HEADER HYDROLASE 10-JUL-13 4LMD TITLE CRYSTAL STRUCTURE OF THE JCV LARGE T-ANTIGEN ORIGIN BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LARGE T ANTIGEN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ORIGIN BINDING DOMAIN (UNP RESIDUES 132-261); COMPND 5 SYNONYM: LT, LT-AG; COMPND 6 EC: 3.6.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JC POLYOMAVIRUS; SOURCE 3 ORGANISM_COMMON: JCPYV; SOURCE 4 ORGANISM_TAXID: 10632; SOURCE 5 GENE: LARGE T ANTIGEN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T KEYWDS ORIGIN BINDING DOMAIN, DNA REPLICATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MEINKE,A.BOHM,P.BULLOCK REVDAT 2 28-FEB-24 4LMD 1 REMARK SEQADV REVDAT 1 02-APR-14 4LMD 0 JRNL AUTH G.MEINKE,P.J.PHELAN,R.KALEKAR,J.SHIN,J.ARCHAMBAULT,A.BOHM, JRNL AUTH 2 P.A.BULLOCK JRNL TITL INSIGHTS INTO THE INITIATION OF JC VIRUS DNA REPLICATION JRNL TITL 2 DERIVED FROM THE CRYSTAL STRUCTURE OF THE T-ANTIGEN ORIGIN JRNL TITL 3 BINDING DOMAIN. JRNL REF PLOS PATHOG. V. 10 03966 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 24586168 JRNL DOI 10.1371/JOURNAL.PPAT.1003966 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 50601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0761 - 3.9985 1.00 2708 160 0.1536 0.1729 REMARK 3 2 3.9985 - 3.1742 1.00 2627 147 0.1436 0.1847 REMARK 3 3 3.1742 - 2.7731 1.00 2618 157 0.1699 0.2051 REMARK 3 4 2.7731 - 2.5196 1.00 2617 123 0.1733 0.2102 REMARK 3 5 2.5196 - 2.3391 1.00 2598 128 0.1667 0.2067 REMARK 3 6 2.3391 - 2.2012 1.00 2599 139 0.1498 0.2061 REMARK 3 7 2.2012 - 2.0909 1.00 2572 151 0.1580 0.2084 REMARK 3 8 2.0909 - 1.9999 1.00 2609 132 0.1640 0.1991 REMARK 3 9 1.9999 - 1.9229 1.00 2574 154 0.1694 0.1940 REMARK 3 10 1.9229 - 1.8566 1.00 2565 128 0.1739 0.2056 REMARK 3 11 1.8566 - 1.7985 1.00 2574 132 0.1756 0.2045 REMARK 3 12 1.7985 - 1.7471 0.99 2576 135 0.1875 0.2482 REMARK 3 13 1.7471 - 1.7011 0.99 2556 133 0.1967 0.2493 REMARK 3 14 1.7011 - 1.6596 0.99 2573 135 0.2122 0.2501 REMARK 3 15 1.6596 - 1.6219 0.99 2526 130 0.2481 0.2740 REMARK 3 16 1.6219 - 1.5874 0.98 2503 164 0.2391 0.3088 REMARK 3 17 1.5874 - 1.5556 0.93 2380 109 0.2453 0.2816 REMARK 3 18 1.5556 - 1.5263 0.87 2249 123 0.2573 0.2536 REMARK 3 19 1.5263 - 1.4990 0.78 1979 118 0.2682 0.2725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2332 REMARK 3 ANGLE : 1.529 3180 REMARK 3 CHIRALITY : 0.113 334 REMARK 3 PLANARITY : 0.008 415 REMARK 3 DIHEDRAL : 14.919 875 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 134:214) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7395 29.6069 19.8569 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1639 REMARK 3 T33: 0.1327 T12: -0.0043 REMARK 3 T13: -0.0098 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.9756 L22: 1.5709 REMARK 3 L33: 1.1717 L12: 0.4743 REMARK 3 L13: -0.4800 L23: -0.3685 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0915 S13: 0.0455 REMARK 3 S21: 0.0039 S22: 0.0027 S23: -0.0832 REMARK 3 S31: -0.0280 S32: 0.1088 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 215:261) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2021 22.0554 22.0073 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1637 REMARK 3 T33: 0.1719 T12: -0.0059 REMARK 3 T13: 0.0150 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.5490 L22: 0.5654 REMARK 3 L33: 1.5862 L12: -0.7580 REMARK 3 L13: 0.2598 L23: -0.2991 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -0.0259 S13: -0.0326 REMARK 3 S21: -0.0245 S22: -0.0347 S23: 0.0394 REMARK 3 S31: 0.0406 S32: -0.0124 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 133:229) REMARK 3 ORIGIN FOR THE GROUP (A): 56.9457 39.2596 0.7462 REMARK 3 T TENSOR REMARK 3 T11: 0.1665 T22: 0.1651 REMARK 3 T33: 0.1935 T12: -0.0337 REMARK 3 T13: -0.0071 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.7944 L22: 0.8714 REMARK 3 L33: 2.2511 L12: -0.7136 REMARK 3 L13: 0.3138 L23: -0.3208 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.0219 S13: 0.2588 REMARK 3 S21: 0.0139 S22: -0.0719 S23: -0.0716 REMARK 3 S31: -0.0302 S32: 0.0104 S33: -0.0030 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 230:261) REMARK 3 ORIGIN FOR THE GROUP (A): 59.6614 28.0693 10.3978 REMARK 3 T TENSOR REMARK 3 T11: 0.3165 T22: 0.2508 REMARK 3 T33: 0.2357 T12: -0.0316 REMARK 3 T13: 0.0072 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.7276 L22: 0.5828 REMARK 3 L33: 0.6692 L12: -0.5493 REMARK 3 L13: -0.1847 L23: 0.1012 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: -0.2372 S13: -0.5088 REMARK 3 S21: 0.3053 S22: -0.1184 S23: 0.0229 REMARK 3 S31: 0.5362 S32: -0.0196 S33: -0.0127 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 30 % PEG 3350, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.03350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.56650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.03350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.56650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FULL LENGTH T-ANTIGEN FUNCTIONS AS A HEXAMER. THE REMARK 300 ISOLATED ORIGIN BINDING DOMAIN (OBD) IS MONOMERIC IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 554 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 LYS A 132 REMARK 465 VAL A 133 REMARK 465 GLY B 130 REMARK 465 SER B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 THR A 218 OG1 CG2 REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 VAL B 133 CG1 CG2 REMARK 470 THR B 218 OG1 CG2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 149 NZ LYS B 225 2.14 REMARK 500 N GLU B 134 O HOH B 563 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 219 -118.34 103.28 REMARK 500 THR B 164 -168.52 -163.48 REMARK 500 THR B 218 137.59 -24.20 REMARK 500 PHE B 219 -31.55 85.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LIF RELATED DB: PDB REMARK 900 RELATED ID: 4LMD RELATED DB: PDB DBREF 4LMD A 132 261 UNP P03072 LT_POVJC 132 261 DBREF 4LMD B 132 261 UNP P03072 LT_POVJC 132 261 SEQADV 4LMD GLY A 130 UNP P03072 EXPRESSION TAG SEQADV 4LMD SER A 131 UNP P03072 EXPRESSION TAG SEQADV 4LMD GLY B 130 UNP P03072 EXPRESSION TAG SEQADV 4LMD SER B 131 UNP P03072 EXPRESSION TAG SEQRES 1 A 132 GLY SER LYS VAL GLU ASP PRO LYS ASP PHE PRO VAL ASP SEQRES 2 A 132 LEU HIS ALA PHE LEU SER GLN ALA VAL PHE SER ASN ARG SEQRES 3 A 132 THR VAL ALA SER PHE ALA VAL TYR THR THR LYS GLU LYS SEQRES 4 A 132 ALA GLN ILE LEU TYR LYS LYS LEU MET GLU LYS TYR SER SEQRES 5 A 132 VAL THR PHE ILE SER ARG HIS GLY PHE GLY GLY HIS ASN SEQRES 6 A 132 ILE LEU PHE PHE LEU THR PRO HIS ARG HIS ARG VAL SER SEQRES 7 A 132 ALA ILE ASN ASN TYR CYS GLN LYS LEU CYS THR PHE SER SEQRES 8 A 132 PHE LEU ILE CYS LYS GLY VAL ASN LYS GLU TYR LEU PHE SEQRES 9 A 132 TYR SER ALA LEU CYS ARG GLN PRO TYR ALA VAL VAL GLU SEQRES 10 A 132 GLU SER ILE GLN GLY GLY LEU LYS GLU HIS ASP PHE ASN SEQRES 11 A 132 PRO GLU SEQRES 1 B 132 GLY SER LYS VAL GLU ASP PRO LYS ASP PHE PRO VAL ASP SEQRES 2 B 132 LEU HIS ALA PHE LEU SER GLN ALA VAL PHE SER ASN ARG SEQRES 3 B 132 THR VAL ALA SER PHE ALA VAL TYR THR THR LYS GLU LYS SEQRES 4 B 132 ALA GLN ILE LEU TYR LYS LYS LEU MET GLU LYS TYR SER SEQRES 5 B 132 VAL THR PHE ILE SER ARG HIS GLY PHE GLY GLY HIS ASN SEQRES 6 B 132 ILE LEU PHE PHE LEU THR PRO HIS ARG HIS ARG VAL SER SEQRES 7 B 132 ALA ILE ASN ASN TYR CYS GLN LYS LEU CYS THR PHE SER SEQRES 8 B 132 PHE LEU ILE CYS LYS GLY VAL ASN LYS GLU TYR LEU PHE SEQRES 9 B 132 TYR SER ALA LEU CYS ARG GLN PRO TYR ALA VAL VAL GLU SEQRES 10 B 132 GLU SER ILE GLN GLY GLY LEU LYS GLU HIS ASP PHE ASN SEQRES 11 B 132 PRO GLU HET GOL A 301 14 HET FLC B 301 13 HET FLC B 302 13 HET GOL B 303 14 HETNAM GOL GLYCEROL HETNAM FLC CITRATE ANION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 FLC 2(C6 H5 O7 3-) FORMUL 7 HOH *371(H2 O) HELIX 1 1 PRO A 140 LEU A 147 5 8 HELIX 2 2 LYS A 166 TYR A 180 1 15 HELIX 3 3 ARG A 205 LEU A 216 1 12 HELIX 4 4 LYS A 229 LEU A 237 1 9 HELIX 5 5 LYS A 254 PHE A 258 5 5 HELIX 6 6 PRO B 140 LEU B 147 5 8 HELIX 7 7 LYS B 166 SER B 181 1 16 HELIX 8 8 ARG B 205 THR B 218 1 14 HELIX 9 9 LYS B 229 LEU B 237 1 9 HELIX 10 10 LYS B 254 PHE B 258 5 5 SHEET 1 A 5 LEU A 222 GLY A 226 0 SHEET 2 A 5 VAL A 157 THR A 165 -1 N ALA A 161 O LYS A 225 SHEET 3 A 5 HIS A 193 HIS A 204 -1 O HIS A 204 N VAL A 157 SHEET 4 A 5 PHE A 184 PHE A 190 -1 N HIS A 188 O ILE A 195 SHEET 5 A 5 ALA A 243 GLU A 247 -1 O VAL A 245 N ARG A 187 SHEET 1 B 5 ILE B 223 GLY B 226 0 SHEET 2 B 5 VAL B 157 THR B 165 -1 N TYR B 163 O ILE B 223 SHEET 3 B 5 HIS B 193 HIS B 204 -1 O HIS B 204 N VAL B 157 SHEET 4 B 5 PHE B 184 PHE B 190 -1 N HIS B 188 O ILE B 195 SHEET 5 B 5 ALA B 243 GLU B 247 -1 O VAL B 245 N ARG B 187 CISPEP 1 THR A 218 PHE A 219 0 22.15 CISPEP 2 GLN A 240 PRO A 241 0 14.02 CISPEP 3 GLN B 240 PRO B 241 0 8.27 SITE 1 AC1 5 ILE A 249 ASP A 257 HOH A 440 HOH A 499 SITE 2 AC1 5 HOH A 573 SITE 1 AC2 12 HIS A 204 ALA A 208 HIS B 202 ARG B 203 SITE 2 AC2 12 HOH B 417 HOH B 441 HOH B 447 HOH B 452 SITE 3 AC2 12 HOH B 475 HOH B 476 HOH B 567 HOH B 574 SITE 1 AC3 11 ASN A 228 LYS A 229 GLU A 230 ASN A 259 SITE 2 AC3 11 GLU A 261 SER B 153 ASN B 154 HOH B 478 SITE 3 AC3 11 HOH B 489 HOH B 542 HOH B 576 SITE 1 AC4 9 ASN A 259 SER B 148 ALA B 150 SER B 153 SITE 2 AC4 9 ARG B 155 VAL B 206 GLY B 226 HOH B 428 SITE 3 AC4 9 HOH B 486 CRYST1 146.067 37.133 64.753 90.00 112.58 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006846 0.000000 0.002848 0.00000 SCALE2 0.000000 0.026930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016726 0.00000