HEADER TRANSCRIPTION 25-JUN-13 4LDV TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF A. THAILANA AUXIN TITLE 2 RESPONSE FACTOR 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUXIN RESPONSE FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ARF1, AT1G59750, F23H11.7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTWIN1 KEYWDS TRANSCRIPTION FACTOR, DNA BINDING, NUCLEUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.R.BOER,A.FREIRE-RIOS,W.M.A.VAN DEN BERG,D.WEIJERS,M.COLL REVDAT 4 03-APR-24 4LDV 1 REMARK REVDAT 3 28-FEB-24 4LDV 1 REMARK SEQADV REVDAT 2 19-FEB-14 4LDV 1 AUTHOR REVDAT 1 12-FEB-14 4LDV 0 JRNL AUTH D.R.BOER,A.FREIRE-RIOS,W.A.VAN DEN BERG,T.SAAKI, JRNL AUTH 2 I.W.MANFIELD,S.KEPINSKI,I.LOPEZ-VIDRIEO,J.M.FRANCO-ZORRILLA, JRNL AUTH 3 S.C.DE VRIES,R.SOLANO,D.WEIJERS,M.COLL JRNL TITL STRUCTURAL BASIS FOR DNA BINDING SPECIFICITY BY THE JRNL TITL 2 AUXIN-DEPENDENT ARF TRANSCRIPTION FACTORS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 156 577 2014 JRNL REFN ISSN 0092-8674 JRNL PMID 24485461 JRNL DOI 10.1016/J.CELL.2013.12.027 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 77670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5486 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.405 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2857 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3881 ; 1.565 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.054 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;38.299 ;22.734 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;13.354 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2196 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 1.413 ; 1.527 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1706 ; 2.394 ; 2.270 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1495 ; 1.716 ; 1.751 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4404 ; 6.954 ;13.834 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5807 36.2228 -20.8238 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0281 REMARK 3 T33: 0.0752 T12: -0.0323 REMARK 3 T13: 0.0046 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.3161 L22: 2.3105 REMARK 3 L33: 1.7414 L12: 0.3002 REMARK 3 L13: -0.6434 L23: -0.2250 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.0947 S13: 0.2776 REMARK 3 S21: -0.0230 S22: 0.0616 S23: -0.2726 REMARK 3 S31: -0.2645 S32: 0.2058 S33: -0.0644 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7234 67.0912 -20.5392 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.0697 REMARK 3 T33: 0.1458 T12: -0.0702 REMARK 3 T13: 0.0260 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.1127 L22: 3.8973 REMARK 3 L33: 2.2680 L12: 1.8526 REMARK 3 L13: 0.8327 L23: 1.0116 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: -0.0471 S13: -0.2755 REMARK 3 S21: 0.1443 S22: -0.0692 S23: 0.2523 REMARK 3 S31: 0.4475 S32: -0.3752 S33: 0.0174 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 233 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3660 35.8256 -8.7095 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.1386 REMARK 3 T33: 0.0253 T12: -0.0395 REMARK 3 T13: -0.0384 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.6783 L22: 0.2866 REMARK 3 L33: 3.0797 L12: 0.8692 REMARK 3 L13: 2.7518 L23: 0.8979 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: -0.1366 S13: 0.1007 REMARK 3 S21: -0.0061 S22: -0.0336 S23: 0.0228 REMARK 3 S31: -0.1584 S32: 0.0377 S33: 0.0988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4LDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 39.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: SEMET DERIVATIVE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75 L OF 4MG/ML ARF1DBD + 0.75 L REMARK 280 CRYSTALLIZATION BUFFER (2.9 M NAFORMATE, 0.1 M MES 6.0, 50 MM KI) REMARK 280 , PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.83600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.83600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.18100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.12800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.18100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.12800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.83600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.18100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.12800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.83600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.18100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.12800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -41.83600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 HIS A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 PRO A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 PRO A 86 REMARK 465 GLU A 87 REMARK 465 PRO A 116 REMARK 465 GLU A 117 REMARK 465 LYS A 118 REMARK 465 CYS A 119 REMARK 465 ARG A 227 REMARK 465 GLN A 228 REMARK 465 GLN A 229 REMARK 465 THR A 230 REMARK 465 ASN A 231 REMARK 465 ILE A 232 REMARK 465 GLU A 299 REMARK 465 GLY A 300 REMARK 465 GLU A 301 REMARK 465 GLU A 302 REMARK 465 ALA A 303 REMARK 465 PRO A 304 REMARK 465 GLU A 305 REMARK 465 SER A 357 REMARK 465 TYR A 358 REMARK 465 SER A 359 REMARK 465 GLN A 360 REMARK 465 SER A 361 REMARK 465 MET A 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 280 OE1 GLU A 327 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 -7.06 90.67 REMARK 500 SER A 55 -57.00 -128.72 REMARK 500 MET A 56 124.13 51.65 REMARK 500 ASN A 68 41.71 -108.59 REMARK 500 ASP A 89 29.48 -75.51 REMARK 500 TRP A 161 158.30 177.74 REMARK 500 THR A 190 -90.91 -113.79 REMARK 500 GLU A 216 -8.22 85.84 REMARK 500 VAL A 236 -64.07 -92.77 REMARK 500 LYS A 287 -35.56 71.07 REMARK 500 LEU A 288 115.07 18.02 REMARK 500 SER A 320 135.65 -38.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 413 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LDW RELATED DB: PDB REMARK 900 RELATED ID: 4LDX RELATED DB: PDB REMARK 900 RELATED ID: 4LDY RELATED DB: PDB DBREF 4LDV A 1 355 UNP Q8L7G0 ARFA_ARATH 1 355 SEQADV 4LDV ASN A 356 UNP Q8L7G0 EXPRESSION TAG SEQADV 4LDV SER A 357 UNP Q8L7G0 EXPRESSION TAG SEQADV 4LDV TYR A 358 UNP Q8L7G0 EXPRESSION TAG SEQADV 4LDV SER A 359 UNP Q8L7G0 EXPRESSION TAG SEQADV 4LDV GLN A 360 UNP Q8L7G0 EXPRESSION TAG SEQADV 4LDV SER A 361 UNP Q8L7G0 EXPRESSION TAG SEQADV 4LDV MET A 362 UNP Q8L7G0 EXPRESSION TAG SEQRES 1 A 362 MET ALA ALA SER ASN HIS SER SER GLY LYS PRO GLY GLY SEQRES 2 A 362 VAL LEU SER ASP ALA LEU CYS ARG GLU LEU TRP HIS ALA SEQRES 3 A 362 CYS ALA GLY PRO LEU VAL THR LEU PRO ARG GLU GLY GLU SEQRES 4 A 362 ARG VAL TYR TYR PHE PRO GLU GLY HIS MET GLU GLN LEU SEQRES 5 A 362 GLU ALA SER MET HIS GLN GLY LEU GLU GLN GLN MET PRO SEQRES 6 A 362 SER PHE ASN LEU PRO SER LYS ILE LEU CYS LYS VAL ILE SEQRES 7 A 362 ASN ILE GLN ARG ARG ALA GLU PRO GLU THR ASP GLU VAL SEQRES 8 A 362 TYR ALA GLN ILE THR LEU LEU PRO GLU LEU ASP GLN SER SEQRES 9 A 362 GLU PRO THR SER PRO ASP ALA PRO VAL GLN GLU PRO GLU SEQRES 10 A 362 LYS CYS THR VAL HIS SER PHE CYS LYS THR LEU THR ALA SEQRES 11 A 362 SER ASP THR SER THR HIS GLY GLY PHE SER VAL LEU ARG SEQRES 12 A 362 ARG HIS ALA ASP ASP CYS LEU PRO PRO LEU ASP MET SER SEQRES 13 A 362 GLN GLN PRO PRO TRP GLN GLU LEU VAL ALA THR ASP LEU SEQRES 14 A 362 HIS ASN SER GLU TRP HIS PHE ARG HIS ILE PHE ARG GLY SEQRES 15 A 362 GLN PRO ARG ARG HIS LEU LEU THR THR GLY TRP SER VAL SEQRES 16 A 362 PHE VAL SER SER LYS LYS LEU VAL ALA GLY ASP ALA PHE SEQRES 17 A 362 ILE PHE LEU ARG GLY GLU ASN GLU GLU LEU ARG VAL GLY SEQRES 18 A 362 VAL ARG ARG HIS MET ARG GLN GLN THR ASN ILE PRO SER SEQRES 19 A 362 SER VAL ILE SER SER HIS SER MET HIS ILE GLY VAL LEU SEQRES 20 A 362 ALA THR ALA ALA HIS ALA ILE THR THR GLY THR ILE PHE SEQRES 21 A 362 SER VAL PHE TYR LYS PRO ARG THR SER ARG SER GLU PHE SEQRES 22 A 362 ILE VAL SER VAL ASN ARG TYR LEU GLU ALA LYS THR GLN SEQRES 23 A 362 LYS LEU SER VAL GLY MET ARG PHE LYS MET ARG PHE GLU SEQRES 24 A 362 GLY GLU GLU ALA PRO GLU LYS ARG PHE SER GLY THR ILE SEQRES 25 A 362 VAL GLY VAL GLN GLU ASN LYS SER SER VAL TRP HIS ASP SEQRES 26 A 362 SER GLU TRP ARG SER LEU LYS VAL GLN TRP ASP GLU PRO SEQRES 27 A 362 SER SER VAL PHE ARG PRO GLU ARG VAL SER PRO TRP GLU SEQRES 28 A 362 LEU GLU PRO LEU ASN SER TYR SER GLN SER MET HET IOD A 401 1 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET CL A 408 1 HET FMT A 409 3 HET FMT A 410 3 HET FMT A 411 3 HET FMT A 412 3 HET FMT A 413 3 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION HETNAM FMT FORMIC ACID FORMUL 2 IOD I 1- FORMUL 3 CL 7(CL 1-) FORMUL 10 FMT 5(C H2 O2) FORMUL 15 HOH *298(H2 O) HELIX 1 1 SER A 16 GLY A 29 1 14 HELIX 2 2 PHE A 44 GLU A 53 1 10 HELIX 3 3 THR A 129 SER A 134 1 6 HELIX 4 4 LEU A 142 LEU A 150 1 9 HELIX 5 5 GLY A 192 LYS A 200 1 9 HELIX 6 6 SER A 238 GLY A 257 1 20 HELIX 7 7 VAL A 277 GLN A 286 1 10 HELIX 8 8 SER A 348 LEU A 352 5 5 SHEET 1 A 5 PHE A 260 TYR A 264 0 SHEET 2 A 5 VAL A 91 PRO A 99 -1 N ILE A 95 O VAL A 262 SHEET 3 A 5 ILE A 73 ALA A 84 -1 N ARG A 83 O TYR A 92 SHEET 4 A 5 ARG A 40 TYR A 43 -1 N VAL A 41 O CYS A 75 SHEET 5 A 5 ILE A 274 SER A 276 -1 O VAL A 275 N TYR A 42 SHEET 1 B 3 VAL A 121 THR A 127 0 SHEET 2 B 3 ALA A 207 GLY A 213 -1 O ARG A 212 N HIS A 122 SHEET 3 B 3 LEU A 218 GLY A 221 -1 O ARG A 219 N LEU A 211 SHEET 1 C 4 PHE A 139 VAL A 141 0 SHEET 2 C 4 ARG A 186 LEU A 189 -1 O LEU A 189 N PHE A 139 SHEET 3 C 4 GLU A 173 ARG A 181 -1 N ARG A 181 O ARG A 186 SHEET 4 C 4 TRP A 161 THR A 167 -1 N LEU A 164 O PHE A 176 SHEET 1 D 5 ARG A 346 VAL A 347 0 SHEET 2 D 5 LEU A 331 TRP A 335 -1 N LEU A 331 O VAL A 347 SHEET 3 D 5 PHE A 308 GLY A 314 -1 N VAL A 313 O LYS A 332 SHEET 4 D 5 ARG A 293 MET A 296 -1 N PHE A 294 O GLY A 310 SHEET 5 D 5 GLU A 353 PRO A 354 -1 O GLU A 353 N LYS A 295 CISPEP 1 GLN A 158 PRO A 159 0 -8.90 CISPEP 2 GLN A 183 PRO A 184 0 1.80 SITE 1 AC1 1 THR A 255 SITE 1 AC2 2 GLN A 62 ARG A 293 SITE 1 AC3 1 GLU A 37 SITE 1 AC4 2 GLU A 345 ARG A 346 SITE 1 AC5 2 SER A 276 ARG A 279 SITE 1 AC6 2 HIS A 243 TRP A 323 SITE 1 AC7 2 GLU A 163 ARG A 177 SITE 1 AC8 6 SER A 66 PHE A 67 GLN A 157 HOH A 510 SITE 2 AC8 6 HOH A 672 HOH A 752 SITE 1 AC9 5 GLN A 103 ARG A 177 ARG A 181 HOH A 504 SITE 2 AC9 5 HOH A 607 SITE 1 BC1 4 TRP A 24 HIS A 25 ARG A 82 HOH A 648 SITE 1 BC2 7 GLU A 61 GLN A 62 GLN A 63 MET A 64 SITE 2 BC2 7 HIS A 240 HOH A 557 HOH A 734 SITE 1 BC3 4 PRO A 151 ARG A 212 GLU A 216 HOH A 571 SITE 1 BC4 4 ASP A 89 LYS A 200 GLY A 221 VAL A 222 CRYST1 88.362 126.256 83.672 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011951 0.00000