HEADER HYDROLASE 15-AUG-13 4M9R TITLE CRYSTAL STRUCTURE OF CED-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DEATH PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 198-503; COMPND 5 SYNONYM: CED-3, CELL DEATH PROTEIN 3 SUBUNIT 1, CELL DEATH PROTEIN 3 COMPND 6 SUBUNIT 2; COMPND 7 EC: 3.4.22.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: CED-3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CASPASE, PROTEASE, CED-4, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.XU,P.D.JEFFREY,Y.G.SHI REVDAT 2 08-NOV-23 4M9R 1 SEQADV REVDAT 1 09-OCT-13 4M9R 0 JRNL AUTH W.HUANG,T.JIANG,W.CHOI,S.QI,Y.PANG,Q.HU,Y.XU,X.GONG, JRNL AUTH 2 P.D.JEFFREY,J.WANG,Y.G.SHI JRNL TITL MECHANISTIC INSIGHTS INTO CED-4-MEDIATED ACTIVATION OF CED-3 JRNL REF GENES DEV. V. 27 2039 2013 JRNL REFN ISSN 0890-9369 JRNL PMID 24065769 JRNL DOI 10.1101/GAD.224428.113 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 11997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.1789 - 4.2073 0.98 2911 154 0.1935 0.2387 REMARK 3 2 4.2073 - 3.3444 0.99 2912 131 0.1802 0.2549 REMARK 3 3 3.3444 - 2.9231 0.99 2853 155 0.2387 0.2799 REMARK 3 4 2.9231 - 2.6564 0.94 2745 136 0.2995 0.3582 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 80.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.83770 REMARK 3 B22 (A**2) : 9.83770 REMARK 3 B33 (A**2) : -19.67540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3894 REMARK 3 ANGLE : 0.834 5259 REMARK 3 CHIRALITY : 0.058 587 REMARK 3 PLANARITY : 0.004 679 REMARK 3 DIHEDRAL : 16.017 1432 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 208:337) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3678 -23.0175 34.5774 REMARK 3 T TENSOR REMARK 3 T11: 0.5202 T22: 0.5711 REMARK 3 T33: 0.4327 T12: 0.0064 REMARK 3 T13: -0.0525 T23: -0.1342 REMARK 3 L TENSOR REMARK 3 L11: 2.8092 L22: 3.0861 REMARK 3 L33: 2.6446 L12: 0.7963 REMARK 3 L13: 0.5657 L23: -0.5104 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -0.3443 S13: 0.2284 REMARK 3 S21: 0.3895 S22: 0.0796 S23: -0.0983 REMARK 3 S31: -0.1579 S32: 0.1506 S33: -0.0413 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 338:500) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4143 -24.8928 24.3551 REMARK 3 T TENSOR REMARK 3 T11: 0.5287 T22: 0.5185 REMARK 3 T33: 0.4722 T12: 0.0330 REMARK 3 T13: 0.0420 T23: -0.1345 REMARK 3 L TENSOR REMARK 3 L11: 2.5025 L22: 3.5975 REMARK 3 L33: 3.4766 L12: 0.4752 REMARK 3 L13: 1.3786 L23: 1.2080 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: -0.0812 S13: 0.3226 REMARK 3 S21: 0.0984 S22: 0.0033 S23: -0.0332 REMARK 3 S31: -0.3777 S32: -0.4074 S33: 0.0852 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 208:337) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7198 -39.3279 3.1908 REMARK 3 T TENSOR REMARK 3 T11: 0.7256 T22: 0.4945 REMARK 3 T33: 0.5321 T12: 0.0067 REMARK 3 T13: 0.0623 T23: -0.1883 REMARK 3 L TENSOR REMARK 3 L11: 3.0523 L22: 2.0339 REMARK 3 L33: 3.3305 L12: 0.2948 REMARK 3 L13: -0.9999 L23: -0.6500 REMARK 3 S TENSOR REMARK 3 S11: -0.0724 S12: 0.1283 S13: -0.0119 REMARK 3 S21: -0.5828 S22: 0.1664 S23: -0.1518 REMARK 3 S31: 0.4892 S32: 0.0530 S33: -0.0526 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 338:500) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8906 -38.0031 12.2196 REMARK 3 T TENSOR REMARK 3 T11: 0.5868 T22: 0.4443 REMARK 3 T33: 0.4058 T12: -0.0313 REMARK 3 T13: -0.0114 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 2.4308 L22: 2.2151 REMARK 3 L33: 2.3267 L12: 0.2105 REMARK 3 L13: -0.3613 L23: 0.6024 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.0719 S13: -0.0401 REMARK 3 S21: -0.2095 S22: -0.0772 S23: -0.1193 REMARK 3 S31: 0.4509 S32: -0.1354 S33: -0.0305 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 6 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: SEGID A AND RESID 208:315 REMARK 3 SELECTION : SEGID B AND RESID 208:315 REMARK 3 ATOM PAIRS NUMBER : 873 REMARK 3 RMSD : 0.402 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: SEGID A AND RESID 320:337 REMARK 3 SELECTION : SEGID B AND RESID 320:337 REMARK 3 ATOM PAIRS NUMBER : 141 REMARK 3 RMSD : 0.221 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: SEGID A AND RESID 338:357 REMARK 3 SELECTION : SEGID B AND RESID 338:357 REMARK 3 ATOM PAIRS NUMBER : 150 REMARK 3 RMSD : 0.373 REMARK 3 NCS GROUP : 4 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: SEGID A AND RESID 370:418 REMARK 3 SELECTION : SEGID B AND RESID 370:418 REMARK 3 ATOM PAIRS NUMBER : 87 REMARK 3 RMSD : 0.514 REMARK 3 NCS GROUP : 5 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: SEGID A AND RESID 437:468 REMARK 3 SELECTION : SEGID B AND RESID 437:468 REMARK 3 ATOM PAIRS NUMBER : 244 REMARK 3 RMSD : 0.264 REMARK 3 NCS GROUP : 6 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: SEGID A AND RESID 481:500 REMARK 3 SELECTION : SEGID B AND RESID 481:500 REMARK 3 ATOM PAIRS NUMBER : 178 REMARK 3 RMSD : 0.446 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M9R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11999 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.178 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1CP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 20.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 20%(W/V) PEG3350, 0.2M REMARK 280 (NH4)2SO4 , PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.53500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 60.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.23500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.61750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.53500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.85250 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.23500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 60.53500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.85250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 60.53500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 14.61750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 198 REMARK 465 ARG A 199 REMARK 465 SER A 200 REMARK 465 PHE A 201 REMARK 465 SER A 202 REMARK 465 LYS A 203 REMARK 465 ALA A 204 REMARK 465 SER A 205 REMARK 465 GLY A 206 REMARK 465 PRO A 207 REMARK 465 LEU A 370 REMARK 465 ASP A 371 REMARK 465 SER A 372 REMARK 465 VAL A 373 REMARK 465 ASP A 374 REMARK 465 GLY A 375 REMARK 465 VAL A 376 REMARK 465 PRO A 377 REMARK 465 ALA A 378 REMARK 465 PHE A 379 REMARK 465 LEU A 380 REMARK 465 ARG A 381 REMARK 465 ARG A 382 REMARK 465 GLY A 383 REMARK 465 TRP A 384 REMARK 465 ASP A 385 REMARK 465 ASN A 386 REMARK 465 ARG A 387 REMARK 465 ASP A 388 REMARK 465 GLY A 389 REMARK 465 PRO A 390 REMARK 465 LEU A 391 REMARK 465 PHE A 392 REMARK 465 ASN A 393 REMARK 465 PHE A 394 REMARK 465 LEU A 395 REMARK 465 GLY A 396 REMARK 465 CYS A 397 REMARK 465 VAL A 398 REMARK 465 ARG A 399 REMARK 465 PRO A 400 REMARK 465 GLN A 401 REMARK 465 VAL A 402 REMARK 465 GLN A 403 REMARK 465 GLN A 404 REMARK 465 VAL A 405 REMARK 465 TRP A 406 REMARK 465 SER A 501 REMARK 465 ALA A 502 REMARK 465 VAL A 503 REMARK 465 ASN B 198 REMARK 465 ARG B 199 REMARK 465 SER B 200 REMARK 465 PHE B 201 REMARK 465 SER B 202 REMARK 465 LYS B 203 REMARK 465 ALA B 204 REMARK 465 SER B 205 REMARK 465 GLY B 206 REMARK 465 PRO B 207 REMARK 465 GLY B 360 REMARK 465 GLU B 361 REMARK 465 ARG B 362 REMARK 465 ARG B 363 REMARK 465 ASP B 364 REMARK 465 ASN B 365 REMARK 465 GLY B 366 REMARK 465 PHE B 367 REMARK 465 PRO B 368 REMARK 465 VAL B 369 REMARK 465 LEU B 370 REMARK 465 ASP B 371 REMARK 465 SER B 372 REMARK 465 VAL B 373 REMARK 465 ASP B 374 REMARK 465 GLY B 375 REMARK 465 VAL B 376 REMARK 465 PRO B 377 REMARK 465 ALA B 378 REMARK 465 PHE B 379 REMARK 465 LEU B 380 REMARK 465 ARG B 381 REMARK 465 ARG B 382 REMARK 465 GLY B 383 REMARK 465 TRP B 384 REMARK 465 ASP B 385 REMARK 465 ASN B 386 REMARK 465 ARG B 387 REMARK 465 ASP B 388 REMARK 465 GLY B 389 REMARK 465 PRO B 390 REMARK 465 LEU B 391 REMARK 465 PHE B 392 REMARK 465 ASN B 393 REMARK 465 PHE B 394 REMARK 465 LEU B 395 REMARK 465 GLY B 396 REMARK 465 CYS B 397 REMARK 465 VAL B 398 REMARK 465 ARG B 399 REMARK 465 PRO B 400 REMARK 465 GLN B 401 REMARK 465 VAL B 402 REMARK 465 GLN B 403 REMARK 465 GLN B 404 REMARK 465 VAL B 405 REMARK 465 TRP B 406 REMARK 465 ALA B 423 REMARK 465 GLN B 424 REMARK 465 TYR B 425 REMARK 465 VAL B 426 REMARK 465 SER B 427 REMARK 465 TRP B 428 REMARK 465 ARG B 429 REMARK 465 ASN B 430 REMARK 465 SER B 431 REMARK 465 ALA B 432 REMARK 465 ARG B 433 REMARK 465 PHE B 469 REMARK 465 GLN B 470 REMARK 465 THR B 471 REMARK 465 SER B 472 REMARK 465 GLN B 473 REMARK 465 GLY B 474 REMARK 465 SER B 475 REMARK 465 ASN B 476 REMARK 465 ILE B 477 REMARK 465 LEU B 478 REMARK 465 LYS B 479 REMARK 465 GLN B 480 REMARK 465 SER B 501 REMARK 465 ALA B 502 REMARK 465 VAL B 503 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 407 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 407 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 257 154.45 -46.12 REMARK 500 ASN A 285 83.84 42.01 REMARK 500 HIS A 301 83.01 -32.23 REMARK 500 ASN A 348 -7.35 72.41 REMARK 500 ARG A 359 16.50 -143.72 REMARK 500 SER A 475 -32.33 169.02 REMARK 500 ASN A 476 164.83 177.02 REMARK 500 GLU A 497 -140.62 -113.91 REMARK 500 ALA A 498 52.44 -99.46 REMARK 500 TYR B 210 136.43 -38.46 REMARK 500 PRO B 257 152.91 -48.72 REMARK 500 ARG B 259 69.09 -108.79 REMARK 500 ASN B 260 151.96 -46.12 REMARK 500 ASN B 285 77.62 49.84 REMARK 500 HIS B 301 -39.23 -34.75 REMARK 500 GLU B 302 -23.65 62.94 REMARK 500 SER B 303 33.25 -76.98 REMARK 500 GLU B 318 -99.51 39.99 REMARK 500 GLU B 497 -131.91 -118.49 REMARK 500 ALA B 498 38.00 -92.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 4M9R A 198 503 UNP P42573 CED3_CAEEL 198 503 DBREF 4M9R B 198 503 UNP P42573 CED3_CAEEL 198 503 SEQADV 4M9R SER A 358 UNP P42573 CYS 358 CONFLICT SEQADV 4M9R SER B 358 UNP P42573 CYS 358 CONFLICT SEQRES 1 A 306 ASN ARG SER PHE SER LYS ALA SER GLY PRO THR GLN TYR SEQRES 2 A 306 ILE PHE HIS GLU GLU ASP MET ASN PHE VAL ASP ALA PRO SEQRES 3 A 306 THR ILE SER ARG VAL PHE ASP GLU LYS THR MET TYR ARG SEQRES 4 A 306 ASN PHE SER SER PRO ARG GLY MET CYS LEU ILE ILE ASN SEQRES 5 A 306 ASN GLU HIS PHE GLU GLN MET PRO THR ARG ASN GLY THR SEQRES 6 A 306 LYS ALA ASP LYS ASP ASN LEU THR ASN LEU PHE ARG CYS SEQRES 7 A 306 MET GLY TYR THR VAL ILE CYS LYS ASP ASN LEU THR GLY SEQRES 8 A 306 ARG GLY MET LEU LEU THR ILE ARG ASP PHE ALA LYS HIS SEQRES 9 A 306 GLU SER HIS GLY ASP SER ALA ILE LEU VAL ILE LEU SER SEQRES 10 A 306 HIS GLY GLU GLU ASN VAL ILE ILE GLY VAL ASP ASP ILE SEQRES 11 A 306 PRO ILE SER THR HIS GLU ILE TYR ASP LEU LEU ASN ALA SEQRES 12 A 306 ALA ASN ALA PRO ARG LEU ALA ASN LYS PRO LYS ILE VAL SEQRES 13 A 306 PHE VAL GLN ALA SER ARG GLY GLU ARG ARG ASP ASN GLY SEQRES 14 A 306 PHE PRO VAL LEU ASP SER VAL ASP GLY VAL PRO ALA PHE SEQRES 15 A 306 LEU ARG ARG GLY TRP ASP ASN ARG ASP GLY PRO LEU PHE SEQRES 16 A 306 ASN PHE LEU GLY CYS VAL ARG PRO GLN VAL GLN GLN VAL SEQRES 17 A 306 TRP ARG LYS LYS PRO SER GLN ALA ASP ILE LEU ILE ALA SEQRES 18 A 306 TYR ALA THR THR ALA GLN TYR VAL SER TRP ARG ASN SER SEQRES 19 A 306 ALA ARG GLY SER TRP PHE ILE GLN ALA VAL CYS GLU VAL SEQRES 20 A 306 PHE SER THR HIS ALA LYS ASP MET ASP VAL VAL GLU LEU SEQRES 21 A 306 LEU THR GLU VAL ASN LYS LYS VAL ALA CYS GLY PHE GLN SEQRES 22 A 306 THR SER GLN GLY SER ASN ILE LEU LYS GLN MET PRO GLU SEQRES 23 A 306 MET THR SER ARG LEU LEU LYS LYS PHE TYR PHE TRP PRO SEQRES 24 A 306 GLU ALA ARG ASN SER ALA VAL SEQRES 1 B 306 ASN ARG SER PHE SER LYS ALA SER GLY PRO THR GLN TYR SEQRES 2 B 306 ILE PHE HIS GLU GLU ASP MET ASN PHE VAL ASP ALA PRO SEQRES 3 B 306 THR ILE SER ARG VAL PHE ASP GLU LYS THR MET TYR ARG SEQRES 4 B 306 ASN PHE SER SER PRO ARG GLY MET CYS LEU ILE ILE ASN SEQRES 5 B 306 ASN GLU HIS PHE GLU GLN MET PRO THR ARG ASN GLY THR SEQRES 6 B 306 LYS ALA ASP LYS ASP ASN LEU THR ASN LEU PHE ARG CYS SEQRES 7 B 306 MET GLY TYR THR VAL ILE CYS LYS ASP ASN LEU THR GLY SEQRES 8 B 306 ARG GLY MET LEU LEU THR ILE ARG ASP PHE ALA LYS HIS SEQRES 9 B 306 GLU SER HIS GLY ASP SER ALA ILE LEU VAL ILE LEU SER SEQRES 10 B 306 HIS GLY GLU GLU ASN VAL ILE ILE GLY VAL ASP ASP ILE SEQRES 11 B 306 PRO ILE SER THR HIS GLU ILE TYR ASP LEU LEU ASN ALA SEQRES 12 B 306 ALA ASN ALA PRO ARG LEU ALA ASN LYS PRO LYS ILE VAL SEQRES 13 B 306 PHE VAL GLN ALA SER ARG GLY GLU ARG ARG ASP ASN GLY SEQRES 14 B 306 PHE PRO VAL LEU ASP SER VAL ASP GLY VAL PRO ALA PHE SEQRES 15 B 306 LEU ARG ARG GLY TRP ASP ASN ARG ASP GLY PRO LEU PHE SEQRES 16 B 306 ASN PHE LEU GLY CYS VAL ARG PRO GLN VAL GLN GLN VAL SEQRES 17 B 306 TRP ARG LYS LYS PRO SER GLN ALA ASP ILE LEU ILE ALA SEQRES 18 B 306 TYR ALA THR THR ALA GLN TYR VAL SER TRP ARG ASN SER SEQRES 19 B 306 ALA ARG GLY SER TRP PHE ILE GLN ALA VAL CYS GLU VAL SEQRES 20 B 306 PHE SER THR HIS ALA LYS ASP MET ASP VAL VAL GLU LEU SEQRES 21 B 306 LEU THR GLU VAL ASN LYS LYS VAL ALA CYS GLY PHE GLN SEQRES 22 B 306 THR SER GLN GLY SER ASN ILE LEU LYS GLN MET PRO GLU SEQRES 23 B 306 MET THR SER ARG LEU LEU LYS LYS PHE TYR PHE TRP PRO SEQRES 24 B 306 GLU ALA ARG ASN SER ALA VAL FORMUL 3 HOH *7(H2 O) HELIX 1 1 HIS A 213 MET A 217 5 5 HELIX 2 2 ASP A 221 PHE A 229 1 9 HELIX 3 3 GLY A 261 MET A 276 1 16 HELIX 4 4 THR A 287 ALA A 299 1 13 HELIX 5 5 SER A 330 LEU A 337 1 8 HELIX 6 6 SER A 435 ALA A 449 1 15 HELIX 7 7 ASP A 453 PHE A 469 1 17 HELIX 8 8 HIS B 213 MET B 217 5 5 HELIX 9 9 ASP B 221 PHE B 229 1 9 HELIX 10 10 GLY B 261 MET B 276 1 16 HELIX 11 11 THR B 287 HIS B 301 1 15 HELIX 12 12 THR B 331 LEU B 338 1 8 HELIX 13 13 SER B 435 ALA B 449 1 15 HELIX 14 14 ASP B 453 GLY B 468 1 16 SHEET 1 A12 TYR A 278 ASP A 284 0 SHEET 2 A12 GLY A 243 ASN A 249 1 N CYS A 245 O THR A 279 SHEET 3 A12 SER A 307 LEU A 313 1 O VAL A 311 N ILE A 248 SHEET 4 A12 LYS A 351 GLN A 356 1 O PHE A 354 N LEU A 310 SHEET 5 A12 ILE A 415 TYR A 419 1 O ALA A 418 N VAL A 353 SHEET 6 A12 GLU A 483 SER A 486 -1 O THR A 485 N ILE A 417 SHEET 7 A12 GLU B 483 SER B 486 -1 O MET B 484 N SER A 486 SHEET 8 A12 ILE B 415 THR B 421 -1 N ILE B 417 O THR B 485 SHEET 9 A12 LYS B 351 SER B 358 1 N VAL B 353 O ALA B 418 SHEET 10 A12 ALA B 308 GLU B 317 1 N LEU B 310 O PHE B 354 SHEET 11 A12 GLY B 243 ASN B 249 1 N ILE B 248 O VAL B 311 SHEET 12 A12 TYR B 278 CYS B 282 1 O ILE B 281 N ILE B 247 SHEET 1 B12 TYR A 278 ASP A 284 0 SHEET 2 B12 GLY A 243 ASN A 249 1 N CYS A 245 O THR A 279 SHEET 3 B12 SER A 307 LEU A 313 1 O VAL A 311 N ILE A 248 SHEET 4 B12 LYS A 351 GLN A 356 1 O PHE A 354 N LEU A 310 SHEET 5 B12 ILE A 415 TYR A 419 1 O ALA A 418 N VAL A 353 SHEET 6 B12 GLU A 483 SER A 486 -1 O THR A 485 N ILE A 417 SHEET 7 B12 GLU B 483 SER B 486 -1 O MET B 484 N SER A 486 SHEET 8 B12 ILE B 415 THR B 421 -1 N ILE B 417 O THR B 485 SHEET 9 B12 LYS B 351 SER B 358 1 N VAL B 353 O ALA B 418 SHEET 10 B12 ALA B 308 GLU B 317 1 N LEU B 310 O PHE B 354 SHEET 11 B12 VAL B 320 ILE B 322 -1 O VAL B 320 N GLU B 317 SHEET 12 B12 PRO B 328 SER B 330 -1 O ILE B 329 N ILE B 321 SHEET 1 C 2 HIS A 315 GLU A 317 0 SHEET 2 C 2 VAL A 320 ILE A 322 -1 O ILE A 322 N HIS A 315 SHEET 1 D 2 PHE A 367 PRO A 368 0 SHEET 2 D 2 LYS B 408 LYS B 409 -1 O LYS B 409 N PHE A 367 SHEET 1 E 2 THR A 471 GLN A 473 0 SHEET 2 E 2 ASN A 476 LEU A 478 -1 O LEU A 478 N THR A 471 CRYST1 121.070 121.070 58.470 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017103 0.00000