HEADER TRANSPORT PROTEIN 06-AUG-13 4M48 TITLE X-RAY STRUCTURE OF DOPAMINE TRANSPORTER ELUCIDATES ANTIDEPRESSANT TITLE 2 MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: DOPAMINE TRANSPORTER, GFP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 9D5 ANTIBODY, LIGHT CHAIN; COMPND 10 CHAIN: L; COMPND 11 FRAGMENT: FAB, PAPAIN CLEAVAGE FRAGMENT; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 9D5 ANTIBODY, HEAVY CHAIN; COMPND 14 CHAIN: H; COMPND 15 FRAGMENT: FAB, PAPAIN CLEAVAGE FRAGMENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: DAT, CG8380; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090 KEYWDS SLC6, NEUROTRANSMITTER TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.GOUAUX,A.PENMATSA,K.WANG REVDAT 6 20-SEP-23 4M48 1 REMARK SEQADV LINK REVDAT 5 26-JUL-17 4M48 1 SOURCE REMARK REVDAT 4 13-NOV-13 4M48 1 JRNL REVDAT 3 09-OCT-13 4M48 1 REMARK REVDAT 2 02-OCT-13 4M48 1 JRNL REVDAT 1 18-SEP-13 4M48 0 JRNL AUTH A.PENMATSA,K.H.WANG,E.GOUAUX JRNL TITL X-RAY STRUCTURE OF DOPAMINE TRANSPORTER ELUCIDATES JRNL TITL 2 ANTIDEPRESSANT MECHANISM. JRNL REF NATURE V. 503 85 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 24037379 JRNL DOI 10.1038/NATURE12533 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1402) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 42145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3822 - 7.2788 0.89 2732 146 0.2452 0.2708 REMARK 3 2 7.2788 - 5.7807 0.91 2668 145 0.2230 0.2491 REMARK 3 3 5.7807 - 5.0509 0.92 2659 150 0.1938 0.2483 REMARK 3 4 5.0509 - 4.5895 0.92 2664 131 0.1741 0.1813 REMARK 3 5 4.5895 - 4.2608 0.93 2694 130 0.1830 0.2269 REMARK 3 6 4.2608 - 4.0097 0.93 2681 124 0.1845 0.2439 REMARK 3 7 4.0097 - 3.8090 0.93 2680 135 0.1977 0.2127 REMARK 3 8 3.8090 - 3.6433 0.94 2673 136 0.2131 0.2568 REMARK 3 9 3.6433 - 3.5031 0.94 2667 143 0.2255 0.2910 REMARK 3 10 3.5031 - 3.3822 0.94 2661 156 0.2282 0.2713 REMARK 3 11 3.3822 - 3.2765 0.94 2710 125 0.2507 0.3074 REMARK 3 12 3.2765 - 3.1828 0.94 2663 147 0.2766 0.2963 REMARK 3 13 3.1828 - 3.0991 0.95 2675 156 0.3070 0.3674 REMARK 3 14 3.0991 - 3.0235 0.95 2686 145 0.3406 0.3664 REMARK 3 15 3.0235 - 2.9550 0.90 2548 115 0.3626 0.4186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7690 REMARK 3 ANGLE : 0.824 10491 REMARK 3 CHIRALITY : 0.054 1166 REMARK 3 PLANARITY : 0.004 1305 REMARK 3 DIHEDRAL : 11.589 2625 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.955 REMARK 200 RESOLUTION RANGE LOW (A) : 103.224 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.350 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.95500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3F3A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM GLYCINE, PH 9.0, 38% PEG350 REMARK 280 MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.91950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.22150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.84200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.22150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.91950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.84200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 ASN A 21 REMARK 465 SER A 22 REMARK 465 ILE A 23 REMARK 465 SER A 24 REMARK 465 GLN A 600 REMARK 465 GLN A 601 REMARK 465 LEU A 602 REMARK 465 VAL A 603 REMARK 465 PRO A 604 REMARK 465 ARG A 605 REMARK 465 MET L -21 REMARK 465 ASP L -20 REMARK 465 PHE L -19 REMARK 465 GLN L -18 REMARK 465 VAL L -17 REMARK 465 GLN L -16 REMARK 465 ILE L -15 REMARK 465 PHE L -14 REMARK 465 SER L -13 REMARK 465 PHE L -12 REMARK 465 LEU L -11 REMARK 465 LEU L -10 REMARK 465 ILE L -9 REMARK 465 SER L -8 REMARK 465 ALA L -7 REMARK 465 SER L -6 REMARK 465 VAL L -5 REMARK 465 ALA L -4 REMARK 465 MET L -3 REMARK 465 SER L -2 REMARK 465 ARG L -1 REMARK 465 GLY L 0 REMARK 465 CYS L 215 REMARK 465 MET H -18 REMARK 465 ASN H -17 REMARK 465 PHE H -16 REMARK 465 GLY H -15 REMARK 465 LEU H -14 REMARK 465 ARG H -13 REMARK 465 LEU H -12 REMARK 465 VAL H -11 REMARK 465 PHE H -10 REMARK 465 LEU H -9 REMARK 465 VAL H -8 REMARK 465 LEU H -7 REMARK 465 ILE H -6 REMARK 465 LEU H -5 REMARK 465 LYS H -4 REMARK 465 GLY H -3 REMARK 465 VAL H -2 REMARK 465 GLN H -1 REMARK 465 CYS H 0 REMARK 465 GLY H 135 REMARK 465 ASP H 136 REMARK 465 THR H 137 REMARK 465 THR H 138 REMARK 465 GLY H 220 REMARK 465 PRO H 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 162 OG REMARK 470 GLN A 163 CG CD OE1 NE2 REMARK 470 TYR A 305 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 ARG A 442 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 446 CG CD1 CD2 REMARK 470 VAL A 457 CG1 CG2 REMARK 470 ARG A 476 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 517 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 580 CG CD1 CD2 REMARK 470 LEU A 586 CG CD1 CD2 REMARK 470 ARG A 587 CG CD NE CZ NH1 NH2 REMARK 470 SER L 128 OG REMARK 470 GLU L 155 CG CD OE1 OE2 REMARK 470 SER L 169 OG REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 470 GLN H 3 CG CD OE1 NE2 REMARK 470 THR H 28 OG1 CG2 REMARK 470 SER H 30 OG REMARK 470 ARG H 76 CG CD NE CZ NH1 NH2 REMARK 470 GLN H 111 CG CD OE1 NE2 REMARK 470 VAL H 189 CG1 CG2 REMARK 470 SER H 198 OG REMARK 470 THR H 200 OG1 CG2 REMARK 470 ARG H 219 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 40.35 -80.63 REMARK 500 ASP A 46 -155.56 -133.88 REMARK 500 ARG A 52 -48.18 -134.95 REMARK 500 PHE A 106 39.36 -96.65 REMARK 500 ASN A 217 -61.70 -90.61 REMARK 500 ASP A 231 74.95 -113.30 REMARK 500 PHE A 301 2.51 -67.86 REMARK 500 VAL A 391 -63.52 -127.29 REMARK 500 ASN A 443 56.56 -119.76 REMARK 500 TYR A 477 -43.93 -130.66 REMARK 500 ALA A 548 -112.75 51.84 REMARK 500 ARG A 598 86.36 -67.52 REMARK 500 THR L 52 -54.65 63.93 REMARK 500 ASN L 139 70.89 51.77 REMARK 500 LYS L 170 -74.91 -108.94 REMARK 500 ASP L 185 -72.35 -64.51 REMARK 500 ASN L 191 -43.17 -144.47 REMARK 500 ARG L 212 32.66 -81.27 REMARK 500 ASN L 213 52.44 -146.55 REMARK 500 THR H 28 89.15 -68.65 REMARK 500 THR H 122 106.17 -59.25 REMARK 500 VAL H 133 -29.21 -140.90 REMARK 500 SER H 162 12.93 59.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 42 O REMARK 620 2 VAL A 45 O 83.8 REMARK 620 3 LEU A 417 O 162.2 94.0 REMARK 620 4 ASP A 420 OD1 83.2 121.6 82.9 REMARK 620 5 SER A 421 OG 92.5 116.1 104.3 121.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 44 O REMARK 620 2 ASN A 49 OD1 91.4 REMARK 620 3 SER A 320 O 80.8 163.6 REMARK 620 4 SER A 320 OG 147.6 109.8 72.1 REMARK 620 5 ASN A 352 OD1 76.7 88.0 76.2 79.8 REMARK 620 6 HOH A 809 O 93.2 98.6 96.2 106.8 168.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 21B A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLR A 705 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN A COMPRISES RESIDUES 21-163 AND 207-601 OF DOPAMINE REMARK 999 TRANSPORTER (UNP Q9NB97). DBREF 4M48 A 21 163 UNP Q9NB97 Q9NB97_DROME 21 163 DBREF 4M48 A 207 601 UNP Q9NB97 Q9NB97_DROME 207 601 DBREF 4M48 L -21 215 PDB 4M48 4M48 -21 215 DBREF 4M48 H -18 221 PDB 4M48 4M48 -18 221 SEQADV 4M48 MET A 20 UNP Q9NB97 INITIATING METHIONINE SEQADV 4M48 ALA A 74 UNP Q9NB97 VAL 74 ENGINEERED MUTATION SEQADV 4M48 ALA A 275 UNP Q9NB97 VAL 275 ENGINEERED MUTATION SEQADV 4M48 ALA A 311 UNP Q9NB97 VAL 311 ENGINEERED MUTATION SEQADV 4M48 ALA A 415 UNP Q9NB97 LEU 415 ENGINEERED MUTATION SEQADV 4M48 LEU A 538 UNP Q9NB97 GLY 538 ENGINEERED MUTATION SEQADV 4M48 LEU A 602 UNP Q9NB97 EXPRESSION TAG SEQADV 4M48 VAL A 603 UNP Q9NB97 EXPRESSION TAG SEQADV 4M48 PRO A 604 UNP Q9NB97 EXPRESSION TAG SEQADV 4M48 ARG A 605 UNP Q9NB97 EXPRESSION TAG SEQRES 1 A 543 MET ASN SER ILE SER ASP GLU ARG GLU THR TRP SER GLY SEQRES 2 A 543 LYS VAL ASP PHE LEU LEU SER VAL ILE GLY PHE ALA VAL SEQRES 3 A 543 ASP LEU ALA ASN VAL TRP ARG PHE PRO TYR LEU CYS TYR SEQRES 4 A 543 LYS ASN GLY GLY GLY ALA PHE LEU VAL PRO TYR GLY ILE SEQRES 5 A 543 MET LEU ALA VAL GLY GLY ILE PRO LEU PHE TYR MET GLU SEQRES 6 A 543 LEU ALA LEU GLY GLN HIS ASN ARG LYS GLY ALA ILE THR SEQRES 7 A 543 CYS TRP GLY ARG LEU VAL PRO LEU PHE LYS GLY ILE GLY SEQRES 8 A 543 TYR ALA VAL VAL LEU ILE ALA PHE TYR VAL ASP PHE TYR SEQRES 9 A 543 TYR ASN VAL ILE ILE ALA TRP SER LEU ARG PHE PHE PHE SEQRES 10 A 543 ALA SER PHE THR ASN SER LEU PRO TRP THR SER CYS ASN SEQRES 11 A 543 ASN ILE TRP ASN THR PRO ASN CYS ARG PRO PHE GLU SER SEQRES 12 A 543 GLN GLY PHE GLN SER ALA ALA SER GLU TYR PHE ASN ARG SEQRES 13 A 543 TYR ILE LEU GLU LEU ASN ARG SER GLU GLY ILE HIS ASP SEQRES 14 A 543 LEU GLY ALA ILE LYS TRP ASP MET ALA LEU CYS LEU LEU SEQRES 15 A 543 ILE VAL TYR LEU ILE CYS TYR PHE SER LEU TRP LYS GLY SEQRES 16 A 543 ILE SER THR SER GLY LYS VAL VAL TRP PHE THR ALA LEU SEQRES 17 A 543 PHE PRO TYR ALA ALA LEU LEU ILE LEU LEU ILE ARG GLY SEQRES 18 A 543 LEU THR LEU PRO GLY SER PHE LEU GLY ILE GLN TYR TYR SEQRES 19 A 543 LEU THR PRO ASN PHE SER ALA ILE TYR LYS ALA GLU VAL SEQRES 20 A 543 TRP ALA ASP ALA ALA THR GLN VAL PHE PHE SER LEU GLY SEQRES 21 A 543 PRO GLY PHE GLY VAL LEU LEU ALA TYR ALA SER TYR ASN SEQRES 22 A 543 LYS TYR HIS ASN ASN VAL TYR LYS ASP ALA LEU LEU THR SEQRES 23 A 543 SER PHE ILE ASN SER ALA THR SER PHE ILE ALA GLY PHE SEQRES 24 A 543 VAL ILE PHE SER VAL LEU GLY TYR MET ALA HIS THR LEU SEQRES 25 A 543 GLY VAL ARG ILE GLU ASP VAL ALA THR GLU GLY PRO GLY SEQRES 26 A 543 LEU VAL PHE VAL VAL TYR PRO ALA ALA ILE ALA THR MET SEQRES 27 A 543 PRO ALA SER THR PHE TRP ALA LEU ILE PHE PHE MET MET SEQRES 28 A 543 LEU ALA THR LEU GLY LEU ASP SER SER PHE GLY GLY SER SEQRES 29 A 543 GLU ALA ILE ILE THR ALA LEU SER ASP GLU PHE PRO LYS SEQRES 30 A 543 ILE LYS ARG ASN ARG GLU LEU PHE VAL ALA GLY LEU PHE SEQRES 31 A 543 SER LEU TYR PHE VAL VAL GLY LEU ALA SER CYS THR GLN SEQRES 32 A 543 GLY GLY PHE TYR PHE PHE HIS LEU LEU ASP ARG TYR ALA SEQRES 33 A 543 ALA GLY TYR SER ILE LEU VAL ALA VAL PHE PHE GLU ALA SEQRES 34 A 543 ILE ALA VAL SER TRP ILE TYR GLY THR ASN ARG PHE SER SEQRES 35 A 543 GLU ASP ILE ARG ASP MET ILE GLY PHE PRO PRO GLY ARG SEQRES 36 A 543 TYR TRP GLN VAL CYS TRP ARG PHE VAL ALA PRO ILE PHE SEQRES 37 A 543 LEU LEU PHE ILE THR VAL TYR LEU LEU ILE GLY TYR GLU SEQRES 38 A 543 PRO LEU THR TYR ALA ASP TYR VAL TYR PRO SER TRP ALA SEQRES 39 A 543 ASN ALA LEU GLY TRP CYS ILE ALA GLY SER SER VAL VAL SEQRES 40 A 543 MET ILE PRO ALA VAL ALA ILE PHE LYS LEU LEU SER THR SEQRES 41 A 543 PRO GLY SER LEU ARG GLN ARG PHE THR ILE LEU THR THR SEQRES 42 A 543 PRO TRP ARG ASP GLN GLN LEU VAL PRO ARG SEQRES 1 L 237 MET ASP PHE GLN VAL GLN ILE PHE SER PHE LEU LEU ILE SEQRES 2 L 237 SER ALA SER VAL ALA MET SER ARG GLY GLU ASN VAL LEU SEQRES 3 L 237 THR GLN SER PRO ALA ILE MET SER THR SER PRO GLY GLU SEQRES 4 L 237 LYS VAL THR MET THR CYS ARG ALA SER SER SER VAL GLY SEQRES 5 L 237 SER SER TYR LEU HIS TRP TYR GLN GLN LYS SER GLY ALA SEQRES 6 L 237 SER PRO LYS LEU TRP ILE TYR SER THR SER ASN LEU ALA SEQRES 7 L 237 SER GLY VAL PRO ALA ARG PHE SER GLY SER GLY SER GLY SEQRES 8 L 237 THR SER TYR SER LEU THR ILE SER SER VAL GLU ALA GLU SEQRES 9 L 237 ASP ALA ALA THR TYR TYR CYS GLN GLN PHE SER GLY TYR SEQRES 10 L 237 PRO LEU THR PHE GLY SER GLY THR LYS LEU GLU MET LYS SEQRES 11 L 237 ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE PRO PRO SEQRES 12 L 237 SER SER GLU GLN LEU THR SER GLY GLY ALA SER VAL VAL SEQRES 13 L 237 CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE ASN VAL SEQRES 14 L 237 LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN GLY VAL SEQRES 15 L 237 LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SER THR SEQRES 16 L 237 TYR SER MET SER SER THR LEU THR LEU THR LYS ASP GLU SEQRES 17 L 237 TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR HIS SEQRES 18 L 237 LYS THR SER THR SER PRO ILE VAL LYS SER PHE ASN ARG SEQRES 19 L 237 ASN GLU CYS SEQRES 1 H 240 MET ASN PHE GLY LEU ARG LEU VAL PHE LEU VAL LEU ILE SEQRES 2 H 240 LEU LYS GLY VAL GLN CYS GLU VAL GLN LEU VAL GLU SER SEQRES 3 H 240 GLY GLY GLY LEU VAL LYS PRO GLY GLY SER LEU LYS LEU SEQRES 4 H 240 SER CYS ALA ALA SER GLY PHE THR PHE SER SER TYR ALA SEQRES 5 H 240 MET SER TRP VAL ARG GLN SER PRO GLU LYS ARG LEU GLU SEQRES 6 H 240 TRP VAL ALA GLU ILE SER SER GLY GLY ARG TYR ILE TYR SEQRES 7 H 240 TYR SER ASP THR VAL THR GLY ARG PHE THR ILE SER ARG SEQRES 8 H 240 ASP ASN ALA ARG ASN ILE LEU HIS LEU GLU MET SER SER SEQRES 9 H 240 LEU ARG SER GLU ASP THR ALA MET TYR TYR CYS ALA ARG SEQRES 10 H 240 GLY GLU VAL ARG GLN ARG GLY PHE ASP TYR TRP GLY GLN SEQRES 11 H 240 GLY THR THR LEU THR VAL SER SER ALA LYS THR THR ALA SEQRES 12 H 240 PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR SEQRES 13 H 240 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 14 H 240 TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SEQRES 15 H 240 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 16 H 240 GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 17 H 240 THR SER SER THR TRP PRO SER GLN SER ILE THR CYS ASN SEQRES 18 H 240 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 19 H 240 ILE GLU PRO ARG GLY PRO HET NA A 701 1 HET NA A 702 1 HET CL A 703 1 HET 21B A 704 20 HET CLR A 705 28 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM 21B NORTRIPTYLINE HETNAM CLR CHOLESTEROL HETSYN 21B 3-(10,11-DIHYDRO-5H-DIBENZO[A,D][7]ANNULEN-5-YLIDENE)- HETSYN 2 21B N-METHYLPROPAN-1-AMINE FORMUL 4 NA 2(NA 1+) FORMUL 6 CL CL 1- FORMUL 7 21B C19 H21 N FORMUL 8 CLR C27 H46 O FORMUL 9 HOH *32(H2 O) HELIX 1 1 GLY A 32 VAL A 45 1 14 HELIX 2 2 LEU A 47 ARG A 52 1 6 HELIX 3 3 ARG A 52 ASN A 60 1 9 HELIX 4 4 GLY A 61 ALA A 64 5 4 HELIX 5 5 PHE A 65 GLY A 76 1 12 HELIX 6 6 GLY A 76 ARG A 92 1 17 HELIX 7 7 GLY A 94 VAL A 103 1 10 HELIX 8 8 LYS A 107 TYR A 124 1 18 HELIX 9 9 TYR A 124 SER A 138 1 15 HELIX 10 10 ALA A 211 TYR A 219 1 9 HELIX 11 11 GLU A 222 SER A 226 5 5 HELIX 12 12 LYS A 236 TRP A 255 1 20 HELIX 13 13 GLY A 257 ALA A 269 1 13 HELIX 14 14 LEU A 270 LEU A 286 1 17 HELIX 15 15 GLY A 288 THR A 298 1 11 HELIX 16 16 ASN A 300 TYR A 305 5 6 HELIX 17 17 LYS A 306 GLY A 322 1 17 HELIX 18 18 GLY A 326 TYR A 334 1 9 HELIX 19 19 ASN A 340 LEU A 374 1 35 HELIX 20 20 ARG A 377 ALA A 382 1 6 HELIX 21 21 GLY A 385 VAL A 391 1 7 HELIX 22 22 VAL A 391 ALA A 398 1 8 HELIX 23 23 ALA A 402 ASP A 435 1 34 HELIX 24 24 PHE A 437 ARG A 442 1 6 HELIX 25 25 ASN A 443 LEU A 460 1 18 HELIX 26 26 GLY A 466 ALA A 478 1 13 HELIX 27 27 TYR A 481 ILE A 497 1 17 HELIX 28 28 GLY A 499 GLY A 512 1 14 HELIX 29 29 GLY A 516 PHE A 525 1 10 HELIX 30 30 PHE A 525 GLY A 541 1 17 HELIX 31 31 PRO A 553 VAL A 569 1 17 HELIX 32 32 VAL A 569 LEU A 580 1 12 HELIX 33 33 SER A 585 THR A 595 1 11 HELIX 34 34 GLU L 80 ALA L 84 5 5 HELIX 35 35 SER L 122 GLY L 129 1 8 HELIX 36 36 LYS L 184 ARG L 189 1 6 HELIX 37 37 THR H 28 TYR H 32 5 5 HELIX 38 38 ARG H 87 THR H 91 5 5 HELIX 39 39 SER H 162 SER H 164 5 3 HELIX 40 40 SER H 192 GLN H 197 1 6 HELIX 41 41 PRO H 206 SER H 209 5 4 SHEET 1 A 2 CYS A 157 ARG A 158 0 SHEET 2 A 2 GLN A 209 SER A 210 1 O GLN A 209 N ARG A 158 SHEET 1 B 2 THR A 546 TYR A 547 0 SHEET 2 B 2 TYR A 550 VAL A 551 -1 O TYR A 550 N TYR A 547 SHEET 1 C 3 LEU L 4 SER L 7 0 SHEET 2 C 3 VAL L 19 VAL L 29 -1 O ARG L 24 N THR L 5 SHEET 3 C 3 PHE L 63 ILE L 76 -1 O TYR L 72 N CYS L 23 SHEET 1 D 6 ILE L 10 THR L 13 0 SHEET 2 D 6 THR L 103 MET L 107 1 O LYS L 104 N MET L 11 SHEET 3 D 6 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 D 6 LEU L 34 GLN L 39 -1 N HIS L 35 O GLN L 90 SHEET 5 D 6 LYS L 46 TYR L 50 -1 O TRP L 48 N TRP L 36 SHEET 6 D 6 ASN L 54 LEU L 55 -1 O ASN L 54 N TYR L 50 SHEET 1 E 4 ILE L 10 THR L 13 0 SHEET 2 E 4 THR L 103 MET L 107 1 O LYS L 104 N MET L 11 SHEET 3 E 4 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 E 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 F 4 THR L 115 PHE L 119 0 SHEET 2 F 4 GLY L 130 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 F 4 TYR L 174 THR L 183 -1 O LEU L 182 N ALA L 131 SHEET 4 F 4 VAL L 160 TRP L 164 -1 N SER L 163 O SER L 177 SHEET 1 G 4 SER L 154 ARG L 156 0 SHEET 2 G 4 ASN L 146 ILE L 151 -1 N ILE L 151 O SER L 154 SHEET 3 G 4 SER L 192 THR L 198 -1 O THR L 194 N LYS L 150 SHEET 4 G 4 ILE L 206 ASN L 211 -1 O ILE L 206 N ALA L 197 SHEET 1 H 4 GLN H 3 SER H 7 0 SHEET 2 H 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 H 4 ILE H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 H 4 THR H 69 ASP H 73 -1 N SER H 71 O HIS H 80 SHEET 1 I 6 LEU H 11 VAL H 12 0 SHEET 2 I 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 I 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 113 SHEET 4 I 6 MET H 34 SER H 40 -1 N VAL H 37 O TYR H 95 SHEET 5 I 6 ARG H 44 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 I 6 ILE H 58 TYR H 60 -1 O TYR H 59 N GLU H 50 SHEET 1 J 4 LEU H 11 VAL H 12 0 SHEET 2 J 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 J 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 113 SHEET 4 J 4 TYR H 108 TRP H 109 -1 O TYR H 108 N ARG H 98 SHEET 1 K 4 SER H 126 LEU H 130 0 SHEET 2 K 4 SER H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 K 4 TYR H 181 THR H 190 -1 O LEU H 183 N VAL H 148 SHEET 4 K 4 VAL H 169 LEU H 176 -1 N PHE H 172 O SER H 184 SHEET 1 L 3 THR H 157 TRP H 160 0 SHEET 2 L 3 THR H 200 HIS H 205 -1 O ASN H 202 N THR H 159 SHEET 3 L 3 THR H 210 LYS H 215 -1 O LYS H 214 N CYS H 201 SSBOND 1 CYS A 148 CYS A 157 1555 1555 2.05 SSBOND 2 CYS L 23 CYS L 89 1555 1555 2.05 SSBOND 3 CYS L 135 CYS L 195 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 5 CYS H 146 CYS H 201 1555 1555 2.04 LINK O GLY A 42 NA NA A 702 1555 1555 2.28 LINK O ALA A 44 NA NA A 701 1555 1555 2.31 LINK O VAL A 45 NA NA A 702 1555 1555 2.29 LINK OD1 ASN A 49 NA NA A 701 1555 1555 2.73 LINK O SER A 320 NA NA A 701 1555 1555 2.40 LINK OG SER A 320 NA NA A 701 1555 1555 2.44 LINK OD1 ASN A 352 NA NA A 701 1555 1555 3.01 LINK O LEU A 417 NA NA A 702 1555 1555 2.34 LINK OD1 ASP A 420 NA NA A 702 1555 1555 2.56 LINK OG SER A 421 NA NA A 702 1555 1555 2.36 LINK NA NA A 701 O HOH A 809 1555 1555 2.86 CISPEP 1 SER L 7 PRO L 8 0 -0.82 CISPEP 2 TYR L 95 PRO L 96 0 5.39 CISPEP 3 TYR L 141 PRO L 142 0 3.60 CISPEP 4 PRO H 132 VAL H 133 0 -1.76 CISPEP 5 PHE H 152 PRO H 153 0 -4.17 CISPEP 6 GLU H 154 PRO H 155 0 1.92 CISPEP 7 TRP H 194 PRO H 195 0 1.75 SITE 1 AC1 6 ALA A 44 ASP A 46 ASN A 49 SER A 320 SITE 2 AC1 6 ASN A 352 HOH A 809 SITE 1 AC2 6 GLY A 42 VAL A 45 ASP A 46 LEU A 417 SITE 2 AC2 6 ASP A 420 SER A 421 SITE 1 AC3 4 TYR A 69 GLN A 316 SER A 320 SER A 356 SITE 1 AC4 10 PHE A 43 ASP A 46 VAL A 120 ASP A 121 SITE 2 AC4 10 TYR A 124 PHE A 319 PHE A 325 SER A 421 SITE 3 AC4 10 GLY A 425 ALA A 479 SITE 1 AC5 5 LEU A 37 LEU A 270 TYR A 273 LEU A 277 SITE 2 AC5 5 ILE A 351 CRYST1 97.839 133.684 162.443 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010221 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006156 0.00000