . n A 1 89 TYR 89 70 70 TYR TYR A . n A 1 90 LEU 90 71 71 LEU LEU A . n A 1 91 ALA 91 72 72 ALA ALA A . n A 1 92 ALA 92 73 73 ALA ALA A . n A 1 93 ALA 93 74 74 ALA ALA A . n A 1 94 MSE 94 75 75 MSE MSE A . n A 1 95 PRO 95 76 76 PRO PRO A . n A 1 96 LYS 96 77 77 LYS LYS A . n A 1 97 GLU 97 78 78 GLU GLU A . n A 1 98 GLU 98 79 79 GLU GLU A . n A 1 99 ILE 99 80 80 ILE ILE A . n A 1 100 SER 100 81 81 SER SER A . n A 1 101 MSE 101 82 82 MSE MSE A . n A 1 102 HIS 102 83 83 HIS HIS A . n A 1 103 MSE 103 84 84 MSE MSE A . n A 1 104 GLY 104 85 85 GLY GLY A . n A 1 105 HIS 105 86 86 HIS HIS A . n A 1 106 THR 106 87 87 THR THR A . n A 1 107 PRO 107 88 88 PRO PRO A . n A 1 108 GLU 108 89 89 GLU GLU A . n A 1 109 ILE 109 90 90 ILE ILE A . n A 1 110 THR 110 91 91 THR THR A . n A 1 111 ILE 111 92 92 ILE ILE A . n A 1 112 ASP 112 93 93 ASP ASP A . n A 1 113 SER 113 94 94 SER SER A . n A 1 114 GLU 114 95 95 GLU GLU A . n A 1 115 ASN 115 96 96 ASN ASN A . n A 1 116 THR 116 97 97 THR THR A . n A 1 117 ALA 117 98 98 ALA ALA A . n A 1 118 THR 118 99 99 THR THR A . n A 1 119 GLY 119 100 100 GLY GLY A . n A 1 120 ARG 120 101 101 ARG ARG A . n A 1 121 TRP 121 102 102 TRP TRP A . n A 1 122 TYR 122 103 103 TYR TYR A . n A 1 123 LEU 123 104 104 LEU LEU A . n A 1 124 GLU 124 105 105 GLU GLU A . n A 1 125 ASP 125 106 106 ASP ASP A . n A 1 126 ASN 126 107 107 ASN ASN A . n A 1 127 LEU 127 108 108 LEU LEU A . n A 1 128 ILE 128 109 109 ILE ILE A . n A 1 129 PHE 129 110 110 PHE PHE A . n A 1 130 THR 130 111 111 THR THR A . n A 1 131 ASP 131 112 112 ASP ASP A . n A 1 132 GLY 132 113 113 GLY GLY A . n A 1 133 LYS 133 114 114 LYS LYS A . n A 1 134 TYR 134 115 115 TYR TYR A . n A 1 135 LYS 135 116 116 LYS LYS A . n A 1 136 ASN 136 117 117 ASN ASN A . n A 1 137 VAL 137 118 118 VAL VAL A . n A 1 138 GLY 138 119 119 GLY GLY A . n A 1 139 ILE 139 120 120 ILE ILE A . n A 1 140 ASN 140 121 121 ASN ASN A . n A 1 141 GLY 141 122 122 GLY GLY A . n A 1 142 GLY 142 123 123 GLY GLY A . n A 1 143 ALA 143 124 124 ALA ALA A . n A 1 144 PHE 144 125 125 PHE PHE A . n A 1 145 TYR 145 126 126 TYR TYR A . n A 1 146 THR 146 127 127 THR THR A . n A 1 147 ASP 147 128 128 ASP ASP A . n A 1 148 LYS 148 129 129 LYS LYS A . n A 1 149 TYR 149 130 130 TYR TYR A . n A 1 150 GLU 150 131 131 GLU GLU A . n A 1 151 LYS 151 132 132 LYS LYS A . n A 1 152 ILE 152 133 133 ILE ILE A . n A 1 153 ASP 153 134 134 ASP ASP A . n A 1 154 GLY 154 135 135 GLY GLY A . n A 1 155 GLN 155 136 136 GLN GLN A . n A 1 156 TRP 156 137 137 TRP TRP A . n A 1 157 TYR 157 138 138 TYR TYR A . n A 1 158 ILE 158 139 139 ILE ILE A . n A 1 159 LYS 159 140 140 LYS LYS A . n A 1 160 GLU 160 141 141 GLU GLU A . n A 1 161 THR 161 142 142 THR THR A . n A 1 162 GLY 162 143 143 GLY GLY A . n A 1 163 TYR 163 144 144 TYR TYR A . n A 1 164 VAL 164 145 145 VAL VAL A . n A 1 165 ARG 165 146 146 ARG ARG A . n A 1 166 ILE 166 147 147 ILE ILE A . n A 1 167 PHE 167 148 148 PHE PHE A . n A 1 168 GLU 168 149 149 GLU GLU A . n A 1 169 GLU 169 150 150 GLU GLU A . n A 1 170 HIS 170 151 151 HIS HIS A . n A 1 171 PHE 171 152 152 PHE PHE A . n A 1 172 MSE 172 153 153 MSE MSE A . n A 1 173 ARG 173 154 154 ARG ARG A . n A 1 174 ASP 174 155 155 ASP ASP A . n A 1 175 PRO 175 156 156 PRO PRO A . n A 1 176 LYS 176 157 157 LYS LYS A . n A 1 177 ILE 177 158 158 ILE ILE A . n A 1 178 HIS 178 159 159 HIS HIS A . n A 1 179 ILE 179 160 160 ILE ILE A . n A 1 180 THR 180 161 161 THR THR A . n A 1 181 SER 181 162 162 SER SER A . n A 1 182 ASN 182 163 163 ASN ASN A . n A 1 183 MSE 183 164 164 MSE MSE A . n A 1 184 HIS 184 165 165 HIS HIS A . n A 1 185 LYS 185 166 166 LYS LYS A . n A 1 186 GLU 186 167 167 GLU GLU A . n A 1 187 LYS 187 168 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 201 201 NI NI A . C 3 NA 1 202 202 NA NA A . D 4 PGE 1 203 203 PGE PGE A . E 5 1PE 1 204 204 1PE 1PE A . F 6 HOH 1 301 205 HOH HOH A . F 6 HOH 2 302 206 HOH HOH A . F 6 HOH 3 303 207 HOH HOH A . F 6 HOH 4 304 208 HOH HOH A . F 6 HOH 5 305 209 HOH HOH A . F 6 HOH 6 306 210 HOH HOH A . F 6 HOH 7 307 211 HOH HOH A . F 6 HOH 8 308 212 HOH HOH A . F 6 HOH 9 309 213 HOH HOH A . F 6 HOH 10 310 214 HOH HOH A . F 6 HOH 11 311 215 HOH HOH A . F 6 HOH 12 312 216 HOH HOH A . F 6 HOH 13 313 217 HOH HOH A . F 6 HOH 14 314 218 HOH HOH A . F 6 HOH 15 315 219 HOH HOH A . F 6 HOH 16 316 220 HOH HOH A . F 6 HOH 17 317 221 HOH HOH A . F 6 HOH 18 318 222 HOH HOH A . F 6 HOH 19 319 223 HOH HOH A . F 6 HOH 20 320 224 HOH HOH A . F 6 HOH 21 321 225 HOH HOH A . F 6 HOH 22 322 226 HOH HOH A . F 6 HOH 23 323 227 HOH HOH A . F 6 HOH 24 324 228 HOH HOH A . F 6 HOH 25 325 229 HOH HOH A . F 6 HOH 26 326 230 HOH HOH A . F 6 HOH 27 327 231 HOH HOH A . F 6 HOH 28 328 232 HOH HOH A . F 6 HOH 29 329 233 HOH HOH A . F 6 HOH 30 330 234 HOH HOH A . F 6 HOH 31 331 235 HOH HOH A . F 6 HOH 32 332 236 HOH HOH A . F 6 HOH 33 333 237 HOH HOH A . F 6 HOH 34 334 238 HOH HOH A . F 6 HOH 35 335 239 HOH HOH A . F 6 HOH 36 336 240 HOH HOH A . F 6 HOH 37 337 241 HOH HOH A . F 6 HOH 38 338 242 HOH HOH A . F 6 HOH 39 339 243 HOH HOH A . F 6 HOH 40 340 244 HOH HOH A . F 6 HOH 41 341 245 HOH HOH A . F 6 HOH 42 342 246 HOH HOH A . F 6 HOH 43 343 247 HOH HOH A . F 6 HOH 44 344 248 HOH HOH A . F 6 HOH 45 345 249 HOH HOH A . F 6 HOH 46 346 250 HOH HOH A . F 6 HOH 47 347 251 HOH HOH A . F 6 HOH 48 348 252 HOH HOH A . F 6 HOH 49 349 253 HOH HOH A . F 6 HOH 50 350 254 HOH HOH A . F 6 HOH 51 351 255 HOH HOH A . F 6 HOH 52 352 256 HOH HOH A . F 6 HOH 53 353 257 HOH HOH A . F 6 HOH 54 354 258 HOH HOH A . F 6 HOH 55 355 259 HOH HOH A . F 6 HOH 56 356 260 HOH HOH A . F 6 HOH 57 357 261 HOH HOH A . F 6 HOH 58 358 262 HOH HOH A . F 6 HOH 59 359 263 HOH HOH A . F 6 HOH 60 360 264 HOH HOH A . F 6 HOH 61 361 265 HOH HOH A . F 6 HOH 62 362 266 HOH HOH A . F 6 HOH 63 363 267 HOH HOH A . F 6 HOH 64 364 268 HOH HOH A . F 6 HOH 65 365 269 HOH HOH A . F 6 HOH 66 366 270 HOH HOH A . F 6 HOH 67 367 271 HOH HOH A . F 6 HOH 68 368 272 HOH HOH A . F 6 HOH 69 369 273 HOH HOH A . F 6 HOH 70 370 274 HOH HOH A . F 6 HOH 71 371 275 HOH HOH A . F 6 HOH 72 372 276 HOH HOH A . F 6 HOH 73 373 277 HOH HOH A . F 6 HOH 74 374 278 HOH HOH A . F 6 HOH 75 375 279 HOH HOH A . F 6 HOH 76 376 280 HOH HOH A . F 6 HOH 77 377 281 HOH HOH A . F 6 HOH 78 378 282 HOH HOH A . F 6 HOH 79 379 283 HOH HOH A . F 6 HOH 80 380 284 HOH HOH A . F 6 HOH 81 381 285 HOH HOH A . F 6 HOH 82 382 286 HOH HOH A . F 6 HOH 83 383 287 HOH HOH A . F 6 HOH 84 384 288 HOH HOH A . F 6 HOH 85 385 289 HOH HOH A . F 6 HOH 86 386 290 HOH HOH A . F 6 HOH 87 387 291 HOH HOH A . F 6 HOH 88 388 292 HOH HOH A . F 6 HOH 89 389 293 HOH HOH A . F 6 HOH 90 390 294 HOH HOH A . F 6 HOH 91 391 295 HOH HOH A . F 6 HOH 92 392 296 HOH HOH A . F 6 HOH 93 393 297 HOH HOH A . F 6 HOH 94 394 298 HOH HOH A . F 6 HOH 95 395 299 HOH HOH A . F 6 HOH 96 396 300 HOH HOH A . F 6 HOH 97 397 301 HOH HOH A . F 6 HOH 98 398 302 HOH HOH A . F 6 HOH 99 399 303 HOH HOH A . F 6 HOH 100 400 304 HOH HOH A . F 6 HOH 101 401 305 HOH HOH A . F 6 HOH 102 402 306 HOH HOH A . F 6 HOH 103 403 307 HOH HOH A . F 6 HOH 104 404 308 HOH HOH A . F 6 HOH 105 405 309 HOH HOH A . F 6 HOH 106 406 310 HOH HOH A . F 6 HOH 107 407 311 HOH HOH A . F 6 HOH 108 408 312 HOH HOH A . F 6 HOH 109 409 313 HOH HOH A . F 6 HOH 110 410 314 HOH HOH A . F 6 HOH 111 411 315 HOH HOH A . F 6 HOH 112 412 316 HOH HOH A . F 6 HOH 113 413 317 HOH HOH A . F 6 HOH 114 414 318 HOH HOH A . F 6 HOH 115 415 319 HOH HOH A . F 6 HOH 116 416 320 HOH HOH A . F 6 HOH 117 417 321 HOH HOH A . F 6 HOH 118 418 322 HOH HOH A . F 6 HOH 119 419 323 HOH HOH A . F 6 HOH 120 420 324 HOH HOH A . F 6 HOH 121 421 325 HOH HOH A . F 6 HOH 122 422 326 HOH HOH A . F 6 HOH 123 423 327 HOH HOH A . F 6 HOH 124 424 328 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 94 A MSE 75 ? MET SELENOMETHIONINE 3 A MSE 101 A MSE 82 ? MET SELENOMETHIONINE 4 A MSE 103 A MSE 84 ? MET SELENOMETHIONINE 5 A MSE 172 A MSE 153 ? MET SELENOMETHIONINE 6 A MSE 183 A MSE 164 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10990 ? 1 MORE -94 ? 1 'SSA (A^2)' 22650 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 29.4525000000 0.8660254038 -0.5000000000 0.0000000000 51.0132264099 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -29.4525000000 -0.8660254038 -0.5000000000 0.0000000000 51.0132264099 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NI 201 ? B NI . 2 1 A NA 202 ? C NA . 3 1 A HOH 421 ? F HOH . 4 1 A HOH 422 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 105 ? A HIS 86 ? 1_555 NI ? B NI . ? A NI 201 ? 1_555 O ? F HOH . ? A HOH 321 ? 1_555 87.2 ? 2 OE1 ? A GLU 124 ? A GLU 105 ? 1_555 NA ? C NA . ? A NA 202 ? 1_555 O ? F HOH . ? A HOH 350 ? 1_555 91.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-21 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_struct_conn_angle 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 3 'Structure model' '_struct_ref_seq_dif.details' 31 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 12.9580 _pdbx_refine_tls.origin_y 35.8940 _pdbx_refine_tls.origin_z 5.2550 _pdbx_refine_tls.T[1][1] 0.0248 _pdbx_refine_tls.T[2][2] 0.0283 _pdbx_refine_tls.T[3][3] 0.0363 _pdbx_refine_tls.T[1][2] -0.0073 _pdbx_refine_tls.T[1][3] 0.0089 _pdbx_refine_tls.T[2][3] -0.0021 _pdbx_refine_tls.L[1][1] 0.3613 _pdbx_refine_tls.L[2][2] 0.4674 _pdbx_refine_tls.L[3][3] 0.5996 _pdbx_refine_tls.L[1][2] -0.0481 _pdbx_refine_tls.L[1][3] 0.1564 _pdbx_refine_tls.L[2][3] -0.0771 _pdbx_refine_tls.S[1][1] 0.0007 _pdbx_refine_tls.S[2][2] 0.0131 _pdbx_refine_tls.S[3][3] -0.0137 _pdbx_refine_tls.S[1][2] 0.0389 _pdbx_refine_tls.S[1][3] 0.0171 _pdbx_refine_tls.S[2][3] -0.0779 _pdbx_refine_tls.S[2][1] -0.0366 _pdbx_refine_tls.S[3][1] -0.0611 _pdbx_refine_tls.S[3][2] 0.0930 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 167 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.15 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4L8P _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THIS CONSTRUCT (RESIDUES 1-168) WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG.' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 58 ? ? -122.32 -52.29 2 1 MSE A 75 ? B -118.14 70.70 3 1 SER A 94 ? ? -160.14 -167.69 4 1 ASN A 96 ? ? -144.33 20.86 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 12 ? CD ? A LYS 31 CD 2 1 Y 1 A LYS 12 ? CE ? A LYS 31 CE 3 1 Y 1 A LYS 12 ? NZ ? A LYS 31 NZ 4 1 Y 1 A LYS 114 ? CG ? A LYS 133 CG 5 1 Y 1 A LYS 114 ? CD ? A LYS 133 CD 6 1 Y 1 A LYS 114 ? CE ? A LYS 133 CE 7 1 Y 1 A LYS 114 ? NZ ? A LYS 133 NZ 8 1 Y 1 A LYS 140 ? CE ? A LYS 159 CE 9 1 Y 1 A LYS 140 ? NZ ? A LYS 159 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A ASN -5 ? A ASN 14 15 1 Y 1 A LEU -4 ? A LEU 15 16 1 Y 1 A TYR -3 ? A TYR 16 17 1 Y 1 A PHE -2 ? A PHE 17 18 1 Y 1 A GLN -1 ? A GLN 18 19 1 Y 1 A LYS 168 ? A LYS 187 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'SODIUM ION' NA 4 'TRIETHYLENE GLYCOL' PGE 5 'PENTAETHYLENE GLYCOL' 1PE 6 water HOH #