HEADER VIRAL PROTEIN 24-JUN-13 4LDM TITLE CRYSTAL STRUCTURE OF AN RNA-FREE VP40 OCTAMERIC RING COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN VP40; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 44-188; COMPND 5 SYNONYM: MEMBRANE-ASSOCIATED PROTEIN VP40; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 186538; SOURCE 5 GENE: VP40; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EBOLAVIRUS MATRIX PROTEIN, RNA BINDING RING, VIRAL TRANSCRIPTION KEYWDS 2 REGULATION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.A.BORNHOLDT,D.M.ABLESON,E.O.SAPHIRE REVDAT 3 28-FEB-24 4LDM 1 SEQADV REVDAT 2 04-SEP-13 4LDM 1 JRNL REVDAT 1 21-AUG-13 4LDM 0 JRNL AUTH Z.A.BORNHOLDT,T.NODA,D.M.ABELSON,P.HALFMANN,M.R.WOOD, JRNL AUTH 2 Y.KAWAOKA,E.O.SAPHIRE JRNL TITL STRUCTURAL REARRANGEMENT OF EBOLA VIRUS VP40 BEGETS MULTIPLE JRNL TITL 2 FUNCTIONS IN THE VIRUS LIFE CYCLE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 154 763 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23953110 JRNL DOI 10.1016/J.CELL.2013.07.015 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1150) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5590 - 3.1635 1.00 2798 135 0.1724 0.1835 REMARK 3 2 3.1635 - 2.5110 1.00 2621 153 0.1951 0.1907 REMARK 3 3 2.5110 - 2.1936 1.00 2602 132 0.1946 0.2121 REMARK 3 4 2.1936 - 1.9930 1.00 2577 144 0.2088 0.2871 REMARK 3 5 1.9930 - 1.8500 1.00 2585 130 0.2286 0.2384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 958 REMARK 3 ANGLE : 1.360 1311 REMARK 3 CHIRALITY : 0.076 158 REMARK 3 PLANARITY : 0.008 165 REMARK 3 DIHEDRAL : 12.847 352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3089 29.3544 24.2949 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.1813 REMARK 3 T33: 0.2984 T12: -0.0037 REMARK 3 T13: -0.0125 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.6970 L22: 4.3844 REMARK 3 L33: 2.8761 L12: -2.3188 REMARK 3 L13: -0.0958 L23: 2.7037 REMARK 3 S TENSOR REMARK 3 S11: 0.1547 S12: -0.1771 S13: 0.1862 REMARK 3 S21: -0.1178 S22: 0.1851 S23: -0.3789 REMARK 3 S31: -0.0582 S32: 0.4798 S33: -0.4817 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5524 30.3957 30.9165 REMARK 3 T TENSOR REMARK 3 T11: 0.2462 T22: 0.2170 REMARK 3 T33: 0.3083 T12: 0.0068 REMARK 3 T13: -0.0188 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 5.6716 L22: 3.1245 REMARK 3 L33: 5.9788 L12: -2.1947 REMARK 3 L13: -3.0847 L23: 2.9165 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: -0.4900 S13: 0.3204 REMARK 3 S21: 0.1442 S22: 0.1368 S23: -0.0722 REMARK 3 S31: 0.0750 S32: 0.1366 S33: -0.0961 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0583 28.4800 14.9179 REMARK 3 T TENSOR REMARK 3 T11: 0.2143 T22: 0.1699 REMARK 3 T33: 0.2287 T12: 0.0399 REMARK 3 T13: 0.0006 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 6.2244 L22: 2.4521 REMARK 3 L33: 8.5351 L12: 0.3208 REMARK 3 L13: -3.3903 L23: -1.7639 REMARK 3 S TENSOR REMARK 3 S11: 0.2216 S12: 0.2420 S13: -0.0149 REMARK 3 S21: -0.3305 S22: -0.1160 S23: -0.0838 REMARK 3 S31: 0.2041 S32: 0.4125 S33: -0.1573 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4791 12.0543 35.6525 REMARK 3 T TENSOR REMARK 3 T11: 1.0916 T22: 0.8360 REMARK 3 T33: 1.0402 T12: 0.1521 REMARK 3 T13: 0.0955 T23: 0.4263 REMARK 3 L TENSOR REMARK 3 L11: 3.1347 L22: 0.8359 REMARK 3 L33: 3.8819 L12: 0.6972 REMARK 3 L13: 3.3403 L23: 1.2117 REMARK 3 S TENSOR REMARK 3 S11: 0.0922 S12: -2.4374 S13: -2.9471 REMARK 3 S21: 1.2193 S22: 0.0800 S23: -1.1247 REMARK 3 S31: 2.4071 S32: -0.7012 S33: -0.1919 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1610 22.5420 23.6605 REMARK 3 T TENSOR REMARK 3 T11: 0.2356 T22: 0.2210 REMARK 3 T33: 0.2927 T12: -0.0319 REMARK 3 T13: 0.0366 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 6.6758 L22: 3.0904 REMARK 3 L33: 4.2391 L12: -2.7005 REMARK 3 L13: 4.2669 L23: -0.1461 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: -0.4162 S13: -0.4290 REMARK 3 S21: -0.6361 S22: 0.8379 S23: 0.2466 REMARK 3 S31: 0.6963 S32: -0.8699 S33: -0.5032 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9312 23.4546 11.9932 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.3249 REMARK 3 T33: 0.2951 T12: 0.0051 REMARK 3 T13: -0.0022 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 2.6085 L22: 9.7646 REMARK 3 L33: 2.3000 L12: -4.2138 REMARK 3 L13: -0.1780 L23: 2.2699 REMARK 3 S TENSOR REMARK 3 S11: 0.2409 S12: 0.4621 S13: -0.7261 REMARK 3 S21: -0.3370 S22: -0.0812 S23: 0.3475 REMARK 3 S31: 0.0400 S32: -0.0643 S33: -0.2677 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5503 18.9054 27.6949 REMARK 3 T TENSOR REMARK 3 T11: 0.3411 T22: 0.2322 REMARK 3 T33: 0.3656 T12: -0.0171 REMARK 3 T13: 0.0066 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.6898 L22: 3.7333 REMARK 3 L33: 6.8951 L12: -2.7237 REMARK 3 L13: 2.3225 L23: -1.7947 REMARK 3 S TENSOR REMARK 3 S11: 0.2636 S12: -0.0516 S13: -0.0031 REMARK 3 S21: -0.2219 S22: 0.0989 S23: -0.3762 REMARK 3 S31: 0.9363 S32: 0.0837 S33: -0.5032 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7123 26.4691 33.8080 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.3105 REMARK 3 T33: 0.3457 T12: 0.0056 REMARK 3 T13: -0.0110 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 2.7274 L22: 2.3002 REMARK 3 L33: 1.0012 L12: 0.8104 REMARK 3 L13: -0.4344 L23: 0.4526 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.4923 S13: -0.2800 REMARK 3 S21: 0.2223 S22: 0.1153 S23: -0.0236 REMARK 3 S31: 0.0245 S32: 0.0898 S33: -0.2033 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5367 28.8102 18.7533 REMARK 3 T TENSOR REMARK 3 T11: 0.2637 T22: 0.3665 REMARK 3 T33: 0.4919 T12: 0.0050 REMARK 3 T13: 0.0376 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 4.5908 L22: 6.8905 REMARK 3 L33: 5.0612 L12: -4.4726 REMARK 3 L13: -0.9989 L23: 4.2507 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: -0.6588 S13: 0.7802 REMARK 3 S21: 0.2556 S22: 0.4422 S23: -1.1045 REMARK 3 S31: 0.0814 S32: 1.0760 S33: -0.8445 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 85 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DUAL REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13881 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 80.457 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, 15% PEG20000, 3% DEXTRAN REMARK 280 SULFATE SODIUM SALT (MR = 5 KDA), PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 47.54300 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 47.54300 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 47.54300 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 47.54300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 288 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 296 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 30 REMARK 465 ALA A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 VAL A 38 REMARK 465 ASP A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 ASP A 42 REMARK 465 LYS A 43 REMARK 465 GLY A 44 REMARK 465 ASP A 45 REMARK 465 THR A 46 REMARK 465 PRO A 47 REMARK 465 SER A 48 REMARK 465 ASN A 49 REMARK 465 PRO A 50 REMARK 465 LEU A 51 REMARK 465 ARG A 52 REMARK 465 PRO A 53 REMARK 465 ILE A 54 REMARK 465 ALA A 55 REMARK 465 ASP A 56 REMARK 465 ASP A 57 REMARK 465 THR A 58 REMARK 465 ILE A 59 REMARK 465 ASP A 60 REMARK 465 HIS A 61 REMARK 465 ALA A 62 REMARK 465 SER A 63 REMARK 465 HIS A 64 REMARK 465 THR A 65 REMARK 465 PRO A 66 REMARK 465 GLY A 67 REMARK 465 SER A 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 116 O HOH A 277 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 102 -169.21 -107.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LD8 RELATED DB: PDB REMARK 900 RELATED ID: 4LDB RELATED DB: PDB REMARK 900 RELATED ID: 4LDD RELATED DB: PDB REMARK 900 RELATED ID: 4LDI RELATED DB: PDB DBREF 4LDM A 44 188 UNP Q05128 VP40_EBOZM 44 188 SEQADV 4LDM MET A 30 UNP Q05128 EXPRESSION TAG SEQADV 4LDM ALA A 31 UNP Q05128 EXPRESSION TAG SEQADV 4LDM HIS A 32 UNP Q05128 EXPRESSION TAG SEQADV 4LDM HIS A 33 UNP Q05128 EXPRESSION TAG SEQADV 4LDM HIS A 34 UNP Q05128 EXPRESSION TAG SEQADV 4LDM HIS A 35 UNP Q05128 EXPRESSION TAG SEQADV 4LDM HIS A 36 UNP Q05128 EXPRESSION TAG SEQADV 4LDM HIS A 37 UNP Q05128 EXPRESSION TAG SEQADV 4LDM VAL A 38 UNP Q05128 EXPRESSION TAG SEQADV 4LDM ASP A 39 UNP Q05128 EXPRESSION TAG SEQADV 4LDM ASP A 40 UNP Q05128 EXPRESSION TAG SEQADV 4LDM ASP A 41 UNP Q05128 EXPRESSION TAG SEQADV 4LDM ASP A 42 UNP Q05128 EXPRESSION TAG SEQADV 4LDM LYS A 43 UNP Q05128 EXPRESSION TAG SEQRES 1 A 159 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 159 LYS GLY ASP THR PRO SER ASN PRO LEU ARG PRO ILE ALA SEQRES 3 A 159 ASP ASP THR ILE ASP HIS ALA SER HIS THR PRO GLY SER SEQRES 4 A 159 VAL SER SER ALA PHE ILE LEU GLU ALA MET VAL ASN VAL SEQRES 5 A 159 ILE SER GLY PRO LYS VAL LEU MET LYS GLN ILE PRO ILE SEQRES 6 A 159 TRP LEU PRO LEU GLY VAL ALA ASP GLN LYS THR TYR SER SEQRES 7 A 159 PHE ASP SER THR THR ALA ALA ILE MET LEU ALA SER TYR SEQRES 8 A 159 THR ILE THR HIS PHE GLY LYS ALA THR ASN PRO LEU VAL SEQRES 9 A 159 ARG VAL ASN ARG LEU GLY PRO GLY ILE PRO ASP HIS PRO SEQRES 10 A 159 LEU ARG LEU LEU ARG ILE GLY ASN GLN ALA PHE LEU GLN SEQRES 11 A 159 GLU PHE VAL LEU PRO PRO VAL GLN LEU PRO GLN TYR PHE SEQRES 12 A 159 THR PHE ASP LEU THR ALA LEU LYS LEU ILE THR GLN PRO SEQRES 13 A 159 LEU PRO ALA FORMUL 2 HOH *102(H2 O) HELIX 1 1 SER A 107 ALA A 118 1 12 HELIX 2 2 LEU A 147 ILE A 152 1 6 HELIX 3 3 GLN A 159 LEU A 163 1 5 SHEET 1 A 6 VAL A 87 ALA A 101 0 SHEET 2 A 6 SER A 71 GLY A 84 -1 N VAL A 79 O ILE A 92 SHEET 3 A 6 THR A 173 PRO A 185 -1 O LYS A 180 N GLU A 76 SHEET 4 A 6 TYR A 120 PHE A 125 -1 N ILE A 122 O PHE A 174 SHEET 5 A 6 LEU A 132 ARG A 137 -1 O LEU A 132 N PHE A 125 SHEET 6 A 6 ASN A 154 LEU A 158 -1 O PHE A 157 N VAL A 133 CRYST1 80.457 80.457 47.543 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021033 0.00000