data_4MH6 # _entry.id 4MH6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4MH6 RCSB RCSB081905 WWPDB D_1000081905 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id idp91505 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4MH6 _pdbx_database_status.recvd_initial_deposition_date 2013-08-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Minasov, G.' 1 'Wawrzak, Z.' 2 'Shuvalova, L.' 3 'Winsor, J.' 4 'Dubrovska, I.' 5 'Grimshaw, S.' 6 'Kwon, K.' 7 'Anderson, W.F.' 8 'Center for Structural Genomics of Infectious Diseases (CSGID)' 9 # _citation.id primary _citation.title '2.8 Angstrom Crystal Structure of Type III Secretion Protein YscO from Vibrio parahaemolyticus.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Minasov, G.' 1 primary 'Wawrzak, Z.' 2 primary 'Shuvalova, L.' 3 primary 'Winsor, J.' 4 primary 'Dubrovska, I.' 5 primary 'Grimshaw, S.' 6 primary 'Kwon, K.' 7 primary 'Anderson, W.F.' 8 # _cell.entry_id 4MH6 _cell.length_a 149.114 _cell.length_b 149.114 _cell.length_c 63.422 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MH6 _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative type III secretion protein YscO' 21322.688 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 water nat water 18.015 93 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGVDLGTENLYFQSNA(MSE)IERLLEIKKIRADRADKAVQRQEYRVANVAAELQKAERSVADYHVWR QEEEERRFAKAKQQTVLLKELETLRQEIALLREREAELKQRVAEVKVTLEQERTLLKQKQQEALQAHKTKEKFVQLQQQE IAEQSRQQQYQEELEQEEFRTVDII ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSNAMIERLLEIKKIRADRADKAVQRQEYRVANVAAELQKAERSVADYHVWRQEEEERRF AKAKQQTVLLKELETLRQEIALLREREAELKQRVAEVKVTLEQERTLLKQKQQEALQAHKTKEKFVQLQQQEIAEQSRQQ QYQEELEQEEFRTVDII ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier idp91505 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 ASN n 1 24 ALA n 1 25 MSE n 1 26 ILE n 1 27 GLU n 1 28 ARG n 1 29 LEU n 1 30 LEU n 1 31 GLU n 1 32 ILE n 1 33 LYS n 1 34 LYS n 1 35 ILE n 1 36 ARG n 1 37 ALA n 1 38 ASP n 1 39 ARG n 1 40 ALA n 1 41 ASP n 1 42 LYS n 1 43 ALA n 1 44 VAL n 1 45 GLN n 1 46 ARG n 1 47 GLN n 1 48 GLU n 1 49 TYR n 1 50 ARG n 1 51 VAL n 1 52 ALA n 1 53 ASN n 1 54 VAL n 1 55 ALA n 1 56 ALA n 1 57 GLU n 1 58 LEU n 1 59 GLN n 1 60 LYS n 1 61 ALA n 1 62 GLU n 1 63 ARG n 1 64 SER n 1 65 VAL n 1 66 ALA n 1 67 ASP n 1 68 TYR n 1 69 HIS n 1 70 VAL n 1 71 TRP n 1 72 ARG n 1 73 GLN n 1 74 GLU n 1 75 GLU n 1 76 GLU n 1 77 GLU n 1 78 ARG n 1 79 ARG n 1 80 PHE n 1 81 ALA n 1 82 LYS n 1 83 ALA n 1 84 LYS n 1 85 GLN n 1 86 GLN n 1 87 THR n 1 88 VAL n 1 89 LEU n 1 90 LEU n 1 91 LYS n 1 92 GLU n 1 93 LEU n 1 94 GLU n 1 95 THR n 1 96 LEU n 1 97 ARG n 1 98 GLN n 1 99 GLU n 1 100 ILE n 1 101 ALA n 1 102 LEU n 1 103 LEU n 1 104 ARG n 1 105 GLU n 1 106 ARG n 1 107 GLU n 1 108 ALA n 1 109 GLU n 1 110 LEU n 1 111 LYS n 1 112 GLN n 1 113 ARG n 1 114 VAL n 1 115 ALA n 1 116 GLU n 1 117 VAL n 1 118 LYS n 1 119 VAL n 1 120 THR n 1 121 LEU n 1 122 GLU n 1 123 GLN n 1 124 GLU n 1 125 ARG n 1 126 THR n 1 127 LEU n 1 128 LEU n 1 129 LYS n 1 130 GLN n 1 131 LYS n 1 132 GLN n 1 133 GLN n 1 134 GLU n 1 135 ALA n 1 136 LEU n 1 137 GLN n 1 138 ALA n 1 139 HIS n 1 140 LYS n 1 141 THR n 1 142 LYS n 1 143 GLU n 1 144 LYS n 1 145 PHE n 1 146 VAL n 1 147 GLN n 1 148 LEU n 1 149 GLN n 1 150 GLN n 1 151 GLN n 1 152 GLU n 1 153 ILE n 1 154 ALA n 1 155 GLU n 1 156 GLN n 1 157 SER n 1 158 ARG n 1 159 GLN n 1 160 GLN n 1 161 GLN n 1 162 TYR n 1 163 GLN n 1 164 GLU n 1 165 GLU n 1 166 LEU n 1 167 GLU n 1 168 GLN n 1 169 GLU n 1 170 GLU n 1 171 PHE n 1 172 ARG n 1 173 THR n 1 174 VAL n 1 175 ASP n 1 176 ILE n 1 177 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VP1669, yscO' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'RIMD 2210633' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio parahaemolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223926 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta gami 2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q87P49_VIBPA _struct_ref.pdbx_db_accession Q87P49 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIERLLEIKKIRADRADKAVQRQEYRVANVAAELQKAERSVADYHVWRQEEEERRFAKAKQQTVLLKELETLRQEIALLR EREAELKQRVAEVKVTLEQERTLLKQKQQEALQAHKTKEKFVQLQQQEIAEQSRQQQYQEELEQEEFRTVDII ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MH6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 25 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 177 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q87P49 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 153 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 153 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MH6 MSE A 1 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -23 1 1 4MH6 HIS A 2 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -22 2 1 4MH6 HIS A 3 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -21 3 1 4MH6 HIS A 4 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -20 4 1 4MH6 HIS A 5 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -19 5 1 4MH6 HIS A 6 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -18 6 1 4MH6 HIS A 7 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -17 7 1 4MH6 SER A 8 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -16 8 1 4MH6 SER A 9 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -15 9 1 4MH6 GLY A 10 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -14 10 1 4MH6 VAL A 11 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -13 11 1 4MH6 ASP A 12 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -12 12 1 4MH6 LEU A 13 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -11 13 1 4MH6 GLY A 14 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -10 14 1 4MH6 THR A 15 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -9 15 1 4MH6 GLU A 16 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -8 16 1 4MH6 ASN A 17 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -7 17 1 4MH6 LEU A 18 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -6 18 1 4MH6 TYR A 19 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -5 19 1 4MH6 PHE A 20 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -4 20 1 4MH6 GLN A 21 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -3 21 1 4MH6 SER A 22 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -2 22 1 4MH6 ASN A 23 ? UNP Q87P49 ? ? 'EXPRESSION TAG' -1 23 1 4MH6 ALA A 24 ? UNP Q87P49 ? ? 'EXPRESSION TAG' 0 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4MH6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.13 _exptl_crystal.density_percent_sol 70.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details ;Protein: 2.28 mG/mL, 0.5 M Sodium chloride, 0.01 M Tris-HCL buffer pH 8.3; Screen: JCSG+ (C9), 0.1M Sodium/Potasium phosphate pH 6.2, 25% (v/v) 1,2 Propanediol, 10% (v/v) Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2013-08-20 _diffrn_detector.details 'Beryllium lenses' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Diamond _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97872 # _reflns.entry_id 4MH6 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.80 _reflns.number_obs 9084 _reflns.number_all 9084 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.139 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.3 _reflns.B_iso_Wilson_estimate 55.3 _reflns.pdbx_redundancy 9.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.603 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 10.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 436 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4MH6 _refine.ls_number_reflns_obs 8645 _refine.ls_number_reflns_all 8645 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.24 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.69 _refine.ls_R_factor_obs 0.19195 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18946 _refine.ls_R_factor_R_free 0.24308 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 434 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.907 _refine.B_iso_mean 52.031 _refine.aniso_B[1][1] 0.46 _refine.aniso_B[2][2] 0.46 _refine.aniso_B[3][3] -0.93 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model 'Thermal Factors Individually Refined' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.397 _refine.pdbx_overall_ESU_R_Free 0.286 _refine.overall_SU_ML 0.187 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 17.508 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1347 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1450 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 29.24 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.010 0.019 ? 1394 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 1383 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.649 1.968 ? 1869 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.718 3.000 ? 3167 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 1.935 5.000 ? 164 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 24.165 25.000 ? 86 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 11.605 15.000 ? 294 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13.841 15.000 ? 16 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.085 0.200 ? 201 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.019 0.020 ? 1602 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.017 0.020 ? 334 ? 'X-RAY DIFFRACTION' r_mcbond_it 2.496 2.644 ? 650 ? 'X-RAY DIFFRACTION' r_mcbond_other 2.468 2.635 ? 649 ? 'X-RAY DIFFRACTION' r_mcangle_it 4.262 3.951 ? 816 ? 'X-RAY DIFFRACTION' r_mcangle_other 4.260 3.963 ? 817 ? 'X-RAY DIFFRACTION' r_scbond_it 3.759 3.149 ? 744 ? 'X-RAY DIFFRACTION' r_scbond_other 3.553 3.125 ? 737 ? 'X-RAY DIFFRACTION' r_scangle_other 5.917 4.531 ? 1042 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 8.740 21.218 ? 1692 ? 'X-RAY DIFFRACTION' r_long_range_B_other 8.690 21.086 ? 1679 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 2.872 _refine_ls_shell.number_reflns_R_work 612 _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.percent_reflns_obs 98.62 _refine_ls_shell.R_factor_R_free 0.232 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 612 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4MH6 _struct.title '2.8 Angstrom Crystal Structure of Type III Secretion Protein YscO from Vibrio parahaemolyticus' _struct.pdbx_descriptor 'Putative type III secretion protein YscO' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MH6 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 17 ? GLN A 85 ? ASN A -7 GLN A 61 1 ? 69 HELX_P HELX_P2 2 LEU A 89 ? GLN A 168 ? LEU A 65 GLN A 144 1 ? 80 HELX_P HELX_P3 3 GLU A 169 ? PHE A 171 ? GLU A 145 PHE A 147 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 24 C ? ? ? 1_555 A MSE 25 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 25 C ? ? ? 1_555 A ILE 26 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 15 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id -9 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLU _struct_mon_prot_cis.pdbx_label_seq_id_2 16 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLU _struct_mon_prot_cis.pdbx_auth_seq_id_2 -8 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.55 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PO4 A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PO4 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLN A 45 ? GLN A 21 . ? 5_554 ? 2 AC1 5 ARG A 46 ? ARG A 22 . ? 5_554 ? 3 AC1 5 ALA A 52 ? ALA A 28 . ? 1_555 ? 4 AC1 5 ALA A 55 ? ALA A 31 . ? 1_555 ? 5 AC1 5 ALA A 56 ? ALA A 32 . ? 1_555 ? 6 AC2 5 ARG A 125 ? ARG A 101 . ? 5_554 ? 7 AC2 5 LEU A 128 ? LEU A 104 . ? 5_554 ? 8 AC2 5 GLN A 132 ? GLN A 108 . ? 1_555 ? 9 AC2 5 GLN A 132 ? GLN A 108 . ? 5_554 ? 10 AC2 5 HOH D . ? HOH A 322 . ? 1_555 ? # _database_PDB_matrix.entry_id 4MH6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4MH6 _atom_sites.fract_transf_matrix[1][1] 0.006706 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006706 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015767 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -23 ? ? ? A . n A 1 2 HIS 2 -22 ? ? ? A . n A 1 3 HIS 3 -21 ? ? ? A . n A 1 4 HIS 4 -20 ? ? ? A . n A 1 5 HIS 5 -19 ? ? ? A . n A 1 6 HIS 6 -18 ? ? ? A . n A 1 7 HIS 7 -17 ? ? ? A . n A 1 8 SER 8 -16 ? ? ? A . n A 1 9 SER 9 -15 ? ? ? A . n A 1 10 GLY 10 -14 ? ? ? A . n A 1 11 VAL 11 -13 ? ? ? A . n A 1 12 ASP 12 -12 ? ? ? A . n A 1 13 LEU 13 -11 ? ? ? A . n A 1 14 GLY 14 -10 -10 GLY GLY A . n A 1 15 THR 15 -9 -9 THR THR A . n A 1 16 GLU 16 -8 -8 GLU GLU A . n A 1 17 ASN 17 -7 -7 ASN ASN A . n A 1 18 LEU 18 -6 -6 LEU LEU A . n A 1 19 TYR 19 -5 -5 TYR TYR A . n A 1 20 PHE 20 -4 -4 PHE PHE A . n A 1 21 GLN 21 -3 -3 GLN GLN A . n A 1 22 SER 22 -2 -2 SER SER A . n A 1 23 ASN 23 -1 -1 ASN ASN A . n A 1 24 ALA 24 0 0 ALA ALA A . n A 1 25 MSE 25 1 1 MSE MSE A . n A 1 26 ILE 26 2 2 ILE ILE A . n A 1 27 GLU 27 3 3 GLU GLU A . n A 1 28 ARG 28 4 4 ARG ARG A . n A 1 29 LEU 29 5 5 LEU LEU A . n A 1 30 LEU 30 6 6 LEU LEU A . n A 1 31 GLU 31 7 7 GLU GLU A . n A 1 32 ILE 32 8 8 ILE ILE A . n A 1 33 LYS 33 9 9 LYS LYS A . n A 1 34 LYS 34 10 10 LYS LYS A . n A 1 35 ILE 35 11 11 ILE ILE A . n A 1 36 ARG 36 12 12 ARG ARG A . n A 1 37 ALA 37 13 13 ALA ALA A . n A 1 38 ASP 38 14 14 ASP ASP A . n A 1 39 ARG 39 15 15 ARG ARG A . n A 1 40 ALA 40 16 16 ALA ALA A . n A 1 41 ASP 41 17 17 ASP ASP A . n A 1 42 LYS 42 18 18 LYS LYS A . n A 1 43 ALA 43 19 19 ALA ALA A . n A 1 44 VAL 44 20 20 VAL VAL A . n A 1 45 GLN 45 21 21 GLN GLN A . n A 1 46 ARG 46 22 22 ARG ARG A . n A 1 47 GLN 47 23 23 GLN GLN A . n A 1 48 GLU 48 24 24 GLU GLU A . n A 1 49 TYR 49 25 25 TYR TYR A . n A 1 50 ARG 50 26 26 ARG ARG A . n A 1 51 VAL 51 27 27 VAL VAL A . n A 1 52 ALA 52 28 28 ALA ALA A . n A 1 53 ASN 53 29 29 ASN ASN A . n A 1 54 VAL 54 30 30 VAL VAL A . n A 1 55 ALA 55 31 31 ALA ALA A . n A 1 56 ALA 56 32 32 ALA ALA A . n A 1 57 GLU 57 33 33 GLU GLU A . n A 1 58 LEU 58 34 34 LEU LEU A . n A 1 59 GLN 59 35 35 GLN GLN A . n A 1 60 LYS 60 36 36 LYS LYS A . n A 1 61 ALA 61 37 37 ALA ALA A . n A 1 62 GLU 62 38 38 GLU GLU A . n A 1 63 ARG 63 39 39 ARG ARG A . n A 1 64 SER 64 40 40 SER SER A . n A 1 65 VAL 65 41 41 VAL VAL A . n A 1 66 ALA 66 42 42 ALA ALA A . n A 1 67 ASP 67 43 43 ASP ASP A . n A 1 68 TYR 68 44 44 TYR TYR A . n A 1 69 HIS 69 45 45 HIS HIS A . n A 1 70 VAL 70 46 46 VAL VAL A . n A 1 71 TRP 71 47 47 TRP TRP A . n A 1 72 ARG 72 48 48 ARG ARG A . n A 1 73 GLN 73 49 49 GLN GLN A . n A 1 74 GLU 74 50 50 GLU GLU A . n A 1 75 GLU 75 51 51 GLU GLU A . n A 1 76 GLU 76 52 52 GLU GLU A . n A 1 77 GLU 77 53 53 GLU GLU A . n A 1 78 ARG 78 54 54 ARG ARG A . n A 1 79 ARG 79 55 55 ARG ARG A . n A 1 80 PHE 80 56 56 PHE PHE A . n A 1 81 ALA 81 57 57 ALA ALA A . n A 1 82 LYS 82 58 58 LYS LYS A . n A 1 83 ALA 83 59 59 ALA ALA A . n A 1 84 LYS 84 60 60 LYS LYS A . n A 1 85 GLN 85 61 61 GLN GLN A . n A 1 86 GLN 86 62 62 GLN GLN A . n A 1 87 THR 87 63 63 THR THR A . n A 1 88 VAL 88 64 64 VAL VAL A . n A 1 89 LEU 89 65 65 LEU LEU A . n A 1 90 LEU 90 66 66 LEU LEU A . n A 1 91 LYS 91 67 67 LYS LYS A . n A 1 92 GLU 92 68 68 GLU GLU A . n A 1 93 LEU 93 69 69 LEU LEU A . n A 1 94 GLU 94 70 70 GLU GLU A . n A 1 95 THR 95 71 71 THR THR A . n A 1 96 LEU 96 72 72 LEU LEU A . n A 1 97 ARG 97 73 73 ARG ARG A . n A 1 98 GLN 98 74 74 GLN GLN A . n A 1 99 GLU 99 75 75 GLU GLU A . n A 1 100 ILE 100 76 76 ILE ILE A . n A 1 101 ALA 101 77 77 ALA ALA A . n A 1 102 LEU 102 78 78 LEU LEU A . n A 1 103 LEU 103 79 79 LEU LEU A . n A 1 104 ARG 104 80 80 ARG ARG A . n A 1 105 GLU 105 81 81 GLU GLU A . n A 1 106 ARG 106 82 82 ARG ARG A . n A 1 107 GLU 107 83 83 GLU GLU A . n A 1 108 ALA 108 84 84 ALA ALA A . n A 1 109 GLU 109 85 85 GLU GLU A . n A 1 110 LEU 110 86 86 LEU LEU A . n A 1 111 LYS 111 87 87 LYS LYS A . n A 1 112 GLN 112 88 88 GLN GLN A . n A 1 113 ARG 113 89 89 ARG ARG A . n A 1 114 VAL 114 90 90 VAL VAL A . n A 1 115 ALA 115 91 91 ALA ALA A . n A 1 116 GLU 116 92 92 GLU GLU A . n A 1 117 VAL 117 93 93 VAL VAL A . n A 1 118 LYS 118 94 94 LYS LYS A . n A 1 119 VAL 119 95 95 VAL VAL A . n A 1 120 THR 120 96 96 THR THR A . n A 1 121 LEU 121 97 97 LEU LEU A . n A 1 122 GLU 122 98 98 GLU GLU A . n A 1 123 GLN 123 99 99 GLN GLN A . n A 1 124 GLU 124 100 100 GLU GLU A . n A 1 125 ARG 125 101 101 ARG ARG A . n A 1 126 THR 126 102 102 THR THR A . n A 1 127 LEU 127 103 103 LEU LEU A . n A 1 128 LEU 128 104 104 LEU LEU A . n A 1 129 LYS 129 105 105 LYS LYS A . n A 1 130 GLN 130 106 106 GLN GLN A . n A 1 131 LYS 131 107 107 LYS LYS A . n A 1 132 GLN 132 108 108 GLN GLN A . n A 1 133 GLN 133 109 109 GLN GLN A . n A 1 134 GLU 134 110 110 GLU GLU A . n A 1 135 ALA 135 111 111 ALA ALA A . n A 1 136 LEU 136 112 112 LEU LEU A . n A 1 137 GLN 137 113 113 GLN GLN A . n A 1 138 ALA 138 114 114 ALA ALA A . n A 1 139 HIS 139 115 115 HIS HIS A . n A 1 140 LYS 140 116 116 LYS LYS A . n A 1 141 THR 141 117 117 THR THR A . n A 1 142 LYS 142 118 118 LYS LYS A . n A 1 143 GLU 143 119 119 GLU GLU A . n A 1 144 LYS 144 120 120 LYS LYS A . n A 1 145 PHE 145 121 121 PHE PHE A . n A 1 146 VAL 146 122 122 VAL VAL A . n A 1 147 GLN 147 123 123 GLN GLN A . n A 1 148 LEU 148 124 124 LEU LEU A . n A 1 149 GLN 149 125 125 GLN GLN A . n A 1 150 GLN 150 126 126 GLN GLN A . n A 1 151 GLN 151 127 127 GLN GLN A . n A 1 152 GLU 152 128 128 GLU GLU A . n A 1 153 ILE 153 129 129 ILE ILE A . n A 1 154 ALA 154 130 130 ALA ALA A . n A 1 155 GLU 155 131 131 GLU GLU A . n A 1 156 GLN 156 132 132 GLN GLN A . n A 1 157 SER 157 133 133 SER SER A . n A 1 158 ARG 158 134 134 ARG ARG A . n A 1 159 GLN 159 135 135 GLN GLN A . n A 1 160 GLN 160 136 136 GLN GLN A . n A 1 161 GLN 161 137 137 GLN GLN A . n A 1 162 TYR 162 138 138 TYR TYR A . n A 1 163 GLN 163 139 139 GLN GLN A . n A 1 164 GLU 164 140 140 GLU GLU A . n A 1 165 GLU 165 141 141 GLU GLU A . n A 1 166 LEU 166 142 142 LEU LEU A . n A 1 167 GLU 167 143 143 GLU GLU A . n A 1 168 GLN 168 144 144 GLN GLN A . n A 1 169 GLU 169 145 145 GLU GLU A . n A 1 170 GLU 170 146 146 GLU GLU A . n A 1 171 PHE 171 147 147 PHE PHE A . n A 1 172 ARG 172 148 148 ARG ARG A . n A 1 173 THR 173 149 ? ? ? A . n A 1 174 VAL 174 150 ? ? ? A . n A 1 175 ASP 175 151 ? ? ? A . n A 1 176 ILE 176 152 ? ? ? A . n A 1 177 ILE 177 153 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 201 1 PO4 PO4 A . C 2 PO4 1 202 2 PO4 PO4 A . D 3 HOH 1 301 3 HOH HOH A . D 3 HOH 2 302 4 HOH HOH A . D 3 HOH 3 303 5 HOH HOH A . D 3 HOH 4 304 6 HOH HOH A . D 3 HOH 5 305 7 HOH HOH A . D 3 HOH 6 306 8 HOH HOH A . D 3 HOH 7 307 9 HOH HOH A . D 3 HOH 8 308 10 HOH HOH A . D 3 HOH 9 309 11 HOH HOH A . D 3 HOH 10 310 12 HOH HOH A . D 3 HOH 11 311 13 HOH HOH A . D 3 HOH 12 312 14 HOH HOH A . D 3 HOH 13 313 15 HOH HOH A . D 3 HOH 14 314 16 HOH HOH A . D 3 HOH 15 315 17 HOH HOH A . D 3 HOH 16 316 18 HOH HOH A . D 3 HOH 17 317 19 HOH HOH A . D 3 HOH 18 318 20 HOH HOH A . D 3 HOH 19 319 21 HOH HOH A . D 3 HOH 20 320 22 HOH HOH A . D 3 HOH 21 321 23 HOH HOH A . D 3 HOH 22 322 24 HOH HOH A . D 3 HOH 23 323 25 HOH HOH A . D 3 HOH 24 324 26 HOH HOH A . D 3 HOH 25 325 27 HOH HOH A . D 3 HOH 26 326 28 HOH HOH A . D 3 HOH 27 327 29 HOH HOH A . D 3 HOH 28 328 30 HOH HOH A . D 3 HOH 29 329 31 HOH HOH A . D 3 HOH 30 330 32 HOH HOH A . D 3 HOH 31 331 33 HOH HOH A . D 3 HOH 32 332 34 HOH HOH A . D 3 HOH 33 333 35 HOH HOH A . D 3 HOH 34 334 36 HOH HOH A . D 3 HOH 35 335 37 HOH HOH A . D 3 HOH 36 336 38 HOH HOH A . D 3 HOH 37 337 39 HOH HOH A . D 3 HOH 38 338 40 HOH HOH A . D 3 HOH 39 339 41 HOH HOH A . D 3 HOH 40 340 42 HOH HOH A . D 3 HOH 41 341 43 HOH HOH A . D 3 HOH 42 342 44 HOH HOH A . D 3 HOH 43 343 45 HOH HOH A . D 3 HOH 44 344 46 HOH HOH A . D 3 HOH 45 345 47 HOH HOH A . D 3 HOH 46 346 48 HOH HOH A . D 3 HOH 47 347 49 HOH HOH A . D 3 HOH 48 348 50 HOH HOH A . D 3 HOH 49 349 51 HOH HOH A . D 3 HOH 50 350 52 HOH HOH A . D 3 HOH 51 351 53 HOH HOH A . D 3 HOH 52 352 54 HOH HOH A . D 3 HOH 53 353 55 HOH HOH A . D 3 HOH 54 354 56 HOH HOH A . D 3 HOH 55 355 57 HOH HOH A . D 3 HOH 56 356 58 HOH HOH A . D 3 HOH 57 357 59 HOH HOH A . D 3 HOH 58 358 60 HOH HOH A . D 3 HOH 59 359 61 HOH HOH A . D 3 HOH 60 360 62 HOH HOH A . D 3 HOH 61 361 63 HOH HOH A . D 3 HOH 62 362 64 HOH HOH A . D 3 HOH 63 363 65 HOH HOH A . D 3 HOH 64 364 66 HOH HOH A . D 3 HOH 65 365 67 HOH HOH A . D 3 HOH 66 366 68 HOH HOH A . D 3 HOH 67 367 69 HOH HOH A . D 3 HOH 68 368 70 HOH HOH A . D 3 HOH 69 369 71 HOH HOH A . D 3 HOH 70 370 72 HOH HOH A . D 3 HOH 71 371 73 HOH HOH A . D 3 HOH 72 372 74 HOH HOH A . D 3 HOH 73 373 75 HOH HOH A . D 3 HOH 74 374 76 HOH HOH A . D 3 HOH 75 375 77 HOH HOH A . D 3 HOH 76 376 78 HOH HOH A . D 3 HOH 77 377 79 HOH HOH A . D 3 HOH 78 378 80 HOH HOH A . D 3 HOH 79 379 81 HOH HOH A . D 3 HOH 80 380 82 HOH HOH A . D 3 HOH 81 381 83 HOH HOH A . D 3 HOH 82 382 84 HOH HOH A . D 3 HOH 83 383 85 HOH HOH A . D 3 HOH 84 384 86 HOH HOH A . D 3 HOH 85 385 87 HOH HOH A . D 3 HOH 86 386 88 HOH HOH A . D 3 HOH 87 387 89 HOH HOH A . D 3 HOH 88 388 90 HOH HOH A . D 3 HOH 89 389 91 HOH HOH A . D 3 HOH 90 390 92 HOH HOH A . D 3 HOH 91 391 93 HOH HOH A . D 3 HOH 92 392 94 HOH HOH A . D 3 HOH 93 393 95 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 25 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 304 ? D HOH . 2 1 A HOH 309 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-09-11 2 'Structure model' 1 1 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 77.7630 67.4306 8.9547 0.1324 0.3355 0.3313 -0.0320 -0.0637 -0.0044 8.3504 9.0621 14.3558 0.3432 -4.8559 2.6149 0.7054 0.0144 -0.7250 0.6890 0.1062 -0.0420 -0.4918 1.1640 -0.8116 'X-RAY DIFFRACTION' 2 ? refined 52.2364 80.4082 -5.3292 0.1232 0.1162 0.1291 0.0432 -0.0589 0.0424 15.9124 3.2442 4.2698 -7.0514 6.9961 -3.3688 -0.0973 -0.0849 0.4335 -0.0259 -0.0692 -0.2064 0.0056 0.0890 0.1665 'X-RAY DIFFRACTION' 3 ? refined 14.3296 97.7763 -35.6040 0.1644 0.2087 0.0624 0.0192 -0.0359 0.0219 3.5354 1.9311 4.6456 -1.8370 0.5631 -2.3173 0.0866 0.2819 0.1422 -0.0745 0.0509 -0.0046 -0.0903 -0.3926 -0.1375 'X-RAY DIFFRACTION' 4 ? refined 30.4649 86.7282 -27.2686 0.2520 0.3386 0.1950 0.0930 -0.0262 0.0286 11.0964 7.1951 15.7990 -8.6641 13.1862 -10.4562 0.4088 0.5073 0.0300 -0.4613 -0.4980 -0.2682 0.6007 0.5245 0.0893 'X-RAY DIFFRACTION' 5 ? refined 59.4076 67.1211 4.3406 0.1240 0.1253 0.1712 0.0456 -0.0756 0.0636 22.3615 4.9004 22.8974 -9.4056 19.8832 -7.0656 0.5450 -0.6502 -0.5451 -0.3202 0.1464 0.3077 0.9523 -0.4487 -0.6914 'X-RAY DIFFRACTION' 6 ? refined 77.7614 59.0745 25.0901 0.4252 0.5411 0.1727 0.2599 -0.0576 -0.0306 22.6848 8.7766 26.8481 -10.7728 21.0868 -15.1524 0.5118 0.4291 -0.5156 0.8284 0.3042 0.4869 -1.0102 -0.1805 -0.8160 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A -10 ? ? A -1 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 ? ? A 34 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 35 ? ? A 69 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 70 ? ? A 110 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 111 ? ? A 133 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 134 ? ? A 148 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' Max ? 1 SHELXS phasing . ? 2 REFMAC refinement 5.8.0046 ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A -9 ? ? 71.29 103.12 2 1 GLU A -8 ? ? -63.96 81.71 3 1 PHE A 147 ? ? -141.65 -54.29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -23 ? A MSE 1 2 1 Y 1 A HIS -22 ? A HIS 2 3 1 Y 1 A HIS -21 ? A HIS 3 4 1 Y 1 A HIS -20 ? A HIS 4 5 1 Y 1 A HIS -19 ? A HIS 5 6 1 Y 1 A HIS -18 ? A HIS 6 7 1 Y 1 A HIS -17 ? A HIS 7 8 1 Y 1 A SER -16 ? A SER 8 9 1 Y 1 A SER -15 ? A SER 9 10 1 Y 1 A GLY -14 ? A GLY 10 11 1 Y 1 A VAL -13 ? A VAL 11 12 1 Y 1 A ASP -12 ? A ASP 12 13 1 Y 1 A LEU -11 ? A LEU 13 14 1 Y 1 A THR 149 ? A THR 173 15 1 Y 1 A VAL 150 ? A VAL 174 16 1 Y 1 A ASP 151 ? A ASP 175 17 1 Y 1 A ILE 152 ? A ILE 176 18 1 Y 1 A ILE 153 ? A ILE 177 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #