HEADER OXIDOREDUCTASE/OXIDOREDUCTASE SUBSTRATE 21-JUN-13 4LCE TITLE CTBP1 IN COMPLEX WITH SUBSTRATE MTOB COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TERMINAL-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEHYDROGENASE DOMAIN (UNP RESIDUES 28-353); COMPND 5 SYNONYM: CTBP1; COMPND 6 EC: 1.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTBP, CTBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ROSSMANN FOLD, TRANSCRIPTIONAL CO-REPRESSOR, D-ISOMER 2-HYDROXYACID KEYWDS 2 DEHYDROGENASE, OXIDOREDUCTASE-OXIDOREDUCTASE SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.J.HILBERT,C.A.SCHIFFER,W.E.ROYER JR. REVDAT 6 28-FEB-24 4LCE 1 REMARK SEQADV REVDAT 5 15-NOV-17 4LCE 1 REMARK REVDAT 4 12-NOV-14 4LCE 1 KEYWDS REVDAT 3 14-MAY-14 4LCE 1 JRNL REVDAT 2 09-APR-14 4LCE 1 JRNL REVDAT 1 19-MAR-14 4LCE 0 JRNL AUTH B.J.HILBERT,S.R.GROSSMANN,C.A.SCHIFFER,W.E.ROYER JRNL TITL CRYSTAL STRUCTURES OF HUMAN CTBP IN COMPLEX WITH SUBSTRATE JRNL TITL 2 MTOB REVEAL ACTIVE SITE FEATURES USEFUL FOR INHIBITOR JRNL TITL 3 DESIGN. JRNL REF FEBS LETT. V. 588 1743 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 24657618 JRNL DOI 10.1016/J.FEBSLET.2014.03.026 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 15420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1074 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.394 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.305 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2608 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2436 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3561 ; 1.349 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5566 ; 0.761 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;33.552 ;23.784 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;14.475 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.568 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2969 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 MM MAGNESIUM CHLORIDE, 140 MM REMARK 280 SODIUM FORMATE, 100 MM HEPES, 2.5 MM NAD+, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.84600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.69200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.84600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.69200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.84600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 107.69200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.84600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 107.69200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 88.97000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 574 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 579 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 ARG A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 HIS A 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 60 OE1 NE2 REMARK 470 HIS A 63 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 GLN A 277 CG CD OE1 NE2 REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 301 CG CD OE1 NE2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 333 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 46.19 -106.24 REMARK 500 TYR A 76 -148.81 -98.58 REMARK 500 ASP A 106 96.31 -69.87 REMARK 500 LEU A 113 9.54 -64.80 REMARK 500 LEU A 182 55.39 -119.10 REMARK 500 HIS A 236 27.42 -144.70 REMARK 500 ALA A 265 -89.72 -94.34 REMARK 500 ASN A 352 38.11 -146.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KMT A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LCJ RELATED DB: PDB DBREF 4LCE A 28 353 UNP Q13363 CTBP1_HUMAN 28 353 SEQADV 4LCE MET A 7 UNP Q13363 EXPRESSION TAG SEQADV 4LCE GLY A 8 UNP Q13363 EXPRESSION TAG SEQADV 4LCE SER A 9 UNP Q13363 EXPRESSION TAG SEQADV 4LCE SER A 10 UNP Q13363 EXPRESSION TAG SEQADV 4LCE HIS A 11 UNP Q13363 EXPRESSION TAG SEQADV 4LCE HIS A 12 UNP Q13363 EXPRESSION TAG SEQADV 4LCE HIS A 13 UNP Q13363 EXPRESSION TAG SEQADV 4LCE HIS A 14 UNP Q13363 EXPRESSION TAG SEQADV 4LCE HIS A 15 UNP Q13363 EXPRESSION TAG SEQADV 4LCE HIS A 16 UNP Q13363 EXPRESSION TAG SEQADV 4LCE SER A 17 UNP Q13363 EXPRESSION TAG SEQADV 4LCE SER A 18 UNP Q13363 EXPRESSION TAG SEQADV 4LCE GLY A 19 UNP Q13363 EXPRESSION TAG SEQADV 4LCE LEU A 20 UNP Q13363 EXPRESSION TAG SEQADV 4LCE VAL A 21 UNP Q13363 EXPRESSION TAG SEQADV 4LCE PRO A 22 UNP Q13363 EXPRESSION TAG SEQADV 4LCE ARG A 23 UNP Q13363 EXPRESSION TAG SEQADV 4LCE GLY A 24 UNP Q13363 EXPRESSION TAG SEQADV 4LCE SER A 25 UNP Q13363 EXPRESSION TAG SEQADV 4LCE HIS A 26 UNP Q13363 EXPRESSION TAG SEQADV 4LCE MET A 27 UNP Q13363 EXPRESSION TAG SEQRES 1 A 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 347 LEU VAL PRO ARG GLY SER HIS MET PRO LEU VAL ALA LEU SEQRES 3 A 347 LEU ASP GLY ARG ASP CYS THR VAL GLU MET PRO ILE LEU SEQRES 4 A 347 LYS ASP VAL ALA THR VAL ALA PHE CYS ASP ALA GLN SER SEQRES 5 A 347 THR GLN GLU ILE HIS GLU LYS VAL LEU ASN GLU ALA VAL SEQRES 6 A 347 GLY ALA LEU MET TYR HIS THR ILE THR LEU THR ARG GLU SEQRES 7 A 347 ASP LEU GLU LYS PHE LYS ALA LEU ARG ILE ILE VAL ARG SEQRES 8 A 347 ILE GLY SER GLY PHE ASP ASN ILE ASP ILE LYS SER ALA SEQRES 9 A 347 GLY ASP LEU GLY ILE ALA VAL CYS ASN VAL PRO ALA ALA SEQRES 10 A 347 SER VAL GLU GLU THR ALA ASP SER THR LEU CYS HIS ILE SEQRES 11 A 347 LEU ASN LEU TYR ARG ARG ALA THR TRP LEU HIS GLN ALA SEQRES 12 A 347 LEU ARG GLU GLY THR ARG VAL GLN SER VAL GLU GLN ILE SEQRES 13 A 347 ARG GLU VAL ALA SER GLY ALA ALA ARG ILE ARG GLY GLU SEQRES 14 A 347 THR LEU GLY ILE ILE GLY LEU GLY ARG VAL GLY GLN ALA SEQRES 15 A 347 VAL ALA LEU ARG ALA LYS ALA PHE GLY PHE ASN VAL LEU SEQRES 16 A 347 PHE TYR ASP PRO TYR LEU SER ASP GLY VAL GLU ARG ALA SEQRES 17 A 347 LEU GLY LEU GLN ARG VAL SER THR LEU GLN ASP LEU LEU SEQRES 18 A 347 PHE HIS SER ASP CYS VAL THR LEU HIS CYS GLY LEU ASN SEQRES 19 A 347 GLU HIS ASN HIS HIS LEU ILE ASN ASP PHE THR VAL LYS SEQRES 20 A 347 GLN MET ARG GLN GLY ALA PHE LEU VAL ASN THR ALA ARG SEQRES 21 A 347 GLY GLY LEU VAL ASP GLU LYS ALA LEU ALA GLN ALA LEU SEQRES 22 A 347 LYS GLU GLY ARG ILE ARG GLY ALA ALA LEU ASP VAL HIS SEQRES 23 A 347 GLU SER GLU PRO PHE SER PHE SER GLN GLY PRO LEU LYS SEQRES 24 A 347 ASP ALA PRO ASN LEU ILE CYS THR PRO HIS ALA ALA TRP SEQRES 25 A 347 TYR SER GLU GLN ALA SER ILE GLU MET ARG GLU GLU ALA SEQRES 26 A 347 ALA ARG GLU ILE ARG ARG ALA ILE THR GLY ARG ILE PRO SEQRES 27 A 347 ASP SER LEU LYS ASN CYS VAL ASN LYS HET NAD A 401 88 HET KMT A 402 9 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM KMT 4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 KMT C5 H8 O3 S FORMUL 4 HOH *84(H2 O) HELIX 1 1 GLU A 41 LYS A 46 1 6 HELIX 2 2 SER A 58 ILE A 62 5 5 HELIX 3 3 HIS A 63 GLU A 69 1 7 HELIX 4 4 THR A 82 LYS A 88 1 7 HELIX 5 5 ASP A 106 LEU A 113 1 8 HELIX 6 6 SER A 124 ARG A 142 1 19 HELIX 7 7 ARG A 142 GLU A 152 1 11 HELIX 8 8 SER A 158 ALA A 166 1 9 HELIX 9 9 GLY A 183 ALA A 195 1 13 HELIX 10 10 GLY A 210 GLY A 216 1 7 HELIX 11 11 THR A 222 SER A 230 1 9 HELIX 12 12 ASN A 248 MET A 255 1 8 HELIX 13 13 ARG A 266 VAL A 270 5 5 HELIX 14 14 ASP A 271 GLU A 281 1 11 HELIX 15 15 SER A 320 GLY A 341 1 22 SHEET 1 A 5 THR A 50 PHE A 53 0 SHEET 2 A 5 LEU A 29 LEU A 32 1 N LEU A 32 O ALA A 52 SHEET 3 A 5 ALA A 70 MET A 75 1 O VAL A 71 N LEU A 29 SHEET 4 A 5 ILE A 94 ARG A 97 1 O VAL A 96 N ALA A 73 SHEET 5 A 5 ALA A 116 CYS A 118 1 O CYS A 118 N ARG A 97 SHEET 1 B 7 GLN A 218 ARG A 219 0 SHEET 2 B 7 ASN A 199 TYR A 203 1 N PHE A 202 O GLN A 218 SHEET 3 B 7 THR A 176 ILE A 180 1 N ILE A 179 O LEU A 201 SHEET 4 B 7 CYS A 232 LEU A 235 1 O CYS A 232 N GLY A 178 SHEET 5 B 7 ALA A 259 ASN A 263 1 O VAL A 262 N VAL A 233 SHEET 6 B 7 ILE A 284 LEU A 289 1 O ALA A 288 N ASN A 263 SHEET 7 B 7 LEU A 310 CYS A 312 1 O ILE A 311 N ALA A 287 CISPEP 1 GLU A 295 PRO A 296 0 5.06 CISPEP 2 ILE A 343 PRO A 344 0 -6.52 SITE 1 AC1 32 SER A 100 GLY A 101 SER A 124 THR A 128 SITE 2 AC1 32 ILE A 180 GLY A 181 GLY A 183 ARG A 184 SITE 3 AC1 32 VAL A 185 TYR A 203 ASP A 204 PRO A 205 SITE 4 AC1 32 TYR A 206 LEU A 207 HIS A 236 CYS A 237 SITE 5 AC1 32 GLY A 238 ASN A 240 ASN A 243 THR A 264 SITE 6 AC1 32 ALA A 265 ARG A 266 ASP A 290 HIS A 315 SITE 7 AC1 32 ALA A 317 TRP A 318 KMT A 402 HOH A 534 SITE 8 AC1 32 HOH A 567 HOH A 569 HOH A 570 HOH A 582 SITE 1 AC2 11 HIS A 77 ARG A 97 ILE A 98 GLY A 99 SITE 2 AC2 11 SER A 100 GLY A 101 ARG A 266 HIS A 315 SITE 3 AC2 11 MET A 327 NAD A 401 HOH A 536 CRYST1 88.970 88.970 161.538 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011240 0.006489 0.000000 0.00000 SCALE2 0.000000 0.012979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006190 0.00000