HEADER HYDROLASE/IMMUNE SYSTEM 01-JUL-13 4LHJ TITLE RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 39-297; COMPND 5 SYNONYM: RICIN A CHAIN, RRNA N-GLYCOSIDASE; COMPND 6 EC: 3.2.2.22; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMELID ANTIBODY; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUTA; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 12 ORGANISM_TAXID: 30538; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: MCSG7 KEYWDS RIBOSOME INHIBITING PROTEIN, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,J.CHEUNG,M.FRANKLIN,F.BURSHTEYN,M.CASSIDY,E.GARY,N.MANTIS REVDAT 6 15-NOV-17 4LHJ 1 REMARK REVDAT 5 15-MAR-17 4LHJ 1 SOURCE REVDAT 4 20-AUG-14 4LHJ 1 JRNL REVDAT 3 30-JUL-14 4LHJ 1 JRNL REVDAT 2 02-JUL-14 4LHJ 1 JRNL REVDAT 1 11-JUN-14 4LHJ 0 JRNL AUTH M.J.RUDOLPH,D.J.VANCE,J.CHEUNG,M.C.FRANKLIN,F.BURSHTEYN, JRNL AUTH 2 M.S.CASSIDY,E.N.GARY,C.HERRERA,C.B.SHOEMAKER,N.J.MANTIS JRNL TITL CRYSTAL STRUCTURES OF RICIN TOXIN'S ENZYMATIC SUBUNIT (RTA) JRNL TITL 2 IN COMPLEX WITH NEUTRALIZING AND NON-NEUTRALIZING JRNL TITL 3 SINGLE-CHAIN ANTIBODIES. JRNL REF J.MOL.BIOL. V. 426 3057 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24907552 JRNL DOI 10.1016/J.JMB.2014.05.026 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 33366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7199 - 4.1147 0.95 2717 151 0.1909 0.2257 REMARK 3 2 4.1147 - 3.2664 0.94 2581 110 0.1644 0.2109 REMARK 3 3 3.2664 - 2.8537 1.00 2721 129 0.1762 0.2227 REMARK 3 4 2.8537 - 2.5928 1.00 2688 149 0.1861 0.2362 REMARK 3 5 2.5928 - 2.4070 1.00 2645 162 0.2036 0.2560 REMARK 3 6 2.4070 - 2.2651 0.98 2642 136 0.2055 0.2978 REMARK 3 7 2.2651 - 2.1517 0.99 2624 147 0.2177 0.3164 REMARK 3 8 2.1517 - 2.0580 1.00 2629 160 0.2037 0.2716 REMARK 3 9 2.0580 - 1.9788 1.00 2635 143 0.2178 0.2719 REMARK 3 10 1.9788 - 1.9105 1.00 2628 145 0.2556 0.3190 REMARK 3 11 1.9105 - 1.8508 1.00 2684 120 0.2812 0.3276 REMARK 3 12 1.8508 - 1.8000 0.94 2472 148 0.2808 0.3422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 38.81 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.07890 REMARK 3 B22 (A**2) : -10.22140 REMARK 3 B33 (A**2) : 6.14250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3040 REMARK 3 ANGLE : 1.631 4135 REMARK 3 CHIRALITY : 0.119 459 REMARK 3 PLANARITY : 0.010 545 REMARK 3 DIHEDRAL : 14.502 1101 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 5:18) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0092 -43.7524 23.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.3076 T22: 0.2556 REMARK 3 T33: 0.2862 T12: -0.0241 REMARK 3 T13: -0.0443 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.3700 L22: 0.7614 REMARK 3 L33: 0.2265 L12: 0.2086 REMARK 3 L13: -0.3892 L23: -0.1556 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: -0.2301 S13: -0.4333 REMARK 3 S21: 0.4251 S22: 0.0710 S23: -0.1009 REMARK 3 S31: 0.1254 S32: -0.3937 S33: 0.0131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 19:33) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7500 -35.2823 23.6234 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.2339 REMARK 3 T33: 0.2597 T12: -0.0196 REMARK 3 T13: 0.0283 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 3.6841 L22: 4.0141 REMARK 3 L33: 8.7378 L12: 0.4248 REMARK 3 L13: 2.0132 L23: 2.5240 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: -0.2894 S13: -0.1790 REMARK 3 S21: 0.1471 S22: 0.0406 S23: 0.5419 REMARK 3 S31: 0.1274 S32: -0.5980 S33: 0.1768 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 34:76) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0057 -35.3220 30.6464 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.2072 REMARK 3 T33: 0.1646 T12: -0.0353 REMARK 3 T13: 0.0096 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.9620 L22: 3.3540 REMARK 3 L33: 5.2255 L12: -0.2162 REMARK 3 L13: 0.3147 L23: 2.5744 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -0.2215 S13: 0.0305 REMARK 3 S21: 0.3906 S22: 0.0618 S23: 0.1414 REMARK 3 S31: 0.1389 S32: 0.1203 S33: -0.0901 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 77:123) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0742 -39.7797 27.7431 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.2401 REMARK 3 T33: 0.1968 T12: 0.0026 REMARK 3 T13: -0.0375 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.5700 L22: 3.2294 REMARK 3 L33: 3.8449 L12: -2.4683 REMARK 3 L13: -0.5677 L23: -0.6993 REMARK 3 S TENSOR REMARK 3 S11: -0.1651 S12: -0.5223 S13: 0.0719 REMARK 3 S21: 0.4997 S22: 0.1589 S23: -0.3398 REMARK 3 S31: 0.1669 S32: 0.2209 S33: 0.0529 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 124:157) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4486 -33.9650 11.9774 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.2020 REMARK 3 T33: 0.1501 T12: -0.0124 REMARK 3 T13: 0.0356 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.7192 L22: 4.6754 REMARK 3 L33: 2.0278 L12: 0.4591 REMARK 3 L13: 0.0788 L23: -1.0235 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: 0.1608 S13: 0.0885 REMARK 3 S21: -0.2482 S22: -0.0116 S23: -0.3595 REMARK 3 S31: 0.0005 S32: 0.0364 S33: -0.0318 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 158:175) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7146 -35.0714 13.2338 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.1743 REMARK 3 T33: 0.1908 T12: -0.0421 REMARK 3 T13: 0.0174 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 7.7816 L22: 7.5694 REMARK 3 L33: 2.6545 L12: -1.8638 REMARK 3 L13: -0.7414 L23: 0.6745 REMARK 3 S TENSOR REMARK 3 S11: -0.1351 S12: 0.0729 S13: -0.0287 REMARK 3 S21: -0.4356 S22: 0.0396 S23: -0.6147 REMARK 3 S31: -0.0058 S32: 0.2202 S33: 0.0102 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 176:263) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9396 -19.1252 23.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.1810 REMARK 3 T33: 0.3305 T12: 0.0191 REMARK 3 T13: 0.0421 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.9082 L22: 3.0897 REMARK 3 L33: 5.1797 L12: -0.4250 REMARK 3 L13: -0.1495 L23: 0.9126 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: -0.0545 S13: 0.4896 REMARK 3 S21: -0.0215 S22: 0.0439 S23: 0.0660 REMARK 3 S31: -0.7427 S32: -0.2139 S33: -0.1160 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6511 5.7434 20.8083 REMARK 3 T TENSOR REMARK 3 T11: 0.3863 T22: 0.3038 REMARK 3 T33: 0.3479 T12: 0.0155 REMARK 3 T13: 0.1481 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 4.3125 L22: 2.0312 REMARK 3 L33: 2.0550 L12: -0.4951 REMARK 3 L13: 1.3267 L23: -9.3898 REMARK 3 S TENSOR REMARK 3 S11: -0.0712 S12: -0.0372 S13: -0.4654 REMARK 3 S21: 1.1496 S22: 0.9567 S23: 1.3425 REMARK 3 S31: -0.9777 S32: -0.7869 S33: -0.7270 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 8:17) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7107 24.3307 6.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.4338 T22: 0.2927 REMARK 3 T33: 0.2595 T12: -0.0917 REMARK 3 T13: -0.1261 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.3217 L22: 5.0737 REMARK 3 L33: 7.7380 L12: -2.2339 REMARK 3 L13: 1.0058 L23: -1.9222 REMARK 3 S TENSOR REMARK 3 S11: -0.1277 S12: 0.4573 S13: 0.3946 REMARK 3 S21: 0.4326 S22: -0.0062 S23: -0.2937 REMARK 3 S31: -1.3695 S32: 0.1633 S33: 0.3473 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 18:32) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8709 4.3556 17.1473 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.2811 REMARK 3 T33: 0.3538 T12: -0.0188 REMARK 3 T13: 0.0412 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 4.3374 L22: 9.0078 REMARK 3 L33: 6.1982 L12: -1.5589 REMARK 3 L13: 0.9924 L23: -2.3263 REMARK 3 S TENSOR REMARK 3 S11: -0.1777 S12: -0.0736 S13: -0.7826 REMARK 3 S21: 0.4010 S22: -0.0628 S23: -0.2247 REMARK 3 S31: 0.1301 S32: 0.1061 S33: 0.2311 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 33:44) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0829 7.8252 4.3038 REMARK 3 T TENSOR REMARK 3 T11: 0.3012 T22: 0.3554 REMARK 3 T33: 0.3147 T12: -0.0599 REMARK 3 T13: -0.0615 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 8.0844 L22: 7.7851 REMARK 3 L33: 9.5314 L12: -4.3100 REMARK 3 L13: 3.9208 L23: -2.4104 REMARK 3 S TENSOR REMARK 3 S11: -0.1750 S12: 0.6363 S13: -0.5938 REMARK 3 S21: -0.7700 S22: 0.0239 S23: 1.0748 REMARK 3 S31: -0.0060 S32: -0.5245 S33: 0.1797 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 45:52) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6101 4.6062 4.5892 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.1708 REMARK 3 T33: 0.3019 T12: -0.0205 REMARK 3 T13: 0.0653 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 9.9975 L22: 7.9669 REMARK 3 L33: 9.7270 L12: -2.8016 REMARK 3 L13: 3.9600 L23: -1.5989 REMARK 3 S TENSOR REMARK 3 S11: 0.2336 S12: 0.6549 S13: -0.7220 REMARK 3 S21: -0.5915 S22: -0.2776 S23: 0.7641 REMARK 3 S31: 0.3280 S32: 0.2873 S33: 0.1395 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 53:63) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7311 3.6264 2.5145 REMARK 3 T TENSOR REMARK 3 T11: 0.4313 T22: 0.3761 REMARK 3 T33: 0.5017 T12: 0.0512 REMARK 3 T13: 0.2163 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 5.3290 L22: 9.4754 REMARK 3 L33: 8.8553 L12: -3.4586 REMARK 3 L13: 2.0116 L23: -6.5201 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: 0.2837 S13: -0.8242 REMARK 3 S21: -1.4713 S22: -0.4094 S23: -0.9251 REMARK 3 S31: 1.2539 S32: 0.6956 S33: 0.3643 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 64:82) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0061 9.4279 9.9922 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.2812 REMARK 3 T33: 0.3676 T12: -0.0393 REMARK 3 T13: -0.0040 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 4.6209 L22: 8.1219 REMARK 3 L33: 8.1101 L12: -0.8549 REMARK 3 L13: -1.6431 L23: -4.5318 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.1323 S13: -0.2878 REMARK 3 S21: 0.2647 S22: -0.3725 S23: -1.0738 REMARK 3 S31: -0.3140 S32: 0.8811 S33: 0.3641 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 83:107) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7953 3.7761 10.5913 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.2232 REMARK 3 T33: 0.2149 T12: -0.0032 REMARK 3 T13: 0.0228 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.2994 L22: 7.8242 REMARK 3 L33: 3.0056 L12: 0.1602 REMARK 3 L13: 0.2230 L23: -4.3563 REMARK 3 S TENSOR REMARK 3 S11: -0.1680 S12: 0.1579 S13: -0.1284 REMARK 3 S21: -0.1668 S22: -0.1532 S23: -0.7576 REMARK 3 S31: 0.0362 S32: 0.1088 S33: 0.3460 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 108:120) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1883 10.5427 10.7888 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.2017 REMARK 3 T33: 0.2343 T12: -0.0240 REMARK 3 T13: 0.0353 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 1.6195 L22: 3.4558 REMARK 3 L33: 7.5152 L12: 0.3122 REMARK 3 L13: -0.5120 L23: -0.5936 REMARK 3 S TENSOR REMARK 3 S11: -0.1357 S12: 0.0170 S13: -0.0442 REMARK 3 S21: -0.0536 S22: 0.2715 S23: 0.5131 REMARK 3 S31: 0.1002 S32: -0.4780 S33: -0.1496 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAACETATE, 200 MM NACL, 40% PEG REMARK 280 300, PH 4.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.70950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.89100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.70950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.89100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 49 OD1 ASP A 101 2.05 REMARK 500 O HOH A 441 O HOH A 469 2.05 REMARK 500 OE1 GLU A 62 OG1 THR A 72 2.12 REMARK 500 O HOH A 444 O HOH A 507 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 498 O HOH B 237 4546 1.83 REMARK 500 N LYS A 5 O LYS A 5 2645 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 256 CG - SD - CE ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 42 -2.46 76.41 REMARK 500 VAL B 48 -62.30 -107.02 REMARK 500 PRO B 104 38.14 -93.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 5 GLN A 6 -141.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LGP RELATED DB: PDB REMARK 900 RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH1) REMARK 900 RELATED ID: 4LGR RELATED DB: PDB REMARK 900 RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH3) REMARK 900 RELATED ID: 4LGS RELATED DB: PDB REMARK 900 RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH4) REMARK 900 RELATED ID: 4LHQ RELATED DB: PDB REMARK 900 RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH8) DBREF 4LHJ A 5 263 UNP P02879 RICI_RICCO 39 297 DBREF 4LHJ B 1 120 PDB 4LHJ 4LHJ 1 120 SEQRES 1 A 259 LYS GLN TYR PRO ILE ILE ASN PHE THR THR ALA GLY ALA SEQRES 2 A 259 THR VAL GLN SER TYR THR ASN PHE ILE ARG ALA VAL ARG SEQRES 3 A 259 GLY ARG LEU THR THR GLY ALA ASP VAL ARG HIS GLU ILE SEQRES 4 A 259 PRO VAL LEU PRO ASN ARG VAL GLY LEU PRO ILE ASN GLN SEQRES 5 A 259 ARG PHE ILE LEU VAL GLU LEU SER ASN HIS ALA GLU LEU SEQRES 6 A 259 SER VAL THR LEU ALA LEU ASP VAL THR ASN ALA TYR VAL SEQRES 7 A 259 VAL GLY TYR ARG ALA GLY ASN SER ALA TYR PHE PHE HIS SEQRES 8 A 259 PRO ASP ASN GLN GLU ASP ALA GLU ALA ILE THR HIS LEU SEQRES 9 A 259 PHE THR ASP VAL GLN ASN ARG TYR THR PHE ALA PHE GLY SEQRES 10 A 259 GLY ASN TYR ASP ARG LEU GLU GLN LEU ALA GLY ASN LEU SEQRES 11 A 259 ARG GLU ASN ILE GLU LEU GLY ASN GLY PRO LEU GLU GLU SEQRES 12 A 259 ALA ILE SER ALA LEU TYR TYR TYR SER THR GLY GLY THR SEQRES 13 A 259 GLN LEU PRO THR LEU ALA ARG SER PHE ILE ILE CYS ILE SEQRES 14 A 259 GLN MET ILE SER GLU ALA ALA ARG PHE GLN TYR ILE GLU SEQRES 15 A 259 GLY GLU MET ARG THR ARG ILE ARG TYR ASN ARG ARG SER SEQRES 16 A 259 ALA PRO ASP PRO SER VAL ILE THR LEU GLU ASN SER TRP SEQRES 17 A 259 GLY ARG LEU SER THR ALA ILE GLN GLU SER ASN GLN GLY SEQRES 18 A 259 ALA PHE ALA SER PRO ILE GLN LEU GLN ARG ARG ASN GLY SEQRES 19 A 259 SER LYS PHE SER VAL TYR ASP VAL SER ILE LEU ILE PRO SEQRES 20 A 259 ILE ILE ALA LEU MET VAL TYR ARG CYS ALA PRO PRO SEQRES 1 B 120 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 120 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 120 SER ILE VAL ASN PHE GLU THR MET GLY TRP TYR ARG GLN SEQRES 4 B 120 ALA PRO GLY LYS GLU ARG GLU LEU VAL ALA THR ILE THR SEQRES 5 B 120 ASN GLU GLY SER SER ASN TYR ALA ASP SER VAL LYS GLY SEQRES 6 B 120 ARG PHE THR ILE SER GLY ASP ASN ALA LYS ASN THR VAL SEQRES 7 B 120 SER LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 120 VAL TYR TYR CYS SER ALA THR PHE GLY SER ARG TRP PRO SEQRES 9 B 120 TYR ALA HIS SER ASP HIS TRP GLY GLN GLY THR GLN VAL SEQRES 10 B 120 THR VAL SER HET CL A 301 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *221(H2 O) HELIX 1 1 THR A 18 THR A 34 1 17 HELIX 2 2 PRO A 53 GLN A 56 5 4 HELIX 3 3 ASN A 98 THR A 106 1 9 HELIX 4 4 ASN A 123 GLY A 132 1 10 HELIX 5 5 LEU A 134 ILE A 138 5 5 HELIX 6 6 GLY A 141 SER A 156 1 16 HELIX 7 7 GLN A 161 ILE A 176 1 16 HELIX 8 8 ILE A 176 PHE A 182 1 7 HELIX 9 9 PHE A 182 TYR A 195 1 14 HELIX 10 10 ASP A 202 GLU A 221 1 20 HELIX 11 11 SER A 247 ILE A 250 5 4 HELIX 12 12 ASP B 61 LYS B 64 5 4 HELIX 13 13 LYS B 86 THR B 90 5 5 SHEET 1 A 6 ILE A 9 THR A 13 0 SHEET 2 A 6 PHE A 58 SER A 64 1 O GLU A 62 N ILE A 10 SHEET 3 A 6 SER A 70 ASP A 76 -1 O VAL A 71 N LEU A 63 SHEET 4 A 6 VAL A 82 ALA A 87 -1 O GLY A 84 N ALA A 74 SHEET 5 A 6 SER A 90 PHE A 93 -1 O TYR A 92 N TYR A 85 SHEET 6 A 6 ASN A 114 THR A 117 1 O TYR A 116 N ALA A 91 SHEET 1 B 2 VAL A 39 ARG A 40 0 SHEET 2 B 2 ILE A 43 PRO A 44 -1 O ILE A 43 N ARG A 40 SHEET 1 C 3 ALA A 226 ALA A 228 0 SHEET 2 C 3 LYS A 240 ASP A 245 -1 O TYR A 244 N PHE A 227 SHEET 3 C 3 ILE A 231 GLN A 234 -1 N LEU A 233 O PHE A 241 SHEET 1 D 4 GLN B 3 SER B 7 0 SHEET 2 D 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 D 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 D 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 E 6 GLY B 10 GLN B 13 0 SHEET 2 E 6 THR B 115 SER B 120 1 O THR B 118 N VAL B 12 SHEET 3 E 6 ALA B 91 PHE B 99 -1 N ALA B 91 O VAL B 117 SHEET 4 E 6 THR B 33 GLN B 39 -1 N TYR B 37 O TYR B 94 SHEET 5 E 6 GLU B 46 THR B 52 -1 O ALA B 49 N TRP B 36 SHEET 6 E 6 SER B 57 TYR B 59 -1 O ASN B 58 N THR B 50 SHEET 1 F 4 GLY B 10 GLN B 13 0 SHEET 2 F 4 THR B 115 SER B 120 1 O THR B 118 N VAL B 12 SHEET 3 F 4 ALA B 91 PHE B 99 -1 N ALA B 91 O VAL B 117 SHEET 4 F 4 SER B 108 TRP B 111 -1 O SER B 108 N PHE B 99 SSBOND 1 CYS B 22 CYS B 95 1555 1555 2.06 CISPEP 1 TRP B 103 PRO B 104 0 0.78 SITE 1 AC1 1 GLY A 121 CRYST1 81.419 103.782 42.086 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023761 0.00000