HEADER VIRAL PROTEIN 24-JUN-13 4LDI TITLE LOW RESOLUTION STRUCTURE OF EBOLA VIRUS M241R MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN VP40; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 44-326; COMPND 5 SYNONYM: MEMBRANE-ASSOCIATED PROTEIN VP40; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 186538; SOURCE 5 GENE: VP40; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EBOLAVIRUS MATRIX PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.A.BORNHOLDT,D.M.ABLESON,E.O.SAPHIRE REVDAT 3 28-FEB-24 4LDI 1 SEQADV REVDAT 2 04-SEP-13 4LDI 1 JRNL REVDAT 1 21-AUG-13 4LDI 0 JRNL AUTH Z.A.BORNHOLDT,T.NODA,D.M.ABELSON,P.HALFMANN,M.R.WOOD, JRNL AUTH 2 Y.KAWAOKA,E.O.SAPHIRE JRNL TITL STRUCTURAL REARRANGEMENT OF EBOLA VIRUS VP40 BEGETS MULTIPLE JRNL TITL 2 FUNCTIONS IN THE VIRUS LIFE CYCLE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 154 763 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23953110 JRNL DOI 10.1016/J.CELL.2013.07.015 REMARK 2 REMARK 2 RESOLUTION. 4.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1150) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 6880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.314 REMARK 3 R VALUE (WORKING SET) : 0.312 REMARK 3 FREE R VALUE : 0.375 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7933 - 5.2267 0.99 3336 172 0.3115 0.3669 REMARK 3 2 5.2267 - 4.1500 1.00 3213 159 0.3121 0.3966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.650 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3822 REMARK 3 ANGLE : 1.403 5236 REMARK 3 CHIRALITY : 0.073 636 REMARK 3 PLANARITY : 0.009 668 REMARK 3 DIHEDRAL : 13.691 1426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 44:194 OR RESSEQ REMARK 3 201:221 OR RESSEQ 232:273 OR RESSEQ 281: REMARK 3 308 ) AND (NOT ELEMENT H) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 44:194 OR RESSEQ REMARK 3 201:221 OR RESSEQ 232:273 OR RESSEQ 281: REMARK 3 308 ) AND (NOT ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 1847 REMARK 3 RMSD : 0.008 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 85 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6895 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.150 REMARK 200 RESOLUTION RANGE LOW (A) : 101.749 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 20% PEG3350, 5% DEXTRAN REMARK 280 SULFATE SODIUM SALT (MR = 5 KDA), PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.40600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.94750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.94750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.70300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.94750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.94750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.10900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.94750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.94750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.70300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.94750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.94750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.10900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.40600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 30 REMARK 465 ALA A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 VAL A 38 REMARK 465 ASP A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 ASP A 42 REMARK 465 LYS A 43 REMARK 465 THR A 195 REMARK 465 PRO A 196 REMARK 465 THR A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 ASN A 200 REMARK 465 SER A 222 REMARK 465 GLY A 223 REMARK 465 LYS A 224 REMARK 465 LYS A 225 REMARK 465 GLY A 226 REMARK 465 ASN A 227 REMARK 465 SER A 228 REMARK 465 ALA A 229 REMARK 465 ASP A 230 REMARK 465 LEU A 231 REMARK 465 LYS A 274 REMARK 465 LYS A 275 REMARK 465 VAL A 276 REMARK 465 THR A 277 REMARK 465 SER A 278 REMARK 465 LYS A 279 REMARK 465 ASN A 280 REMARK 465 CYS A 311 REMARK 465 ASP A 312 REMARK 465 THR A 313 REMARK 465 CYS A 314 REMARK 465 HIS A 315 REMARK 465 SER A 316 REMARK 465 PRO A 317 REMARK 465 ALA A 318 REMARK 465 SER A 319 REMARK 465 LEU A 320 REMARK 465 PRO A 321 REMARK 465 ALA A 322 REMARK 465 VAL A 323 REMARK 465 ILE A 324 REMARK 465 GLU A 325 REMARK 465 LYS A 326 REMARK 465 MET B 30 REMARK 465 ALA B 31 REMARK 465 HIS B 32 REMARK 465 HIS B 33 REMARK 465 HIS B 34 REMARK 465 HIS B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 VAL B 38 REMARK 465 ASP B 39 REMARK 465 ASP B 40 REMARK 465 ASP B 41 REMARK 465 ASP B 42 REMARK 465 LYS B 43 REMARK 465 THR B 195 REMARK 465 PRO B 196 REMARK 465 THR B 197 REMARK 465 GLY B 198 REMARK 465 SER B 199 REMARK 465 ASN B 200 REMARK 465 SER B 222 REMARK 465 GLY B 223 REMARK 465 LYS B 224 REMARK 465 LYS B 225 REMARK 465 GLY B 226 REMARK 465 ASN B 227 REMARK 465 SER B 228 REMARK 465 ALA B 229 REMARK 465 ASP B 230 REMARK 465 LEU B 231 REMARK 465 LYS B 274 REMARK 465 LYS B 275 REMARK 465 VAL B 276 REMARK 465 THR B 277 REMARK 465 SER B 278 REMARK 465 LYS B 279 REMARK 465 ASN B 280 REMARK 465 CYS B 311 REMARK 465 ASP B 312 REMARK 465 THR B 313 REMARK 465 CYS B 314 REMARK 465 HIS B 315 REMARK 465 SER B 316 REMARK 465 PRO B 317 REMARK 465 ALA B 318 REMARK 465 SER B 319 REMARK 465 LEU B 320 REMARK 465 PRO B 321 REMARK 465 ALA B 322 REMARK 465 VAL B 323 REMARK 465 ILE B 324 REMARK 465 GLU B 325 REMARK 465 LYS B 326 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 GLN A 238 CG CD OE1 NE2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 GLN B 238 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 115 OH TYR A 120 2.15 REMARK 500 O ILE B 115 OH TYR B 120 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 165 NZ LYS B 291 3445 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 241 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 PRO B 300 C - N - CA ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 61 -58.11 66.92 REMARK 500 THR A 105 -50.30 -123.05 REMARK 500 LEU A 117 35.44 -94.93 REMARK 500 PHE A 161 -63.24 -99.49 REMARK 500 LYS A 212 15.20 -149.81 REMARK 500 ILE A 216 60.98 -105.73 REMARK 500 LEU A 217 133.22 -32.80 REMARK 500 SER A 233 138.59 49.74 REMARK 500 LEU A 244 -47.07 -148.21 REMARK 500 ILE A 252 -55.45 -127.25 REMARK 500 ASP A 253 87.83 -150.39 REMARK 500 ILE A 293 -80.39 -136.45 REMARK 500 LEU A 295 162.95 81.81 REMARK 500 VAL A 298 -60.31 29.44 REMARK 500 ASP A 302 133.84 70.70 REMARK 500 HIS B 61 -57.98 66.79 REMARK 500 THR B 105 -50.27 -123.02 REMARK 500 LEU B 117 35.33 -94.86 REMARK 500 PHE B 161 -63.27 -99.40 REMARK 500 LYS B 212 15.28 -149.69 REMARK 500 ILE B 216 60.89 -105.66 REMARK 500 LEU B 217 133.14 -32.72 REMARK 500 SER B 233 138.51 49.80 REMARK 500 LEU B 244 -47.11 -147.95 REMARK 500 ILE B 252 -55.48 -127.23 REMARK 500 ASP B 253 87.89 -150.39 REMARK 500 ILE B 293 -80.19 -136.59 REMARK 500 LEU B 295 163.03 81.84 REMARK 500 VAL B 298 -60.41 29.77 REMARK 500 ASP B 302 133.87 70.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LD8 RELATED DB: PDB REMARK 900 RELATED ID: 4LDB RELATED DB: PDB REMARK 900 RELATED ID: 4LDD RELATED DB: PDB REMARK 900 RELATED ID: 4LDM RELATED DB: PDB DBREF 4LDI A 44 326 UNP Q05128 VP40_EBOZM 44 326 DBREF 4LDI B 44 326 UNP Q05128 VP40_EBOZM 44 326 SEQADV 4LDI MET A 30 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ALA A 31 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS A 32 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS A 33 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS A 34 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS A 35 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS A 36 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS A 37 UNP Q05128 EXPRESSION TAG SEQADV 4LDI VAL A 38 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ASP A 39 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ASP A 40 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ASP A 41 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ASP A 42 UNP Q05128 EXPRESSION TAG SEQADV 4LDI LYS A 43 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ARG A 241 UNP Q05128 MET 241 ENGINEERED MUTATION SEQADV 4LDI MET B 30 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ALA B 31 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS B 32 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS B 33 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS B 34 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS B 35 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS B 36 UNP Q05128 EXPRESSION TAG SEQADV 4LDI HIS B 37 UNP Q05128 EXPRESSION TAG SEQADV 4LDI VAL B 38 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ASP B 39 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ASP B 40 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ASP B 41 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ASP B 42 UNP Q05128 EXPRESSION TAG SEQADV 4LDI LYS B 43 UNP Q05128 EXPRESSION TAG SEQADV 4LDI ARG B 241 UNP Q05128 MET 241 ENGINEERED MUTATION SEQRES 1 A 297 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 297 LYS GLY ASP THR PRO SER ASN PRO LEU ARG PRO ILE ALA SEQRES 3 A 297 ASP ASP THR ILE ASP HIS ALA SER HIS THR PRO GLY SER SEQRES 4 A 297 VAL SER SER ALA PHE ILE LEU GLU ALA MET VAL ASN VAL SEQRES 5 A 297 ILE SER GLY PRO LYS VAL LEU MET LYS GLN ILE PRO ILE SEQRES 6 A 297 TRP LEU PRO LEU GLY VAL ALA ASP GLN LYS THR TYR SER SEQRES 7 A 297 PHE ASP SER THR THR ALA ALA ILE MET LEU ALA SER TYR SEQRES 8 A 297 THR ILE THR HIS PHE GLY LYS ALA THR ASN PRO LEU VAL SEQRES 9 A 297 ARG VAL ASN ARG LEU GLY PRO GLY ILE PRO ASP HIS PRO SEQRES 10 A 297 LEU ARG LEU LEU ARG ILE GLY ASN GLN ALA PHE LEU GLN SEQRES 11 A 297 GLU PHE VAL LEU PRO PRO VAL GLN LEU PRO GLN TYR PHE SEQRES 12 A 297 THR PHE ASP LEU THR ALA LEU LYS LEU ILE THR GLN PRO SEQRES 13 A 297 LEU PRO ALA ALA THR TRP THR ASP ASP THR PRO THR GLY SEQRES 14 A 297 SER ASN GLY ALA LEU ARG PRO GLY ILE SER PHE HIS PRO SEQRES 15 A 297 LYS LEU ARG PRO ILE LEU LEU PRO ASN LYS SER GLY LYS SEQRES 16 A 297 LYS GLY ASN SER ALA ASP LEU THR SER PRO GLU LYS ILE SEQRES 17 A 297 GLN ALA ILE ARG THR SER LEU GLN ASP PHE LYS ILE VAL SEQRES 18 A 297 PRO ILE ASP PRO THR LYS ASN ILE MET GLY ILE GLU VAL SEQRES 19 A 297 PRO GLU THR LEU VAL HIS LYS LEU THR GLY LYS LYS VAL SEQRES 20 A 297 THR SER LYS ASN GLY GLN PRO ILE ILE PRO VAL LEU LEU SEQRES 21 A 297 PRO LYS TYR ILE GLY LEU ASP PRO VAL ALA PRO GLY ASP SEQRES 22 A 297 LEU THR MET VAL ILE THR GLN ASP CYS ASP THR CYS HIS SEQRES 23 A 297 SER PRO ALA SER LEU PRO ALA VAL ILE GLU LYS SEQRES 1 B 297 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 297 LYS GLY ASP THR PRO SER ASN PRO LEU ARG PRO ILE ALA SEQRES 3 B 297 ASP ASP THR ILE ASP HIS ALA SER HIS THR PRO GLY SER SEQRES 4 B 297 VAL SER SER ALA PHE ILE LEU GLU ALA MET VAL ASN VAL SEQRES 5 B 297 ILE SER GLY PRO LYS VAL LEU MET LYS GLN ILE PRO ILE SEQRES 6 B 297 TRP LEU PRO LEU GLY VAL ALA ASP GLN LYS THR TYR SER SEQRES 7 B 297 PHE ASP SER THR THR ALA ALA ILE MET LEU ALA SER TYR SEQRES 8 B 297 THR ILE THR HIS PHE GLY LYS ALA THR ASN PRO LEU VAL SEQRES 9 B 297 ARG VAL ASN ARG LEU GLY PRO GLY ILE PRO ASP HIS PRO SEQRES 10 B 297 LEU ARG LEU LEU ARG ILE GLY ASN GLN ALA PHE LEU GLN SEQRES 11 B 297 GLU PHE VAL LEU PRO PRO VAL GLN LEU PRO GLN TYR PHE SEQRES 12 B 297 THR PHE ASP LEU THR ALA LEU LYS LEU ILE THR GLN PRO SEQRES 13 B 297 LEU PRO ALA ALA THR TRP THR ASP ASP THR PRO THR GLY SEQRES 14 B 297 SER ASN GLY ALA LEU ARG PRO GLY ILE SER PHE HIS PRO SEQRES 15 B 297 LYS LEU ARG PRO ILE LEU LEU PRO ASN LYS SER GLY LYS SEQRES 16 B 297 LYS GLY ASN SER ALA ASP LEU THR SER PRO GLU LYS ILE SEQRES 17 B 297 GLN ALA ILE ARG THR SER LEU GLN ASP PHE LYS ILE VAL SEQRES 18 B 297 PRO ILE ASP PRO THR LYS ASN ILE MET GLY ILE GLU VAL SEQRES 19 B 297 PRO GLU THR LEU VAL HIS LYS LEU THR GLY LYS LYS VAL SEQRES 20 B 297 THR SER LYS ASN GLY GLN PRO ILE ILE PRO VAL LEU LEU SEQRES 21 B 297 PRO LYS TYR ILE GLY LEU ASP PRO VAL ALA PRO GLY ASP SEQRES 22 B 297 LEU THR MET VAL ILE THR GLN ASP CYS ASP THR CYS HIS SEQRES 23 B 297 SER PRO ALA SER LEU PRO ALA VAL ILE GLU LYS HELIX 1 1 SER A 107 LEU A 117 1 11 HELIX 2 2 LEU A 147 GLY A 153 1 7 HELIX 3 3 GLN A 159 LEU A 163 1 5 HELIX 4 4 SER A 233 SER A 243 1 11 HELIX 5 5 PRO A 254 LYS A 256 5 3 HELIX 6 6 PRO A 264 THR A 272 1 9 HELIX 7 7 SER B 107 LEU B 117 1 11 HELIX 8 8 LEU B 147 GLY B 153 1 7 HELIX 9 9 GLN B 159 LEU B 163 1 5 HELIX 10 10 SER B 233 SER B 243 1 11 HELIX 11 11 PRO B 254 LYS B 256 5 3 HELIX 12 12 PRO B 264 THR B 272 1 9 SHEET 1 A 4 ILE A 54 ALA A 55 0 SHEET 2 A 4 THR A 173 PRO A 185 1 O LEU A 181 N ILE A 54 SHEET 3 A 4 SER A 71 SER A 83 -1 N ILE A 74 O ILE A 182 SHEET 4 A 4 LYS A 86 ALA A 101 -1 O LEU A 96 N LEU A 75 SHEET 1 B 3 TYR A 120 PHE A 125 0 SHEET 2 B 3 LEU A 132 ARG A 137 -1 O LEU A 132 N PHE A 125 SHEET 3 B 3 ASN A 154 LEU A 158 -1 O GLN A 155 N VAL A 135 SHEET 1 C 2 ARG A 204 PRO A 205 0 SHEET 2 C 2 ILE A 307 THR A 308 -1 O THR A 308 N ARG A 204 SHEET 1 D 3 ILE A 249 ASP A 253 0 SHEET 2 D 3 ILE A 258 GLU A 262 -1 O ILE A 258 N ASP A 253 SHEET 3 D 3 ILE A 284 LEU A 288 -1 O VAL A 287 N MET A 259 SHEET 1 E 4 ILE B 54 ALA B 55 0 SHEET 2 E 4 THR B 173 PRO B 185 1 O LEU B 181 N ILE B 54 SHEET 3 E 4 SER B 71 SER B 83 -1 N ILE B 74 O ILE B 182 SHEET 4 E 4 LYS B 86 ALA B 101 -1 O LEU B 96 N LEU B 75 SHEET 1 F 3 TYR B 120 PHE B 125 0 SHEET 2 F 3 LEU B 132 ARG B 137 -1 O LEU B 132 N PHE B 125 SHEET 3 F 3 ASN B 154 LEU B 158 -1 O GLN B 155 N VAL B 135 SHEET 1 G 2 ARG B 204 PRO B 205 0 SHEET 2 G 2 ILE B 307 THR B 308 -1 O THR B 308 N ARG B 204 SHEET 1 H 3 ILE B 249 ASP B 253 0 SHEET 2 H 3 ILE B 258 GLU B 262 -1 O ILE B 258 N ASP B 253 SHEET 3 H 3 ILE B 284 LEU B 288 -1 O VAL B 287 N MET B 259 CRYST1 143.895 143.895 82.812 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012076 0.00000