data_4LKP # _entry.id 4LKP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4LKP RCSB RCSB080750 WWPDB D_1000080750 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4LKT _pdbx_database_related.details 'Crystal Structure of Human Epidermal Fatty Acid Binding Protein (FABP5) in Complex with Linoleic Acid' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4LKP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-07-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Armstrong, E.H.' 1 'Ortlund, E.A.' 2 # _citation.id primary _citation.title ;Structural basis for ligand regulation of the fatty acid-binding protein 5, peroxisome proliferator-activated receptor beta / delta (FABP5-PPAR beta / delta ) signaling pathway. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 289 _citation.page_first 14941 _citation.page_last 14954 _citation.year 2014 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24692551 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.514646 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Armstrong, E.H.' 1 primary 'Goswami, D.' 2 primary 'Griffin, P.R.' 3 primary 'Noy, N.' 4 primary 'Ortlund, E.A.' 5 # _cell.length_a 62.971 _cell.length_b 62.971 _cell.length_c 74.498 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4LKP _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 4LKP _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fatty acid-binding protein, epidermal' 15457.715 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 2 ? ? ? ? 4 non-polymer syn 'AMMONIUM ION' 18.038 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 111 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Epidermal-type fatty acid-binding protein, E-FABP, Fatty acid-binding protein 5, Psoriasis-associated fatty acid-binding protein homolog, PA-FABP ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNAMATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETT ADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETT ADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MET n 1 5 ALA n 1 6 THR n 1 7 VAL n 1 8 GLN n 1 9 GLN n 1 10 LEU n 1 11 GLU n 1 12 GLY n 1 13 ARG n 1 14 TRP n 1 15 ARG n 1 16 LEU n 1 17 VAL n 1 18 ASP n 1 19 SER n 1 20 LYS n 1 21 GLY n 1 22 PHE n 1 23 ASP n 1 24 GLU n 1 25 TYR n 1 26 MET n 1 27 LYS n 1 28 GLU n 1 29 LEU n 1 30 GLY n 1 31 VAL n 1 32 GLY n 1 33 ILE n 1 34 ALA n 1 35 LEU n 1 36 ARG n 1 37 LYS n 1 38 MET n 1 39 GLY n 1 40 ALA n 1 41 MET n 1 42 ALA n 1 43 LYS n 1 44 PRO n 1 45 ASP n 1 46 CYS n 1 47 ILE n 1 48 ILE n 1 49 THR n 1 50 CYS n 1 51 ASP n 1 52 GLY n 1 53 LYS n 1 54 ASN n 1 55 LEU n 1 56 THR n 1 57 ILE n 1 58 LYS n 1 59 THR n 1 60 GLU n 1 61 SER n 1 62 THR n 1 63 LEU n 1 64 LYS n 1 65 THR n 1 66 THR n 1 67 GLN n 1 68 PHE n 1 69 SER n 1 70 CYS n 1 71 THR n 1 72 LEU n 1 73 GLY n 1 74 GLU n 1 75 LYS n 1 76 PHE n 1 77 GLU n 1 78 GLU n 1 79 THR n 1 80 THR n 1 81 ALA n 1 82 ASP n 1 83 GLY n 1 84 ARG n 1 85 LYS n 1 86 THR n 1 87 GLN n 1 88 THR n 1 89 VAL n 1 90 CYS n 1 91 ASN n 1 92 PHE n 1 93 THR n 1 94 ASP n 1 95 GLY n 1 96 ALA n 1 97 LEU n 1 98 VAL n 1 99 GLN n 1 100 HIS n 1 101 GLN n 1 102 GLU n 1 103 TRP n 1 104 ASP n 1 105 GLY n 1 106 LYS n 1 107 GLU n 1 108 SER n 1 109 THR n 1 110 ILE n 1 111 THR n 1 112 ARG n 1 113 LYS n 1 114 LEU n 1 115 LYS n 1 116 ASP n 1 117 GLY n 1 118 LYS n 1 119 LEU n 1 120 VAL n 1 121 VAL n 1 122 GLU n 1 123 CYS n 1 124 VAL n 1 125 MET n 1 126 ASN n 1 127 ASN n 1 128 VAL n 1 129 THR n 1 130 CYS n 1 131 THR n 1 132 ARG n 1 133 ILE n 1 134 TYR n 1 135 GLU n 1 136 LYS n 1 137 VAL n 1 138 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene FABP5 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FABP5_HUMAN _struct_ref.pdbx_db_accession Q01469 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADG RKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LKP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q01469 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 135 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 135 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4LKP SER A 1 ? UNP Q01469 ? ? 'EXPRESSION TAG' -2 1 1 4LKP ASN A 2 ? UNP Q01469 ? ? 'EXPRESSION TAG' -1 2 1 4LKP ALA A 3 ? UNP Q01469 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH4 non-polymer . 'AMMONIUM ION' ? 'H4 N 1' 18.038 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4LKP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2.0M ammonium sulfate, 300mM Na/K tartrate, 100mM Na citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2009-12-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 4LKP _reflns.d_resolution_high 1.670 _reflns.d_resolution_low 50.000 _reflns.number_obs 18056 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_netI_over_sigmaI 21.100 _reflns.pdbx_chi_squared 1.113 _reflns.pdbx_redundancy 9.100 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.number_all 18056 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.670 1.730 ? ? ? 0.389 ? ? 1.178 6.800 ? 1744 99.400 1 1 1.730 1.800 ? ? ? 0.275 ? ? 1.209 8.700 ? 1777 99.800 2 1 1.800 1.880 ? ? ? 0.198 ? ? 1.153 9.400 ? 1770 100.000 3 1 1.880 1.980 ? ? ? 0.125 ? ? 1.177 9.600 ? 1748 100.000 4 1 1.980 2.100 ? ? ? 0.093 ? ? 1.223 9.600 ? 1797 100.000 5 1 2.100 2.270 ? ? ? 0.074 ? ? 1.230 9.600 ? 1777 100.000 6 1 2.270 2.490 ? ? ? 0.054 ? ? 1.153 9.500 ? 1810 100.000 7 1 2.490 2.860 ? ? ? 0.042 ? ? 1.092 9.500 ? 1814 100.000 8 1 2.860 3.600 ? ? ? 0.029 ? ? 0.966 9.400 ? 1841 99.900 9 1 3.600 50.000 ? ? ? 0.024 ? ? 0.789 8.800 ? 1978 99.900 10 1 # _refine.entry_id 4LKP _refine.ls_d_res_high 1.67 _refine.ls_d_res_low 48.0920 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9200 _refine.ls_number_reflns_obs 18008 _refine.ls_number_reflns_all 18034 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1826 _refine.ls_R_factor_R_work 0.1810 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2145 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 918 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 20.9284 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1600 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8580 _refine.B_iso_max 71.630 _refine.B_iso_min 6.310 _refine.pdbx_overall_phase_error 20.2900 _refine.occupancy_max 1.000 _refine.occupancy_min 0.220 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1047 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1173 _refine_hist.d_res_high 1.67 _refine_hist.d_res_low 48.0920 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1128 0.015 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1528 1.825 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 178 0.127 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 193 0.008 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 440 15.595 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.67 1.7574 7 100.0000 2382 . 0.2345 0.3127 . 128 . 2510 2510 . 'X-RAY DIFFRACTION' 1.7574 1.8675 7 100.0000 2363 . 0.2071 0.2476 . 146 . 2509 2509 . 'X-RAY DIFFRACTION' 1.8675 2.0117 7 100.0000 2396 . 0.1791 0.2319 . 141 . 2537 2537 . 'X-RAY DIFFRACTION' 2.0117 2.2141 7 100.0000 2394 . 0.1729 0.2208 . 150 . 2544 2544 . 'X-RAY DIFFRACTION' 2.2141 2.5345 7 100.0000 2442 . 0.1774 0.2095 . 120 . 2562 2562 . 'X-RAY DIFFRACTION' 2.5345 3.1931 7 100.0000 2484 . 0.1939 0.2253 . 110 . 2594 2594 . 'X-RAY DIFFRACTION' 3.1931 48.1121 7 100.0000 2629 . 0.1686 0.1870 . 123 . 2752 2752 . 'X-RAY DIFFRACTION' # _struct.entry_id 4LKP _struct.title 'Crystal Structure of Apo Human Epidermal Fatty Acid Binding Protein (FABP5)' _struct.pdbx_descriptor 'Fatty acid-binding protein, epidermal' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LKP _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'Beta Barrel, Beta Clam, Fatty Acid Binding Protein, Fatty Acids, Nucleus, LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 6 ? GLU A 11 ? THR A 3 GLU A 8 5 ? 6 HELX_P HELX_P2 2 GLY A 21 ? GLY A 30 ? GLY A 18 GLY A 27 1 ? 10 HELX_P HELX_P3 3 GLY A 32 ? ALA A 42 ? GLY A 29 ALA A 39 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 123 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 130 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id B _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 120 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 127 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 65 ? THR A 71 ? THR A 62 THR A 68 A 2 ASN A 54 ? GLU A 60 ? ASN A 51 GLU A 57 A 3 ASP A 45 ? ASP A 51 ? ASP A 42 ASP A 48 A 4 GLY A 12 ? LYS A 20 ? GLY A 9 LYS A 17 A 5 VAL A 128 ? LYS A 136 ? VAL A 125 LYS A 133 A 6 LYS A 118 ? MET A 125 ? LYS A 115 MET A 122 A 7 LYS A 106 ? LYS A 115 ? LYS A 103 LYS A 112 A 8 ALA A 96 ? TRP A 103 ? ALA A 93 TRP A 100 A 9 LYS A 85 ? THR A 93 ? LYS A 82 THR A 90 A 10 PHE A 76 ? THR A 79 ? PHE A 73 THR A 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 66 ? O THR A 63 N THR A 59 ? N THR A 56 A 2 3 O LYS A 58 ? O LYS A 55 N ILE A 47 ? N ILE A 44 A 3 4 O CYS A 46 ? O CYS A 43 N TRP A 14 ? N TRP A 11 A 4 5 N VAL A 17 ? N VAL A 14 O ILE A 133 ? O ILE A 130 A 5 6 O ARG A 132 ? O ARG A 129 N VAL A 121 ? N VAL A 118 A 6 7 O VAL A 120 ? O VAL A 117 N LYS A 113 ? N LYS A 110 A 7 8 O SER A 108 ? O SER A 105 N GLN A 101 ? N GLN A 98 A 8 9 O VAL A 98 ? O VAL A 95 N ASN A 91 ? N ASN A 88 A 9 10 O THR A 88 ? O THR A 85 N PHE A 76 ? N PHE A 73 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 201' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE DMS A 202' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE DMS A 203' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NH4 A 204' AC5 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 LYS A 113 ? LYS A 110 . ? 1_555 ? 2 AC1 2 LYS A 115 ? LYS A 112 . ? 1_555 ? 3 AC2 7 LYS A 27 ? LYS A 24 . ? 6_445 ? 4 AC2 7 THR A 49 ? THR A 46 . ? 1_555 ? 5 AC2 7 ASP A 51 ? ASP A 48 . ? 1_555 ? 6 AC2 7 LEU A 55 ? LEU A 52 . ? 1_555 ? 7 AC2 7 THR A 56 ? THR A 53 . ? 1_555 ? 8 AC2 7 HOH G . ? HOH A 316 . ? 1_555 ? 9 AC2 7 HOH G . ? HOH A 356 . ? 6_445 ? 10 AC3 7 LYS A 75 ? LYS A 72 . ? 4_545 ? 11 AC3 7 PHE A 76 ? PHE A 73 . ? 4_545 ? 12 AC3 7 GLU A 77 ? GLU A 74 . ? 4_545 ? 13 AC3 7 THR A 111 ? THR A 108 . ? 1_555 ? 14 AC3 7 GLU A 122 ? GLU A 119 . ? 1_555 ? 15 AC3 7 VAL A 124 ? VAL A 121 . ? 1_555 ? 16 AC3 7 HOH G . ? HOH A 346 . ? 1_555 ? 17 AC4 3 LYS A 20 ? LYS A 17 . ? 1_555 ? 18 AC4 3 GLY A 21 ? GLY A 18 . ? 1_555 ? 19 AC4 3 SO4 F . ? SO4 A 205 . ? 1_555 ? 20 AC5 8 SER A 19 ? SER A 16 . ? 1_555 ? 21 AC5 8 LYS A 20 ? LYS A 17 . ? 1_555 ? 22 AC5 8 GLY A 21 ? GLY A 18 . ? 1_555 ? 23 AC5 8 PHE A 22 ? PHE A 19 . ? 1_555 ? 24 AC5 8 ASP A 23 ? ASP A 20 . ? 1_555 ? 25 AC5 8 NH4 E . ? NH4 A 204 . ? 1_555 ? 26 AC5 8 HOH G . ? HOH A 340 . ? 1_555 ? 27 AC5 8 HOH G . ? HOH A 375 . ? 1_555 ? # _atom_sites.entry_id 4LKP _atom_sites.fract_transf_matrix[1][1] 0.015880 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015880 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013423 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 THR 6 3 3 THR THR A . n A 1 7 VAL 7 4 4 VAL VAL A . n A 1 8 GLN 8 5 5 GLN GLN A . n A 1 9 GLN 9 6 6 GLN GLN A . n A 1 10 LEU 10 7 7 LEU LEU A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 GLY 12 9 9 GLY GLY A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 TRP 14 11 11 TRP TRP A . n A 1 15 ARG 15 12 12 ARG ARG A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 VAL 17 14 14 VAL VAL A . n A 1 18 ASP 18 15 15 ASP ASP A . n A 1 19 SER 19 16 16 SER SER A . n A 1 20 LYS 20 17 17 LYS LYS A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 PHE 22 19 19 PHE PHE A . n A 1 23 ASP 23 20 20 ASP ASP A . n A 1 24 GLU 24 21 21 GLU GLU A . n A 1 25 TYR 25 22 22 TYR TYR A . n A 1 26 MET 26 23 23 MET MET A . n A 1 27 LYS 27 24 24 LYS LYS A . n A 1 28 GLU 28 25 25 GLU GLU A . n A 1 29 LEU 29 26 26 LEU LEU A . n A 1 30 GLY 30 27 27 GLY GLY A . n A 1 31 VAL 31 28 28 VAL VAL A . n A 1 32 GLY 32 29 29 GLY GLY A . n A 1 33 ILE 33 30 30 ILE ILE A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 ARG 36 33 33 ARG ARG A . n A 1 37 LYS 37 34 34 LYS LYS A . n A 1 38 MET 38 35 35 MET MET A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 ALA 40 37 37 ALA ALA A . n A 1 41 MET 41 38 38 MET MET A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 LYS 43 40 40 LYS LYS A . n A 1 44 PRO 44 41 41 PRO PRO A . n A 1 45 ASP 45 42 42 ASP ASP A . n A 1 46 CYS 46 43 43 CYS CYS A . n A 1 47 ILE 47 44 44 ILE ILE A . n A 1 48 ILE 48 45 45 ILE ILE A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 CYS 50 47 47 CYS CYS A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 GLY 52 49 49 GLY GLY A . n A 1 53 LYS 53 50 50 LYS LYS A . n A 1 54 ASN 54 51 51 ASN ASN A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 THR 56 53 53 THR THR A . n A 1 57 ILE 57 54 54 ILE ILE A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 THR 59 56 56 THR THR A . n A 1 60 GLU 60 57 57 GLU GLU A . n A 1 61 SER 61 58 58 SER SER A . n A 1 62 THR 62 59 59 THR THR A . n A 1 63 LEU 63 60 60 LEU LEU A . n A 1 64 LYS 64 61 61 LYS LYS A . n A 1 65 THR 65 62 62 THR THR A . n A 1 66 THR 66 63 63 THR THR A . n A 1 67 GLN 67 64 64 GLN GLN A . n A 1 68 PHE 68 65 65 PHE PHE A . n A 1 69 SER 69 66 66 SER SER A . n A 1 70 CYS 70 67 67 CYS CYS A . n A 1 71 THR 71 68 68 THR THR A . n A 1 72 LEU 72 69 69 LEU LEU A . n A 1 73 GLY 73 70 70 GLY GLY A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 LYS 75 72 72 LYS LYS A . n A 1 76 PHE 76 73 73 PHE PHE A . n A 1 77 GLU 77 74 74 GLU GLU A . n A 1 78 GLU 78 75 75 GLU GLU A . n A 1 79 THR 79 76 76 THR THR A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 ALA 81 78 78 ALA ALA A . n A 1 82 ASP 82 79 79 ASP ASP A . n A 1 83 GLY 83 80 80 GLY GLY A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 LYS 85 82 82 LYS LYS A . n A 1 86 THR 86 83 83 THR THR A . n A 1 87 GLN 87 84 84 GLN GLN A . n A 1 88 THR 88 85 85 THR THR A . n A 1 89 VAL 89 86 86 VAL VAL A . n A 1 90 CYS 90 87 87 CYS CYS A . n A 1 91 ASN 91 88 88 ASN ASN A . n A 1 92 PHE 92 89 89 PHE PHE A . n A 1 93 THR 93 90 90 THR THR A . n A 1 94 ASP 94 91 91 ASP ASP A . n A 1 95 GLY 95 92 92 GLY GLY A . n A 1 96 ALA 96 93 93 ALA ALA A . n A 1 97 LEU 97 94 94 LEU LEU A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 GLN 99 96 96 GLN GLN A . n A 1 100 HIS 100 97 97 HIS HIS A . n A 1 101 GLN 101 98 98 GLN GLN A . n A 1 102 GLU 102 99 99 GLU GLU A . n A 1 103 TRP 103 100 100 TRP TRP A . n A 1 104 ASP 104 101 101 ASP ASP A . n A 1 105 GLY 105 102 102 GLY GLY A . n A 1 106 LYS 106 103 103 LYS LYS A . n A 1 107 GLU 107 104 104 GLU GLU A . n A 1 108 SER 108 105 105 SER SER A . n A 1 109 THR 109 106 106 THR THR A . n A 1 110 ILE 110 107 107 ILE ILE A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 ARG 112 109 109 ARG ARG A . n A 1 113 LYS 113 110 110 LYS LYS A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 LYS 115 112 112 LYS LYS A . n A 1 116 ASP 116 113 113 ASP ASP A . n A 1 117 GLY 117 114 114 GLY GLY A . n A 1 118 LYS 118 115 115 LYS LYS A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 VAL 120 117 117 VAL VAL A . n A 1 121 VAL 121 118 118 VAL VAL A . n A 1 122 GLU 122 119 119 GLU GLU A . n A 1 123 CYS 123 120 120 CYS CYS A . n A 1 124 VAL 124 121 121 VAL VAL A . n A 1 125 MET 125 122 122 MET MET A . n A 1 126 ASN 126 123 123 ASN ASN A . n A 1 127 ASN 127 124 124 ASN ASN A . n A 1 128 VAL 128 125 125 VAL VAL A . n A 1 129 THR 129 126 126 THR THR A . n A 1 130 CYS 130 127 127 CYS CYS A . n A 1 131 THR 131 128 128 THR THR A . n A 1 132 ARG 132 129 129 ARG ARG A . n A 1 133 ILE 133 130 130 ILE ILE A . n A 1 134 TYR 134 131 131 TYR TYR A . n A 1 135 GLU 135 132 132 GLU GLU A . n A 1 136 LYS 136 133 133 LYS LYS A . n A 1 137 VAL 137 134 134 VAL VAL A . n A 1 138 GLU 138 135 135 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 201 1 CL CL A . C 3 DMS 1 202 2 DMS DMS A . D 3 DMS 1 203 3 DMS DMS A . E 4 NH4 1 204 4 NH4 NH4 A . F 5 SO4 1 205 5 SO4 SO4 A . G 6 HOH 1 301 1 HOH HOH A . G 6 HOH 2 302 2 HOH HOH A . G 6 HOH 3 303 3 HOH HOH A . G 6 HOH 4 304 4 HOH HOH A . G 6 HOH 5 305 5 HOH HOH A . G 6 HOH 6 306 6 HOH HOH A . G 6 HOH 7 307 7 HOH HOH A . G 6 HOH 8 308 8 HOH HOH A . G 6 HOH 9 309 9 HOH HOH A . G 6 HOH 10 310 10 HOH HOH A . G 6 HOH 11 311 11 HOH HOH A . G 6 HOH 12 312 12 HOH HOH A . G 6 HOH 13 313 13 HOH HOH A . G 6 HOH 14 314 14 HOH HOH A . G 6 HOH 15 315 15 HOH HOH A . G 6 HOH 16 316 16 HOH HOH A . G 6 HOH 17 317 17 HOH HOH A . G 6 HOH 18 318 18 HOH HOH A . G 6 HOH 19 319 19 HOH HOH A . G 6 HOH 20 320 20 HOH HOH A . G 6 HOH 21 321 21 HOH HOH A . G 6 HOH 22 322 22 HOH HOH A . G 6 HOH 23 323 23 HOH HOH A . G 6 HOH 24 324 24 HOH HOH A . G 6 HOH 25 325 25 HOH HOH A . G 6 HOH 26 326 26 HOH HOH A . G 6 HOH 27 327 27 HOH HOH A . G 6 HOH 28 328 28 HOH HOH A . G 6 HOH 29 329 29 HOH HOH A . G 6 HOH 30 330 30 HOH HOH A . G 6 HOH 31 331 31 HOH HOH A . G 6 HOH 32 332 32 HOH HOH A . G 6 HOH 33 333 33 HOH HOH A . G 6 HOH 34 334 34 HOH HOH A . G 6 HOH 35 335 35 HOH HOH A . G 6 HOH 36 336 36 HOH HOH A . G 6 HOH 37 337 37 HOH HOH A . G 6 HOH 38 338 38 HOH HOH A . G 6 HOH 39 339 39 HOH HOH A . G 6 HOH 40 340 40 HOH HOH A . G 6 HOH 41 341 41 HOH HOH A . G 6 HOH 42 342 42 HOH HOH A . G 6 HOH 43 343 43 HOH HOH A . G 6 HOH 44 344 44 HOH HOH A . G 6 HOH 45 345 45 HOH HOH A . G 6 HOH 46 346 46 HOH HOH A . G 6 HOH 47 347 47 HOH HOH A . G 6 HOH 48 348 48 HOH HOH A . G 6 HOH 49 349 49 HOH HOH A . G 6 HOH 50 350 50 HOH HOH A . G 6 HOH 51 351 51 HOH HOH A . G 6 HOH 52 352 52 HOH HOH A . G 6 HOH 53 353 53 HOH HOH A . G 6 HOH 54 354 54 HOH HOH A . G 6 HOH 55 355 55 HOH HOH A . G 6 HOH 56 356 56 HOH HOH A . G 6 HOH 57 357 57 HOH HOH A . G 6 HOH 58 358 58 HOH HOH A . G 6 HOH 59 359 59 HOH HOH A . G 6 HOH 60 360 60 HOH HOH A . G 6 HOH 61 361 61 HOH HOH A . G 6 HOH 62 362 62 HOH HOH A . G 6 HOH 63 363 63 HOH HOH A . G 6 HOH 64 364 64 HOH HOH A . G 6 HOH 65 365 65 HOH HOH A . G 6 HOH 66 366 66 HOH HOH A . G 6 HOH 67 367 67 HOH HOH A . G 6 HOH 68 368 68 HOH HOH A . G 6 HOH 69 369 69 HOH HOH A . G 6 HOH 70 370 70 HOH HOH A . G 6 HOH 71 371 71 HOH HOH A . G 6 HOH 72 372 72 HOH HOH A . G 6 HOH 73 373 73 HOH HOH A . G 6 HOH 74 374 74 HOH HOH A . G 6 HOH 75 375 75 HOH HOH A . G 6 HOH 76 376 76 HOH HOH A . G 6 HOH 77 377 77 HOH HOH A . G 6 HOH 78 378 78 HOH HOH A . G 6 HOH 79 379 79 HOH HOH A . G 6 HOH 80 380 80 HOH HOH A . G 6 HOH 81 381 81 HOH HOH A . G 6 HOH 82 382 82 HOH HOH A . G 6 HOH 83 383 83 HOH HOH A . G 6 HOH 84 384 84 HOH HOH A . G 6 HOH 85 385 85 HOH HOH A . G 6 HOH 86 386 86 HOH HOH A . G 6 HOH 87 387 87 HOH HOH A . G 6 HOH 88 388 88 HOH HOH A . G 6 HOH 89 389 89 HOH HOH A . G 6 HOH 90 390 90 HOH HOH A . G 6 HOH 91 391 91 HOH HOH A . G 6 HOH 92 392 92 HOH HOH A . G 6 HOH 93 393 93 HOH HOH A . G 6 HOH 94 394 94 HOH HOH A . G 6 HOH 95 395 95 HOH HOH A . G 6 HOH 96 396 96 HOH HOH A . G 6 HOH 97 397 97 HOH HOH A . G 6 HOH 98 398 98 HOH HOH A . G 6 HOH 99 399 99 HOH HOH A . G 6 HOH 100 400 100 HOH HOH A . G 6 HOH 101 401 101 HOH HOH A . G 6 HOH 102 402 102 HOH HOH A . G 6 HOH 103 403 103 HOH HOH A . G 6 HOH 104 404 104 HOH HOH A . G 6 HOH 105 405 105 HOH HOH A . G 6 HOH 106 406 106 HOH HOH A . G 6 HOH 107 407 107 HOH HOH A . G 6 HOH 108 408 108 HOH HOH A . G 6 HOH 109 409 109 HOH HOH A . G 6 HOH 110 410 110 HOH HOH A . G 6 HOH 111 411 111 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-26 2 'Structure model' 1 1 2016-04-13 3 'Structure model' 1 2 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_phasing_MR.entry_id 4LKP _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 41.800 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 48.090 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 48.090 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.4 'Thu Nov 13 10:53:32 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.8_1069 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 368 ? ? O A HOH 397 ? ? 2.05 2 1 O A HOH 371 ? ? O A HOH 399 ? ? 2.09 3 1 O A HOH 348 ? ? O A HOH 401 ? ? 2.16 4 1 O A HOH 364 ? ? O A HOH 400 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CG A MET 35 ? ? 1_555 SD A MET 35 ? ? 7_555 2.06 2 1 O A HOH 396 ? ? 1_555 O A HOH 398 ? ? 7_555 2.10 3 1 O A HOH 377 ? ? 1_555 O A HOH 385 ? ? 6_545 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 120 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 B _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 120 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 B _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 120 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 120.94 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 6.74 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MET 1 ? A MET 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'DIMETHYL SULFOXIDE' DMS 4 'AMMONIUM ION' NH4 5 'SULFATE ION' SO4 6 water HOH #