HEADER TRANSFERASE/DNA 14-AUG-13 4M9H TITLE DNA POLYMERASE BETA E295K SOAKED WITH DTTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7, 4.2.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA TEMPLATE STRAND; COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA PRIMER STRAND; COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA DOWNSTREAM STRAND; COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: DNA TEMPLATE STRAND, 16MER; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: DNA PRIMER STRAND, 10MER; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 OTHER_DETAILS: DNA DOWNSTREAM STRAND, 5MER KEYWDS DNA POLYMERASE, LYASE, DNA COMPLEX, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ECKENROTH,S.DOUBLIE REVDAT 5 28-FEB-24 4M9H 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4M9H 1 REMARK REVDAT 3 18-DEC-13 4M9H 1 JRNL REVDAT 2 30-OCT-13 4M9H 1 JRNL REVDAT 1 16-OCT-13 4M9H 0 JRNL AUTH B.E.ECKENROTH,J.B.TOWLE-WEICKSEL,J.B.SWEASY,S.DOUBLIE JRNL TITL THE E295K CANCER VARIANT OF HUMAN POLYMERASE BETA FAVORS THE JRNL TITL 2 MISMATCH CONFORMATIONAL PATHWAY DURING NUCLEOTIDE SELECTION. JRNL REF J.BIOL.CHEM. V. 288 34850 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24133209 JRNL DOI 10.1074/JBC.M113.510891 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 33785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.7369 - 6.6471 0.99 1281 182 0.1632 0.1648 REMARK 3 2 6.6471 - 5.3794 1.00 1282 141 0.1624 0.1805 REMARK 3 3 5.3794 - 4.7311 1.00 1344 132 0.1462 0.2001 REMARK 3 4 4.7311 - 4.3132 0.99 1311 128 0.1361 0.1575 REMARK 3 5 4.3132 - 4.0124 1.00 1273 151 0.1357 0.1735 REMARK 3 6 4.0124 - 3.7810 0.99 1307 165 0.1498 0.1967 REMARK 3 7 3.7810 - 3.5952 0.99 1295 147 0.1595 0.2057 REMARK 3 8 3.5952 - 3.4413 1.00 1269 128 0.1649 0.2380 REMARK 3 9 3.4413 - 3.3107 0.99 1346 115 0.1730 0.2489 REMARK 3 10 3.3107 - 3.1979 1.00 1282 158 0.1838 0.2651 REMARK 3 11 3.1979 - 3.0991 0.99 1314 165 0.1971 0.2867 REMARK 3 12 3.0991 - 3.0115 0.99 1257 135 0.2126 0.2269 REMARK 3 13 3.0115 - 2.9330 1.00 1347 132 0.2159 0.2981 REMARK 3 14 2.9330 - 2.8621 0.99 1294 114 0.1971 0.2621 REMARK 3 15 2.8621 - 2.7976 1.00 1368 129 0.2083 0.2930 REMARK 3 16 2.7976 - 2.7385 0.99 1222 163 0.1989 0.3134 REMARK 3 17 2.7385 - 2.6842 0.99 1304 173 0.2114 0.2904 REMARK 3 18 2.6842 - 2.6339 0.99 1289 135 0.2072 0.2443 REMARK 3 19 2.6339 - 2.5871 0.98 1285 152 0.2153 0.3321 REMARK 3 20 2.5871 - 2.5436 0.97 1240 141 0.2377 0.2792 REMARK 3 21 2.5436 - 2.5028 0.93 1239 140 0.2300 0.3011 REMARK 3 22 2.5028 - 2.4645 0.91 1187 124 0.2320 0.3073 REMARK 3 23 2.4645 - 2.4285 0.85 1132 118 0.2323 0.3050 REMARK 3 24 2.4285 - 2.3944 0.72 959 90 0.2309 0.2718 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3207 REMARK 3 ANGLE : 0.632 4463 REMARK 3 CHIRALITY : 0.040 495 REMARK 3 PLANARITY : 0.002 467 REMARK 3 DIHEDRAL : 17.793 1228 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11:79) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7980 -4.1575 7.9368 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.1049 REMARK 3 T33: 0.1262 T12: -0.0131 REMARK 3 T13: 0.0098 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.1998 L22: 1.9528 REMARK 3 L33: 1.6858 L12: -0.1742 REMARK 3 L13: 0.1191 L23: 0.5675 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0560 S13: -0.2407 REMARK 3 S21: -0.2951 S22: 0.0388 S23: 0.0068 REMARK 3 S31: 0.1119 S32: -0.2242 S33: -0.0494 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103:261) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0368 9.0464 22.1385 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0788 REMARK 3 T33: 0.0910 T12: 0.0127 REMARK 3 T13: -0.0025 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.1729 L22: 1.1878 REMARK 3 L33: 1.1791 L12: 0.1961 REMARK 3 L13: 0.1744 L23: 0.1342 REMARK 3 S TENSOR REMARK 3 S11: 0.1277 S12: -0.0812 S13: -0.1284 REMARK 3 S21: -0.0229 S22: -0.0617 S23: 0.0889 REMARK 3 S31: 0.0271 S32: -0.1161 S33: -0.0581 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262:334) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5915 7.3878 -4.5317 REMARK 3 T TENSOR REMARK 3 T11: 0.5133 T22: 0.6813 REMARK 3 T33: 0.2189 T12: -0.1981 REMARK 3 T13: 0.1539 T23: -0.2070 REMARK 3 L TENSOR REMARK 3 L11: 0.4037 L22: 0.8624 REMARK 3 L33: 1.6926 L12: 0.6042 REMARK 3 L13: -0.8797 L23: -1.1380 REMARK 3 S TENSOR REMARK 3 S11: -0.8614 S12: 0.6615 S13: -0.6161 REMARK 3 S21: -1.2149 S22: 1.2636 S23: -0.5914 REMARK 3 S31: 0.4958 S32: -0.5317 S33: -0.1540 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0705 13.9239 -3.1238 REMARK 3 T TENSOR REMARK 3 T11: 0.3004 T22: 0.1827 REMARK 3 T33: 0.1368 T12: 0.0740 REMARK 3 T13: 0.0385 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.7785 L22: 3.7591 REMARK 3 L33: 4.5825 L12: -1.1895 REMARK 3 L13: -1.0339 L23: 0.5288 REMARK 3 S TENSOR REMARK 3 S11: 0.2083 S12: 0.2610 S13: 0.4774 REMARK 3 S21: -0.0796 S22: 0.2291 S23: -0.0853 REMARK 3 S31: -0.0581 S32: 0.5618 S33: -0.2407 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 6:16) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5718 24.4746 15.1262 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.0971 REMARK 3 T33: 0.3028 T12: -0.0074 REMARK 3 T13: -0.0070 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 1.0499 L22: 3.2367 REMARK 3 L33: 0.7430 L12: -0.0677 REMARK 3 L13: -0.0483 L23: -0.0796 REMARK 3 S TENSOR REMARK 3 S11: 0.2963 S12: 0.4229 S13: 0.2137 REMARK 3 S21: 0.0868 S22: -0.1775 S23: -0.7236 REMARK 3 S31: 0.0817 S32: 0.1826 S33: -0.0462 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1:10) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1172 25.7077 16.0354 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1439 REMARK 3 T33: 0.1457 T12: -0.0323 REMARK 3 T13: -0.0475 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.2149 L22: 4.0685 REMARK 3 L33: 1.6822 L12: -0.2921 REMARK 3 L13: -0.0864 L23: 0.2571 REMARK 3 S TENSOR REMARK 3 S11: 0.1548 S12: -0.0440 S13: 0.3228 REMARK 3 S21: -0.6225 S22: -0.3664 S23: -0.0238 REMARK 3 S31: -0.1469 S32: -0.1290 S33: 0.1536 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5326 6.2097 -4.1857 REMARK 3 T TENSOR REMARK 3 T11: 0.4441 T22: 0.2577 REMARK 3 T33: -0.4727 T12: -0.0969 REMARK 3 T13: -0.0303 T23: 0.2577 REMARK 3 L TENSOR REMARK 3 L11: 1.1575 L22: 3.1696 REMARK 3 L33: 2.8203 L12: -0.1159 REMARK 3 L13: -0.4889 L23: -1.8549 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.6844 S13: 0.0174 REMARK 3 S21: -0.3627 S22: 0.1399 S23: 0.4757 REMARK 3 S31: 0.4588 S32: -0.2856 S33: -0.0940 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80:102) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9151 1.3026 22.9661 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.1897 REMARK 3 T33: 0.1673 T12: -0.0301 REMARK 3 T13: -0.0080 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 1.6075 L22: 1.1047 REMARK 3 L33: 0.4406 L12: -1.3700 REMARK 3 L13: -0.9483 L23: 0.7585 REMARK 3 S TENSOR REMARK 3 S11: 0.0736 S12: -0.1945 S13: -0.2153 REMARK 3 S21: -0.0070 S22: -0.0028 S23: -0.0860 REMARK 3 S31: 0.0226 S32: 0.1345 S33: -0.0656 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 104 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.394 REMARK 200 RESOLUTION RANGE LOW (A) : 14.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: ISOMORPHOUS REPLACEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 300 MM SODIUM ACETATE PH REMARK 280 9, 50 MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 GLU A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 GLN A 207 REMARK 465 PRO A 208 REMARK 465 LYS A 244 REMARK 465 ASN A 245 REMARK 465 ASP A 246 REMARK 465 GLU A 247 REMARK 465 GLU A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 68 CD CE NZ REMARK 470 LYS A 81 CE NZ REMARK 470 GLN A 90 CD OE1 NE2 REMARK 470 GLU A 129 CD OE1 OE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 SER A 202 OG REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 220 CD CE NZ REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 ILE A 277 CG1 CG2 CD1 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 285 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 287 CG CD1 CD2 REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 303 CG1 CG2 REMARK 470 THR A 304 OG1 CG2 REMARK 470 GLU A 309 CD OE1 OE2 REMARK 470 LYS A 317 CD CE NZ REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 LYS A 331 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 5 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 178 -144.66 -102.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TTP A 404 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 91.8 REMARK 620 3 VAL A 65 O 87.4 98.1 REMARK 620 4 HOH A 596 O 90.9 94.0 167.8 REMARK 620 5 DC D 3 OP1 175.7 91.9 94.2 86.6 REMARK 620 6 HOH D 102 O 93.0 169.5 91.4 76.5 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 O REMARK 620 2 VAL A 103 O 92.9 REMARK 620 3 ILE A 106 O 92.0 88.8 REMARK 620 4 HOH A 510 O 79.6 95.3 170.8 REMARK 620 5 DG P 9 OP1 162.0 101.5 99.1 88.2 REMARK 620 6 HOH P 101 O 77.2 168.6 85.9 88.6 89.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M9G RELATED DB: PDB REMARK 900 RELATED ID: 4M9J RELATED DB: PDB REMARK 900 RELATED ID: 4M9L RELATED DB: PDB REMARK 900 RELATED ID: 4M9N RELATED DB: PDB DBREF 4M9H A 1 335 UNP P06746 DPOLB_HUMAN 1 335 DBREF 4M9H T 1 16 PDB 4M9H 4M9H 1 16 DBREF 4M9H P 1 10 PDB 4M9H 4M9H 1 10 DBREF 4M9H D 1 5 PDB 4M9H 4M9H 1 5 SEQADV 4M9H LYS A 295 UNP P06746 GLU 295 ENGINEERED MUTATION SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN LYS TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU SEQRES 1 T 16 DC DC DG DA DC DA DG DC DG DC DA DT DC SEQRES 2 T 16 DA DG DC SEQRES 1 P 10 DG DC DT DG DA DT DG DC DG DC SEQRES 1 D 5 DG DT DC DG DG HET NA A 401 1 HET NA A 402 1 HET CL A 403 1 HET TTP A 404 13 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 5 NA 2(NA 1+) FORMUL 7 CL CL 1- FORMUL 8 TTP C10 H17 N2 O14 P3 FORMUL 9 HOH *223(H2 O) HELIX 1 1 ASN A 12 VAL A 29 1 18 HELIX 2 2 ALA A 32 LYS A 48 1 17 HELIX 3 3 SER A 55 LYS A 61 1 7 HELIX 4 4 GLY A 66 GLY A 80 1 15 HELIX 5 5 LEU A 82 ASP A 91 1 10 HELIX 6 6 ASP A 91 THR A 101 1 11 HELIX 7 7 GLY A 107 GLU A 117 1 11 HELIX 8 8 THR A 121 LYS A 127 1 7 HELIX 9 9 ASN A 128 LEU A 132 5 5 HELIX 10 10 ASN A 133 TYR A 142 1 10 HELIX 11 11 TYR A 142 GLU A 147 1 6 HELIX 12 12 ARG A 152 ASP A 170 1 19 HELIX 13 13 CYS A 178 ARG A 183 1 6 HELIX 14 14 LEU A 210 VAL A 221 1 12 HELIX 15 15 PRO A 261 ASP A 263 5 3 HELIX 16 16 GLN A 264 GLY A 274 1 11 HELIX 17 17 SER A 275 LYS A 289 1 15 HELIX 18 18 SER A 315 ILE A 323 1 9 HELIX 19 19 GLU A 329 ARG A 333 5 5 SHEET 1 A 2 ILE A 150 PRO A 151 0 SHEET 2 A 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 B 5 ILE A 174 VAL A 177 0 SHEET 2 B 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 B 5 ARG A 253 LEU A 259 1 O ARG A 258 N LEU A 195 SHEET 4 B 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 B 5 ILE A 224 LYS A 230 -1 N SER A 229 O MET A 236 SHEET 1 C 2 PHE A 291 ILE A 293 0 SHEET 2 C 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O LYS A 60 NA NA A 401 1555 1555 2.47 LINK O LEU A 62 NA NA A 401 1555 1555 2.50 LINK O VAL A 65 NA NA A 401 1555 1555 2.42 LINK O THR A 101 NA NA A 402 1555 1555 2.35 LINK O VAL A 103 NA NA A 402 1555 1555 2.44 LINK O ILE A 106 NA NA A 402 1555 1555 2.42 LINK NA NA A 401 O HOH A 596 1555 1555 2.59 LINK NA NA A 401 OP1 DC D 3 1555 1555 2.81 LINK NA NA A 401 O HOH D 102 1555 1555 2.40 LINK NA NA A 402 O HOH A 510 1555 1555 2.57 LINK NA NA A 402 OP1 DG P 9 1555 1555 2.32 LINK NA NA A 402 O HOH P 101 1555 1555 2.54 CISPEP 1 GLY A 274 SER A 275 0 1.34 SITE 1 AC1 6 LYS A 60 LEU A 62 VAL A 65 HOH A 596 SITE 2 AC1 6 DC D 3 HOH D 102 SITE 1 AC2 6 THR A 101 VAL A 103 ILE A 106 HOH A 510 SITE 2 AC2 6 DG P 9 HOH P 101 SITE 1 AC3 1 THR A 297 SITE 1 AC4 8 ARG A 149 SER A 180 ARG A 183 GLY A 189 SITE 2 AC4 8 ASP A 190 HOH A 588 HOH A 589 DC P 10 CRYST1 54.606 79.460 54.956 90.00 105.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018313 0.000000 0.005123 0.00000 SCALE2 0.000000 0.012585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018895 0.00000