HEADER PROTEIN BINDING 19-AUG-13 4MBO TITLE 1.65 ANGSTROM CRYSTAL STRUCTURE OF SERINE-RICH REPEAT ADHESION TITLE 2 GLYCOPROTEIN (SRR1) FROM STREPTOCOCCUS AGALACTIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE-RICH REPEAT ADHESION GLYCOPROTEIN (SRR1); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 311-641; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 211110; SOURCE 4 STRAIN: NEM316; SOURCE 5 GENE: GBS1529; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 28A KEYWDS CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 2 STRUCTURAL GENOMICS, SERINE-RICH REPEAT, SRR1, FIBRINOGEN BINDING KEYWDS 3 GLYCOPROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,H.S.SEO,R.SEEPERSAUD, AUTHOR 2 K.S.DORAN,T.M.IVERSON,P.M.SULLAM,W.F.ANDERSON,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 5 20-SEP-23 4MBO 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4MBO 1 REMARK REVDAT 3 01-JAN-14 4MBO 1 JRNL REVDAT 2 13-NOV-13 4MBO 1 JRNL REVDAT 1 06-NOV-13 4MBO 0 JRNL AUTH H.S.SEO,G.MINASOV,R.SEEPERSAUD,K.S.DORAN,I.DUBROVSKA, JRNL AUTH 2 L.SHUVALOVA,W.F.ANDERSON,T.M.IVERSON,P.M.SULLAM JRNL TITL CHARACTERIZATION OF FIBRINOGEN BINDING BY GLYCOPROTEINS SRR1 JRNL TITL 2 AND SRR2 OF STREPTOCOCCUS AGALACTIAE. JRNL REF J.BIOL.CHEM. V. 288 35982 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24165132 JRNL DOI 10.1074/JBC.M113.513358 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 40447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2141 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 437 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2708 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2532 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3706 ; 1.554 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5880 ; 0.696 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 4.656 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;38.732 ;26.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;10.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3196 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 593 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1369 ; 1.518 ; 1.582 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1368 ; 1.515 ; 1.580 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1748 ; 2.407 ; 2.358 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1749 ; 2.406 ; 2.360 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1339 ; 2.325 ; 1.844 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1340 ; 2.324 ; 1.846 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1959 ; 3.499 ; 2.670 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3358 ; 6.788 ;15.132 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3107 ; 6.605 ;13.818 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 317 A 441 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4301 14.4420 21.4085 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0327 REMARK 3 T33: 0.0361 T12: 0.0134 REMARK 3 T13: 0.0299 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.7381 L22: 1.1014 REMARK 3 L33: 1.1468 L12: 0.4465 REMARK 3 L13: -0.0190 L23: 0.5269 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: -0.0462 S13: 0.1081 REMARK 3 S21: 0.0284 S22: 0.0157 S23: 0.0941 REMARK 3 S31: -0.1219 S32: -0.0754 S33: -0.1044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 442 A 490 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8669 0.8444 4.2094 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0531 REMARK 3 T33: 0.0636 T12: -0.0047 REMARK 3 T13: -0.0181 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.9723 L22: 0.0646 REMARK 3 L33: 1.6178 L12: -0.2062 REMARK 3 L13: 1.1089 L23: -0.1700 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: -0.0633 S13: -0.1325 REMARK 3 S21: -0.0058 S22: 0.0255 S23: 0.0310 REMARK 3 S31: 0.0381 S32: -0.0819 S33: -0.0788 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 491 A 531 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4246 8.5729 -11.2178 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0382 REMARK 3 T33: 0.0158 T12: 0.0036 REMARK 3 T13: 0.0129 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.9633 L22: 1.7238 REMARK 3 L33: 1.9098 L12: 0.0360 REMARK 3 L13: 1.3469 L23: 0.2021 REMARK 3 S TENSOR REMARK 3 S11: -0.0779 S12: 0.0091 S13: -0.0804 REMARK 3 S21: 0.0153 S22: 0.0610 S23: 0.0588 REMARK 3 S31: -0.0703 S32: -0.0425 S33: 0.0170 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 532 A 607 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9242 11.9527 -12.1512 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0398 REMARK 3 T33: 0.0087 T12: 0.0008 REMARK 3 T13: -0.0008 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.3138 L22: 0.9555 REMARK 3 L33: 1.1818 L12: -0.1208 REMARK 3 L13: 0.6343 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: 0.0699 S13: 0.0163 REMARK 3 S21: 0.0220 S22: 0.0181 S23: -0.0760 REMARK 3 S31: -0.0674 S32: 0.0621 S33: 0.0516 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 608 A 627 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1615 8.1671 -8.5440 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0494 REMARK 3 T33: 0.0368 T12: 0.0292 REMARK 3 T13: 0.0078 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.7985 L22: 1.3486 REMARK 3 L33: 4.1698 L12: 0.7672 REMARK 3 L13: 3.0167 L23: 0.5544 REMARK 3 S TENSOR REMARK 3 S11: -0.1794 S12: -0.2974 S13: 0.0404 REMARK 3 S21: 0.0764 S22: 0.0750 S23: 0.1723 REMARK 3 S31: -0.2624 S32: -0.3331 S33: 0.1044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97928 REMARK 200 MONOCHROMATOR : SI {1,1,1} REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42747 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1R17 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.6MG/ML, 0.5M SODIUM REMARK 280 CLORIDE, 0.01M TRIS-HCL, PH 8.3. SCREEN: PACT (B11), 0.2M REMARK 280 CALCIUM CHLORIDE, 0.1M TRIS-HCL, PH 6.0, 20% (W/V) PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.67800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.61750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.67800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.61750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.35600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 808 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1000 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 310 REMARK 465 GLU A 311 REMARK 465 VAL A 312 REMARK 465 SER A 313 REMARK 465 ASP A 314 REMARK 465 THR A 315 REMARK 465 GLU A 316 REMARK 465 THR A 527 REMARK 465 SER A 528 REMARK 465 GLY A 529 REMARK 465 ILE A 628 REMARK 465 SER A 629 REMARK 465 GLY A 630 REMARK 465 ASP A 631 REMARK 465 SER A 632 REMARK 465 ASP A 633 REMARK 465 ALA A 634 REMARK 465 ASN A 635 REMARK 465 ALA A 636 REMARK 465 GLU A 637 REMARK 465 ILE A 638 REMARK 465 LYS A 639 REMARK 465 LEU A 640 REMARK 465 LEU A 641 REMARK 465 LEU A 642 REMARK 465 GLU A 643 REMARK 465 HIS A 644 REMARK 465 HIS A 645 REMARK 465 HIS A 646 REMARK 465 HIS A 647 REMARK 465 HIS A 648 REMARK 465 HIS A 649 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 446 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 320 -4.29 84.87 REMARK 500 ASN A 455 -122.97 56.65 REMARK 500 ASP A 525 -81.28 -85.89 REMARK 500 ASN A 536 -4.99 68.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 349 OG REMARK 620 2 SER A 349 O 72.0 REMARK 620 3 SER A 349 O 71.8 15.2 REMARK 620 4 HOH A 868 O 78.7 59.1 74.3 REMARK 620 5 HOH A1064 O 125.3 60.2 68.7 55.4 REMARK 620 6 HOH A1064 O 137.3 66.0 65.8 86.0 31.7 REMARK 620 7 HOH A1068 O 94.9 88.6 73.6 147.6 108.1 77.4 REMARK 620 8 HOH A1182 O 139.0 137.2 145.0 93.6 77.4 81.0 110.7 REMARK 620 9 HOH A1183 O 76.6 145.6 136.4 127.6 154.2 140.3 80.2 76.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 408 O REMARK 620 2 HOH A 821 O 80.6 REMARK 620 3 HOH A 826 O 98.3 70.5 REMARK 620 4 HOH A 856 O 93.5 69.5 135.6 REMARK 620 5 HOH A 869 O 87.2 140.0 149.4 73.5 REMARK 620 6 HOH A 915 O 142.9 126.3 72.7 118.4 84.7 REMARK 620 7 HOH A 915 O 171.5 101.1 90.1 79.4 86.2 41.6 REMARK 620 8 HOH A1120 O 90.1 147.6 80.5 142.4 69.4 53.3 92.7 REMARK 620 9 HOH A1120 O 69.3 138.2 85.5 138.4 68.3 74.0 113.0 20.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1014 O REMARK 620 2 HOH A1043 O 141.7 REMARK 620 3 HOH A1047 O 107.6 99.3 REMARK 620 4 HOH A1110 O 84.5 131.0 70.1 REMARK 620 5 HOH A1134 O 73.9 102.2 54.1 107.6 REMARK 620 6 HOH A1158 O 79.4 63.7 119.1 163.3 72.2 REMARK 620 7 HOH A1158 O 56.1 86.5 146.0 129.4 91.9 35.5 REMARK 620 8 HOH A1193 O 120.2 67.0 116.8 75.8 165.8 108.7 96.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 917 O REMARK 620 2 HOH A1077 O 63.0 REMARK 620 3 HOH A1177 O 100.9 84.9 REMARK 620 4 HOH A1177 O 94.6 45.7 44.3 REMARK 620 5 HOH A1196 O 112.6 113.7 146.2 132.5 REMARK 620 6 HOH A1197 O 91.7 149.9 117.5 161.7 59.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 706 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MBR RELATED DB: PDB REMARK 900 RELATED ID: IDP92612 RELATED DB: TARGETTRACK DBREF 4MBO A 311 641 UNP Q8E473 Q8E473_STRA3 311 641 SEQADV 4MBO MET A 310 UNP Q8E473 INITIATING METHIONINE SEQADV 4MBO LEU A 642 UNP Q8E473 EXPRESSION TAG SEQADV 4MBO GLU A 643 UNP Q8E473 EXPRESSION TAG SEQADV 4MBO HIS A 644 UNP Q8E473 EXPRESSION TAG SEQADV 4MBO HIS A 645 UNP Q8E473 EXPRESSION TAG SEQADV 4MBO HIS A 646 UNP Q8E473 EXPRESSION TAG SEQADV 4MBO HIS A 647 UNP Q8E473 EXPRESSION TAG SEQADV 4MBO HIS A 648 UNP Q8E473 EXPRESSION TAG SEQADV 4MBO HIS A 649 UNP Q8E473 EXPRESSION TAG SEQRES 1 A 340 MET GLU VAL SER ASP THR GLU MET LEU GLY LYS ASP VAL SEQRES 2 A 340 SER SER GLU LEU GLN LYS VAL ASN ILE ALA LEU LYS ASP SEQRES 3 A 340 ASN THR LEU SER GLU PRO GLY THR VAL LYS LEU ASP SER SEQRES 4 A 340 SER GLU ASN LEU VAL LEU ASN PHE ALA PHE SER ILE ALA SEQRES 5 A 340 SER VAL ASN GLU GLY ASP VAL PHE THR VAL LYS LEU SER SEQRES 6 A 340 ASP ASN LEU ASP THR GLN GLY ILE GLY THR ILE LEU LYS SEQRES 7 A 340 VAL GLN ASP ILE MET ASP GLU THR GLY GLN LEU LEU ALA SEQRES 8 A 340 THR GLY SER TYR SER PRO LEU THR HIS ASN ILE THR TYR SEQRES 9 A 340 THR TRP THR ARG TYR ALA SER THR LEU ASN ASN ILE LYS SEQRES 10 A 340 ALA ARG VAL ASN MET PRO VAL TRP PRO ASP GLN ARG ILE SEQRES 11 A 340 ILE SER LYS THR THR SER ASP LYS GLN CYS PHE THR ALA SEQRES 12 A 340 THR LEU ASN ASN GLN VAL ALA SER ILE GLU GLU ARG VAL SEQRES 13 A 340 GLN TYR ASN SER PRO SER VAL THR GLU HIS THR ASN VAL SEQRES 14 A 340 LYS THR ASN VAL ARG SER ARG ILE MET LYS LEU ASP ASP SEQRES 15 A 340 GLU ARG GLN THR GLU THR TYR ILE THR GLN ILE ASN PRO SEQRES 16 A 340 GLU GLY LYS GLU MET TYR PHE ALA SER GLY LEU GLY ASN SEQRES 17 A 340 LEU TYR THR ILE ILE GLY SER ASP GLY THR SER GLY SER SEQRES 18 A 340 PRO VAL ASN LEU LEU ASN ALA GLU VAL LYS ILE LEU LYS SEQRES 19 A 340 THR ASN SER LYS ASN LEU THR ASP SER MET ASP GLN ASN SEQRES 20 A 340 TYR ASP SER PRO GLU PHE GLU ASP VAL THR SER GLN TYR SEQRES 21 A 340 SER TYR THR ASN ASP GLY SER LYS ILE THR ILE ASP TRP SEQRES 22 A 340 LYS THR ASN SER ILE SER SER THR THR SER TYR VAL VAL SEQRES 23 A 340 LEU VAL LYS ILE PRO MLZ GLN SER GLY VAL LEU TYR SER SEQRES 24 A 340 THR VAL SER ASP ILE ASN GLN THR TYR GLY SER LYS TYR SEQRES 25 A 340 SER TYR GLY HIS THR ASN ILE SER GLY ASP SER ASP ALA SEQRES 26 A 340 ASN ALA GLU ILE LYS LEU LEU LEU GLU HIS HIS HIS HIS SEQRES 27 A 340 HIS HIS MODRES 4MBO MLZ A 601 LYS N-METHYL-LYSINE HET MLZ A 601 10 HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET CA A 704 1 HET BME A 705 4 HET MES A 706 12 HETNAM MLZ N-METHYL-LYSINE HETNAM CA CALCIUM ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 1 MLZ C7 H16 N2 O2 FORMUL 2 CA 4(CA 2+) FORMUL 6 BME C2 H6 O S FORMUL 7 MES C6 H13 N O4 S FORMUL 8 HOH *437(H2 O) HELIX 1 1 VAL A 322 LEU A 326 5 5 HELIX 2 2 THR A 416 THR A 421 1 6 HELIX 3 3 ASN A 545 LEU A 549 5 5 HELIX 4 4 THR A 566 TYR A 569 5 4 SHEET 1 A 4 GLN A 327 LYS A 334 0 SHEET 2 A 4 LEU A 352 ILE A 360 -1 O SER A 359 N GLN A 327 SHEET 3 A 4 ILE A 425 PRO A 435 -1 O MET A 431 N LEU A 354 SHEET 4 A 4 LEU A 377 ASP A 378 -1 N ASP A 378 O TRP A 434 SHEET 1 B 7 THR A 343 LYS A 345 0 SHEET 2 B 7 GLN A 457 GLN A 466 1 O ARG A 464 N VAL A 344 SHEET 3 B 7 GLN A 448 LEU A 454 -1 N LEU A 454 O GLN A 457 SHEET 4 B 7 VAL A 368 LEU A 373 -1 N LYS A 372 O THR A 453 SHEET 5 B 7 ASN A 410 TRP A 415 -1 O ILE A 411 N VAL A 371 SHEET 6 B 7 LEU A 398 TYR A 404 -1 N THR A 401 O THR A 414 SHEET 7 B 7 ILE A 391 MET A 392 -1 N ILE A 391 O LEU A 399 SHEET 1 C 6 SER A 471 GLU A 474 0 SHEET 2 C 6 VAL A 478 ASP A 490 -1 O VAL A 482 N SER A 471 SHEET 3 C 6 THR A 495 ILE A 502 -1 O GLN A 501 N ARG A 483 SHEET 4 C 6 SER A 592 PRO A 600 -1 O TYR A 593 N ILE A 502 SHEET 5 C 6 GLU A 538 THR A 544 -1 N LYS A 540 O LEU A 596 SHEET 6 C 6 GLU A 563 ASP A 564 -1 O GLU A 563 N LYS A 543 SHEET 1 D 4 SER A 471 GLU A 474 0 SHEET 2 D 4 VAL A 478 ASP A 490 -1 O VAL A 482 N SER A 471 SHEET 3 D 4 MET A 509 PHE A 511 -1 O TYR A 510 N LYS A 479 SHEET 4 D 4 SER A 586 ILE A 587 -1 O ILE A 587 N MET A 509 SHEET 1 E 5 TYR A 571 ASN A 573 0 SHEET 2 E 5 ILE A 578 ASP A 581 -1 O THR A 579 N THR A 572 SHEET 3 E 5 TYR A 519 SER A 524 -1 N THR A 520 O ILE A 580 SHEET 4 E 5 GLY A 604 SER A 611 -1 O SER A 611 N TYR A 519 SHEET 5 E 5 GLY A 618 HIS A 625 -1 O TYR A 623 N LEU A 606 LINK C PRO A 600 N MLZ A 601 1555 1555 1.34 LINK C MLZ A 601 N GLN A 602 1555 1555 1.33 LINK OG ASER A 349 CA CA A 704 1555 1555 2.46 LINK O BSER A 349 CA CA A 704 1555 1555 2.55 LINK O ASER A 349 CA CA A 704 1555 1555 2.73 LINK O THR A 408 CA CA A 701 1555 1555 2.32 LINK CA CA A 701 O HOH A 821 1555 1555 2.45 LINK CA CA A 701 O HOH A 826 1555 1555 2.32 LINK CA CA A 701 O HOH A 856 1555 1555 2.73 LINK CA CA A 701 O HOH A 869 1555 1555 2.41 LINK CA CA A 701 O BHOH A 915 1555 1555 2.18 LINK CA CA A 701 O AHOH A 915 1555 1555 2.28 LINK CA CA A 701 O AHOH A1120 1555 1555 1.85 LINK CA CA A 701 O BHOH A1120 1555 1555 3.11 LINK CA CA A 702 O HOH A1014 1555 1555 2.60 LINK CA CA A 702 O HOH A1043 1555 1555 2.51 LINK CA CA A 702 O HOH A1047 1555 1555 2.54 LINK CA CA A 702 O HOH A1110 1555 1555 2.25 LINK CA CA A 702 O HOH A1134 1555 1555 2.41 LINK CA CA A 702 O AHOH A1158 1555 1555 2.28 LINK CA CA A 702 O BHOH A1158 1555 1555 2.82 LINK CA CA A 702 O HOH A1193 1555 1555 2.44 LINK CA CA A 703 O BHOH A 917 1555 1555 2.37 LINK CA CA A 703 O AHOH A1077 1555 1555 2.36 LINK CA CA A 703 O AHOH A1177 1555 1555 2.32 LINK CA CA A 703 O BHOH A1177 1555 1555 2.71 LINK CA CA A 703 O HOH A1196 1555 1555 2.48 LINK CA CA A 703 O HOH A1197 1555 1555 2.10 LINK CA CA A 704 O HOH A 868 1555 1555 2.72 LINK CA CA A 704 O AHOH A1064 1555 1555 2.04 LINK CA CA A 704 O BHOH A1064 1555 1555 2.78 LINK CA CA A 704 O HOH A1068 1555 1555 2.51 LINK CA CA A 704 O HOH A1182 1555 1555 2.31 LINK CA CA A 704 O HOH A1183 1555 1555 2.50 SITE 1 AC1 8 THR A 408 GLU A 462 HOH A 821 HOH A 826 SITE 2 AC1 8 HOH A 856 HOH A 869 HOH A 915 HOH A1120 SITE 1 AC2 7 HOH A1014 HOH A1043 HOH A1047 HOH A1110 SITE 2 AC2 7 HOH A1134 HOH A1158 HOH A1193 SITE 1 AC3 6 HOH A 917 HOH A1077 HOH A1177 HOH A1192 SITE 2 AC3 6 HOH A1196 HOH A1197 SITE 1 AC4 6 SER A 349 HOH A 868 HOH A1064 HOH A1068 SITE 2 AC4 6 HOH A1182 HOH A1183 SITE 1 AC5 6 LYS A 372 CYS A 449 THR A 451 ALA A 452 SITE 2 AC5 6 THR A 453 HOH A1223 SITE 1 AC6 6 THR A 473 GLN A 615 GLY A 618 HOH A 837 SITE 2 AC6 6 HOH A1166 HOH A1213 CRYST1 73.356 83.235 57.056 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013632 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017527 0.00000