data_4MG2 # _entry.id 4MG2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4MG2 NDB NA2711 RCSB RCSB081865 WWPDB D_1000081865 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4MG2 _pdbx_database_status.recvd_initial_deposition_date 2013-08-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, B.' 1 'Gan, J.' 2 'Yang, C.G.' 3 # _citation.id primary _citation.title ;The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin ; _citation.journal_abbrev 'Sci China Chem' _citation.journal_volume 57 _citation.page_first 307 _citation.page_last 313 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country CN _citation.journal_id_ISSN 1674-7291 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1007/s11426-013-5029-z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, B.' 1 primary 'Gan, J.' 2 primary 'Yang, C.G.' 3 # _cell.entry_id 4MG2 _cell.length_a 129.997 _cell.length_b 129.997 _cell.length_c 84.825 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MG2 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2' 23322.709 1 1.14.11.33 F102A ? ? 2 polymer syn DNA-1 4618.023 1 ? ? ? ? 3 polymer syn DNA-2 4572.039 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 30 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB homolog 2, DNA oxidative demethylase ALKBH2, Oxy DC1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVAGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVV RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLM ; ;MSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVAGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPW IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVV RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLM ; A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DA)(DC)(DA)(DG)(DT)(DG)(DA)(DG)(DA)(DC)(DA)(DT)' TCGACAGTGAGACAT B ? 3 polydeoxyribonucleotide no yes '(DC)(DT)(DG)(DT)(DC)(DT)(DC)(DA)(2YR)(DT)(DG)(DT)(DC)(DG)(DC)' CTGTCTCAXTGTCGC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 TRP n 1 4 ARG n 1 5 HIS n 1 6 ILE n 1 7 ARG n 1 8 ALA n 1 9 GLU n 1 10 GLY n 1 11 LEU n 1 12 ASP n 1 13 SER n 1 14 SER n 1 15 TYR n 1 16 THR n 1 17 VAL n 1 18 LEU n 1 19 PHE n 1 20 GLY n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 ALA n 1 25 ASP n 1 26 GLU n 1 27 ILE n 1 28 PHE n 1 29 GLN n 1 30 GLU n 1 31 LEU n 1 32 GLU n 1 33 LYS n 1 34 GLU n 1 35 VAL n 1 36 GLU n 1 37 TYR n 1 38 PHE n 1 39 THR n 1 40 GLY n 1 41 ALA n 1 42 LEU n 1 43 ALA n 1 44 ARG n 1 45 VAL n 1 46 GLN n 1 47 VAL n 1 48 ALA n 1 49 GLY n 1 50 LYS n 1 51 TRP n 1 52 HIS n 1 53 SER n 1 54 VAL n 1 55 PRO n 1 56 ARG n 1 57 LYS n 1 58 GLN n 1 59 ALA n 1 60 THR n 1 61 TYR n 1 62 GLY n 1 63 ASP n 1 64 ALA n 1 65 GLY n 1 66 LEU n 1 67 THR n 1 68 TYR n 1 69 THR n 1 70 PHE n 1 71 SER n 1 72 GLY n 1 73 LEU n 1 74 THR n 1 75 LEU n 1 76 SER n 1 77 PRO n 1 78 LYS n 1 79 PRO n 1 80 TRP n 1 81 ILE n 1 82 PRO n 1 83 VAL n 1 84 LEU n 1 85 GLU n 1 86 ARG n 1 87 ILE n 1 88 ARG n 1 89 ASP n 1 90 HIS n 1 91 VAL n 1 92 SER n 1 93 GLY n 1 94 VAL n 1 95 THR n 1 96 GLY n 1 97 GLN n 1 98 THR n 1 99 PHE n 1 100 ASN n 1 101 PHE n 1 102 VAL n 1 103 LEU n 1 104 ILE n 1 105 ASN n 1 106 ARG n 1 107 TYR n 1 108 LYS n 1 109 ASP n 1 110 GLY n 1 111 SER n 1 112 ASP n 1 113 HIS n 1 114 ILE n 1 115 CYS n 1 116 GLU n 1 117 HIS n 1 118 ARG n 1 119 ASP n 1 120 ASP n 1 121 GLU n 1 122 ARG n 1 123 GLU n 1 124 LEU n 1 125 ALA n 1 126 PRO n 1 127 GLY n 1 128 SER n 1 129 PRO n 1 130 ILE n 1 131 ALA n 1 132 SER n 1 133 VAL n 1 134 SER n 1 135 PHE n 1 136 GLY n 1 137 ALA n 1 138 SER n 1 139 ARG n 1 140 ASP n 1 141 PHE n 1 142 VAL n 1 143 PHE n 1 144 ARG n 1 145 HIS n 1 146 LYS n 1 147 ASP n 1 148 SER n 1 149 ARG n 1 150 GLY n 1 151 LYS n 1 152 SER n 1 153 PRO n 1 154 SER n 1 155 ARG n 1 156 ARG n 1 157 VAL n 1 158 ALA n 1 159 VAL n 1 160 VAL n 1 161 ARG n 1 162 LEU n 1 163 PRO n 1 164 LEU n 1 165 ALA n 1 166 HIS n 1 167 GLY n 1 168 SER n 1 169 LEU n 1 170 LEU n 1 171 MET n 1 172 MET n 1 173 ASN n 1 174 HIS n 1 175 PRO n 1 176 THR n 1 177 ASN n 1 178 THR n 1 179 HIS n 1 180 TRP n 1 181 TYR n 1 182 HIS n 1 183 SER n 1 184 LEU n 1 185 PRO n 1 186 VAL n 1 187 ARG n 1 188 LYS n 1 189 LYS n 1 190 VAL n 1 191 LEU n 1 192 ALA n 1 193 PRO n 1 194 ARG n 1 195 VAL n 1 196 ASN n 1 197 LEU n 1 198 THR n 1 199 PHE n 1 200 ARG n 1 201 LYS n 1 202 ILE n 1 203 LEU n 1 204 LEU n 1 205 MET n 2 1 DT n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DA n 2 7 DG n 2 8 DT n 2 9 DG n 2 10 DA n 2 11 DG n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 3 1 DC n 3 2 DT n 3 3 DG n 3 4 DT n 3 5 DC n 3 6 DT n 3 7 DC n 3 8 DA n 3 9 2YR n 3 10 DT n 3 11 DG n 3 12 DT n 3 13 DC n 3 14 DG n 3 15 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ALKBH2, ABH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Synthetic Source' 3 1 sample ? ? ? ? ? 'Synthetic Source' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB2_HUMAN Q6NS38 1 ;SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; 56 ? 2 PDB 4MG2 4MG2 2 ? ? ? 3 PDB 4MG2 4MG2 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4MG2 A 2 ? 204 ? Q6NS38 56 ? 258 ? 56 258 2 2 4MG2 B 1 ? 15 ? 4MG2 10 ? 24 ? 10 24 3 3 4MG2 C 1 ? 15 ? 4MG2 27 ? 41 ? 27 41 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MG2 MET A 1 ? UNP Q6NS38 ? ? 'INITIATING METHIONINE' 55 1 1 4MG2 SER A 13 ? UNP Q6NS38 CYS 67 CONFLICT 67 2 1 4MG2 ALA A 48 ? UNP Q6NS38 PHE 102 'ENGINEERED MUTATION' 102 3 1 4MG2 SER A 111 ? UNP Q6NS38 CYS 165 CONFLICT 165 4 1 4MG2 CYS A 115 ? UNP Q6NS38 GLY 169 CONFLICT 169 5 1 4MG2 SER A 138 ? UNP Q6NS38 CYS 192 CONFLICT 192 6 1 4MG2 MET A 205 ? UNP Q6NS38 ? ? 'EXPRESSION TAG' 259 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YR non-polymer . ;2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C11 H18 N3 O7 P S' 367.315 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4MG2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.19 _exptl_crystal.density_percent_sol 61.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;12% PEG 5000, 100mM sodium chloride, 50mM Magnesium chloride, 100mM cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-07-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 4MG2 _reflns.observed_criterion_sigma_I 1.5 _reflns.observed_criterion_sigma_F 1.5 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.30 _reflns.number_obs 19087 _reflns.number_all 19224 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.30 2.38 99.9 ? ? ? ? ? ? ? ? ? ? 1 1 2.38 2.59 99.9 ? ? ? ? ? ? ? ? ? ? 2 1 2.59 2.90 99.9 ? ? ? ? ? ? ? ? ? ? 3 1 2.90 3.44 100 ? ? ? ? ? ? ? ? ? ? 4 1 3.44 3.93 100 ? ? ? ? ? ? ? ? ? ? 5 1 3.93 50 97.5 ? ? ? ? ? ? ? ? ? ? 6 1 # _refine.entry_id 4MG2 _refine.ls_number_reflns_obs 18106 _refine.ls_number_reflns_all 19087 _refine.pdbx_ls_sigma_I 3. _refine.pdbx_ls_sigma_F 1.5 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.21 _refine.ls_R_factor_obs 0.23607 _refine.ls_R_factor_all 0.2785 _refine.ls_R_factor_R_work 0.23389 _refine.ls_R_factor_R_free 0.27858 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 983 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.913 _refine.B_iso_mean 52.325 _refine.aniso_B[1][1] -0.07 _refine.aniso_B[2][2] -0.07 _refine.aniso_B[3][3] 0.24 _refine.aniso_B[1][2] -0.07 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.261 _refine.pdbx_overall_ESU_R_Free 0.225 _refine.overall_SU_ML 0.160 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 13.713 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1565 _refine_hist.pdbx_number_atoms_nucleic_acid 550 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 2146 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.017 ? 2224 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 1843 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.348 1.706 ? 3113 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.453 3.000 ? 4242 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.494 5.000 ? 192 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 29.451 22.000 ? 75 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 18.009 15.000 ? 266 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 16.019 15.000 ? 15 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.112 0.200 ? 318 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.021 ? 2107 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 533 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.303 _refine_ls_shell.d_res_low 2.362 _refine_ls_shell.number_reflns_R_work 1312 _refine_ls_shell.R_factor_R_work 0.309 _refine_ls_shell.percent_reflns_obs 99.50 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4MG2 _struct.title 'ALKBH2 F102A cross-linked to undamaged dsDNA' _struct.pdbx_descriptor 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 (E.C.1.14.11.33)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MG2 _struct_keywords.pdbx_keywords OXIDOREDUCTASE/DNA _struct_keywords.text ;Structural Genomics, Enzyme Function Initiative, Center for Eukaryotic Structural Genomics, CESG, Rossmann Fold, OXIDOREDUCTASE-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 20 ? VAL A 35 ? GLY A 74 VAL A 89 1 ? 16 HELX_P HELX_P2 2 ILE A 27 ? GLY A 96 ? ILE A 81 GLY A 150 1 ? 70 HELX_P HELX_P3 3 PRO A 175 ? HIS A 179 ? PRO A 229 HIS A 233 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? C DA 8 "O3'" ? ? ? 1_555 C 2YR 9 P ? ? C DA 34 C 2YR 35 1_555 ? ? ? ? ? ? ? 1.595 ? covale2 covale ? ? C 2YR 9 "O3'" ? ? ? 1_555 C DT 10 P ? ? C 2YR 35 C DT 36 1_555 ? ? ? ? ? ? ? 1.596 ? metalc1 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 301 A HOH 422 1_555 ? ? ? ? ? ? ? 2.039 ? metalc2 metalc ? ? A ASP 119 OD1 ? ? ? 1_555 D MG . MG ? ? A ASP 173 A MG 301 1_555 ? ? ? ? ? ? ? 2.194 ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 301 A HOH 424 1_555 ? ? ? ? ? ? ? 2.247 ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 301 A HOH 423 1_555 ? ? ? ? ? ? ? 2.409 ? covale3 covale ? ? A CYS 115 SG ? ? ? 1_555 C 2YR 9 S ? ? A CYS 169 C 2YR 35 1_555 ? ? ? ? ? ? ? 2.100 ? hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 14 N1 ? ? B DC 11 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 14 O6 ? ? B DC 11 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 14 N2 ? ? B DC 11 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 12 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 12 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 12 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 12 N3 ? ? B DA 13 C DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 12 O4 ? ? B DA 13 C DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 14 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 14 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 14 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 15 C DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 15 C DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 17 C DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 8 N6 ? ? B DT 17 C DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 18 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 18 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 18 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 19 C DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 19 C DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 20 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 20 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 20 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 21 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 4 O4 ? ? B DA 21 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 22 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 22 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 22 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 23 C DT 28 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 174 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 228 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 175 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 229 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 4 ? ALA A 8 ? ARG A 58 ALA A 62 A 2 LEU A 11 ? VAL A 17 ? LEU A 65 VAL A 71 A 3 SER A 168 ? MET A 172 ? SER A 222 MET A 226 A 4 ILE A 130 ? GLY A 136 ? ILE A 184 GLY A 190 A 5 ARG A 194 ? ARG A 200 ? ARG A 248 ARG A 254 A 6 PHE A 101 ? TYR A 107 ? PHE A 155 TYR A 161 A 7 GLN A 58 ? GLY A 62 ? GLN A 112 GLY A 116 B 1 ARG A 44 ? VAL A 47 ? ARG A 98 VAL A 101 B 2 LYS A 50 ? SER A 53 ? LYS A 104 SER A 107 C 1 TYR A 68 ? PHE A 70 ? TYR A 122 PHE A 124 C 2 LEU A 73 ? LEU A 75 ? LEU A 127 LEU A 129 D 1 ILE A 114 ? HIS A 117 ? ILE A 168 HIS A 171 D 2 TRP A 180 ? LEU A 184 ? TRP A 234 LEU A 238 D 3 ARG A 139 ? HIS A 145 ? ARG A 193 HIS A 199 D 4 VAL A 159 ? LEU A 164 ? VAL A 213 LEU A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 60 O SER A 13 ? O SER A 67 A 2 3 N SER A 14 ? N SER A 68 O MET A 171 ? O MET A 225 A 3 4 O LEU A 170 ? O LEU A 224 N SER A 132 ? N SER A 186 A 4 5 N VAL A 133 ? N VAL A 187 O LEU A 197 ? O LEU A 251 A 5 6 O ARG A 194 ? O ARG A 248 N TYR A 107 ? N TYR A 161 A 6 7 O ILE A 104 ? O ILE A 158 N ALA A 59 ? N ALA A 113 B 1 2 N VAL A 45 ? N VAL A 99 O HIS A 52 ? O HIS A 106 C 1 2 N TYR A 68 ? N TYR A 122 O LEU A 75 ? O LEU A 129 D 1 2 N ILE A 114 ? N ILE A 168 O LEU A 184 ? O LEU A 238 D 2 3 O TYR A 181 ? O TYR A 235 N ARG A 144 ? N ARG A 198 D 3 4 N ARG A 139 ? N ARG A 193 O LEU A 164 ? O LEU A 218 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 117 ? HIS A 171 . ? 1_555 ? 2 AC1 6 ASP A 119 ? ASP A 173 . ? 1_555 ? 3 AC1 6 HIS A 182 ? HIS A 236 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 422 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 423 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 424 . ? 1_555 ? # _database_PDB_matrix.entry_id 4MG2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4MG2 _atom_sites.fract_transf_matrix[1][1] 0.007692 _atom_sites.fract_transf_matrix[1][2] 0.004441 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008883 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011789 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 55 55 MET MET A . n A 1 2 SER 2 56 56 SER SER A . n A 1 3 TRP 3 57 57 TRP TRP A . n A 1 4 ARG 4 58 58 ARG ARG A . n A 1 5 HIS 5 59 59 HIS HIS A . n A 1 6 ILE 6 60 60 ILE ILE A . n A 1 7 ARG 7 61 61 ARG ARG A . n A 1 8 ALA 8 62 62 ALA ALA A . n A 1 9 GLU 9 63 63 GLU GLU A . n A 1 10 GLY 10 64 64 GLY GLY A . n A 1 11 LEU 11 65 65 LEU LEU A . n A 1 12 ASP 12 66 66 ASP ASP A . n A 1 13 SER 13 67 67 SER SER A . n A 1 14 SER 14 68 68 SER SER A . n A 1 15 TYR 15 69 69 TYR TYR A . n A 1 16 THR 16 70 70 THR THR A . n A 1 17 VAL 17 71 71 VAL VAL A . n A 1 18 LEU 18 72 72 LEU LEU A . n A 1 19 PHE 19 73 73 PHE PHE A . n A 1 20 GLY 20 74 74 GLY GLY A . n A 1 21 LYS 21 75 75 LYS LYS A . n A 1 22 ALA 22 76 76 ALA ALA A . n A 1 23 GLU 23 77 77 GLU GLU A . n A 1 24 ALA 24 78 78 ALA ALA A . n A 1 25 ASP 25 79 79 ASP ASP A . n A 1 26 GLU 26 80 80 GLU GLU A . n A 1 27 ILE 27 81 81 ILE ILE A . n A 1 28 PHE 28 82 82 PHE PHE A . n A 1 29 GLN 29 83 83 GLN GLN A . n A 1 30 GLU 30 84 84 GLU GLU A . n A 1 31 LEU 31 85 85 LEU LEU A . n A 1 32 GLU 32 86 86 GLU GLU A . n A 1 33 LYS 33 87 87 LYS LYS A . n A 1 34 GLU 34 88 88 GLU GLU A . n A 1 35 VAL 35 89 89 VAL VAL A . n A 1 36 GLU 36 90 90 GLU GLU A . n A 1 37 TYR 37 91 91 TYR TYR A . n A 1 38 PHE 38 92 92 PHE PHE A . n A 1 39 THR 39 93 93 THR THR A . n A 1 40 GLY 40 94 94 GLY GLY A . n A 1 41 ALA 41 95 95 ALA ALA A . n A 1 42 LEU 42 96 96 LEU LEU A . n A 1 43 ALA 43 97 97 ALA ALA A . n A 1 44 ARG 44 98 98 ARG ARG A . n A 1 45 VAL 45 99 99 VAL VAL A . n A 1 46 GLN 46 100 100 GLN GLN A . n A 1 47 VAL 47 101 101 VAL VAL A . n A 1 48 ALA 48 102 102 ALA ALA A . n A 1 49 GLY 49 103 103 GLY GLY A . n A 1 50 LYS 50 104 104 LYS LYS A . n A 1 51 TRP 51 105 105 TRP TRP A . n A 1 52 HIS 52 106 106 HIS HIS A . n A 1 53 SER 53 107 107 SER SER A . n A 1 54 VAL 54 108 108 VAL VAL A . n A 1 55 PRO 55 109 109 PRO PRO A . n A 1 56 ARG 56 110 110 ARG ARG A . n A 1 57 LYS 57 111 111 LYS LYS A . n A 1 58 GLN 58 112 112 GLN GLN A . n A 1 59 ALA 59 113 113 ALA ALA A . n A 1 60 THR 60 114 114 THR THR A . n A 1 61 TYR 61 115 115 TYR TYR A . n A 1 62 GLY 62 116 116 GLY GLY A . n A 1 63 ASP 63 117 117 ASP ASP A . n A 1 64 ALA 64 118 118 ALA ALA A . n A 1 65 GLY 65 119 119 GLY GLY A . n A 1 66 LEU 66 120 120 LEU LEU A . n A 1 67 THR 67 121 121 THR THR A . n A 1 68 TYR 68 122 122 TYR TYR A . n A 1 69 THR 69 123 123 THR THR A . n A 1 70 PHE 70 124 124 PHE PHE A . n A 1 71 SER 71 125 125 SER SER A . n A 1 72 GLY 72 126 126 GLY GLY A . n A 1 73 LEU 73 127 127 LEU LEU A . n A 1 74 THR 74 128 128 THR THR A . n A 1 75 LEU 75 129 129 LEU LEU A . n A 1 76 SER 76 130 130 SER SER A . n A 1 77 PRO 77 131 131 PRO PRO A . n A 1 78 LYS 78 132 132 LYS LYS A . n A 1 79 PRO 79 133 133 PRO PRO A . n A 1 80 TRP 80 134 134 TRP TRP A . n A 1 81 ILE 81 135 135 ILE ILE A . n A 1 82 PRO 82 136 136 PRO PRO A . n A 1 83 VAL 83 137 137 VAL VAL A . n A 1 84 LEU 84 138 138 LEU LEU A . n A 1 85 GLU 85 139 139 GLU GLU A . n A 1 86 ARG 86 140 140 ARG ARG A . n A 1 87 ILE 87 141 141 ILE ILE A . n A 1 88 ARG 88 142 142 ARG ARG A . n A 1 89 ASP 89 143 143 ASP ASP A . n A 1 90 HIS 90 144 144 HIS HIS A . n A 1 91 VAL 91 145 145 VAL VAL A . n A 1 92 SER 92 146 146 SER SER A . n A 1 93 GLY 93 147 147 GLY GLY A . n A 1 94 VAL 94 148 148 VAL VAL A . n A 1 95 THR 95 149 149 THR THR A . n A 1 96 GLY 96 150 150 GLY GLY A . n A 1 97 GLN 97 151 151 GLN GLN A . n A 1 98 THR 98 152 152 THR THR A . n A 1 99 PHE 99 153 153 PHE PHE A . n A 1 100 ASN 100 154 154 ASN ASN A . n A 1 101 PHE 101 155 155 PHE PHE A . n A 1 102 VAL 102 156 156 VAL VAL A . n A 1 103 LEU 103 157 157 LEU LEU A . n A 1 104 ILE 104 158 158 ILE ILE A . n A 1 105 ASN 105 159 159 ASN ASN A . n A 1 106 ARG 106 160 160 ARG ARG A . n A 1 107 TYR 107 161 161 TYR TYR A . n A 1 108 LYS 108 162 162 LYS LYS A . n A 1 109 ASP 109 163 163 ASP ASP A . n A 1 110 GLY 110 164 164 GLY GLY A . n A 1 111 SER 111 165 165 SER SER A . n A 1 112 ASP 112 166 166 ASP ASP A . n A 1 113 HIS 113 167 167 HIS HIS A . n A 1 114 ILE 114 168 168 ILE ILE A . n A 1 115 CYS 115 169 169 CYS CYS A . n A 1 116 GLU 116 170 170 GLU GLU A . n A 1 117 HIS 117 171 171 HIS HIS A . n A 1 118 ARG 118 172 172 ARG ARG A . n A 1 119 ASP 119 173 173 ASP ASP A . n A 1 120 ASP 120 174 174 ASP ASP A . n A 1 121 GLU 121 175 175 GLU GLU A . n A 1 122 ARG 122 176 176 ARG ARG A . n A 1 123 GLU 123 177 177 GLU GLU A . n A 1 124 LEU 124 178 178 LEU LEU A . n A 1 125 ALA 125 179 179 ALA ALA A . n A 1 126 PRO 126 180 ? ? ? A . n A 1 127 GLY 127 181 ? ? ? A . n A 1 128 SER 128 182 182 SER SER A . n A 1 129 PRO 129 183 183 PRO PRO A . n A 1 130 ILE 130 184 184 ILE ILE A . n A 1 131 ALA 131 185 185 ALA ALA A . n A 1 132 SER 132 186 186 SER SER A . n A 1 133 VAL 133 187 187 VAL VAL A . n A 1 134 SER 134 188 188 SER SER A . n A 1 135 PHE 135 189 189 PHE PHE A . n A 1 136 GLY 136 190 190 GLY GLY A . n A 1 137 ALA 137 191 191 ALA ALA A . n A 1 138 SER 138 192 192 SER SER A . n A 1 139 ARG 139 193 193 ARG ARG A . n A 1 140 ASP 140 194 194 ASP ASP A . n A 1 141 PHE 141 195 195 PHE PHE A . n A 1 142 VAL 142 196 196 VAL VAL A . n A 1 143 PHE 143 197 197 PHE PHE A . n A 1 144 ARG 144 198 198 ARG ARG A . n A 1 145 HIS 145 199 199 HIS HIS A . n A 1 146 LYS 146 200 200 LYS LYS A . n A 1 147 ASP 147 201 201 ASP ASP A . n A 1 148 SER 148 202 202 SER SER A . n A 1 149 ARG 149 203 ? ? ? A . n A 1 150 GLY 150 204 ? ? ? A . n A 1 151 LYS 151 205 ? ? ? A . n A 1 152 SER 152 206 ? ? ? A . n A 1 153 PRO 153 207 ? ? ? A . n A 1 154 SER 154 208 ? ? ? A . n A 1 155 ARG 155 209 ? ? ? A . n A 1 156 ARG 156 210 ? ? ? A . n A 1 157 VAL 157 211 211 VAL VAL A . n A 1 158 ALA 158 212 212 ALA ALA A . n A 1 159 VAL 159 213 213 VAL VAL A . n A 1 160 VAL 160 214 214 VAL VAL A . n A 1 161 ARG 161 215 215 ARG ARG A . n A 1 162 LEU 162 216 216 LEU LEU A . n A 1 163 PRO 163 217 217 PRO PRO A . n A 1 164 LEU 164 218 218 LEU LEU A . n A 1 165 ALA 165 219 219 ALA ALA A . n A 1 166 HIS 166 220 220 HIS HIS A . n A 1 167 GLY 167 221 221 GLY GLY A . n A 1 168 SER 168 222 222 SER SER A . n A 1 169 LEU 169 223 223 LEU LEU A . n A 1 170 LEU 170 224 224 LEU LEU A . n A 1 171 MET 171 225 225 MET MET A . n A 1 172 MET 172 226 226 MET MET A . n A 1 173 ASN 173 227 227 ASN ASN A . n A 1 174 HIS 174 228 228 HIS HIS A . n A 1 175 PRO 175 229 229 PRO PRO A . n A 1 176 THR 176 230 230 THR THR A . n A 1 177 ASN 177 231 231 ASN ASN A . n A 1 178 THR 178 232 232 THR THR A . n A 1 179 HIS 179 233 233 HIS HIS A . n A 1 180 TRP 180 234 234 TRP TRP A . n A 1 181 TYR 181 235 235 TYR TYR A . n A 1 182 HIS 182 236 236 HIS HIS A . n A 1 183 SER 183 237 237 SER SER A . n A 1 184 LEU 184 238 238 LEU LEU A . n A 1 185 PRO 185 239 239 PRO PRO A . n A 1 186 VAL 186 240 240 VAL VAL A . n A 1 187 ARG 187 241 241 ARG ARG A . n A 1 188 LYS 188 242 242 LYS LYS A . n A 1 189 LYS 189 243 243 LYS LYS A . n A 1 190 VAL 190 244 244 VAL VAL A . n A 1 191 LEU 191 245 245 LEU LEU A . n A 1 192 ALA 192 246 246 ALA ALA A . n A 1 193 PRO 193 247 247 PRO PRO A . n A 1 194 ARG 194 248 248 ARG ARG A . n A 1 195 VAL 195 249 249 VAL VAL A . n A 1 196 ASN 196 250 250 ASN ASN A . n A 1 197 LEU 197 251 251 LEU LEU A . n A 1 198 THR 198 252 252 THR THR A . n A 1 199 PHE 199 253 253 PHE PHE A . n A 1 200 ARG 200 254 254 ARG ARG A . n A 1 201 LYS 201 255 255 LYS LYS A . n A 1 202 ILE 202 256 256 ILE ILE A . n A 1 203 LEU 203 257 257 LEU LEU A . n A 1 204 LEU 204 258 258 LEU LEU A . n A 1 205 MET 205 259 259 MET MET A . n B 2 1 DT 1 10 10 DT DT B . n B 2 2 DC 2 11 11 DC DC B . n B 2 3 DG 3 12 12 DG DG B . n B 2 4 DA 4 13 13 DA DA B . n B 2 5 DC 5 14 14 DC DC B . n B 2 6 DA 6 15 15 DA DA B . n B 2 7 DG 7 16 16 DG DG B . n B 2 8 DT 8 17 17 DT DT B . n B 2 9 DG 9 18 18 DG DG B . n B 2 10 DA 10 19 19 DA DA B . n B 2 11 DG 11 20 20 DG DG B . n B 2 12 DA 12 21 21 DA DA B . n B 2 13 DC 13 22 22 DC DC B . n B 2 14 DA 14 23 23 DA DA B . n B 2 15 DT 15 24 ? ? ? B . n C 3 1 DC 1 27 ? ? ? C . n C 3 2 DT 2 28 28 DT DT C . n C 3 3 DG 3 29 29 DG DG C . n C 3 4 DT 4 30 30 DT DT C . n C 3 5 DC 5 31 31 DC DC C . n C 3 6 DT 6 32 32 DT DT C . n C 3 7 DC 7 33 33 DC DC C . n C 3 8 DA 8 34 34 DA DA C . n C 3 9 2YR 9 35 35 2YR 2YR C . n C 3 10 DT 10 36 36 DT DT C . n C 3 11 DG 11 37 37 DG DG C . n C 3 12 DT 12 38 38 DT DT C . n C 3 13 DC 13 39 39 DC DC C . n C 3 14 DG 14 40 40 DG DG C . n C 3 15 DC 15 41 ? ? ? C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2830 ? 1 MORE -24 ? 1 'SSA (A^2)' 13870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 422 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 OD1 ? A ASP 119 ? A ASP 173 ? 1_555 88.5 ? 2 O ? E HOH . ? A HOH 422 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 424 ? 1_555 91.5 ? 3 OD1 ? A ASP 119 ? A ASP 173 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 424 ? 1_555 80.4 ? 4 O ? E HOH . ? A HOH 422 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 423 ? 1_555 78.6 ? 5 OD1 ? A ASP 119 ? A ASP 173 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 423 ? 1_555 163.1 ? 6 O ? E HOH . ? A HOH 424 ? 1_555 MG ? D MG . ? A MG 301 ? 1_555 O ? E HOH . ? A HOH 423 ? 1_555 88.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-26 2 'Structure model' 1 1 2014-06-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Non-polymer description' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 39.1349 -36.6023 -4.5372 0.0898 0.0855 0.0643 -0.0505 0.0604 -0.0289 2.3276 1.7256 1.3737 0.8648 -0.4922 0.0895 0.0565 0.0181 0.1222 0.0029 0.1362 -0.1123 -0.2030 0.0671 -0.1928 'X-RAY DIFFRACTION' 2 ? refined 48.8404 -18.9052 6.0432 0.1177 0.1149 0.1071 -0.0781 0.0639 -0.1026 3.1593 4.2340 14.5409 -0.9237 3.6100 -3.2116 -0.0728 -0.3007 0.1630 0.0496 0.3019 -0.3690 -0.2020 -0.0795 -0.2291 'X-RAY DIFFRACTION' 3 ? refined 50.8191 -18.3877 6.0862 0.3482 0.3058 0.1521 -0.1629 0.0602 -0.1572 5.5975 3.1209 5.5718 -0.0025 0.0052 -1.3494 0.0634 -0.0621 -0.1456 0.2322 0.2624 0.1752 -0.9836 0.2866 -0.3258 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 55 ? ? A 259 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 10 ? ? B 23 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 28 ? ? C 40 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.0 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 259 ? CB ? A MET 205 CB 2 1 Y 1 A MET 259 ? CG ? A MET 205 CG 3 1 Y 1 A MET 259 ? SD ? A MET 205 SD 4 1 Y 1 A MET 259 ? CE ? A MET 205 CE 5 1 Y 1 C DT 28 ? P ? C DT 2 P 6 1 Y 1 C DT 28 ? OP1 ? C DT 2 OP1 7 1 Y 1 C DT 28 ? OP2 ? C DT 2 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 180 ? A PRO 126 2 1 Y 1 A GLY 181 ? A GLY 127 3 1 Y 1 A ARG 203 ? A ARG 149 4 1 Y 1 A GLY 204 ? A GLY 150 5 1 Y 1 A LYS 205 ? A LYS 151 6 1 Y 1 A SER 206 ? A SER 152 7 1 Y 1 A PRO 207 ? A PRO 153 8 1 Y 1 A SER 208 ? A SER 154 9 1 Y 1 A ARG 209 ? A ARG 155 10 1 Y 1 A ARG 210 ? A ARG 156 11 1 Y 1 B DT 24 ? B DT 15 12 1 Y 1 C DC 27 ? C DC 1 13 1 Y 1 C DC 41 ? C DC 15 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4MG2 'double helix' 4MG2 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 14 1_555 0.343 0.277 -0.133 -4.213 -6.569 -0.497 1 B_DC11:DG40_C B 11 ? C 40 ? 19 1 1 B DG 3 1_555 C DC 13 1_555 -0.590 0.249 -0.247 -13.695 -17.110 5.182 2 B_DG12:DC39_C B 12 ? C 39 ? 19 1 1 B DA 4 1_555 C DT 12 1_555 -0.373 0.077 -0.023 6.265 -9.888 7.882 3 B_DA13:DT38_C B 13 ? C 38 ? 20 1 1 B DC 5 1_555 C DG 11 1_555 0.328 -0.040 -0.651 25.500 -7.604 1.050 4 B_DC14:DG37_C B 14 ? C 37 ? 19 1 1 B DA 6 1_555 C DT 10 1_555 -0.018 -0.119 0.004 2.548 -10.687 1.250 5 B_DA15:DT36_C B 15 ? C 36 ? 20 1 1 B DT 8 1_555 C DA 8 1_555 0.118 0.016 0.144 -0.810 -8.747 5.895 6 B_DT17:DA34_C B 17 ? C 34 ? 20 1 1 B DG 9 1_555 C DC 7 1_555 -0.192 0.028 0.254 10.205 -13.756 4.050 7 B_DG18:DC33_C B 18 ? C 33 ? 19 1 1 B DA 10 1_555 C DT 6 1_555 0.010 0.050 0.063 6.318 -13.838 -1.473 8 B_DA19:DT32_C B 19 ? C 32 ? 20 1 1 B DG 11 1_555 C DC 5 1_555 -0.002 0.135 0.141 4.016 -9.763 1.095 9 B_DG20:DC31_C B 20 ? C 31 ? 19 1 1 B DA 12 1_555 C DT 4 1_555 0.020 0.150 -0.090 0.810 -6.530 -2.418 10 B_DA21:DT30_C B 21 ? C 30 ? 20 1 1 B DC 13 1_555 C DG 3 1_555 -0.289 0.213 -0.908 21.831 -5.326 -4.101 11 B_DC22:DG29_C B 22 ? C 29 ? 19 1 1 B DA 14 1_555 C DT 2 1_555 -0.269 0.136 -0.364 1.855 -12.411 10.558 12 B_DA23:DT28_C B 23 ? C 28 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 14 1_555 B DG 3 1_555 C DC 13 1_555 -0.309 2.401 3.574 -1.604 4.400 38.830 2.988 0.243 3.822 6.589 2.402 39.100 1 BB_DC11DG12:DC39DG40_CC B 11 ? C 40 ? B 12 ? C 39 ? 1 B DG 3 1_555 C DC 13 1_555 B DA 4 1_555 C DT 12 1_555 -0.419 1.239 3.026 -6.019 1.087 31.297 2.069 -0.272 3.091 1.990 11.025 31.875 2 BB_DG12DA13:DT38DC39_CC B 12 ? C 39 ? B 13 ? C 38 ? 1 B DA 4 1_555 C DT 12 1_555 B DC 5 1_555 C DG 11 1_555 0.402 0.145 2.853 3.747 1.012 33.485 0.105 -0.157 2.883 1.748 -6.477 33.703 3 BB_DA13DC14:DG37DT38_CC B 13 ? C 38 ? B 14 ? C 37 ? 1 B DC 5 1_555 C DG 11 1_555 B DA 6 1_555 C DT 10 1_555 -0.270 -0.001 3.885 -6.750 -2.418 42.294 0.286 -0.434 3.876 -3.323 9.276 42.870 4 BB_DC14DA15:DT36DG37_CC B 14 ? C 37 ? B 15 ? C 36 ? 1 B DA 6 1_555 C DT 10 1_555 B DT 8 1_555 C DA 8 1_555 0.392 -1.141 6.640 0.179 5.881 65.754 -1.527 -0.346 6.530 5.406 -0.164 65.987 5 BB_DA15DT17:DA34DT36_CC B 15 ? C 36 ? B 17 ? C 34 ? 1 B DT 8 1_555 C DA 8 1_555 B DG 9 1_555 C DC 7 1_555 -0.736 0.589 3.094 -1.647 10.055 30.403 -0.714 1.042 3.159 18.531 3.036 32.026 6 BB_DT17DG18:DC33DA34_CC B 17 ? C 34 ? B 18 ? C 33 ? 1 B DG 9 1_555 C DC 7 1_555 B DA 10 1_555 C DT 6 1_555 -0.612 -0.006 3.397 -1.682 4.639 37.106 -0.646 0.723 3.395 7.251 2.628 37.421 7 BB_DG18DA19:DT32DC33_CC B 18 ? C 33 ? B 19 ? C 32 ? 1 B DA 10 1_555 C DT 6 1_555 B DG 11 1_555 C DC 5 1_555 0.238 -0.381 3.295 -3.124 6.400 32.175 -1.756 -0.949 3.127 11.373 5.552 32.933 8 BB_DA19DG20:DC31DT32_CC B 19 ? C 32 ? B 20 ? C 31 ? 1 B DG 11 1_555 C DC 5 1_555 B DA 12 1_555 C DT 4 1_555 -0.444 -0.589 3.292 0.793 2.300 34.272 -1.356 0.876 3.236 3.897 -1.343 34.356 9 BB_DG20DA21:DT30DC31_CC B 20 ? C 31 ? B 21 ? C 30 ? 1 B DA 12 1_555 C DT 4 1_555 B DC 13 1_555 C DG 3 1_555 0.218 0.005 2.801 6.786 3.757 26.662 -0.773 0.962 2.746 7.937 -14.333 27.747 10 BB_DA21DC22:DG29DT30_CC B 21 ? C 30 ? B 22 ? C 29 ? 1 B DC 13 1_555 C DG 3 1_555 B DA 14 1_555 C DT 2 1_555 0.576 0.264 3.785 -4.822 12.549 37.464 -1.311 -1.501 3.591 18.811 7.229 39.722 11 BB_DC22DA23:DT28DG29_CC B 22 ? C 29 ? B 23 ? C 28 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 301 301 MG MG A . E 5 HOH 1 401 401 HOH HOH A . E 5 HOH 2 402 402 HOH HOH A . E 5 HOH 3 403 403 HOH HOH A . E 5 HOH 4 404 404 HOH HOH A . E 5 HOH 5 405 405 HOH HOH A . E 5 HOH 6 406 406 HOH HOH A . E 5 HOH 7 407 407 HOH HOH A . E 5 HOH 8 408 408 HOH HOH A . E 5 HOH 9 409 409 HOH HOH A . E 5 HOH 10 410 410 HOH HOH A . E 5 HOH 11 411 411 HOH HOH A . E 5 HOH 12 412 412 HOH HOH A . E 5 HOH 13 413 413 HOH HOH A . E 5 HOH 14 414 414 HOH HOH A . E 5 HOH 15 415 415 HOH HOH A . E 5 HOH 16 416 416 HOH HOH A . E 5 HOH 17 417 417 HOH HOH A . E 5 HOH 18 418 418 HOH HOH A . E 5 HOH 19 419 419 HOH HOH A . E 5 HOH 20 420 420 HOH HOH A . E 5 HOH 21 421 421 HOH HOH A . E 5 HOH 22 422 422 HOH HOH A . E 5 HOH 23 423 423 HOH HOH A . E 5 HOH 24 424 424 HOH HOH A . E 5 HOH 25 425 425 HOH HOH A . E 5 HOH 26 426 426 HOH HOH A . E 5 HOH 27 427 427 HOH HOH A . E 5 HOH 28 428 428 HOH HOH A . F 5 HOH 1 101 101 HOH HOH B . F 5 HOH 2 102 102 HOH HOH B . #